| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3423663 = | NA (NA) | 16 (0.310) | 12/280 | 3.8 | 24.5% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4171802 | 50 (0.970) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG > NC_000913/4171662‑4171919 | ccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGCCTGGGCCTTTCGTTTTATCt > 1:698922/1‑143 (MQ=25) caacttaCCCCATGTCTAACGCATAATTGAAACGCCGTAGCGCCGATTGTAGTGTGGGGTCTCCCCATGCGAGAGTATGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg < 1:907286/137‑1 (MQ=11) cACCTGGCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg < 1:405120/143‑1 (MQ=25) acttgcccccATGCCGAACTGTGAAGCGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTATGGAACTGCCAGGCATCATATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgt < 2:649389/137‑1 (MQ=11) ccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCCAATAAAACGAAAGGCTCAGCCCACAAACTGGGCCTTTCGTTTTATCTTTTGTTTGTc > 1:334728/1‑143 (MQ=11) cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg < 1:638278/143‑1 (MQ=35) gAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGAGTGGGGTCTCCCCATGCGAGAGGCGGGCACGCCAAGGCATCAAATAAAACGAAAGGCTCAGTCGCAAGGCAGGGCCTTTCGAGTTATCTGTTGTTAGTccgggacg > 2:907025/1‑136 (MQ=11) agcgtggcaggggcGTAGCGCTGTGGGTGGTGTGGGGTCTCTCCGGGCGAGGGGGGGTAACTGCCAGGCCTCAAATAAAACGAGAGGCTTGGTCGAAAGACTGGGCCTTTCGTTTTAGCTGTTGTTTGTCGGTGAACGCtctc < 2:380823/130‑1 (MQ=2) aGAAGTGACACGCCGTGGCGCCGAGGGTAGTGCGGGGTCGCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATATAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCtctc < 2:539466/143‑1 (MQ=11) aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAACTAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAGCGCTCTCCt > 2:886130/1‑143 (MQ=255) aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTccc > 2:458804/1‑142 (MQ=25) aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTg > 1:725016/1‑143 (MQ=35) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGCGAGCAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTACGTTTTATCGCTTGATTGTCGGTGAACGCTCTCCTGAGTa > 2:877921/1‑143 (MQ=11) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAGAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTa > 1:289777/1‑143 (MQ=25) aCGCCGGAGCGCCGAAGGCGATGTTGGGTCGCCCCATGCGAGAGCAGGGAACTGCCAGGCATCTGTTAAATCGAAAGGCTGAGTCGAGAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAgg < 2:219169/143‑1 (MQ=11) gtgcCGATGGTAGAGTGGGGACTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATcc < 1:608238/141‑1 (MQ=255) aGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCAACAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGCTTTATCTGATGTTAGTCGCCGCACGCTCTCCCGAGTAGCACAACACTGACGGGAgagc > 2:63154/1‑140 (MQ=11) tgtgGGGTCTCCCCATGGGAGAGTAGGGAACTGCAAGGCATCAAATAACACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAt < 1:77045/143‑1 (MQ=255) tgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCTGAAGCGGAttt > 2:689311/1‑143 (MQ=21) tgGCGTCTCACCATGAGTGAGTAGGGAACTGCCAGGCATCAAATAAAATGTGAGGGTGAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAttt < 2:216910/143‑1 (MQ=11) ggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGaa < 1:754152/143‑1 (MQ=34) gTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGTGCTGTTTTGAAc > 2:632794/1‑143 (MQ=255) gTCCCCCCATCCGGGCGCAGGGAACGGAGAGGCATCAGATAAAACGGAGGGCTGAGTCGGGAGGCTGGGCGGGTCGTGTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGGAGGACAAATCCGCCGGGAGCGGATTTGAAc < 2:263599/143‑1 (MQ=0) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt < 1:759210/143‑1 (MQ=35) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt > 2:851225/1‑143 (MQ=35) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTAGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGtt > 1:470878/1‑143 (MQ=21) cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTTAACGTTgt > 1:545911/1‑142 (MQ=18) cccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAATGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAACCACCGGAAGCAGATATGAAccatac > 2:113699/1‑138 (MQ=11) ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCg > 1:200490/1‑143 (MQ=32) cATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACCAATCCGCCGGGAGCGGATTTGAACGTTGCGa > 2:38444/1‑143 (MQ=17) aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGaa < 1:846940/143‑1 (MQ=32) agTCGGGAACTCCCAGGCATCAAATAAGACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACgg < 1:359363/143‑1 (MQ=12) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAGATCCGCCGGGAGCGGGTTGGGACATTTCTAAGCGACGGCCCGGAGGGt > 1:334967/1‑143 (MQ=11) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACCGCCCGGCGGGt > 2:666264/1‑143 (MQ=17) gCCAGGCAGCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTg < 1:154367/143‑1 (MQ=17) cAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGGAGCAACGGCCCGGCGGGTgga > 1:515428/1‑142 (MQ=17) agccATCAAATCAAAGGAAAGGGGCGGTCGAAAGACTGGGCCGTGCGGTGTAGGGGTGGTTTGTCGGTGAACGCTCGCCTGAGTAGGACAAATCCGCCGGGAGCGGAGTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCg < 2:716996/140‑1 (MQ=11) aGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTGCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGCACCTTGCGTAGCCACGGCCCCGAGCGTGGCg > 1:66754/1‑143 (MQ=11) gCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAAGCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCggg < 1:385020/143‑1 (MQ=17) aagtAAACCGAACGGCTCAGTCGAAAGACTGGGTCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAATAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGa < 2:644214/140‑1 (MQ=11) aaaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATCTGAACGTTGCGGAGCCACGGCCCGGAGGGGGGCGGGCAggg > 2:781353/1‑142 (MQ=255) aaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACACATCCGTAGCGAACGGATTGGAACGTTGCGAACCAACGGCCCGGCGCGTGGCGCGCAGGAc > 1:659269/1‑143 (MQ=11) aaTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAc > 2:758727/1‑143 (MQ=32) aTAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGACCGTTGCGAAGCACCCGCCCGGAGGGGGGCGGGCAGGAcg > 2:372166/1‑143 (MQ=255) aaaCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgccc < 1:883595/143‑1 (MQ=32) caCGAAAGGCTCAGTCGAAAGACTGGGCCTTGCGTTTTAGCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcgcccg < 1:10870/142‑1 (MQ=17) caGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATa < 1:877921/142‑1 (MQ=17) tCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGGGGGACGCACGCCATAAACTg > 2:860365/1‑143 (MQ=255) aGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCAGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCCTaacgcgcc > 2:597149/1‑137 (MQ=11) tCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGCTTTGAACGTTGCGAAGCAACGGCCCGGGGGGTGGCGGGCAGGACGCCCGCCATACACTGCCAg > 1:188477/1‑143 (MQ=12) | CCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAG > NC_000913/4171662‑4171919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |