New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	45 (1.060)	38/296	0.1	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/360250‑360104 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTG  <  CP009273/360286‑360139                                                                                                                                                                                                                                                                                                           CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAA                                                                                                                                                    >  2:399605/1‑149  GAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAAT                                                                                                                                                   <  2:22374/149‑1         TGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAG                                                                                                                                            <  1:398768/149‑1          GGGCCTTTCGTTTTATCTGTTGTTTGCCGGTGCACGCTCACCAGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGG                                                                                                                                           <  1:227011/149‑1             CCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCAT                                                                                                                                        <  1:686715/149‑1                TTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAA                                                                                                                                     <  1:223161/149‑1                 TCGTTTTATCTGTTGNTTGNCNGNGNACGCACGCCGGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTGGCGAAGCAACGGCCCGGCGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCTGGGGAATTAATTCCtggcagttta                                                                                                                                      <  1:477813/149‑11                       TATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCCAATTGTCATTGTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAAC                                                                                                                              <  1:506447/149‑1                            GTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTGGTGCCCCGGGCATCAAAGAAAACGAAAG                                                                                                                         >  1:296224/1‑149                                      GGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA                                                                                                               <  2:595626/149‑1                                       GTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAA                                                                                                              <  1:197286/149‑1                                        TGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTCGCGGGCACGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAA                                                                                                             <  2:621123/149‑1                                               TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAGATAAAACGAAAGGCCCAGTCtttcgactgag                                                                                                      <  1:196929/149‑12                                               TCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAAATGCC‑‑CGTTATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCtttcgactgag                                                                                                      <  1:654211/149‑12                                                CTCCTGAGTAGGACAAATCCGCCGGGGGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGCGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGC                                                                                                     <  2:325434/149‑1                                                 TCCTGAGTAGGACAAATCCGCCGGGCGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACGGGGCC                                                                                                    >  2:514514/1‑149                                                    TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTGATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTT                                                                                                 >  2:483540/1‑149                                                     gaggcGGACCAGTCCGCCGGGAGCGTATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTC                                                                                                <  1:118687/144‑1                                                        TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCCGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCCCAGCCGAAAGACGCGGCCTCTCGTc                                                                                             >  1:199659/1‑148                                                        TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAGTTAATTCCCCGGGCATCAAATAAAACGAAATGCTCAGCCGAGAGACTGGGCATTACGTT                                                                                             >  1:406556/1‑149                                                        TAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTT                                                                                             <  2:49445/149‑1                                                           GACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA                                                                                          <  2:603571/149‑1                                                                         GAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCG                                                                            <  1:582956/149‑1                                                                                TTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGGTTTATCTGGTGTTTGACGGTGAACG                                                                     >  1:644981/1‑149                                                                                        TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGT                                                                          <  2:257048/136‑1                                                                                        TTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGT                                                                          >  1:257048/1‑136                                                                                               GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTGATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGACAGACTGGGCCTTCAGTTTTATCTGTTGTTGGTCGGTGAACGCTCTCCTGAGTAGGA                                                      <  1:483540/149‑1                                                                                               GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA                                                      <  1:514514/149‑1                                                                                               GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA                                                      >  2:179088/1‑149                                                                                                  ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCCAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGCTGAACGCCCTCCTGAGTAGGACAA                                                   >  1:628069/1‑149                                                                                                    GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGGATCAAATAAAACGAACGGATCATTCGAACGACTGGGCCTTTCGTTTGATCTGTTGTGTGTCGGTGAACGCTCTCCTGAGTAGGACAAAT                                                 >  2:512982/1‑149                                                                                                           AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAAGAAAACGAAAGGCACAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCAGAGGAGGACAACACCGCCcg                                          >  2:474311/1‑147                                                                                                              GTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAG                                       >  1:266848/1‑149                                                                                                                      CAGGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTTTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAGTTG                               >  1:286473/1‑149                                                                                                                        GGACGCCCGCCATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTGGGACAAATCCGCCGGGAGCGAATTTGAA                             >  2:631823/1‑149                                                                                                                                  CATAAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCATCAGCAGCACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAG                   >  1:647259/1‑149                                                                                                                                     AAACTGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAA                <  1:179088/149‑1                                                                                                                                         TGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAG                                                        <  1:89287/105‑1                                                                                                                                         TGCC‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAG                                                        >  2:89287/1‑105                                                                                                                                            ctggGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCC           >  2:285313/5‑149                                                                                                                                            C‑‑AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG         >  1:405624/1‑149                                                                                                                                                 GAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGGGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG      >  2:11679/1‑149                                                                                                                                                 GAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG      >  2:685371/1‑149                                                                                                                                                    TTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT   >  2:222037/1‑149                                                                                                                                                     TAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTG  <  1:222037/149‑1                                                                                                                                                                                                                                                                                                           CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCC‑‑AGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/360250‑360104 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTG  <  CP009273/360286‑360139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.