Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
46 1 1
47 1 1
48 1 1
48 48 48

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 102 202
Multiple Base Substitutions 0 0
Deletions 24 174
Insertions 12 155
Mobile Element Insertions 24 72
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 162 603

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 11 0 84.1 2877850 99.3% 2857705 139.7
A2 F60 I1 R1 10 0 62.6 2112368 99.3% 2097581 139.7
A3 F60 I1 R1 12 0 94.2 3206498 99.2% 3180846 139.7
A4 F60 I1 R1 12 0 50.8 1718192 99.2% 1704446 139.7
A5 F60 I1 R1 11 0 106.5 3626608 99.4% 3604848 139.6
A6 F60 I1 R1 12 0 67.4 2278680 99.3% 2262729 139.8
A7 F60 I1 R1 12 0 46.6 1574738 99.3% 1563714 139.7
A8 F60 I1 R1 11 0 105.7 3640206 99.3% 3614724 139.7
A9 F60 I1 R1 14 0 102.3 3475248 99.2% 3447446 139.7
A10 F60 I1 R1 14 0 47.0 1584470 99.3% 1573378 139.7
A11 F60 I1 R1 10 0 51.3 1751428 99.3% 1739168 139.7
A12 F60 I1 R1 11 0 56.7 1921472 99.2% 1906100 139.7
A13 F60 I1 R1 15 0 29.7 1000242 99.3% 993240 139.7
A14 F60 I1 R1 16 0 24.9 850972 99.3% 845015 139.8
A15 F60 I1 R1 11 0 82.4 2787280 99.3% 2767769 139.8
A16 F60 I1 R1 14 0 77.9 2636256 99.3% 2617802 139.7
A17 F60 I1 R1 12 0 53.6 1837042 99.4% 1826019 139.7
A18 F60 I1 R1 11 0 58.5 1955654 99.2% 1940008 139.7
A19 F60 I1 R1 14 0 24.6 828476 99.4% 823505 139.7
A20 F60 I1 R1 11 0 19.9 672486 99.1% 666433 139.7
A21 F60 I1 R1 10 0 44.1 1491670 99.3% 1481228 139.7
A22 F60 I1 R1 10 0 59.9 2016994 99.4% 2004892 139.7
A23 F60 I1 R1 15 0 56.4 1935730 99.1% 1918308 139.6
A24 F60 I1 R1 14 0 65.3 2268266 99.4% 2254656 139.7
A25 F60 I1 R1 11 0 63.2 2180318 99.3% 2165055 139.9
A26 F60 I1 R1 10 0 76.7 2602066 99.2% 2581249 139.9
A27 F60 I1 R1 12 0 71.8 2416694 99.3% 2399777 139.8
A28 F60 I1 R1 12 0 125.8 4275658 99.2% 4241452 139.8
A29 F60 I1 R1 16 0 60.5 2036480 99.3% 2022224 139.7
A30 F60 I1 R1 15 0 76.5 2593132 99.3% 2574980 139.8
A31 F60 I1 R1 14 0 98.2 3313776 99.4% 3293893 139.7
A32 F60 I1 R1 12 0 62.3 2143630 99.4% 2130768 139.6
A33 F60 I1 R1 16 0 122.3 4141184 99.3% 4112195 139.8
A34 F60 I1 R1 16 0 37.4 1156714 99.0% 1145146 139.8
A35 F60 I1 R1 15 0 135.2 4575492 99.1% 4534312 139.9
A36 F60 I1 R1 11 0 80.9 2692148 99.3% 2673302 139.6
A37 F60 I1 R1 11 0 67.0 2272968 99.3% 2257057 139.8
A38 F60 I1 R1 11 0 52.8 1803454 99.4% 1792633 139.9
A39 F60 I1 R1 12 0 119.0 4016294 99.1% 3980147 139.8
A40 F60 I1 R1 16 0 97.9 3346866 99.1% 3316744 139.9
A41 F60 I1 R1 10 0 77.1 2627198 99.1% 2603553 139.8
A42 F60 I1 R1 11 0 101.3 3486738 99.1% 3455357 139.8
A43 F60 I1 R1 13 0 112.9 3873066 99.1% 3838208 139.8
A44 F60 I1 R1 13 0 88.8 2988622 99.3% 2967701 139.7
A45 F60 I1 R1 11 0 140.9 4845978 99.3% 4812056 139.8
A46 F60 I1 R1 12 0 177.5 6114408 98.9% 6047149 139.8
A47 F60 I1 R1 15 0 79.9 2721486 98.9% 2691549 139.8
A48 F60 I1 R1 15 0 107.7 3670262 99.0% 3633559 139.8

Mutation Needle Plot

Mutation Targets

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