mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 56,417 | C→T | 5.3% | P231P (CCG→CCA) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 97,310 | G→T | 6.2% | R20L (CGG→CTG) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
| RA | 221,407 | A→T | 5.2% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 5.8% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 6.0% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 9.8% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 10.2% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 239,075 | G→T | 5.7% | A239E (GCA→GAA) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 286,409 | T→A | 6.8% | Q152L (CAG→CTG) | insB1 ← | IS1 transposase B |
| RA | 293,469 | C→A | 5.2% | pseudogene (34/78 nt) | ykgT ← | pseudogene, MobA‑related |
| RA | 345,428 | T→C | 6.7% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 347,281 | G→T | 5.7% | G119V (GGC→GTC) | prpD → | 2‑methylcitrate dehydratase |
| RA | 353,317 | C→T | 5.3% | intergenic (+152/+185) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 361,680 | G→T | 5.5% | R22S (CGC→AGC) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 365,405 | C→A | 8.6% | P299Q (CCG→CAG) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 369,637 | G→T | 5.6% | R105L (CGG→CTG) | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 370,501 | G→A | 5.5% | intergenic (+164/‑414) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 393,552 | C→A | 6.3% | N75K (AAC→AAA) | yaiW → | putative lipoprotein |
| RA | 406,581 | Δ1 bp | 6.0% | intergenic (+73/+172) | mak → / ← araJ | manno(fructo)kinase/arabinose‑inducible putative transporter, MFS family |
| RA | 418,995 | T→G | 13.7% | L341R (CTG→CGG) | malZ → | maltodextrin glucosidase |
| RA | 433,686 | C→A | 5.8% | intergenic (‑95/+85) | yajO ← / ← dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 444,190 | G→T | 6.1% | Y636* (TAC→TAA) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 520,636 | G→A | 5.8% | E640E (GAG→GAA) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 529,223 | C→A | 5.4% | L253M (CTG→ATG) | allR → | transcriptional repressor of all and gcl operons; glyoxylate‑induced |
| RA | 690,087 | G→T | 5.6% | H109N (CAC→AAC) | miaB ← | tRNA‑i(6)A37 methylthiotransferase |
| RA | 697,697 | G→T | 6.6% | L171M (CTG→ATG) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 725,098 | C→T | 5.7% | V20V (GTC→GTT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,319 | G→C | 5.5% | A427A (GCG→GCC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 5.6% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 733,372 | T→C | 6.2% | pseudogene (1092/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 845,088 | C→A | 5.4% | A156S (GCC→TCC) | rhtA ← | threonine and homoserine efflux system |
| RA | 976,236 | G→T | 5.3% | A1485A (GCG→GCT) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 1,012,469 | C→T | 7.3% | Q429Q (CAG→CAA) | ycbZ ← | putative peptidase |
| RA | 1,081,867 | C→A | 6.5% | A37S (GCC→TCC) | pgaD ← | biofilm PGA synthase PgaCD, regulatory subunit; c‑di‑GMP‑stimulated activity and dimerization |
| RA | 1,264,818 | G→T | 5.3% | noncoding (40/67 nt) | rdlA → | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA |
| RA | 1,265,875 | T→C | 5.4% | noncoding (27/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,282,421 | A→G | 5.1% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,430 | C→T | 6.1% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 6.9% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,292,010 | C→A | 10.6% | S523I (AGC→ATC) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,301,639 | G→T | 6.4% | L422I (CTT→ATT) | clsA ← | cardiolipin synthase 1 |
| RA | 1,343,387 | C→A | 5.4% | L326L (CTG→CTT) | yciW ← | putative oxidoreductase |
| RA | 1,418,604 | G→T | 5.1% | W189L (TGG→TTG) | trkG → | Rac prophage; potassium transporter subunit |
| RA | 1,422,040 | A→G | 13.8% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 16.6% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,460,752 | C→T | 5.0% | pseudogene (1104/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,861 | G→A | 8.3% | pseudogene (1213/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,887 | G→C | 7.2% | pseudogene (1239/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,896 | C→T | 7.0% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,046 | C→T | 5.7% | pseudogene (1398/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,471,744 | G→T | 6.8% | intergenic (+37/‑134) | ydbD → / → ynbA | PF10971 family putative periplasmic methylglyoxal resistance protein/inner membrane protein |
| RA | 1,492,200 | G→T | 5.7% | W363L (TGG→TTG) | opgD → | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
| RA | 1,499,367 | G→T | 5.3% | A324E (GCA→GAA) | ydcO ← | BenE family inner membrane putative transporter |
| RA | 1,522,209 | C→T | 7.1% | pseudogene (51/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,527,173 | C→T | 5.6% | Y367Y (TAC→TAT) | ydcC → | H repeat‑associated putative transposase |
| RA | 1,529,167 | G→T | 5.2% | intergenic (+41/+55) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,542,239 | C→T | 5.4% | R194R (CGC→CGT) | fdnG → | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| RA | 1,629,823 | A→G | 6.2% | G94G (GGT→GGC) | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,652,056 | C→A | 5.6% | R79S (CGC→AGC) | ynfD → | DUF1161 family periplasmic protein |
| RA | 1,673,954 | C→T | 5.1% | G47G (GGC→GGT) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,681,696 | A→G | 5.7% | G313G (GGT→GGC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,729 | G→A | 7.7% | R302R (CGC→CGT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,732 | A→G | 6.6% | I301I (ATT→ATC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,735 | C→A | 7.7% | V300V (GTG→GTT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,741 | G→A | 6.2% | I298I (ATC→ATT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,715,530 | A→T | 7.3% | K4* (AAA→TAA) | ydhJ → | putative membrane fusion protein (MFP) of YdhJK efflux pump |
| RA | 1,760,360 | C→T | 5.3% | M861I (ATG→ATA) | ydiJ ← | putative FAD‑linked oxidoreductase |
| RA | 1,783,404 | C→A | 5.5% | P238Q (CCG→CAG) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,800,810 | G→T | 6.2% | G62C (GGT→TGT) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,967,228:1 | +T | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:2 | +T | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:3 | +G | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:4 | +C | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:5 | +T | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:6 | +C | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:7 | +A | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 1,967,228:8 | +C | 5.1% | coding (369/504 nt) | cheW ← | purine‑binding chemotaxis protein |
| RA | 2,012,632 | C→A | 5.1% | Q256K (CAA→AAA) | fliK → | flagellar hook‑length control protein |
| RA | 2,014,492 | C→A | 5.1% | L309I (CTC→ATC) | fliM → | flagellar motor switching and energizing component |
| RA | 2,027,199 | G→A | 5.4% | noncoding (70/91 nt) | rseX → | sRNA antisense regulator of ompA and ompC translation, Hfq‑dependent |
| RA | 2,059,656 | T→C | 5.1% | intergenic (‑21/+130) | yeeH ← / ← insH1 | pseudogene/IS5 transposase and trans‑activator |
| RA | 2,088,305 | G→A | 5.3% | G97D (GGC→GAC) | hisH → | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF |
| RA | 2,142,326 | T→C | 11.9% | L391P (CTG→CCG) | yegD → | Hsp70 chaperone family protein |
| RA | 2,170,401 | G→T | 5.1% | R95S (CGT→AGT) | gatY ← | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit |
| RA | 2,174,270 | G→T | 7.2% | E233* (GAA→TAA) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,184,239 | G→T | 5.4% | P51T (CCC→ACC) | yehB ← | putative outer membrane protein |
| RA | 2,370,515 | G→A | 7.3% | A186V (GCC→GTC) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,531,960 | C→G | 5.8% | intergenic (+118/+71) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,553,008 | A→T | 7.5% | T264T (ACA→ACT) | intZ → | CPZ‑55 prophage; putative phage integrase |
| RA | 2,564,235 | C→T | 6.8% | Q292Q (CAG→CAA) | eutE ← | aldehyde oxidoreductase, ethanolamine utilization protein |
| RA | 2,577,997 | G→T | 6.0% | G296G (GGC→GGA) | aegA ← | putative oxidoreductase, FeS binding subunit/NAD/FAD‑binding subunit |
| RA | 2,663,836 | C→A | 5.5% | R30S (CGT→AGT) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
| RA | 2,670,551 | C→A | 7.1% | R390R (CGG→CGT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 2,719,536 | G→T | 23.1% | noncoding (12/120 nt) | rrfG ← | 5S ribosomal RNA of rrnG operon |
| RA | 2,771,529 | T→C | 6.1% | V1519V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,771,561 | T→C | 5.8% | S1509G (AGT→GGT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,782,622 | T→C | 8.0% | G93G (GGT→GGC) | csiD → | carbon starvation protein |
| RA | 2,789,625 | C→A | 10.2% | A198D (GCC→GAC) | csiR → | transcriptional repressor of csiD |
| RA | 2,811,350 | A→C | 7.1% | intergenic (‑131/+68) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,356 | A→G | 7.7% | intergenic (‑137/+62) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,405 | A→G | 7.6% | intergenic (‑186/+13) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,408 | T→A | 6.6% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,833,065 | C→A | 7.3% | N61K (AAC→AAA) | ascF → | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
| RA | 2,881,708 | C→A | 5.7% | intergenic (‑37/+38) | cysH ← / ← cysI | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| RA | 2,881,714 | Δ1 bp | 7.4% | intergenic (‑43/+32) | cysH ← / ← cysI | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| RA | 2,881,723 | G→T | 8.0% | intergenic (‑52/+23) | cysH ← / ← cysI | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent/sulfite reductase, beta subunit, NAD(P)‑binding, heme‑binding |
| RA | 3,048,255 | C→G | 8.5% | A183A (GCG→GCC) | ygfB ← | UPF0149 family protein |
| RA | 3,064,718 | T→G | 16.3% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,353,283 | C→A | 6.0% | Q243K (CAG→AAG) | gltD → | glutamate synthase, 4Fe‑4S protein, small subunit |
| RA | 3,354,909 | G→T | 5.8% | K125N (AAG→AAT) | gltF → | periplasmic protein |
| RA | 3,374,414 | C→T | 5.4% | L105L (CTG→TTG) | degQ → | serine endoprotease, periplasmic |
| RA | 3,386,478 | G→T | 6.1% | P1047Q (CCG→CAG) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,416,899 | A→G | 11.7% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,422,276 | Δ1 bp | 6.2% | intergenic (‑155/‑319) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,422,282 | Δ1 bp | 5.8% | intergenic (‑161/‑313) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,422,286 | T→G | 6.5% | intergenic (‑165/‑309) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,470,094 | C→A | 6.1% | G229C (GGT→TGT) | fkpA ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,607,325 | C→A | 6.3% | P100Q (CCG→CAG) | nikA → | nickel‑binding, heme‑binding periplasmic protein |
| RA | 3,615,572 | G→A | 5.6% | R1007R (CGG→CGA) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,618,160 | A→G | 7.3% | G141G (GGA→GGG) | yhhI → | putative transposase |
| RA | 3,753,389 | C→A | 5.5% | A407A (GCG→GCT) | selA ← | selenocysteine synthase |
| RA | 3,766,819 | G→T | 7.6% | M393I (ATG→ATT) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
| RA | 3,780,173 | C→A | 5.2% | intergenic (+9/‑25) | gpmM → / → envC | phosphoglycero mutase III, cofactor‑independent/activator of AmiB,C murein hydrolases, septal ring factor |
| RA | 3,813,894 | C→A | 6.6% | D213Y (GAC→TAC) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,822,340 | A→C | 28.6% | Q12H (CAA→CAC) | xanP → | xanthine permease |
| RA | 3,901,867 | T→G | 7.7% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
| RA | 3,904,600 | G→T | 7.1% | Q96K (CAG→AAG) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
| RA | 3,935,371 | G→T | 5.6% | noncoding (204/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,971,399 | A→G | 7.0% | N172S (AAT→AGT) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| RA | 4,132,070 | C→A | 6.0% | C27F (TGT→TTT) | frwA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
| RA | 4,164,335 | C→A | 5.9% | G207V (GGG→GTG) | coaA ← | pantothenate kinase |
| RA | 4,165,449 | C→T | 12.4% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 12.4% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| JC | 4,178,733 | +CCGGCAATC | 83.3% | coding (3456/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,233,133 | G→T | 5.4% | T104T (ACC→ACA) | malG ← | maltose transporter subunit |
| RA | 4,336,238 | A→G | 9.4% | R302R (CGT→CGC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,241 | G→A | 9.7% | I301I (ATC→ATT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,244 | A→C | 8.1% | V300V (GTT→GTG) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,250 | A→G | 7.8% | I298I (ATT→ATC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,575,190 | C→T | 6.2% | pseudogene (1443/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,604,397 | G→A | 6.8% | intergenic (+320/+100) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,623,921 | G→T | 5.0% | W103L (TGG→TTG) | ytjC → | phosphatase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 80475 | 80671 | 197 | 31 [23] | [21] 34 | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | * | ÷ | CP009273 | 4249411 | 4249970 | 560 | 30 [24] | [25] 29 | zur | zur |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 353228 | NA (NA) | 8 (0.080) | 3/238 | NT | NA | noncoding (34/79 nt) | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 736444 = | NA (NA) | noncoding (35/106 nt) | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 360104 = | 93 (0.870) | 114 (1.070) | 41/250 | NT | 55.1% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 10 (0.140) | 4/164 | NT | 8.2% | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372978 = | 124 (1.600) | intergenic (+211/+13) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 370704 = | 145 (1.360) | 18 (0.200) | 6/212 | NT | 11.1% | noncoding (319/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372963 = | 167 (1.850) | noncoding (173/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 47 (0.440) | 43 (0.460) | 21/218 | NT | 50.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 42 (0.450) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 51 (0.480) | 25 (0.270) | 12/218 | NT | 36.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 42 (0.450) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 125 (1.190) | 47/246 | NT | 94.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 7 (0.070) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | = 2399639 | 7 (0.070) | 89 (0.830) | 39/250 | NT | 92.7% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||