| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,176,173 | G→T | 10.8% | G135V (GGT→GTT) | med → | transcriptional regulator Med |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,176,173 | 0 | G | T | 10.8% | 710.4 / 56.5 | 255 | G135V (GGT→GTT) | med | transcriptional regulator Med |
| Reads supporting (aligned to +/- strand): ref base G (121/105); new base T (19/10); total (140/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 280 total aligned reads displayed.
CTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACA > NZ_CP034943/1176034‑1176312 | ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATggg > 1:1441396/1‑140 (MQ=255)ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATggg > 1:2590964/1‑140 (MQ=255)ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATggg > 1:3371265/1‑140 (MQ=255)ctctATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATggg > 1:699496/1‑140 (MQ=255) tGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGttttt > 2:3302648/1‑140 (MQ=255) tGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTAAGCGGCGAAGCAATGGGttttt > 2:2817977/1‑140 (MQ=255) aTGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTgga > 2:2506704/1‑140 (MQ=255) aTGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTgga > 2:2100957/1‑140 (MQ=255) aTGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTgga > 2:1962139/1‑140 (MQ=255) ggAGTGAATATGCAGAGGTGTATAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATATATAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTACCGCTGCGAAGCAATGGGTTTTTTTggagga > 2:2440968/1‑140 (MQ=255) tGAATGTGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGa > 1:2255455/1‑140 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGt > 1:1836832/1‑124 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGt < 2:1836832/124‑1 (MQ=255) cAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGTGGAATGACAGCTGcc > 2:1122840/1‑140 (MQ=255) cAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGcc > 1:864908/1‑140 (MQ=255) gagGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCa > 2:4206676/1‑140 (MQ=255) gagGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCa > 1:1001004/1‑140 (MQ=255) agGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCAt < 1:1536426/140‑1 (MQ=255) agGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCAt < 2:701479/140‑1 (MQ=255) agGTCTTGAACTTGGTCAGCGAAGATTACCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCAt < 1:3214333/140‑1 (MQ=255) tAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGa > 1:3605359/1‑140 (MQ=255) cTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGaaaa > 1:229635/1‑140 (MQ=255) cTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGaaaa < 1:4082049/140‑1 (MQ=255) cTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGaaaa < 1:2765317/140‑1 (MQ=255) tGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACg > 1:139505/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:3121225/1‑140 (MQ=255) cGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGt > 1:819991/1‑94 (MQ=255) gAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 2:3098344/140‑1 (MQ=255) gAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 2:2943093/140‑1 (MQ=255) gATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCATAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGATGATTTACTGCTGCTTATCTGTAGAAAAGGTATCAGGtgtg < 2:1059642/140‑4 (MQ=255) aTTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGc > 1:2820935/1‑140 (MQ=255) aTCCAGATATGGAATTCGTAATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGAAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTg < 2:4152973/140‑1 (MQ=255) aGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:3336206/140‑1 (MQ=255) aGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:3447406/140‑1 (MQ=255) aGATATAGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:744242/140‑1 (MQ=255) gATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 2:2743566/140‑1 (MQ=255) atatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCt > 2:719207/1‑140 (MQ=255) tatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCtt > 1:2014533/1‑140 (MQ=255) gAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCg < 1:3757209/127‑1 (MQ=255) gAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCtt > 2:398484/1‑140 (MQ=255) ttCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGACTGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTAc > 2:3557746/1‑140 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCAATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATATGTCGAAAACGAATCAGGTCGGCGTGATTGATTCCTTTACGt > 1:1309086/1‑140 (MQ=255) tCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTgg < 1:4221393/140‑1 (MQ=255) ttCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGc < 1:2189196/140‑1 (MQ=255) tAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCgg < 1:1279818/140‑1 (MQ=255) aaTGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGa < 1:2496286/140‑1 (MQ=255) aTGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAg > 2:377672/1‑140 (MQ=255) tGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg > 1:38349/1‑116 (MQ=255) cTAAAGCAAAAGCTGATACTGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTa < 1:3422108/140‑1 (MQ=255) cTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTa < 1:1798698/140‑1 (MQ=255) tAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAg < 1:2341537/140‑1 (MQ=255) tAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAg < 1:2736222/140‑1 (MQ=255) tAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAg < 2:2308435/140‑1 (MQ=255) aaaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa > 2:1490117/1‑140 (MQ=255) aaaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa < 2:2592723/140‑1 (MQ=255) aaaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa < 2:3433234/140‑1 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc > 1:1220342/1‑140 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc > 2:1576508/1‑140 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc < 1:449489/140‑1 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc > 2:3450945/1‑140 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc > 2:3173733/1‑140 (MQ=255) cAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGt < 2:803790/140‑1 (MQ=255) aTAATTTGACGAGTTTACATTTCAGCGGCGAAGCAATTGGTTTTTTTTGAGGAATTAAATCTGCCACTCTGTCGAAAACGAATCATGTCGGAGTGATTTCTTCATATAAGTTGAAGCAGGTTGTAGACTGTTTTATCaaa > 2:3829476/1‑140 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGACGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGTATGAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTCTCCGGTTTTATCaag > 1:967112/1‑139 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa > 1:315629/1‑127 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACg < 2:319317/129‑1 (MQ=255) aTAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGACAGCCGGAGGTAGACGGTTTTATCaaa > 2:1617986/1‑140 (MQ=255) aTAATGAGACGAGGGTCCATTTCAGCTGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGATGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTGACGTGGCAGCCGGAGGTAGACGGTTTTATCaaa < 2:2251751/140‑1 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa > 2:1908080/1‑121 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa > 2:1191603/1‑121 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa < 1:1908080/121‑1 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGcc > 2:581346/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 2:1289330/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGACTCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa < 2:1100681/140‑1 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa > 1:3046077/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa > 2:373472/1‑140 (MQ=255) gAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaatt > 2:3375754/1‑138 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:898137/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:4150039/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCCAATATGaa > 2:60431/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 2:3263598/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:291254/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:2184168/1‑140 (MQ=255) aTTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt > 2:4000362/1‑140 (MQ=255) aTTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt < 2:139679/140‑1 (MQ=255) aTTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt > 2:3539031/1‑140 (MQ=255) ttCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATcc < 2:965869/140‑1 (MQ=255) ttCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATcc < 1:1632213/140‑1 (MQ=255) aGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTc > 1:1072357/1‑80 (MQ=255) cggcgAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 2:173204/1‑140 (MQ=255) cggcgAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 2:45046/1‑140 (MQ=255) aTGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCaa < 2:2184168/140‑1 (MQ=255) tGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 1:3986221/140‑1 (MQ=255) tGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 1:3121225/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGGCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 2:389851/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 2:229635/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 1:45046/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 1:173204/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 1:1194478/140‑1 (MQ=255) gTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAcaca < 2:839759/140‑1 (MQ=255) | CTCTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAACACA > NZ_CP034943/1176034‑1176312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |