mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 32,190 | T→C | 21.0% | I458I (ATT→ATC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 34,264 | A→G | 5.4% | intergenic (+226/‑36) | carB → / → caiF | carbamoyl‑phosphate synthase large subunit/cai operon transcriptional activator |
| RA | 89,509 | C→A | 100% | A537E (GCG→GAG) | ftsI → | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| RA | 142,500 | T→G | 16.0% | Y311* (TAT→TAG) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 370,422 | A→G | 10.8% | intergenic (+85/‑493) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,428 | T→C | 13.0% | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,442 | T→C | 16.8% | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,576 | Δ1 bp | 7.0% | intergenic (+239/‑339) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 372,863 | C→T | 5.4% | intergenic (+96/+128) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 476,862 | G→T | 100% | Q1000K (CAG→AAG) | acrB ← | multidrug efflux system protein |
| JC JC | 481,433 | IS5 (+) +4 bp | 100% | coding (217‑220/648 nt) | acrR → | transcriptional repressor |
| RA | 619,308 | T→C | 20.9% | E220G (GAA→GGA) | fepB ← | iron‑enterobactin transporter subunit |
| RA | 714,857 | G→A | 14.4% | H354Y (CAT→TAT) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 754,454 | Δ1 bp | 22.2% | coding (293/2802 nt) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 853,124 | C→T | 12.2% | intergenic (+113/+128) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
| RA | 853,129 | G→T | 13.2% | intergenic (+118/+123) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
| RA | 853,131 | A→G | 13.2% | intergenic (+120/+121) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
| RA | 853,132 | C→T | 13.2% | intergenic (+121/+120) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
| RA | 853,133 | T→C | 13.2% | intergenic (+122/+119) | ybiT → / ← ybiU | putative transporter subunit of ABC superfamily: ATP‑binding component/DUF1479 family protein |
| RA | 2,209,199 | Δ1 bp | 9.8% | coding (64/108 nt) | yohO → | putative membrane protein |
| RA | 2,209,200 | Δ1 bp | 10.0% | coding (65/108 nt) | yohO → | putative membrane protein |
| RA | 2,209,201 | Δ1 bp | 9.5% | coding (66/108 nt) | yohO → | putative membrane protein |
| RA | 2,209,288 | Δ1 bp | 10.3% | coding (668/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,289 | Δ1 bp | 10.3% | coding (667/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,290 | Δ1 bp | 10.3% | coding (666/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,291 | Δ1 bp | 10.3% | coding (665/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,292 | Δ1 bp | 10.5% | coding (664/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,209,293 | Δ1 bp | 10.5% | coding (663/732 nt) | yehW ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,307,475 | T→A | 10.3% | F170Y (TTT→TAT) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 4,094,597 | G→A | 100% | Q103* (CAG→TAG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,278,828 | G→T | 11.0% | W379C (TGG→TGT) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,364,401 | T→A | 7.5% | intergenic (‑350/+45) | yjeJ ← / ← epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| RA | 4,364,406 | A→C | 7.5% | intergenic (‑355/+40) | yjeJ ← / ← epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 71882 | 19 (0.730) | 6 (0.250) | 5/306 | NT | 17.9% | coding (86/984 nt) | thiB | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer |
| ? | CP009273 | = 72017 | 37 (1.510) | intergenic (‑50/+114) | thiB/sgrR | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer/transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
| * | ? | CP009273 | = 113555 | 14 (0.540) | 3 (0.120) | 3/306 | NT | 13.9% | coding (32/1386 nt) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| ? | CP009273 | = 113694 | 24 (0.980) | coding (343/441 nt) | ppdD | putative prepilin peptidase‑dependent pilin | |||||
| * | ? | CP009273 | 220899 = | NA (NA) | 4 (0.160) | 4/310 | NT | NA | noncoding (642/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221423 = | NA (NA) | noncoding (1166/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 239496 | 19 (0.730) | 12 (0.480) | 5/310 | NT | 35.7% | coding (295/2445 nt) | fadE | acyl coenzyme A dehydrogenase |
| ? | CP009273 | = 239679 | 25 (1.010) | coding (112/2445 nt) | fadE | acyl coenzyme A dehydrogenase | |||||
| * | ? | CP009273 | 279415 = | 12 (0.460) | 3 (0.120) | 3/314 | NT | 21.7% | coding (504/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | CP009273 | 279464 = | 10 (0.400) | coding (553/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||
| * | ? | CP009273 | 311112 = | NA (NA) | 10 (0.420) | 8/298 | NT | NA | coding (111/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311338 = | NA (NA) | coding (41/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 338617 = | 23 (0.890) | 3 (0.120) | 3/318 | NT | 12.9% | coding (23/1050 nt) | yahK | aldehyde reductase, NADPH‑dependent, Zn‑containing, broad specificity |
| ? | CP009273 | 339526 = | 18 (0.710) | coding (932/1050 nt) | yahK | aldehyde reductase, NADPH‑dependent, Zn‑containing, broad specificity | |||||
| * | ? | CP009273 | = 354947 | 15 (0.580) | 5 (0.210) | 4/294 | NT | 21.5% | coding (438/660 nt) | cynT | carbonic anhydrase |
| ? | CP009273 | = 355075 | 23 (0.980) | coding (566/660 nt) | cynT | carbonic anhydrase | |||||
| * | ? | CP009273 | 360104 = | 17 (0.660) | 29 (1.120) | 19/324 | NT | 67.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | 11 (0.420) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370378 = | NA (NA) | 13 (0.530) | 9/308 | NT | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | 372785 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 376990 = | NA (NA) | 5 (0.200) | 4/308 | NT | NA | coding (184/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | 377628 = | NA (NA) | coding (499/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 377609 | NA (NA) | 9 (0.360) | 7/312 | NT | NA | coding (480/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | = 377702 | NA (NA) | coding (573/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 383426 = | 32 (1.230) | 3 (0.120) | 3/312 | NT | 9.0% | coding (176/852 nt) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent |
| ? | CP009273 | 383642 = | 30 (1.200) | coding (392/852 nt) | tauD | taurine dioxygenase, 2‑oxoglutarate‑dependent | |||||
| * | ? | CP009273 | 530858 = | 30 (1.160) | 4 (0.160) | 4/306 | NT | 15.3% | coding (1487/1782 nt) | gcl | glyoxylate carboligase |
| ? | CP009273 | 531039 = | 16 (0.650) | coding (1668/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | CP009273 | 597094 = | 20 (0.770) | 3 (0.120) | 3/308 | NT | 11.5% | coding (2925/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | CP009273 | 597215 = | 27 (1.100) | coding (3046/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | CP009273 | 603489 = | NA (NA) | 17 (0.780) | 10/272 | NT | 41.1% | intergenic (+45/‑32) | hokE/insL1 | toxic polypeptide, small/IS186 transposase |
| ? | CP009273 | 604782 = | 29 (1.120) | intergenic (+149/+133) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | CP009273 | = 713867 | 24 (0.930) | 4 (0.160) | 4/304 | NT | 15.0% | coding (2050/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| ? | CP009273 | = 714503 | 23 (0.950) | coding (1414/2199 nt) | speF | ornithine decarboxylase isozyme, inducible | |||||
| * | ? | CP009273 | 719857 = | 16 (0.620) | 4 (0.160) | 3/308 | NT | 21.5% | coding (14/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 720319 = | 14 (0.570) | coding (117/573 nt) | kdpC | potassium translocating ATPase, subunit C | |||||
| * | ? | CP009273 | 725128 = | 22 (0.850) | 5 (0.210) | 4/302 | NT | 19.6% | coding (90/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | 725309 = | NA (NA) | coding (271/4194 nt) | rhsC | Rhs family putative polymorphic toxin | |||||
| * | ? | CP009273 | = 726872 | 33 (1.270) | 3 (0.120) | 3/308 | NT | 7.8% | coding (1834/4194 nt) | rhsC | Rhs family putative polymorphic toxin |
| ? | CP009273 | = 3757455 | 40 (1.620) | coding (1913/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 729684 | 24 (0.930) | 3 (0.120) | 3/318 | NT | 10.2% | pseudogene (96/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 729846 | 29 (1.140) | pseudogene (258/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
| * | ? | CP009273 | 736430 = | NA (NA) | 7 (0.280) | 7/312 | NT | 25.0% | noncoding (21/106 nt) | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 736493 = | 21 (0.840) | noncoding (84/106 nt) | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 773498 = | 24 (0.930) | 3 (0.120) | 3/310 | NT | 11.3% | coding (303/1293 nt) | tolB | periplasmic protein |
| ? | CP009273 | 773668 = | 24 (0.970) | coding (473/1293 nt) | tolB | periplasmic protein | |||||
| * | ? | CP009273 | 797577 = | 19 (0.730) | 3 (0.120) | 3/306 | NT | 15.4% | coding (235/1434 nt) | ybhI | putative transporter |
| ? | CP009273 | 798339 = | 15 (0.610) | coding (997/1434 nt) | ybhI | putative transporter | |||||
| * | ? | CP009273 | = 814223 | 21 (0.810) | 10 (0.410) | 7/304 | NT | 38.0% | coding (198/486 nt) | moaC | molybdopterin biosynthesis, protein C |
| ? | CP009273 | = 814331 | 13 (0.530) | coding (306/486 nt) | moaC | molybdopterin biosynthesis, protein C | |||||
| * | ? | CP009273 | = 853142 | NA (NA) | 7 (0.280) | 3/310 | NT | 14.6% | noncoding (71/98 nt) | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3556963 | 41 (1.650) | noncoding (22/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 1203246 = | 14 (0.540) | 24 (1.030) | 21/292 | NT | 71.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 7 (0.300) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 13 (0.500) | 17 (0.730) | 17/292 | NT | 64.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 7 (0.300) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1381355 | 18 (0.690) | 4 (0.160) | 4/312 | NT | 26.4% | coding (379/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| ? | CP009273 | = 1381505 | 5 (0.200) | coding (529/1542 nt) | tyrR | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase | |||||
| * | ? | CP009273 | = 1396301 | 5 (0.190) | 4 (0.170) | 4/302 | NT | 33.8% | noncoding (258/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 1396478 | 11 (0.460) | noncoding (435/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 1439090 | 18 (0.690) | 3 (0.120) | 3/306 | NT | 12.5% | coding (1783/2640 nt) | ydbH | putative membrane‑anchored protein, function unknown |
| ? | CP009273 | = 1441009 | 25 (1.020) | coding (532/906 nt) | feaR | transcriptional activator for tynA and feaB | |||||
| * | ? | CP009273 | 1445749 = | 13 (0.500) | 4 (0.160) | 4/314 | NT | 21.9% | intergenic (‑143/+105) | tynA/paaZ | tyramine oxidase, copper‑requiring/fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| ? | CP009273 | 1445956 = | 16 (0.640) | coding (1944/2046 nt) | paaZ | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase | |||||
| * | ? | CP009273 | 1456346 = | 22 (0.850) | 6 (0.250) | 4/300 | NT | 21.7% | coding (1197/1206 nt) | paaJ | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| ? | CP009273 | 1456480 = | 23 (0.960) | coding (99/1314 nt) | paaK | phenylacetyl‑CoA ligase | |||||
| * | ? | CP009273 | = 1518441 | 16 (0.620) | 3 (0.120) | 3/318 | NT | 14.7% | coding (878/1062 nt) | yncE | ATP‑binding protein, periplasmic, function unknown |
| ? | CP009273 | = 1518594 | 19 (0.750) | coding (1031/1062 nt) | yncE | ATP‑binding protein, periplasmic, function unknown | |||||
| * | ? | CP009273 | = 1651214 | 32 (1.230) | 6 (0.240) | 4/314 | NT | 17.4% | noncoding (372/706 nt) | IS2 | repeat region |
| ? | CP009273 | = 1651405 | 26 (1.040) | noncoding (563/706 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 1704330 = | 22 (0.850) | 4 (0.160) | 4/304 | NT | 16.4% | coding (932/1059 nt) | rsxD | SoxR iron‑sulfur cluster reduction factor component; putative membrane protein of electron transport complex |
| ? | CP009273 | 1704546 = | 20 (0.820) | coding (86/621 nt) | rsxG | SoxR iron‑sulfur cluster reduction factor component; putative membrane protein of electron transport complex | |||||
| * | ? | CP009273 | 1774549 = | 12 (0.460) | 4 (0.160) | 3/310 | NT | 29.1% | coding (676/765 nt) | ydiQ | putative electron transfer flavoprotein subunit |
| ? | CP009273 | 1774722 = | 8 (0.320) | coding (65/939 nt) | ydiR | putative electron transfer flavoprotein, FAD‑binding subunit | |||||
| * | ? | CP009273 | 2168479 = | 27 (1.040) | 3 (0.120) | 3/308 | NT | 9.0% | coding (50/453 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | CP009273 | 2168560 = | 35 (1.420) | coding (1241/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit | |||||
| * | ? | CP009273 | = 2201665 | 20 (0.770) | 3 (0.120) | 3/304 | NT | 12.8% | coding (220/1137 nt) | yehP | VMA domain putative YehL ATPase stimulator |
| ? | CP009273 | = 2202136 | 22 (0.910) | coding (691/1137 nt) | yehP | VMA domain putative YehL ATPase stimulator | |||||
| * | ? | CP009273 | = 2209201 | 30 (1.160) | 8 (0.320) | 3/310 | NT | 23.0% | coding (66/108 nt) | yohO | putative membrane protein |
| ? | CP009273 | = 2209293 | 25 (1.010) | coding (663/732 nt) | yehW | inner membrane putative ABC superfamily transporter permease | |||||
| * | ? | CP009273 | 2230034 = | NA (NA) | 4 (0.170) | 4/294 | NT | 16.7% | noncoding (22/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230092 = | 20 (0.850) | noncoding (80/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | 2237870 = | 27 (1.040) | 9 (0.360) | 4/314 | NT | 24.6% | coding (482/837 nt) | yeiG | S‑formylglutathione hydrolase |
| ? | CP009273 | 2238139 = | 29 (1.150) | coding (751/837 nt) | yeiG | S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | = 2280121 | 17 (0.660) | 4 (0.160) | 3/304 | NT | 13.3% | pseudogene (2273/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| ? | CP009273 | = 2280376 | 36 (1.480) | pseudogene (2018/2525 nt) | yejO | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system | |||||
| * | ? | CP009273 | 2284702 = | 22 (0.850) | 4 (0.160) | 3/310 | NT | 15.4% | noncoding (71/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | CP009273 | 2284751 = | 23 (0.930) | noncoding (120/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 2284708 | 23 (0.890) | 5 (0.200) | 3/310 | NT | 18.2% | noncoding (77/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | CP009273 | = 2284743 | 23 (0.930) | noncoding (112/199 nt) | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 2322526 | 25 (0.960) | 9 (0.370) | 7/306 | NT | 31.2% | coding (751/1650 nt) | yfaQ | tandem DUF2300 domain protein, putative host defense protein |
| ? | CP009273 | = 2322885 | 16 (0.650) | coding (392/1650 nt) | yfaQ | tandem DUF2300 domain protein, putative host defense protein | |||||
| * | ? | CP009273 | = 2337568 | 32 (1.230) | 4 (0.160) | 3/306 | NT | 16.3% | coding (81/3753 nt) | yfaL | adhesin |
| ? | CP009273 | = 2339234 | 11 (0.450) | coding (891/2286 nt) | nrdA | ribonucleoside‑diphosphate reductase 1, alpha subunit | |||||
| * | ? | CP009273 | 2481124 = | 34 (1.310) | 5 (0.200) | 5/314 | NT | 13.2% | coding (3272/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| ? | CP009273 | 2481218 = | 33 (1.310) | coding (3366/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA | |||||
| * | ? | CP009273 | = 2491587 | 16 (0.620) | 5 (0.210) | 4/302 | NT | 23.9% | coding (188/1239 nt) | alaC | valine‑pyruvate aminotransferase 3 |
| ? | CP009273 | = 2491794 | 17 (0.700) | intergenic (‑20/‑356) | alaC/ypdA | valine‑pyruvate aminotransferase 3/sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system | |||||
| * | ? | CP009273 | 2561986 = | 12 (0.460) | 5 (0.200) | 5/312 | NT | 29.8% | coding (885/1188 nt) | eutG | ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol |
| ? | CP009273 | 2562051 = | 12 (0.480) | coding (820/1188 nt) | eutG | ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol | |||||
| * | ? | CP009273 | = 2638679 | 12 (0.460) | 6 (0.240) | 5/308 | NT | 30.5% | coding (2006/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2638736 | 16 (0.650) | coding (1949/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
| * | ? | CP009273 | 2665804 = | 16 (0.620) | 8 (0.330) | 6/306 | NT | 30.7% | coding (399/1203 nt) | hcaD | phenylpropionate dioxygenase, ferredoxin reductase subunit |
| ? | CP009273 | 2665937 = | 21 (0.860) | coding (532/1203 nt) | hcaD | phenylpropionate dioxygenase, ferredoxin reductase subunit | |||||
| * | ? | CP009273 | 2683569 = | 27 (1.040) | 3 (0.120) | 3/312 | NT | 10.9% | coding (889/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| ? | CP009273 | 2683917 = | 23 (0.920) | coding (541/1428 nt) | glrK | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR | |||||
| * | ? | CP009273 | 2686794 = | 16 (0.620) | 4 (0.160) | 3/310 | NT | 19.4% | coding (2109/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | CP009273 | 2686924 = | 18 (0.730) | coding (1979/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | CP009273 | 2697456 = | 20 (0.770) | 6 (0.250) | 4/298 | NT | 21.7% | intergenic (‑34/+238) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | CP009273 | 2697550 = | 25 (1.050) | intergenic (‑128/+144) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | CP009273 | = 2697468 | 20 (0.770) | 4 (0.170) | 3/298 | NT | 15.6% | intergenic (‑46/+226) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) |
| ? | CP009273 | = 2697536 | 25 (1.050) | intergenic (‑114/+158) | rnc/lepB | RNase III/leader peptidase (signal peptidase I) | |||||
| * | ? | CP009273 | 2766599 = | 33 (1.270) | 4 (0.160) | 4/312 | NT | 9.7% | intergenic (‑58/‑78) | yfjV/yfjW | pseudogene, CP4‑57 prophage;Phage or Prophage Related; putative pump protein/CP4‑57 prophage; putative inner membrane protein |
| ? | CP009273 | 2766875 = | 43 (1.720) | coding (199/1704 nt) | yfjW | CP4‑57 prophage; putative inner membrane protein | |||||
| * | ? | CP009273 | = 2784916 | 23 (0.890) | 6 (0.250) | 4/302 | NT | 18.9% | coding (285/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| ? | CP009273 | = 2785027 | 30 (1.240) | coding (396/1449 nt) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent | |||||
| * | ? | CP009273 | 2787413 = | NA (NA) | 6 (0.240) | 4/312 | NT | 12.5% | noncoding (27/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2787500 = | 42 (1.680) | noncoding (114/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | = 2853392 | 24 (0.930) | 6 (0.250) | 6/306 | NT | 17.7% | coding (274/657 nt) | pphB | serine/threonine‑specific protein phosphatase 2 |
| ? | CP009273 | = 2853525 | 33 (1.350) | coding (407/657 nt) | pphB | serine/threonine‑specific protein phosphatase 2 | |||||
| * | ? | CP009273 | = 2934099 | 20 (0.770) | 7 (0.280) | 4/316 | NT | 21.1% | coding (504/1101 nt) | rlmM | 23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | CP009273 | = 2934171 | 33 (1.310) | coding (432/1101 nt) | rlmM | 23S rRNA C2498 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | CP009273 | 2966073 = | 22 (0.850) | 9 (0.370) | 7/306 | NT | 32.9% | coding (1149/1194 nt) | lplT | lysophospholipid transporter |
| ? | CP009273 | 2966170 = | 16 (0.650) | coding (1052/1194 nt) | lplT | lysophospholipid transporter | |||||
| * | ? | CP009273 | = 3064783 | 19 (0.730) | 6 (0.240) | 4/308 | NT | 25.5% | intergenic (‑180/+35) | fbaA/pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| ? | CP009273 | = 3064826 | 17 (0.690) | coding (1156/1164 nt) | pgk | phosphoglycerate kinase | |||||
| * | ? | CP009273 | 3078498 = | 10 (0.390) | 13 (0.500) | 6/322 | NT | 44.9% | coding (773/1977 nt) | speA | biosynthetic arginine decarboxylase, PLP‑binding |
| ? | CP009273 | 3078590 = | 22 (0.850) | coding (681/1977 nt) | speA | biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | CP009273 | = 3122383 | 33 (1.270) | 4 (0.170) | 4/302 | NT | 13.2% | coding (753/765 nt) | glcC | glycolate‑inducible glc operon transcriptional repressor; autorepressor |
| ? | CP009273 | = 3122500 | 22 (0.910) | pseudogene (1003/1101 nt) | yghO | pseudogene, DNA‑binding transcriptional regulator homology | |||||
| * | ? | CP009273 | = 3128772 | 24 (0.930) | 10 (0.410) | 6/306 | NT | 27.5% | coding (959/1500 nt) | pitB | phosphate transporter |
| ? | CP009273 | = 3128845 | 30 (1.230) | coding (886/1500 nt) | pitB | phosphate transporter | |||||
| * | ? | CP009273 | 3209391 = | 28 (1.080) | 6 (0.240) | 4/308 | NT | 19.5% | coding (460/765 nt) | yqjH | putative siderophore interacting protein |
| ? | CP009273 | 3209506 = | 23 (0.930) | coding (345/765 nt) | yqjH | putative siderophore interacting protein | |||||
| * | ? | CP009273 | 3272181 = | 34 (1.310) | 14 (0.580) | 5/300 | NT | 32.4% | intergenic (‑157/‑92) | agaR/kbaZ | transcriptional repressor of the aga regulon/tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| ? | CP009273 | 3272241 = | 27 (1.130) | intergenic (‑217/‑32) | agaR/kbaZ | transcriptional repressor of the aga regulon/tagatose 6‑phosphate aldolase 1, kbaZ subunit | |||||
| * | ? | CP009273 | 3300667 = | 31 (1.200) | 7 (0.290) | 5/304 | NT | 20.3% | coding (553/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | CP009273 | 3300771 = | 26 (1.070) | coding (449/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | CP009273 | 3323430 = | 26 (1.000) | 4 (0.160) | 3/308 | NT | 13.9% | coding (1109/1434 nt) | dacB | D‑alanyl‑D‑alanine carboxypeptidase |
| ? | CP009273 | 3323542 = | 25 (1.020) | coding (1221/1434 nt) | dacB | D‑alanyl‑D‑alanine carboxypeptidase | |||||
| * | ? | CP009273 | = 3369306 | 25 (0.960) | 4 (0.160) | 4/310 | NT | 15.1% | coding (1079/1368 nt) | dcuD | putative transporter |
| ? | CP009273 | = 3369399 | 21 (0.850) | coding (1172/1368 nt) | dcuD | putative transporter | |||||
| * | ? | CP009273 | = 3549972 | 4 (0.150) | 4 (0.160) | 4/306 | NT | 33.6% | coding (237/1017 nt) | rtcA | RNA 3'‑terminal phosphate cyclase |
| ? | CP009273 | = 3550084 | 12 (0.490) | coding (125/1017 nt) | rtcA | RNA 3'‑terminal phosphate cyclase | |||||
| * | ? | CP009273 | 3564484 = | 31 (1.200) | 3 (0.120) | 3/306 | NT | 9.5% | coding (196/1974 nt) | glgX | glycogen debranching enzyme |
| ? | CP009273 | 3564644 = | 28 (1.140) | coding (36/1974 nt) | glgX | glycogen debranching enzyme | |||||
| * | ? | CP009273 | 3604225 = | 21 (0.810) | 5 (0.200) | 4/306 | NT | 22.8% | coding (869/1218 nt) | yhhS | putative arabinose efflux transporter |
| ? | CP009273 | 3604358 = | 14 (0.570) | coding (736/1218 nt) | yhhS | putative arabinose efflux transporter | |||||
| * | ? | CP009273 | 3667490 = | 29 (1.120) | 4 (0.160) | 3/304 | NT | 12.9% | coding (769/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter |
| ? | CP009273 | 3667674 = | 27 (1.110) | coding (953/1014 nt) | yhjD | inner membrane putative BrbK family alternate lipid exporter | |||||
| * | ? | CP009273 | = 3697938 | 33 (1.270) | 4 (0.160) | 4/310 | NT | 11.5% | coding (184/903 nt) | dppC | dipeptide/heme transporter |
| ? | CP009273 | = 3697983 | 30 (1.210) | coding (139/903 nt) | dppC | dipeptide/heme transporter | |||||
| * | ? | CP009273 | = 3717914 | 16 (0.620) | 6 (0.250) | 4/300 | NT | 23.2% | coding (765/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit |
| ? | CP009273 | = 3718224 | 25 (1.040) | coding (455/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit | |||||
| * | ? | CP009273 | = 3727553 | 17 (0.660) | 4 (0.160) | 4/312 | NT | 20.3% | coding (474/1182 nt) | xylH | D‑xylose ABC transporter permease subunit |
| ? | CP009273 | = 3727658 | 15 (0.600) | coding (579/1182 nt) | xylH | D‑xylose ABC transporter permease subunit | |||||
| * | ? | CP009273 | 3757220 = | 4 (0.150) | 4 (0.170) | 3/302 | NT | 20.7% | coding (1678/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3757360 = | 27 (1.120) | coding (1818/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | CP009273 | = 3849876 | 25 (0.960) | 4 (0.160) | 4/310 | NT | 13.4% | coding (102/450 nt) | yidI | inner membrane protein |
| ? | CP009273 | = 3849974 | 28 (1.130) | coding (200/450 nt) | yidI | inner membrane protein | |||||
| * | ? | CP009273 | = 3862454 | 33 (1.270) | 3 (0.120) | 3/314 | NT | 8.2% | coding (216/1248 nt) | yidR | DUF3748 family protein |
| ? | CP009273 | = 3862544 | 35 (1.390) | coding (126/1248 nt) | yidR | DUF3748 family protein | |||||
| * | ? | CP009273 | = 3879813 | 35 (1.350) | 4 (0.160) | 3/318 | NT | 9.8% | coding (1378/1647 nt) | yidC | membrane protein insertase |
| ? | CP009273 | = 3879962 | 39 (1.530) | coding (1527/1647 nt) | yidC | membrane protein insertase | |||||
| * | ? | CP009273 | 3949028 = | 18 (0.690) | 8 (0.320) | 8/308 | NT | 38.9% | coding (338/1545 nt) | ilvA | L‑threonine dehydratase, biosynthetic; also known as threonine deaminase |
| ? | CP009273 | 3949257 = | 8 (0.320) | coding (567/1545 nt) | ilvA | L‑threonine dehydratase, biosynthetic; also known as threonine deaminase | |||||
| * | ? | CP009273 | = 3966354 | 22 (0.850) | 5 (0.200) | 3/310 | NT | 20.0% | coding (473/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase |
| ? | CP009273 | = 3966438 | 19 (0.770) | coding (557/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase | |||||
| * | ? | CP009273 | = 3966694 | 29 (1.120) | 4 (0.160) | 3/310 | NT | 14.6% | coding (813/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase |
| ? | CP009273 | = 3967147 | 19 (0.770) | coding (180/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase | |||||
| * | ? | CP009273 | 3967097 = | 19 (0.730) | 3 (0.120) | 3/304 | NT | 10.6% | coding (130/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase |
| ? | CP009273 | 3967643 = | 33 (1.360) | coding (676/882 nt) | rffH | glucose‑1‑phosphate thymidylyltransferase | |||||
| * | ? | CP009273 | 4045512 = | 32 (1.230) | 3 (0.120) | 3/304 | NT | 9.1% | coding (108/1374 nt) | hemN | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
| ? | CP009273 | 4045709 = | 30 (1.230) | coding (305/1374 nt) | hemN | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent | |||||
| * | ? | CP009273 | = 4089156 | 20 (0.770) | 4 (0.160) | 3/312 | NT | 17.7% | coding (583/849 nt) | rhaR | transcriptional activator of rhaSR |
| ? | CP009273 | = 4089269 | 18 (0.720) | coding (696/849 nt) | rhaR | transcriptional activator of rhaSR | |||||
| * | ? | CP009273 | = 4108890 | 21 (0.810) | 4 (0.160) | 3/306 | NT | 12.3% | coding (369/486 nt) | rraA | ribonuclease E (RNase E) inhibitor protein |
| ? | CP009273 | = 4110084 | 37 (1.510) | coding (194/927 nt) | menA | 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase | |||||
| * | ? | CP009273 | = 4204585 | 20 (0.770) | 6 (0.240) | 3/310 | NT | 24.4% | coding (378/930 nt) | metA | homoserine O‑transsuccinylase |
| ? | CP009273 | = 4204621 | 18 (0.730) | coding (414/930 nt) | metA | homoserine O‑transsuccinylase | |||||
| * | ? | CP009273 | 4285630 = | 40 (1.540) | 3 (0.120) +GTGTGAAT |
3/308 | NT | 8.0% | coding (1222/1314 nt) | gltP | glutamate/aspartate:proton symporter |
| ? | CP009273 | 4285989 = | 33 (1.270) | noncoding (267/530 nt) | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | RIP321 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | CP009273 | = 4364349 | 54 (2.080) | 4 (0.160) | 4/308 | NT | 7.2% | noncoding (35/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4364383 | NA (NA) | noncoding (69/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 4383641 | 22 (0.850) | 5 (0.200) | 4/314 | NT | 18.1% | coding (244/1140 nt) | queG | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis |
| ? | CP009273 | = 4383802 | 24 (0.960) | coding (83/1140 nt) | queG | epoxyqueuosine reductase, cobalamine‑stimulated; queosine biosynthesis | |||||
| * | ? | CP009273 | = 4398990 | 27 (1.150) | 12 (0.510) | 4/294 | NT | 30.8% | noncoding (21/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4399051 | NA (NA) | noncoding (82/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 4513356 | 11 (0.420) | 4 (0.160) | 3/308 | NT | 21.4% | coding (556/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | = 4513475 | 19 (0.770) | coding (437/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | 4541997 = | 24 (0.930) | 4 (0.160) | 4/306 | NT | 12.4% | coding (545/1185 nt) | uxuA | mannonate hydrolase |
| ? | CP009273 | 4542173 = | 34 (1.390) | coding (721/1185 nt) | uxuA | mannonate hydrolase | |||||