Fri Apr 28 11:15:10 2023

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/KT2440_GenewizSeq.gb /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Putida-Van-KT2440-A1-F42-I1-R1_S89_L004_R2_001.good.fq.gz