New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2269346	3 (0.060)	45 (0.830)	36/296	0.6	93.8%	coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

GCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCT  >  CP009273/3576642‑3576934                                                                                                                                                   |                                                                                                                                                   gCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGCTCGGTGATTATAGCATTTCAATATTTACTTATGACATTAAAGGt                                                                                                                                                  <  1:411459/149‑1 (MQ=255)   ctggctcttCCAGATGCGTCCGTTAAAATCCTTGTTACCGTATAATAATTTTATATGAATAATGATGCTTTCATCTACCCTGGTCTATCAGACCGGTTAGTCATCTGGGATTATGGCATTTCAATATTTACTTATGACTTTAAAGGTGa                                                                                                                                                <  1:532613/142‑1 (MQ=255)    tctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGACATAATGATGATTTCATAAACCCTGATCTACAACAACGGTGAGTGATCGACGATTATAGCCTTTCAATATTTACTTATGACATTGAAgggggt                                                                                                                                               >  1:616495/1‑145 (MQ=255)     ctcGATTCCAGAACCTTCAGTTAAAACAATTCAAGGCCAAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                              >  2:437065/1‑149 (MQ=255)     ctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATAATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                              >  2:30494/1‑149 (MQ=255)     ctcGATTCCAGAACCTTCAGTTAAAAACCTTTATGCGAAAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                              <  2:466774/149‑1 (MQ=255)      tcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTCCAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgc                                                                                                                                             >  2:449488/1‑149 (MQ=255)         aTTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtgctgc                                                                                                                                          <  2:747631/149‑1 (MQ=255)          ttCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGcc                                                                                                                                         <  2:537486/149‑1 (MQ=255)              aGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGCCATTAAAGGTGATGCTGCAAAcg                                                                                                                                     >  1:312231/1‑148 (MQ=255)              aGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGGTGCCACCt                                                                                                                                     >  1:312028/1‑149 (MQ=255)              aGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACt                                                                                                                                     >  2:417341/1‑149 (MQ=255)              aGAACCTTCAGTTAAAAACATTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTAATTATGACATTAAAGGTGATGATGACAACt                                                                                                                                     >  1:312091/1‑149 (MQ=255)                      cAGTTAAAACCATTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGAtt                                                                                                                             <  1:814676/149‑1 (MQ=255)                          tAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgt                                                                                                                         <  1:129526/149‑1 (MQ=255)                           aaaaaCCTTTTTTTTTTAAATTAATTTAGAAGAAATAATAATGAATTCACAAACCCTGATCTACAAGAACGGTTAGTGATCGCGGATTATAACATCTCATTATTTATTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgtg                                                                                                                        >  1:350808/1‑149 (MQ=255)                            aaaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgtgt                                                                                                                       <  1:88543/149‑1 (MQ=255)                                ccTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTatga                                                                                                                   <  1:786619/149‑1 (MQ=255)                                    tttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGgt                                                                                                               <  2:805753/149‑1 (MQ=255)                                     tgtcattaaaataaTTTTAAAGAAATAATTATGATTTCATAACCCCTGATCTACAAGAACTGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTTATTTAGTGTATGATGgtg                                                                                                              <  1:576428/137‑1 (MQ=38)                                            aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGa                                                                                                       <  2:85036/149‑1 (MQ=255)                                            aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTAATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGATATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGAGTTTTTgc                                                                                                       >  1:582640/1‑148 (MQ=255)                                             gttGATTTTTATAGGAAGAATGCTGCTTTCAGAAGCCCTGTTCTACAGGAACGGTCTGCTTTCGGGGACTATCGCATTTCAGCATTTACTTCTGCCATTATCGGGGATGCGGCCAACTTACTGATTTAGTGTATCATGGTGTTTTTGAg                                                                                                      <  1:298736/147‑1 (MQ=12)                                             aaTGAATTTTATAGAAATAATGATGATTTCATAACCCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAg                                                                                                      <  2:50312/149‑1 (MQ=255)                                                gAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACCAGAAGGGTGAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTg                                                                                                   <  2:784076/149‑1 (MQ=255)                                                    tttATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTcc                                                                                               >  1:736197/1‑149 (MQ=255)                                                        taGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTg                                                                                           >  1:372948/1‑149 (MQ=255)                                                            aataatGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCAAGTGGCtt                                                                                       >  1:136842/1‑149 (MQ=255)                                                                  gatgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTCACTGATATAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGttt                                                                                 >  1:537073/1‑149 (MQ=255)                                                                    tgatTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCt                                                                               <  2:767506/149‑1 (MQ=255)                                                                           aTAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                                        <  2:562575/149‑1 (MQ=255)                                                                                 ccTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCcct                                                                  >  1:883092/1‑149 (MQ=255)                                                                                       cTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGtt                                                            >  2:732127/1‑149 (MQ=255)                                                                                        tACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTc                                                           >  2:481069/1‑149 (MQ=255)                                                                                         aaaaGGACGGTTAGTGCTCGGGGATTATAGCATTTCAATATTTACTTACGACATTAAAGGTGATGCGACCAACTTACTGATTGAGCGTATGATGGTGTTTTTGAGGTGTTCCAGTGGCTTCTGTTTCCATCAGCTGTCCCTCCTGTTCa                                                          <  1:294643/147‑1 (MQ=21)                                                                                           aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTAATGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGc                                                        >  2:787927/1‑149 (MQ=255)                                                                                             gAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTa                                                      >  1:110286/1‑149 (MQ=255)                                                                                              aaCGGTTAGTGATCGGGGATTATAGCATTTCAATATTGACTTATGACATTAAAGGTGATGCTGACAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAc                                                     >  2:577885/1‑149 (MQ=255)                                                                                               aCGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTGGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCGGCTAcg                                                    >  1:644558/1‑148 (MQ=255)                                                                                                   ttAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACg                                                >  2:459795/1‑149 (MQ=255)                                                                                                        gATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTTCCTCCTGTTCAGCTATCGGCggggag                                           >  1:177274/1‑147 (MQ=255)                                                                                                         aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                          >  1:402732/1‑149 (MQ=255)                                                                                                         aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                          <  1:449488/149‑1 (MQ=255)                                                                                                         aTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTGCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGggtgg                                          >  2:323798/1‑149 (MQ=255)                                                                                                            ggggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                                       <  1:704618/149‑1 (MQ=255)                                                                                                             gggATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCGCTCCTGTTCAGCTACTGACGGGGTGGTGCg                                      >  1:661391/1‑149 (MQ=255)                                                                                                                   ataGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTCCTCATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACgg                                <  2:871862/149‑1 (MQ=255)                                                                                                                       cATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaa                            <  2:530832/149‑1 (MQ=255)                                                                                                                        aTTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCaaaa                           >  2:553021/1‑149 (MQ=255)                                                                                                                                atTTACTTATGACATTAAAGGTGATGCTGCCAACTTGCTGATTTGGTGTATGATGGTGTTTTTGAGGTGATCCTGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCAccgcc                   >  2:250392/1‑149 (MQ=255)                                                                                                                                      ttATGACATTAAAGGTGATGCCGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAt             <  2:107038/149‑1 (MQ=255)                                                                                                                                       tATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATc            >  2:448040/1‑149 (MQ=38)                                                                                                                                        aTGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCa           <  1:30494/149‑1 (MQ=38)                                                                                                                                          gACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAgc         <  2:372948/149‑1 (MQ=35)                                                                                                                                            cATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAgcgc       <  2:230022/149‑1 (MQ=34)                                                                                                                                             aTTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGTACATCAGCGCt      >  2:19867/1‑149 (MQ=18)                                                                                                                                             aTTAAAGGTGAAACTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGCGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACGTCAgagca      >  1:6743/1‑148 (MQ=11)                                                                                                                                                 aaGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTAtct  <  2:350808/149‑1 (MQ=11)                                                                                                                                                   |                                                                                                                                                   GCCTCTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAGCGCTATCT  >  CP009273/3576642‑3576934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.