mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 91,899 | T→G | 17.6% | L96V (TTG→GTG) | prlC → | Oligopeptidase A |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 169,760 | A→C | 12.1% | intergenic (+724/+2963) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,792 | G→A | 10.1% | intergenic (+756/+2931) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,811 | C→A | 10.3% | intergenic (+775/+2912) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,813 | A→G | 10.9% | intergenic (+777/+2910) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,817 | T→A | 11.1% | intergenic (+781/+2906) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,819 | T→G | 11.2% | intergenic (+783/+2904) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,820 | T→C | 11.6% | intergenic (+784/+2903) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,821 | A→G | 11.9% | intergenic (+785/+2902) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,822 | G→T | 11.9% | intergenic (+786/+2901) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 258,568 | T→C | 5.8% | L216P (CTG→CCG) | davT → | 5‑aminovalerate aminotransferase DavT |
| RA | 272,715 | C→G | 6.6% | A194A (GCG→GCC) | yecS_1 ← | L‑cystine transport system permease proteinYecS |
| RA | 367,777 | G→T | 7.4% | R6L (CGC→CTC) | fixB → | Protein FixB |
| RA | 392,749 | G→C | 7.2% | intergenic (‑116/‑66) | yihG ← / → CJ019_00361 | putative acyltransferase YihG/hypothetical protein |
| RA | 395,017 | A→C | 16.6% | L187V (TTG→GTG) | yibF ← | putative GST‑like protein YibF |
| RA | 395,021 | A→C | 29.6% | P185P (CCT→CCG) | yibF ← | putative GST‑like protein YibF |
| RA | 399,292 | A→C | 35.1% | intergenic (‑186/+122) | CJ019_00365 ← / ← aceF | hypothetical protein/Dihydrolipoyllysine‑residue acetyltransferasecomponent of pyruvate dehydrogenase complex |
| RA | 411,781 | C→A | 8.7% | L172I (CTA→ATA) | kdkA_1 → | 3‑deoxy‑D‑manno‑octulosonic acid kinase |
| RA | 420,269 | T→A | 6.9% | S194C (AGC→TGC) | fhuA_2 ← | Ferrichrome outer membrane transporter/phagereceptor |
| RA | 545,486 | T→A | 5.9% | V46D (GTC→GAC) | rplW → | 50S ribosomal protein L23 |
| RA | 575,740 | T→G | 23.9% | F186V (TTT→GTT) | selB → | Selenocysteine‑specific elongation factor |
| RA | 709,887 | G→A | 7.5% | G139S (GGC→AGC) | CJ019_00664 → | hypothetical protein |
| RA | 759,433 | A→C | 48.4% | intergenic (+42/‑126) | mmuM_1 → / → CJ019_00729 | Homocysteine S‑methyltransferase/L‑methionine gamma‑lyase |
| RA | 812,764 | G→T | 6.0% | R65L (CGT→CTT) | ada → | Bifunctional transcriptional activator/DNArepair enzyme Ada |
| RA | 924,333 | T→G | 25.8% | D4780A (GAC→GCC) | CJ019_00881 ← | hypothetical protein |
| RA | 1,116,475 | T→A | 6.6% | intergenic (‑59/+31) | CJ019_01056 ← / ← capB_1 | hypothetical protein/Cold shock protein CapB |
| RA | 1,266,383 | T→G | 49.1% | intergenic (+121/+47) | cysK_1 → / ← CJ019_01185 | Cysteine synthase/hypothetical protein |
| RA | 1,313,943 | A→C | 33.3% | L614R (CTG→CGG) | CJ019_01235 ← | hypothetical protein |
| RA | 1,313,950 | T→G | 35.1% | R612R (AGG→CGG) | CJ019_01235 ← | hypothetical protein |
| RA | 1,317,342 | C→A | 14.6% | A248S (GCA→TCA) | yfdC ← | Inner membrane protein YfdC |
| RA | 1,528,308 | A→C | 26.6% | P87P (CCA→CCC) | argJ → | Arginine biosynthesis bifunctional protein ArgJ |
| RA | 1,563,328 | C→T | 5.9% | S361S (AGC→AGT) | pcaF_1 → | Beta‑ketoadipyl‑CoA thiolase |
| RA | 1,567,244 | C→T | 7.0% | D48D (GAC→GAT) | CJ019_01477 → | hypothetical protein |
| RA | 1,585,043 | T→G | 37.2% | intergenic (‑94/‑109) | rhaS_1 ← / → CJ019_01492 | HTH‑type transcriptional activator RhaS/hypothetical protein |
| RA | 1,645,364 | C→T | 7.4% | V1487V (GTG→GTA) | shlA ← | Hemolysin |
| RA | 1,670,690 | A→C | 34.8% | intergenic (+27/‑104) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,688,322 | T→G | 23.9% | L411R (CTT→CGT) | wspC → | putative biofilm formation methyltransferaseWspC |
| RA | 1,720,951 | T→G | 33.4% | D90A (GAC→GCC) | plsB ← | Glycerol‑3‑phosphate acyltransferase |
| RA | 1,806,731 | G→T | 52.8% | K10N (AAG→AAT) | yeiG → | S‑formylglutathione hydrolase YeiG |
| RA | 1,807,474 | G→A | 19.3% | G258D (GGC→GAC) | yeiG → | S‑formylglutathione hydrolase YeiG |
| RA | 1,890,959 | T→G | 25.9% | E103D (GAA→GAC) | rdgC ← | Recombination‑associated protein RdgC |
| RA | 1,927,136 | A→G | 10.8% | D182D (GAT→GAC) | minC ← | Septum site‑determining protein MinC |
| RA | 1,997,753 | G→A | 6.1% | T348T (ACC→ACT) | CJ019_01900 ← | hypothetical protein |
| RA | 2,131,359 | T→G | 32.1% | R135R (CGT→CGG) | yadG → | putative ABC transporter ATP‑binding proteinYadG |
| RA | 2,142,773 | G→A | 7.7% | I268I (ATC→ATT) | rne ← | Ribonuclease E |
| RA | 2,203,886 | A→C | 35.2% | T74P (ACC→CCC) | CJ019_02088 → | putative protein |
| RA | 2,241,556 | T→G | 24.0% | N367T (AAC→ACC) | CJ019_02129 ← | hypothetical protein |
| RA | 2,296,924 | C→T | 8.6% | Q325Q (CAG→CAA) | CJ019_02178 ← | hypothetical protein |
| RA | 2,350,451 | G→A | 7.3% | intergenic (‑17/+92) | CJ019_02223 ← / ← CJ019_02224 | hypothetical protein/hypothetical protein |
| RA | 2,380,000 | T→G | 16.3% | N54T (AAC→ACC) | nrtA ← | Nitrate/nitrite binding protein NrtA |
| RA | 2,491,272 | A→C | 31.5% | H33P (CAC→CCC) | iutA → | Ferric aerobactin receptor |
| RA | 2,553,519 | T→G | 19.0% | W121G (TGG→GGG) | CJ019_02406 → | hypothetical protein |
| RA | 2,712,958 | A→C | 19.3% | T83P (ACC→CCC) | CJ019_02561 → | hypothetical protein |
| RA | 2,723,474 | G→A | 6.4% | A288A (GCG→GCA) | nepI_1 → | Purine ribonucleoside efflux pump NepI |
| RA | 2,791,318 | C→A | 9.3% | P159P (CCG→CCT) | nucM ← | Nuclease NucM |
| RA | 2,829,804 | A→G | 6.2% | L101P (CTG→CCG) | gabD1 ← | Succinate‑semialdehyde dehydrogenase [NADP( )]1 |
| RA | 3,061,793 | G→A | 100% | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,244,200 | G→A | 8.3% | A176A (GCG→GCA) | CJ019_03044 → | hypothetical protein |
| RA | 3,259,465 | C→T | 9.7% | V32M (GTG→ATG) | CJ019_03060 ← | hypothetical protein |
| RA | 3,275,333 | T→G | 17.0% | A30A (GCA→GCC) | CJ019_03079 ← | hypothetical protein |
| RA | 3,440,343 | A→C | 100% | S18R (AGC→CGC) | CJ019_03266 → | hypothetical protein |
| RA | 3,617,883 | T→G | 44.2% | D186A (GAC→GCC) | CJ019_03428 ← | 2,6‑dihydropseudooxynicotine hydrolase |
| RA | 3,648,351 | G→A | 5.8% | Q367* (CAG→TAG) | gsiA_1 ← | Glutathione import ATP‑binding protein GsiA |
| RA | 3,661,125 | C→A | 6.6% | G207C (GGC→TGC) | CJ019_03469 ← | putative protein |
| RA | 3,686,797 | Δ1 bp | 7.0% | coding (2428/2502 nt) | ligD ← | Multifunctional non‑homologous end joiningprotein LigD |
| RA | 3,775,251 | A→C | 19.7% | D44A (GAC→GCC) | nikC → | Nickel transport system permease protein NikC |
| RA | 3,784,282 | G→A | 8.0% | Q223Q (CAG→CAA) | CJ019_03594 → | Formylglycine‑generating enzyme |
| RA | 3,813,093 | A→G | 6.7% | S43G (AGC→GGC) | CJ019_03616 → | hypothetical protein |
| RA | 3,848,001 | A→C | 22.1% | F283V (TTT→GTT) | CJ019_03645 ← | hypothetical protein |
| RA | 3,905,078 | A→C | 29.2% | E248A (GAG→GCG) | CJ019_03692 → | hypothetical protein |
| RA | 3,908,501 | T→G | 41.7% | intergenic (‑70/‑176) | rstA_2 ← / → acrE_2 | Transcriptional regulatory protein RstA/Multidrug export protein AcrE |
| RA | 3,909,205 | A→C | 20.9% | T177P (ACC→CCC) | acrE_2 → | Multidrug export protein AcrE |
| RA | 3,934,892 | A→C | 19.3% | V100G (GTG→GGG) | CJ019_03719 ← | hypothetical protein |
| RA | 3,957,351 | G→A | 100% | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,959,315 | T→G | 42.5% | intergenic (+76/‑138) | CJ019_03739 → / → rlhA_2 | hypothetical protein/23S rRNA 5‑hydroxycytidine synthase |
| RA | 3,986,622 | T→G | 31.2% | D31A (GAT→GCT) | CJ019_03763 ← | hypothetical protein |
| RA | 4,029,454 | A→C | 23.4% | D287A (GAC→GCC) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,077,164 | T→G | 39.5% | L173R (CTG→CGG) | artJ_2 → | ABC transporter arginine‑binding protein 1 |
| RA | 4,080,182 | T→G | 23.3% | R412R (CGT→CGG) | dadA → | D‑amino acid dehydrogenase |
| RA | 4,112,358 | T→G | 20.2% | V468G (GTC→GGC) | iorB_2 → | Isoquinoline 1‑oxidoreductase subunit beta |
| RA | 4,131,763 | T→G | 22.7% | E23A (GAG→GCG) | CJ019_03889 ← | hypothetical protein |
| RA | 4,135,592 | A→C | 11.9% | N27T (AAC→ACC) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,607 | A→C | 26.5% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,612 | T→G | 24.5% | W34G (TGG→GGG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,245,134 | A→C | 22.5% | L182V (TTG→GTG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,145 | A→C | 55.7% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,258,554 | A→C | 20.5% | H41P (CAC→CCC) | pht2 → | Phthalate 4,5‑dioxygenase oxygenase reductasesubunit |
| RA | 4,500,158 | T→C | 6.2% | L64P (CTG→CCG) | yqjG → | Glutathionyl‑hydroquinone reductase YqjG |
| RA | 4,502,376 | A→C | 40.5% | V17G (GTC→GGC) | cysG_1 ← | Siroheme synthase |
| RA | 4,586,078 | A→C | 34.9% | E230D (GAA→GAC) | accA1 → | Acetyl‑/propionyl‑coenzyme A carboxylase alphachain |
| RA | 4,626,159 | C→A | 19.9% | intergenic (+117/+181) | CJ019_04367 → / ← pgsA | hypothetical protein/CDP‑diacylglycerol‑‑glycerol‑3‑phosphate 3‑phosphatidyltransferase |
| RA | 4,656,288 | A→C | 16.6% | D502A (GAC→GCC) | nuoG → | NADH‑quinone oxidoreductase subunit G |
| RA | 4,689,048 | C→T | 9.5% | V295M (GTG→ATG) | CJ019_04426 ← | hypothetical protein |
| RA | 4,690,862 | T→G | 46.0% | L281R (CTG→CGG) | yhaJ_2 → | HTH‑type transcriptional regulator YhaJ |
| RA | 4,710,264 | C→T | 7.4% | S616S (AGC→AGT) | rcsC_16 → | Sensor histidine kinase RcsC |
| RA | 4,874,567 | A→C | 33.4% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,880,221 | A→C | 27.3% | V96G (GTG→GGG) | CJ019_04574 ← | hypothetical protein |
| RA | 4,880,240 | T→A | 21.8% | M90L (ATG→TTG) | CJ019_04574 ← | hypothetical protein |
| RA | 5,026,996 | C→T | 12.1% | intergenic (+335/‑75) | yabJ_3 → / → CJ019_03742 | 2‑iminobutanoate/2‑iminopropanoate deaminase/hypothetical protein |
| RA | 5,066,751 | T→A | 5.6% | K14* (AAA→TAA) | CJ019_04758 ← | hypothetical protein |
| RA | 5,073,255 | G→T | 7.7% | intergenic (‑674/+518) | CJ019_04767 ← / ← csrA2 | Magnesium transporter MgtE/Translational regulator CsrA2 |
| RA | 5,149,443 | G→A | 5.8% | A26T (GCC→ACC) | yhaJ_3 → | HTH‑type transcriptional regulator YhaJ |
| RA | 5,182,333 | A→C | 15.3% | G130G (GGT→GGG) | CJ019_04876 ← | hypothetical protein |
| RA | 5,205,006 | G→T | 8.9% | P257H (CCC→CAC) | eptA_2 ← | Phosphoethanolamine transferase EptA |
| RA | 5,284,713 | T→G | 20.5% | F162C (TTT→TGT) | cmpR_6 → | HTH‑type transcriptional activator CmpR |
| RA | 5,290,634 | G→A | 6.3% | T185T (ACC→ACT) | dgcN ← | Diguanylate cyclase DgcN |
| RA | 5,301,183 | A→C | 53.5% | intergenic (‑106/+3467) | recC ← / ← PP_RS08750 | RecBCD enzyme subunit RecC/tRNA‑Val |
| RA | 5,317,925 | G→A | 6.7% | V245I (GTC→ATC) | CJ019_05003 → | putative protein |
| RA | 5,548,612 | T→C | 5.7% | D18G (GAT→GGT) | hcp1_2 ← | Protein hcp1 |
| RA | 5,669,107 | T→C | 7.3% | K27R (AAG→AGG) | yceI ← | Protein YceI |
| RA | 5,689,794 | T→G | 48.2% | R228R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,689,824 | T→G | 45.1% | R238R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,695,008 | C→T | 12.3% | S551F (TCC→TTC) | phaC_1 → | Poly(3‑hydroxyalkanoate) polymerase subunitPhaC |
| RA | 5,757,234 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,992,483 | C→T | 8.2% | W166* (TGG→TGA) | ycaC_4 ← | putative hydrolase YcaC |
| RA | 6,016,995 | T→G | 51.9% | intergenic (+75/+69) | puuB_8 → / ← CJ019_05632 | Gamma‑glutamylputrescine oxidoreductase/hypothetical protein |
| RA | 6,021,519 | A→C | 36.0% | L58R (CTG→CGG) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,178,247 | G→C | 24.9% | L614V (CTG→GTG) | mnmG ← | tRNA uridine 5‑carboxymethylaminomethylmodification enzyme MnmG |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87974 | 88060 | 87 | 17 [14] | [15] 18 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 213560 | 213677 | 118 | 18 [15] | [11] 22 | [CJ019_00185] | [CJ019_00185] |
| * | * | ÷ | KT2440 | 346091 | 346223 | 133 | 17 [16] | [16] 18 | [btuD_1] | [btuD_1] |
| * | * | ÷ | KT2440 | 517190 | 517295 | 106 | 27 [14] | [14] 18 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 641246 | 641363 | 118 | 17 [16] | [16] 17 | [acoR_2] | [acoR_2] |
| * | * | ÷ | KT2440 | 711478 | 711559 | 82 | 18 [15] | [15] 17 | [thiO]–[aam] | [thiO],[aam] |
| * | * | ÷ | KT2440 | 1304746 | 1304852 | 107 | 17 [16] | [16] 19 | CJ019_01223/rapA | putative signaling protein/RNA polymerase‑associated protein RapA |
| * | * | ÷ | KT2440 | 1376289 | 1376338 | 50 | 17 [16] | [15] 17 | CJ019_01289 | hypothetical protein |
| * | * | ÷ | KT2440 | 1457225 | 1457334 | 110 | 18 [13] | [16] 17 | [algX] | [algX] |
| * | * | ÷ | KT2440 | 1499922 | 1500061 | 140 | 17 [16] | [16] 20 | [petC]–[sspA] | [petC],[sspA] |
| * | * | ÷ | KT2440 | 1585604 | 1585715 | 112 | 17 [14] | [15] 18 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | KT2440 | 1608688 | 1608794 | 107 | 17 [16] | [15] 17 | CJ019_01513 | hypothetical protein |
| * | * | ÷ | KT2440 | 1697643 | 1697738 | 96 | 18 [14] | [16] 17 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | KT2440 | 1705085 | 1705189 | 105 | 17 [16] | [14] 17 | ppc/adk | Phosphoenolpyruvate carboxylase/Adenylate kinase |
| * | * | ÷ | KT2440 | 1914560 | 1914652 | 93 | 20 [15] | [16] 17 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | KT2440 | 1923400 | 1923520 | 121 | 17 [15] | [16] 17 | [apeB] | [apeB] |
| * | * | ÷ | KT2440 | 2287020 | 2287129 | 110 | 17 [16] | [16] 19 | [CJ019_02168]–[CJ019_02169] | [CJ019_02168],[CJ019_02169] |
| * | * | ÷ | KT2440 | 2288824 | 2288926 | 103 | 17 [16] | [16] 17 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 2422917 | 2422993 | 77 | 17 [16] | [16] 19 | [ycbX] | [ycbX] |
| * | * | ÷ | KT2440 | 2467207 | 2467225 | 19 | 33 [4] | [10] 35 | CJ019_02325/tal | hypothetical protein/Transaldolase |
| * | * | ÷ | KT2440 | 3040201 | 3040304 | 104 | 17 [16] | [16] 17 | [pstB3] | [pstB3] |
| * | * | ÷ | KT2440 | 3046221 | 3046347 | 127 | 17 [16] | [15] 20 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | KT2440 | 3103923 | 3104012 | 90 | 17 [16] | [15] 22 | [CJ019_02919] | [CJ019_02919] |
| * | * | ÷ | KT2440 | 3145290 | 3145390 | 101 | 18 [16] | [15] 18 | livH_4 | High‑affinity branched‑chain amino acidtransport system permease protein LivH |
| * | * | ÷ | KT2440 | 3769400 | 3769474 | 75 | 17 [14] | [16] 17 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 4163793 | 4163866 | 74 | 17 [16] | [15] 17 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4346803 | 4346856 | 54 | 28 [15] | [16] 21 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | KT2440 | 4523638 | 4523729 | 92 | 17 [16] | [16] 17 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | KT2440 | 4734437 | 4734536 | 100 | 17 [16] | [16] 19 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | KT2440 | 4846217 | 4846381 | 165 | 17 [16] | [16] 17 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | KT2440 | 4883332 | 4883530 | 199 | 18 [16] | [13] 18 | [hyi]–[glxR] | [hyi],[glxR] |
| * | * | ÷ | KT2440 | 4944737 | 4944882 | 146 | 17 [16] | [16] 19 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5156292 | 5156448 | 157 | 17 [12] | [16] 18 | [CJ019_04852] | [CJ019_04852] |
| * | * | ÷ | KT2440 | 5188657 | 5188766 | 110 | 17 [16] | [15] 17 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | KT2440 | 5193435 | 5193554 | 120 | 21 [16] | [16] 20 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5250599 | 5250735 | 137 | 22 [13] | [16] 19 | [CJ019_04947]–[CJ019_04948] | [CJ019_04947],[CJ019_04948] |
| * | * | ÷ | KT2440 | 5331819 | 5331926 | 108 | 19 [12] | [15] 17 | [zraR] | [zraR] |
| * | * | ÷ | KT2440 | 5453344 | 5453446 | 103 | 18 [16] | [16] 17 | [lptE]–[holA] | [lptE],[holA] |
| * | * | ÷ | KT2440 | 5530837 | 5530938 | 102 | 18 [16] | [16] 20 | [nadE] | [nadE] |
| * | * | ÷ | KT2440 | 5551638 | 5551774 | 137 | 18 [16] | [13] 17 | CJ019_05227/purA | hypothetical protein/Adenylosuccinate synthetase |
| * | * | ÷ | KT2440 | 5727838 | 5727986 | 149 | 17 [16] | [16] 17 | [hutH] | [hutH] |
| * | * | ÷ | KT2440 | 5891553 | 5891653 | 101 | 18 [14] | [16] 17 | CJ019_05517/czcA_3 | hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA |
| * | * | ÷ | KT2440 | 5896919 | 5897041 | 123 | 19 [15] | [16] 20 | [CJ019_05521] | [CJ019_05521] |
| * | * | ÷ | KT2440 | 6074760 | 6074868 | 109 | 17 [16] | [14] 17 | [yeaD_2]–[CJ019_05690] | [yeaD_2],[CJ019_05690] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 2172773 = | 23 (0.410) | 9 (0.160) | 8/232 | NT | 28.3% | intergenic (‑50/+90) | CJ019_02061/CJ019_02062 | hypothetical protein/hypothetical protein |
| ? | KT2440 | = 3965293 | NA (NA) | intergenic (+31/‑349) | CJ019_03744/CJ019_00572 | IS66 family transposase ISPpu14/IS110 family transposase ISPpu10 | |||||
| * | ? | KT2440 | = 2172781 | 26 (0.470) | 8 (0.150) | 7/232 | NT | 23.7% | intergenic (‑58/+82) | CJ019_02061/CJ019_02062 | hypothetical protein/hypothetical protein |
| ? | KT2440 | 4479942 = | NA (NA) | intergenic (+171/‑99) | CJ019_04248/CJ019_03742 | hypothetical protein/hypothetical protein | |||||
| * | ? | KT2440 | 4918800 = | 1 (0.020) | 77 (1.420) | 44/228 | NT | 98.8% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 1 (0.020) | 46 (0.840) | 29/230 | NT | 97.9% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||
| * | ? | KT2440 | 5066463 = | 61 (1.100) | 5 (0.090) | 4/234 | NT | 7.6% | coding (328/684 nt) | CJ019_04758 | hypothetical protein |
| ? | KT2440 | = 5397613 | NA (NA) | coding (570/573 nt) | dpkA_2 | Delta(1)‑pyrroline‑2‑carboxylate/Delta(1)‑piperi deine‑2‑carboxylate reductase | |||||