mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,495,101 | T→C | 5.8% | intergenic (‑30/‑187) | ydcI ← / → ydcJ | putative DNA‑binding transcriptional repressor YdcI/DUF1338 domain‑containing protein YdcJ |
| RA | 1,529,175 | T→C | 5.9% | pseudogene (1286/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,180 | T→C | 5.1% | pseudogene (1291/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,185 | C→T | 6.0% | pseudogene (1296/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,203 | C→A | 8.6% | pseudogene (1314/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,218 | C→T | 16.1% | pseudogene (1329/2049 nt) | rhsE → | RhsE protein in rhs element |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,351,353 | A→T | 5.8% | M341K (ATG→AAG) | glpT ← | sn‑glycerol 3‑phosphate:phosphate antiporter |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,184,809 | G→T | 82.8% | G1189C (GGT→TGT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,060 | C→T | 23.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +C | 92.7% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:2 | +G | 92.7% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 105258 | 96 (0.850) | 5 (0.050) | 5/464 | NT | 5.1% | intergenic (+14/‑47) | ftsA/ftsZ | cell division protein FtsA/cell division protein FtsZ |
| ? | NC_000913 | = 105268 | 94 (0.860) | intergenic (+24/‑37) | ftsA/ftsZ | cell division protein FtsA/cell division protein FtsZ | |||||
| * | ? | NC_000913 | 1207790 = | 53 (0.470) | 47 (0.440) | 37/448 | NT | 50.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 43 (0.410) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 53 (0.470) | 25 (0.240) | 20/448 | NT | 35.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 43 (0.410) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 83 (0.740) | 63/472 | NT | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1899984 = | 74 (0.650) | 4 (0.040) | 4/458 | NT | 5.5% | coding (1558/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD |
| ? | NC_000913 | 1900017 = | 67 (0.620) | coding (1591/1599 nt) | pdeD | putative c‑di‑GMP phosphodiesterase PdeD | |||||
| * | ? | NC_000913 | 4037216 = | 83 (0.730) | 4 (0.040) | 4/462 | NT | 5.1% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 68 (0.620) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | 4094385 = | NA (NA) | 5 (0.050) | 5/468 | NT | NA | noncoding (28/36 nt) | other | REP299b |
| ? | NC_000913 | 4094508 = | NA (NA) | noncoding (27/34 nt) | other | REP299e | |||||