breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 44,301 (T)9→8 intergenic (+132/‑359) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR
RA 120,983 (T)9→8 intergenic (+280/+92) polA → / ← engB DNA polymerase I/putative GTP‑binding protein EngB
RA 179,484 T→C C316R (TGC→CGC)  CJ019_00182 → hypothetical protein
RA 1,527,131 G→A A696T (GCC→ACC)  secA → Protein translocase subunit SecA
RA 3,065,508 G→A V53M (GTG→ATG)  rcsC_6 → Sensor histidine kinase RcsC
RA 3,508,387 A→G E1333G (GAA→GGA)  rhsA → putative deoxyribonuclease RhsA
RA 3,957,240 C→T G137R (GGG→AGG)  dmlR_13 ← HTH‑type transcriptional regulator DmlR
JC 4,257,352 +GCGGCCGC intergenic (‑281/+7) CJ019_03991 ← / ← CJ019_03994 putative ABC transporter ATP‑binding protein/hypothetical protein
RA 5,756,060 (A)6→5 coding (781/834 nt) CJ019_05400 → hypothetical protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ ACB122 75464 75553 90 7 [6] [6] 10 aroE_1/CJ019_00080 Shikimate dehydrogenase (NADP( ))/hypothetical protein
* * ÷ ACB122 87999 88050 52 7 [5] [6] 7 [CJ019_00094]–[CJ019_00095] [CJ019_00094],[CJ019_00095]
* * ÷ ACB122 161232 161376–161317 86–145 9 [6] [5] 7 [uctC_1] [uctC_1]
* * ÷ ACB122 213560 213697 138 7 [6] [6] 7 [CJ019_00185] [CJ019_00185]
* * ÷ ACB122 238432 238471 40 7 [5] [6] 7 CJ019_00212 hypothetical protein
* * ÷ ACB122 309053 309119 67 7 [6] [6] 7 [CJ019_00284] [CJ019_00284]
* * ÷ ACB122 346045 346227 183 7 [6] [6] 7 [hisF]–[btuD_1] [hisF],[btuD_1]
* * ÷ ACB122 438122 438209 88 7 [6] [6] 7 CJ019_00396/dmdC_1 hypothetical protein/3‑methylmercaptopropionyl‑CoA dehydrogenase
* * ÷ ACB122 517190 517274 85 7 [5] [6] 7 tyrS/birA Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA
* * ÷ ACB122 607300 607406 107 7 [6] [6] 8 dxs/ispA 1‑deoxy‑D‑xylulose‑5‑phosphate synthase/Farnesyl diphosphate synthase
* * ÷ ACB122 641264 641321 58 7 [6] [6] 7 [acoR_2] [acoR_2]
* * ÷ ACB122 661103 661188 86 7 [6] [6] 7 yfhM/CJ019_00619 Alpha‑2‑macroglobulin/hypothetical protein
* * ÷ ACB122 674216 674380 165 8 [6] [5] 11 [nimR_1]–[mcpH_2] [nimR_1],[mcpH_2]
* * ÷ ACB122 789837 789959 123 7 [5] [6] 7 [CJ019_00751] [CJ019_00751]
* * ÷ ACB122 876874 876983 110 7 [6] [5] 9 CJ019_00843/malT putative protein/HTH‑type transcriptional regulator MalT
* * ÷ ACB122 908090 908222 133 7 [6] [6] 7 fruA/CJ019_00870 PTS system fructose‑specific EIIB'BC component/hypothetical protein
* * ÷ ACB122 948196 948245 50 7 [6] [5] 7 cyoE/alaC Protoheme IX farnesyltransferase/Glutamate‑pyruvate aminotransferase AlaC
* * ÷ ACB122 1000532 1000623 92 7 [4] [6] 8 [fecA_1] [fecA_1]
* * ÷ ACB122 1106843 1106942 100 7 [5] [6] 8 [hupB_1]–[rlmF] [hupB_1],[rlmF]
* * ÷ ACB122 1304775 1304838 64 7 [6] [6] 9 CJ019_01223/rapA putative signaling protein/RNA polymerase‑associated protein RapA
* * ÷ ACB122 1360632 1360987 356 7 [5] [6] 7 CJ019_01275 hypothetical protein
* * ÷ ACB122 1396607 1396683 77 8 [6] [6] 8 [mcpU_1] [mcpU_1]
* * ÷ ACB122 1457230 1457289 60 7 [6] [6] 7 [algX] [algX]
* * ÷ ACB122 1480095 1480173 79 12 [6] [5] 7 [degS] [degS]
* * ÷ ACB122 1492516 1492596 81 7 [6] [5] 8 CJ019_01406/zapE_1 hypothetical protein/Cell division protein ZapE
* * ÷ ACB122 1499961 1500019 59 7 [6] [5] 7 petC/sspA Ammonia monooxygenase gamma subunit/Stringent starvation protein A
* * ÷ ACB122 1585608 1585707 100 8 [6] [6] 7 CJ019_01493 hypothetical protein
* * ÷ ACB122 1608706 1608792 87 7 [6] [6] 7 CJ019_01513 hypothetical protein
* * ÷ ACB122 1697638 1697734 97 7 [6] [3] 7 [CJ019_01593] [CJ019_01593]
* * ÷ ACB122 1833080 1833171 92 7 [6] [5] 7 [resA_1]–[CJ019_01751] [resA_1],[CJ019_01751]
* * ÷ ACB122 1835822 1835900 79 8 [6] [6] 8 barA Signal transduction histidine‑protein kinaseBarA
* * ÷ ACB122 1914570 1914639 70 9 [5] [6] 8 [ppsC_1] [ppsC_1]
* * ÷ ACB122 1923406 1923542 137 7 [6] [4] 7 [apeB] [apeB]
* * ÷ ACB122 1940809 1940926 118 8 [5] [6] 7 CJ019_01857/gshAB hypothetical protein/Glutathione biosynthesis bifunctional proteinGshAB
* * ÷ ACB122 2031238 2031373 136 7 [6] [6] 8 CJ019_01924/wecB hypothetical protein/UDP‑N‑acetylglucosamine 2‑epimerase
* * ÷ ACB122 2043589 2043698 110 7 [6] [5] 12 smrA/CJ019_01939 putative DNA endonuclease SmrA/hypothetical protein
* * ÷ ACB122 2092968 2093067 100 7 [6] [3] 9 rcsC_3/CJ019_01993 Sensor histidine kinase RcsC/hypothetical protein
* * ÷ ACB122 2234330 2234415 86 7 [6] [4] 7 gltX/PP_RS08750 Glutamate‑‑tRNA ligase/tRNA‑Val
* * ÷ ACB122 2287050 2287100 51 7 [6] [5] 7 [CJ019_02168]–[CJ019_02169] [CJ019_02168],[CJ019_02169]
* * ÷ ACB122 2288826 2288931 106 8 [6] [6] 7 CJ019_02171/CJ019_02172 hypothetical protein/hypothetical protein
* * ÷ ACB122 2471441 2471550 110 8 [5] [6] 7 [CJ019_02330] [CJ019_02330]
* * ÷ ACB122 2942842 2942875 34 10 [3] [6] 8 CJ019_02780/CJ019_02781 hypothetical protein/8‑oxoguanine deaminase
* * ÷ ACB122 2951833 2951917 85 9 [5] [6] 8 puuC_1/fatA_2 NADP/NAD‑dependent aldehyde dehydrogenase PuuC/Ferric‑anguibactin receptor FatA
* * ÷ ACB122 3002613 3002657 45 8 [6] [5] 7 [PP_RS08755]–[PP_RS08765] [PP_RS08755],[PP_RS08765]
* * ÷ ACB122 3040214 3040299 86 7 [5] [6] 7 pstB3/CJ019_02856 Phosphate import ATP‑binding protein PstB 3/hypothetical protein
* * ÷ ACB122 3046199 3046313 115 7 [6] [6] 8 [rcsC_5]–[degU_2] [rcsC_5],[degU_2]
* * ÷ ACB122 3047747 3047806 60 7 [6] [5] 7 CJ019_02862/CJ019_02863 hypothetical protein/hypothetical protein
* * ÷ ACB122 3145295 3145374 80 7 [4] [6] 7 livH_4 High‑affinity branched‑chain amino acidtransport system permease protein LivH
* * ÷ ACB122 3280243 3280350 108 8 [6] [6] 9 [CJ019_03085] [CJ019_03085]
* * ÷ ACB122 3305716 3305824 109 9 [6] [6] 7 [CJ019_03107] [CJ019_03107]
* * ÷ ACB122 3769400 3769472 73 7 [6] [5] 7 CJ019_03581/CJ019_03582 hypothetical protein/hypothetical protein
* * ÷ ACB122 3944707 3944819 113 8 [6] [6] 7 CJ019_03729/CJ019_03730 hypothetical protein/hypothetical protein
* * ÷ ACB122 4025792 4025820 29 7 [5] [5] 7 dmdC_5/CJ019_03801 3‑methylmercaptopropionyl‑CoA dehydrogenase/hypothetical protein
* * ÷ ACB122 4043539 4043621 83 10 [6] [6] 9 [oprB_3] [oprB_3]
* * ÷ ACB122 4163777 4163878 102 7 [6] [6] 7 katG/leuO_2 Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO
* * ÷ ACB122 4330080 4330148 69 7 [6] [6] 7 [CJ019_04068] [CJ019_04068]
* * ÷ ACB122 4335881 4335968 88 9 [6] [4] 7 [btuD_7] [btuD_7]
* * ÷ ACB122 4344764 4344818 55 9 [6] [4] 7 nmoA Nitronate monooxygenase
* * ÷ ACB122 4434200 4434271 72 7 [6] [6] 7 nicP_12/nicT_2 Porin‑like protein NicP/Putative metabolite transport protein NicT
* * ÷ ACB122 4521581 4521679 99 7 [6] [6] 7 [CJ019_04289] [CJ019_04289]
* * ÷ ACB122 4666925 4667004 80 7 [5] [6] 7 btuB_4/chrR Vitamin B12 transporter BtuB/Quinone reductase
* * ÷ ACB122 4732422 4732486 65 7 [6] [5] 7 gltA/CJ019_04468 Citrate synthase/hypothetical protein
* * ÷ ACB122 4801864 4802296 433 7 [6] [6] 8 CJ019_04509/dsbD_2 hypothetical protein/Thiol:disulfide interchange protein DsbD
* * ÷ ACB122 4883529 4883647 119 8 [6] [5] 7 hyi/glxR Hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
* * ÷ ACB122 4887553 4887596 44 9 [5] [6] 7 ttuE/CJ019_04580 Pyruvate kinase/Urea transporter
* * ÷ ACB122 4944884 4944999 116 7 [6] [6] 7 [CJ019_04642] [CJ019_04642]
* * ÷ ACB122 5156434 5156595 162 9 [6] [6] 9 [CJ019_04852] [CJ019_04852]
* * ÷ ACB122 5193592 5193665 74 7 [6] [6] 7 [gltR_4] [gltR_4]
* * ÷ ACB122 5250804 5250852 49 7 [5] [3] 7 [CJ019_04947] [CJ019_04947]
* * ÷ ACB122 5327134 5327261 128 7 [6] [6] 7 [gluQ] [gluQ]
* * ÷ ACB122 5431914 5432005 92 7 [6] [6] 7 [rluE] [rluE]
* * ÷ ACB122 5477748 5477849 102 7 [6] [6] 10 purH/purD Bifunctional purine biosynthesis protein PurH/Phosphoribosylamine‑‑glycine ligase
* * ÷ ACB122 5499071 5499291 221 8 [6] [5] 7 [CJ019_05176] [CJ019_05176]
* * ÷ ACB122 5529674 5529757 84 7 [6] [6] 7 nadE/CJ019_05208 NH(3)‑dependent NAD( ) synthetase/Azurin
* * ÷ ACB122 5531191 5531263 73 7 [5] [5] 8 CJ019_05209/CJ019_05210 Putative cytokinin riboside 5'‑monophosphate phosphoribohydrolase/hypothetical protein
* * ÷ ACB122 5548205 5548339 135 7 [5] [5] 8 CJ019_05226/CJ019_05227 hypothetical protein/hypothetical protein
* * ÷ ACB122 5550456 5550583 128 7 [6] [6] 7 CJ019_05227/purA hypothetical protein/Adenylosuccinate synthetase
* * ÷ ACB122 5645616 5645679 64 7 [5] [5] 7 CJ019_05302/CJ019_05303 hypothetical protein/hypothetical protein
* * ÷ ACB122 5733099 5733216 118 8 [3] [6] 7 [blc_2] [blc_2]
* * ÷ ACB122 5809545 5809648 104 7 [4] [6] 7 [pilT] [pilT]
* * ÷ ACB122 5890369 5890478 110 7 [6] [6] 7 CJ019_05517/czcA_3 hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA
* * ÷ ACB122 5895769 5895849 81 7 [5] [6] 7 [CJ019_05521] [CJ019_05521]
* * ÷ ACB122 5920616 5920700 85 7 [4] [6] 11 CJ019_05542/CJ019_05543 hypothetical protein/putative binding protein component of ABC iron transporter
* * ÷ ACB122 5989823 5989882 60 8 [6] [6] 8 nfdA/CJ019_05610 N‑substituted formamide deformylase/Arylesterase
* * ÷ ACB122 5999190 5999241 52 8 [6] [4] 7 CJ019_05617/gcvA_12 putative protein/Glycine cleavage system transcriptionalactivator