Tue Feb 25 19:56:06 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/54 -r /var/data/NC_000913_3.gb /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/Plate-3-BOP-1000-ACEF-END-4_S77_L004_R2_001.good.fq.gz