breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,295,9840CT51.5% 14.1 / 130.1 101intergenic (+190/+452)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,296,1910AC32.3% 23.9 / 19.2 31intergenic (+397/+245)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_0009134,296,1900AG30.0% 31.1 / 16.2 31intergenic (+396/+246)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein

Marginal new junction evidence (lowest skew 10 of 61 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1207805159 (0.920)40 (0.250) 33/484 4.8 22.7% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 123 (0.760)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1207790 =171 (0.990)19 (0.120) 18/484 8.3 11.8% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 124 (0.770)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 454269065 (0.380)10 (0.060) 10/498 11.6 11.3% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 94 (0.560)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4542682 =59 (0.340)6 (0.040) 6/498 13.7 7.4% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 94 (0.560)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 = 132659840 (0.230)5 (0.030) 5/498 14.3 12.1% coding (1853/1896 nt) yciQ enhancer of membrane protein expression; putative inner membrane protein
?NC_000913 1326635 = 34 (0.200)coding (1890/1896 nt) yciQ enhancer of membrane protein expression; putative inner membrane protein
* ? NC_000913 = 581362150 (0.870)18 (0.130)
+47 bp
3/422 14.4 10.6% coding (529/546 nt)
pseudogene (9/309 nt)
nohD
aaaD
DLP12 prophage; DNA packaging protein
pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related
?NC_000913 1635599 = 221 (1.280)coding (249/963 nt) stfQ Qin prophage; putative side tail fibre assembly protein
* ? NC_000913 4082687 =170 (0.980)4 (0.020) 4/498 15.0 2.4% coding (73/903 nt) fdoH formate dehydrogenase‑O, Fe‑S subunit
?NC_000913 4082706 = 167 (1.000)coding (54/903 nt) fdoH formate dehydrogenase‑O, Fe‑S subunit
* ? NC_000913 = 3528142146 (0.850)4 (0.020) 4/496 15.0 2.7% coding (1674/2136 nt) yrfF putative RcsCDB‑response attenuator, inner membrane protein
?NC_000913 = 3528152 145 (0.870)coding (1684/2136 nt) yrfF putative RcsCDB‑response attenuator, inner membrane protein
* ? NC_000913 = 4522490175 (1.010)4 (0.020) 4/500 15.1 2.5% coding (1605/1968 nt) yjhG putative dehydratase
?NC_000913 = 4522654 145 (0.870)coding (1441/1968 nt) yjhG putative dehydratase
* ? NC_000913 = 2206279198 (1.170)7 (0.040)
+GTT
4/500 15.1 3.4% coding (585/2280 nt) yehM uncharacterized protein
?NC_000913 2206280 = 198 (1.150)coding (586/2280 nt) yehM uncharacterized protein