Thu Feb  1 20:11:08 2024

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/JE3692-4.gb /var/alemutpipe-outputs/good/SSW_ND_AG3916JE3692_S54_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/SSW_ND_AG3916JE3692_S54_L004_R2_001.good.fq.gz