| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 2945992 | NA (NA) | 9 (0.120) | 8/264 | 8.8 | 8.4% | noncoding (97/97 nt) | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_KO_pgi | = 4455622 | 98 (1.260) | noncoding (4/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/2945838‑2945992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC < NC_000913_3_KO_pgi/4455622‑4455475 GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTTTCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCAT < 1:936929/150‑1 ATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATACTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCCTCCG > 1:423430/1‑150 TAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCCCAATTGCCTTATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG < 1:931120/150‑1 CTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTGCTGCAATATTTTGGATTTGCATTATTTGTAGGTCGGATAAGACGTTATCGCCGCGTCCGGCCTggc > 2:41465/1‑147 TCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAAGATTTTGGATTTGCATGATTTGTAGGCAGGATAAGGCGTTCACGCCGCCTCCGGCCTgacc > 2:449538/1‑146 CCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC > 2:1132117/1‑118 CCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC < 1:1132117/118‑1 GGCCGGATAAGGCGTTCACGCCGCATAAGGTCCAGTCAAACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGCTCCCACCAAAACCGCCGTTGCTCATCACCAGAATAT > 1:727763/1‑150 GATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTC < 1:1361596/81‑1 GATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTC > 2:1361596/1‑81 ATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTC < 1:869264/77‑1 ATAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTC > 2:869264/1‑77 TAAGGCGTTCACGCCGCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCC > 1:1191268/1‑150 ACGCCTCATCCGGCCTACGCATACTATATCTGGCTAAGGCCGCATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCG < 1:275271/150‑1 TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC > 1:96964/1‑150 TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC > 1:832061/1‑150 TCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCAC < 1:1387808/150‑1 CCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTGCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACC > 1:1372028/1‑150 GCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC > 2:1350324/1‑150 GACATAGCACCTCAGAATTAAAAAGGGCGAGGTTATCCCTCACCCTAAACGCATAAATGCCTGATGCGCTACGCTTATCAGGCCTACATAACTCCTGCAATATTTTGGATTTGCATGATTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_KO_pgi/2945838‑2945992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCAGTTTCTGATGGATCCCACCAAAACCGCCGTTGCTCATCACCAGAATATGGTCGCCAGGCTGAGCGGTTTTCACCACC < NC_000913_3_KO_pgi/4455622‑4455475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |