mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.5% | 45.1 / 19.8 | 40 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 21.1% | 52.2 / 13.9 | 40 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.9% | 222.7 / 64.4 | 115 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 47 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2947467 | 61 (0.370) | 3 (0.030) | 3/296 | 12.0 | 7.0% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | 2947688 = | 41 (0.390) | intergenic (+5/+69) | metV/amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase | |||||
| * | ? | NC_000913 | 1828864 = | 143 (0.860) | 8 (0.050) | 8/444 | 12.1 | 5.4% | coding (871/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | NC_000913 | 1828903 = | 143 (0.900) | coding (832/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | 2012857 = | 173 (1.050) | 8 (0.050) | 7/442 | 12.6 | 4.4% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | NC_000913 | 2012911 = | 181 (1.140) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
| * | ? | NC_000913 | = 1242594 | 145 (0.880) | 6 (0.040) | 6/426 | 12.9 | 4.3% | coding (487/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | NC_000913 | = 1242576 | 134 (0.880) | coding (505/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| * | ? | NC_000913 | 4542682 = | 46 (0.280) | 6 (0.040) | 6/444 | 13.2 | 9.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 75 (0.470) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4054137 | 182 (1.100) | 6 (0.040) | 6/444 | 13.2 | 3.5% | coding (1142/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| ? | NC_000913 | = 4054157 | 158 (0.990) | coding (1122/1410 nt) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein | |||||
| * | ? | NC_000913 | = 3256322 | 128 (0.770) | 4 (0.030) | 4/440 | 14.4 | 3.1% | coding (330/1311 nt) | yhaM | putative L‑serine dehydratase alpha chain |
| ? | NC_000913 | 3256551 = | 128 (0.810) | coding (101/1311 nt) | yhaM | putative L‑serine dehydratase alpha chain | |||||
| * | ? | NC_000913 | 3037860 = | 165 (1.000) | 4 (0.030) | 4/440 | 14.4 | 2.7% | coding (247/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913 | 3037943 = | 131 (0.830) | coding (164/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | NC_000913 | = 4542690 | 47 (0.280) | 4 (0.030) | 4/444 | 14.5 | 6.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 75 (0.470) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4516891 = | 198 (1.200) | 4 (0.030) | 4/444 | 14.5 | 2.1% | coding (827/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4516925 = | 192 (1.210) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||