| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 8 (0.150) | 24 (0.490) | 23/264 | 1.4 | 78.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 6 (0.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > CP009273/1204934‑1205221 | cagatgctgttgcggtattccacccccactgaatgattactgaatgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg < 1:637520‑M2/8‑1 (MQ=255) agatgcttttgcggcattccacccccactgaatgattactgattgatcgtggtggccagtcgtctccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa < 2:391968‑M2/9‑1 (MQ=255) gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa < 2:40814/149‑1 (MQ=255) ccgcactccacccccactgcatgattactgattgctcaataccaccacgcataaccggcatagccatgacaccggtgcgtcctaatgtagccgttgctgcattgagttttgctcctcctcccaaaccaaCGTTTATGAAAATGAAGaaa < 1:8204‑M2/20‑1 (MQ=255) gccattccacccccactgaatgatcactgattgctcaataccaccaatcataaccggtatagctatgaacccggtgcgtaccaatcaaacagttgtcgcattgagtttttctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 1:854818‑M2/21‑1 (MQ=255) ttccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 2:233553‑M2/25‑1 (MQ=255) ccacccccactgaatgattactgattgctcaataccaccaatcataaccggtagagctatgcaaccgctgcgtcctaatgtagccgttgctgcattgagttttgctccttctccccaaccaaCGTTTATGAAAAGGAAGAAATAACAAg > 2:545763‑M2/123‑149 (MQ=255) ccactgaatgattacggattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:509752‑M2/33‑1 (MQ=255) actgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 2:310612‑M2/35‑1 (MQ=255) actgattgctcaatacccccaatcataagcgttatagctatgctcagggtgctacctaatgtagccgttgctgcattgaggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 2:204962‑M2/46‑1 (MQ=255) ctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAATTGAAGAAATAACAAGCAAATGGCATCATTCCTGCt > 1:731711‑M2/103‑149 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 2:29376‑M2/102‑149 (MQ=255) tattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt < 1:423246‑M2/49‑1 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctggtgtagccgttgctgccttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAAAAATAAAAAGCAAATGGCATCATTCCTGCtttt > 2:30995‑M2/100‑149 (MQ=255) tgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAATCAAATGGCATCATTCCTGCTTTTAc < 1:508537‑M2/52‑1 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa > 1:254493‑M2/86‑149 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTCACTCAAAATGAAGAAATAACAAGCAAATGGCACCTTTCCCGCCTTTACCAGGGGGATTAAACATGc > 1:28886/1‑149 (MQ=255) agccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCAGCTTTAACCAGGGGGATTTAACATGc > 1:277407/1‑149 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttcgcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATGTAACGTGCTTATTGGCTATGTAcg > 2:255759‑M2/64‑149 (MQ=255) agcggCTGAAGGCCACGGAACCGGGACACCAACCGGTAATACAGAGCGTTGTCCTAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCCGCTTTTAACAGGGGGATTTCACATGCTTAATGCCTATGTaaga < 1:627633/146‑4 (MQ=255) ccggtgcggcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt < 1:336785‑M2/91‑1 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGGTTTAACATGCTTATTGGCTATGTACGCGTatcaagaact > 2:512847‑M2/51‑147 (MQ=255) aatgtagccgttgctgcattgagttttgctccttctcccaaaccgaCGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTTTTTACGCGTATCAAAAAAggagc > 1:101548‑M2/47‑147 (MQ=255) agccgttgctgcattgagttttgctccttcccccaaacccaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAac < 1:708899‑M2/108‑1 (MQ=255) gttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg < 2:254493‑M2/112‑1 (MQ=255) acCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGCGGGATCCAATGTGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt > 2:25605/1‑149 (MQ=255) atgTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTGACCAGGTGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 1:754031/147‑1 (MQ=255) ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAAGACCAGAACACAGATCTACAACGTAATgc < 2:546517‑M2/128‑1 (MQ=255) ttgctccttatgccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc < 2:25301‑M2/128‑1 (MQ=255) tgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGGAatggc > 1:726617‑M2/21‑147 (MQ=255) ctccTTCTCCCAAACAAACGTTTACGAAAAAGACGACATAACACGCAAAAGGCACCCTTACCGCTCAAACCAGAGCGATTGAACATGCCTACTCGACCTGTCTGCACCTCAACAAATGACCAGAACACCAATATACAACACAAGgcgca > 1:49612/3‑148 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 2:397625‑M2/134‑1 (MQ=255) tccaaaaccaaCGTTTATGAAAAGGAAGAAATAACAAGCAAAGAGCATCATTCCTGCTGTTACCAGGGGGAGTTAACATGCTTATTGGCTATGTACGCGGATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCGGAAgtgt > 1:880878‑M2/12‑149 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCGCAGTGTTATGTACCATGCCTATTCGCTATGTACGCGTATCAACAATTGCCCAGAACACAGATCTACAACGTATTGCGCTGAACtgtg > 2:432168‑M2/11‑149 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTCCAACGTAATGCGCTGAACtgtg > 1:478061‑M2/11‑149 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCATATTGACAGTTTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg > 2:650984‑M2/11‑149 (MQ=255) accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGa < 2:134356‑M2/144‑1 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc > 2:141694‑M2/3‑149 (MQ=255) aaCGTTTATGAAAATGAAGAAAACACAAGCAAATGGCCTCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATGAGCTATGTACGCGTAACAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACAGTGCAGGATGc > 1:178492‑M2/3‑149 (MQ=255) | TCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > CP009273/1204934‑1205221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |