mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 7,675 | C→A | 8.0% | M95I (ATG→ATT) | yaaJ ← | putative transporter |
| RA | 18,839 | G→T | 6.6% | R42L (CGA→CTA) | nhaR → | transcriptional activator of nhaA |
| RA | 19,702 | C→A | 8.3% | intergenic (+82/+109) | nhaR → / ← insB1 | transcriptional activator of nhaA/IS1 transposase B |
| RA | 23,573 | C→A | 8.3% | H395N (CAC→AAC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 52,948 | C→A | 6.8% | E157* (GAA→TAA) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 73,068 | G→T | 11.5% | P240Q (CCG→CAG) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 75,293 | G→T | 9.2% | intergenic (+7/+42) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 114,678 | G→A | 10.8% | T152M (ACG→ATG) | nadC ← | quinolinate phosphoribosyltransferase |
| RA | 183,678 | G→T | 6.8% | T487K (ACG→AAG) | glnD ← | uridylyltransferase |
| RA | 197,763 | C→A | 6.0% | P102P (CCC→CCA) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 199,564 | G→T | 8.2% | G173V (GGC→GTC) | lpxA → | UDP‑N‑acetylglucosamine acetyltransferase |
| RA | 221,425 | T→C | 7.1% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 7.3% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 235,845 | G→A | 6.2% | pseudogene (253/273 nt) | yafF → | pseudogene, H repeat‑associated protein |
| RA | 241,797 | G→T | 22.2% | Q166K (CAG→AAG) | yafK ← | L,D‑transpeptidase‑related protein |
| RA | 242,788 | C→A | 7.4% | G68C (GGC→TGC) | dinJ ← | antitoxin of YafQ‑DinJ toxin‑antitoxin system |
| RA | 259,857 | G→T | 5.6% | S34R (AGC→AGA) | ykfH ← | uncharacterized protein |
| RA | 263,285 | G→A | 14.0% | D144D (GAC→GAT) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 263,324 | A→G | 8.3% | G131G (GGT→GGC) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 263,333 | G→C | 12.6% | L128L (CTC→CTG) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 263,336 | C→A | 6.9% | G127G (GGG→GGT) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 273,623 | G→T | 6.2% | V297V (GTC→GTA) | afuC ← | CP4‑6 prophage; putative ferric transporter subunit |
| RA | 314,868 | G→T | 6.4% | T282N (ACC→AAC) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 331,526 | C→A | 6.5% | T179K (ACG→AAG) | yahD → | ankyrin repeat protein |
| RA | 339,480 | G→T | 10.7% | G296C (GGC→TGC) | yahK → | aldehyde reductase, NADPH‑dependent, Zn‑containing, broad specificity |
| RA | 362,046 | C→T | 6.0% | G203D (GGC→GAC) | mhpR ← | mhp operon transcriptional activator |
| RA | 370,617 | C→T | 7.6% | intergenic (+280/‑298) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 391,249 | C→A | 6.8% | W165C (TGG→TGT) | ampH ← | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| RA | 422,610 | C→A | 6.9% | R340S (CGT→AGT) | tgt → | tRNA‑guanine transglycosylase |
| RA | 429,111 | C→A | 6.9% | T67T (ACC→ACA) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 437,433 | G→T | 10.8% | L143L (CTG→CTT) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 456,176 | G→T | 8.3% | L611L (CTG→CTT) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 464,698 | C→A | 14.0% | V124V (GTC→GTA) | mdlA → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 469,378 | G→A | 5.2% | W319* (TGG→TGA) | amtB → | ammonium transporter |
| RA | 479,223 | G→A | 9.6% | Q213* (CAG→TAG) | acrB ← | multidrug efflux system protein |
| RA | 498,346 | C→A | 6.3% | G117C (GGT→TGT) | ybaL ← | inner membrane putative NAD(P)‑binding transporter |
| RA | 505,648 | G→A | 7.5% | D396D (GAC→GAT) | copA ← | copper transporter |
| RA | 510,558 | C→T | 6.9% | A224A (GCG→GCA) | qmcA ← | PHB domain membrane‑anchored putative protease |
| RA | 512,594 | Δ1 bp | 7.5% | coding (556/780 nt) | fetB → | iron exporter permease subunit, ABC transporter FetAB; peroxide resistance protein |
| RA | 512,595 | Δ1 bp | 7.5% | coding (557/780 nt) | fetB → | iron exporter permease subunit, ABC transporter FetAB; peroxide resistance protein |
| RA | 518,784 | C→A | 6.1% | S23* (TCG→TAG) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 557,647 | G→T | 6.3% | W832L (TGG→TTG) | sfmD → | putative outer membrane export usher protein |
| RA | 582,258 | G→A | 5.9% | A36V (GCC→GTC) | envY ← | porin thermoregulatory transcriptional activator |
| RA | 593,276 | C→A | 12.0% | V114V (GTC→GTA) | cusB → | copper/silver efflux system, membrane fusion protein |
| RA | 638,051 | G→T | 5.6% | D170Y (GAT→TAT) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 660,171 | G→T | 6.9% | S159* (TCA→TAA) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 691,051 | C→T | 6.4% | D165D (GAC→GAT) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| RA | 725,992 | C→A | 7.6% | P318P (CCC→CCA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,169 | T→C | 5.4% | S377S (AGT→AGC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,190 | G→A | 8.2% | K384K (AAG→AAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,513 | G→T | 5.8% | W492L (TGG→TTG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,667 | T→C | 6.6% | T543T (ACT→ACC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 9.5% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 728,467 | T→C | 5.4% | I1143I (ATT→ATC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 728,536 | G→T | 5.4% | W1166C (TGG→TGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 729,930 | A→G | 9.1% | pseudogene (342/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 730,138 | A→G | 7.3% | pseudogene (550/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 735,551 | G→A | 8.9% | D197N (GAT→AAT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 745,950 | C→A | 5.8% | G559V (GGT→GTT) | ybgQ ← | putative outer membrane protein |
| RA | 768,819 | T→A | 6.2% | S108T (TCC→ACC) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 788,996:1 | +C | 7.8% | coding (249/1473 nt) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 788,996:2 | +G | 7.8% | coding (249/1473 nt) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 788,996:3 | +A | 7.8% | coding (249/1473 nt) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 840,848 | G→T | 5.3% | T30K (ACG→AAG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 908,132 | Δ1 bp | 7.8% | coding (1139/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,133 | Δ1 bp | 7.8% | coding (1138/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,134 | Δ1 bp | 7.8% | coding (1137/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,135 | Δ1 bp | 7.5% | coding (1136/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,136 | Δ1 bp | 7.5% | coding (1135/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,137 | Δ1 bp | 7.5% | coding (1134/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,138 | Δ1 bp | 7.5% | coding (1133/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,139 | Δ1 bp | 7.5% | coding (1132/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 908,140 | Δ1 bp | 7.5% | coding (1131/1653 nt) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 910,499 | C→T | 7.3% | intergenic (‑186/+309) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 919,348 | C→A | 7.8% | P210Q (CCG→CAG) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 919,905 | G→T | 5.5% | D396Y (GAT→TAT) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 923,065 | G→T | 8.6% | V529V (GTC→GTA) | cydC ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 940,395 | G→T | 9.8% | Q207K (CAG→AAG) | ycaC ← | putative isochorismatase family hydrolase |
| RA | 990,493 | C→A | 10.9% | E318* (GAA→TAA) | ssuD ← | alkanesulfonate monooxygenase, FMNH(2)‑dependent |
| RA | 1,000,299 | T→C | 9.5% | L26L (TTA→CTA) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,045,283 | T→G | 8.2% | intergenic (‑83/‑6) | gfcA ← / → insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
| RA | 1,069,762 | C→T | 5.5% | A22V (GCG→GTG) | rutR → | rut operon transcriptional repressor for |
| RA | 1,071,713 | G→T | 9.5% | R876S (CGC→AGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,191,425 | G→T | 8.3% | D283Y (GAT→TAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
| RA | 1,198,894 | G→T | 10.0% | P57P (CCG→CCT) | ymfL → | e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,203,113 | G→T | 6.2% | A53S (GCA→TCA) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,218,996 | G→A | 8.6% | intergenic (+91/‑24) | ymgJ → / → ycgI | uncharacterized protein/pseudogene |
| RA | 1,264,818 | G→T | 5.5% | noncoding (40/67 nt) | rdlA → | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA |
| RA | 1,265,182 | C→T | 7.0% | G29S (GGC→AGC) | ldrB ← | toxic polypeptide, small |
| RA | 1,266,575 | G→T | 8.0% | S244* (TCG→TAG) | chaA ← | calcium/sodium:proton antiporter |
| RA | 1,274,639 | C→A | 8.3% | F409L (TTC→TTA) | narK → | nitrate/nitrite transporter |
| RA | 1,276,027 | T→C | 6.4% | T236T (ACT→ACC) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,282,163 | C→A | 6.3% | intergenic (+181/+359) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,249 | A→G | 13.4% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,421 | A→G | 7.9% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,608 | T→C | 5.9% | noncoding (85/171 nt) T9A (ACT→GCT) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,294,341 | C→T | 5.9% | S96S (AGC→AGT) | ychE → | UPF0056 family inner membrane protein |
| RA | 1,337,028 | G→T | 7.2% | Q38H (CAG→CAT) | yciH → | initiation factor function partial mimic, SUI1 family |
| RA | 1,364,188 | C→T | 9.1% | S81S (AGC→AGT) | pspE → | thiosulfate:cyanide sulfurtransferase (rhodanese) |
| RA | 1,395,455 | C→T | 6.2% | S192S (TCG→TCA) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,399,985 | C→T | 7.5% | noncoding (24/96 nt) | mcaS ← | motility and biofilm regulator sRNA |
| RA | 1,422,060 | G→C | 13.2% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,252 | A→G | 8.4% | pseudogene (732/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 5.9% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,460,602 | T→C | 8.9% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,461,113 | A→G | 5.0% | pseudogene (1465/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,479,676 | G→T | 8.7% | D787Y (GAT→TAT) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,516,296 | G→A | 6.0% | R343C (CGT→TGT) | yncD ← | putative iron outer membrane transporter |
| RA | 1,599,259 | A→G | 7.8% | E319G (GAG→GGG) | lsrD → | autoinducer 2 import system permease protein |
| RA | 1,626,911 | T→C | 5.5% | intergenic (‑369/‑418) | ydfJ ← / → ydfK | pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein/cold shock protein, function unknown, Qin prophage |
| RA | 1,652,338 | G→T | 10.2% | E5* (GAA→TAA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,681,696 | A→G | 13.9% | G313G (GGT→GGC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,703,101 | C→G | 7.0% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,745,991 | A→G | 6.0% | P699P (CCT→CCC) | ydhV ← | putative oxidoreductase subunit |
| RA | 1,749,213 | G→T | 13.9% | T62T (ACC→ACA) | ydhZ ← | uncharacterized protein |
| RA | 1,754,361 | C→T | 9.5% | E140E (GAG→GAA) | sufS ← | cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP‑dependent |
| RA | 1,759,841 | C→A | 6.7% | E17* (GAA→TAA) | menI ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,793,720 | G→T | 5.1% | A96D (GCT→GAT) | rplT ← | 50S ribosomal subunit protein L20 |
| RA | 1,805,250 | T→C | 7.2% | A20A (GCT→GCC) | ydjN → | putative transporter |
| RA | 1,813,772 | G→T | 8.9% | S97S (TCC→TCA) | chbA ← | N,N'‑diacetylchitobiose‑specific enzyme IIA component of PTS |
| RA | 1,874,940 | G→T | 7.1% | P26Q (CCA→CAA) | leuE ← | leucine efflux protein |
| RA | 1,876,540 | T→C | 6.0% | P124P (CCT→CCC) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| RA | 1,886,286 | C→A | 7.7% | D403Y (GAC→TAC) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,912,442 | G→A | 10.0% | G226S (GGC→AGC) | yebT → | MCE domain protein |
| RA | 1,917,040 | G→A | 16.0% | R63C (CGT→TGT) | pphA ← | serine/threonine‑specific protein phosphatase 1 |
| RA | 1,965,072 | C→A | 11.5% | R57L (CGG→CTG) | tap ← | methyl‑accepting protein IV |
| RA | 1,987,217 | C→A | 11.6% | S324I (AGC→ATC) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 2,002,678 | C→T | 5.3% | G307G (GGC→GGT) | yedE → | UPF0394 family sulfur transport domain‑containing inner membrane protein |
| RA | 2,032,505 | C→A | 8.6% | A23A (GCC→GCA) | hiuH → | hydroxyisourate hydrolase |
| RA | 2,040,512 | T→C | 12.1% | Y698Y (TAT→TAC) | yeeJ → | putative adhesin |
| RA | 2,070,102 | C→T | 6.3% | T105I (ACA→ATA) | yeeS → | CP4‑44 prophage; putative DNA repair protein |
| RA | 2,072,388 | G→T | 13.3% | pseudogene (162/186 nt) | yoeF → | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| RA | 2,084,978 | G→A | 5.9% | G134D (GGC→GAC) | hisD → | bifunctional histidinal dehydrogenase/ histidinol dehydrogenase |
| RA | 2,101,241 | C→T | 7.0% | P190P (CCG→CCA) | glf ← | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
| RA | 2,108,810 | G→T | 13.4% | Q190K (CAA→AAA) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,134,148 | G→T | 10.8% | Q316K (CAA→AAA) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,134,628 | C→T | 12.1% | V156M (GTG→ATG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,141,783 | G→T | 7.7% | R210L (CGG→CTG) | yegD → | Hsp70 chaperone family protein |
| RA | 2,150,699 | G→T | 12.5% | P652P (CCG→CCT) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,156,618 | G→T | 7.8% | D88Y (GAT→TAT) | baeS → | sensory histidine kinase in two‑component regulatory system with BaeR |
| RA | 2,172,672 | C→A | 13.1% | R125S (CGT→AGT) | yegT → | nucleoside transporter, low affinity |
| RA | 2,177,322 | C→A | 6.7% | R225L (CGC→CTC) | thiD ← | bifunctional hydroxy‑methylpyrimidine kinase/ hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,193,595 | C→T | 5.1% | pseudogene (795/948 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,211,227 | C→T | 10.2% | L270L (CTG→CTA) | yehY ← | inner membrane putative ABC superfamily transporter permease |
| RA | 2,259,339 | C→A | 6.5% | I137I (ATC→ATA) | yeiP → | elongation factor P‑like protein |
| RA | 2,262,159 | G→T | 9.3% | Q284H (CAG→CAT) | yeiR → | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein |
| RA | 2,267,115 | G→A | 10.5% | A425T (GCC→ACC) | yejA → | microcin C transporter YejABEF, periplasmic binding protein; ABC family |
| RA | 2,286,673 | C→T | 16.3% | G571R (GGG→AGG) | ccmF ← | heme lyase, CcmF subunit |
| RA | 2,293,669 | C→A | 6.1% | G24V (GGG→GTG) | napG ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
| RA | 2,306,106 | C→T | 7.5% | L41L (CTG→CTA) | ompC ← | outer membrane porin protein C |
| RA | 2,309,584 | C→T | 9.5% | P873L (CCA→CTA) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,364,782 | C→A | 8.9% | A132A (GCC→GCA) | arnT → | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| RA | 2,377,742 | C→A | 6.5% | R487L (CGC→CTC) | yfbK ← | Von Willebrand factor domain putative lipoprotein |
| RA | 2,401,472 | C→A | 5.8% | H145N (CAT→AAT) | alaA → | valine‑pyruvate aminotransferase 2 |
| RA | 2,511,819 | G→T | 13.4% | intergenic (‑109/‑127) | alaW ← / → yfeC | tRNA‑Ala/DUF1323 family putative DNA‑binding protein |
| RA | 2,517,181 | G→A | 5.4% | P55L (CCT→CTT) | xapB ← | xanthosine transporter |
| RA | 2,537,076 | Δ1 bp | 9.6% | intergenic (‑189/+115) | cysP ← / ← ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| RA | 2,573,244 | G→T | 6.2% | E84* (GAA→TAA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,604,660 | C→T | 7.1% | A199V (GCG→GTG) | hyfI → | hydrogenase 4, Fe‑S subunit |
| RA | 2,651,876 | C→A | 6.2% | R140L (CGG→CTG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,668,328 | C→T | 8.3% | A265T (GCT→ACT) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 2,674,853 | T→A | 9.5% | R418W (AGG→TGG) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,694,758 | C→A | 8.2% | G111W (GGG→TGG) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
| RA | 2,706,831 | G→T | 6.8% | G193C (GGC→TGC) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,707,703 | C→T | 6.2% | intergenic (+114/+95) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,716,743 | C→T | 7.7% | Q220* (CAG→TAG) | pssA → | phosphatidylserine synthase (CDP‑diacylglycerol‑serine O‑phosphatidyltransferase) |
| RA | 2,742,362 | C→A | 5.1% | A77D (GCC→GAC) | yfjD → | UPF0053 family inner membrane protein |
| RA | 2,744,774 | C→A | 8.7% | G195G (GGC→GGA) | nadK → | NAD kinase |
| RA | 2,755,636 | G→T | 7.3% | H422N (CAT→AAT) | yfjK ← | DEAD/H helicase‑like protein, CP4‑57 putative defective prophage |
| RA | 2,761,401 | A→G | 5.7% | Q111Q (CAA→CAG) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,762,683 | C→G | 10.7% | T220T (ACC→ACG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,686 | T→C | 9.5% | Y221Y (TAT→TAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,692 | G→T | 12.1% | R223R (CGG→CGT) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,698 | A→G | 7.3% | Q225Q (CAA→CAG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,701 | A→G | 7.4% | E226E (GAA→GAG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,769,263 | C→G | 5.1% | intergenic (+88/‑15) | ypjI → / → yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| RA | 2,773,745 | C→A | 5.7% | G781C (GGC→TGC) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,811,690 | G→T | 5.8% | intergenic (‑57/+142) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,821,058 | G→T | 9.9% | G113V (GGA→GTA) | srlB → | glucitol/sorbitol‑specific enzyme IIA component of PTS |
| RA | 2,840,412 | G→T | 6.1% | S120R (AGC→AGA) | hycD ← | hydrogenase 3, membrane subunit |
| RA | 2,881,535 | C→A | 6.5% | G46V (GGT→GTT) | cysH ← | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| RA | 2,890,377 | C→A | 5.4% | A285S (GCC→TCC) | ygcS ← | putative transporter |
| RA | 2,926,845 | T→A | 9.8% | K68M (AAG→ATG) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,929,140 | T→G | 8.3% | A66A (GCT→GCG) | fucI → | L‑fucose isomerase |
| RA | 2,952,390 | G→T | 6.9% | intergenic (‑147/+29) | ptrA ← / ← recC | protease III/exonuclease V (RecBCD complex), gamma chain |
| RA | 2,955,579 | C→A | 7.3% | W70L (TGG→TTG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,956,163 | C→A | 6.8% | R118L (CGC→CTC) | ygdB ← | DUF2509 family protein |
| RA | 3,032,611 | C→A | 8.1% | Q164H (CAG→CAT) | xerD ← | site‑specific tyrosine recombinase |
| RA | 3,033,025 | C→A | 5.3% | L26F (TTG→TTT) | xerD ← | site‑specific tyrosine recombinase |
| RA | 3,044,764 | C→A | 6.2% | G305C (GGC→TGC) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,050,481 | G→T | 10.2% | intergenic (+134/+56) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,058,267:1 | +G | 10.0% | coding (107/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,270 | T→A | 10.0% | L37Q (CTA→CAA) ‡ | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,271 | A→G | 9.5% | L37L (CTA→CTG) ‡ | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,273 | C→G | 9.5% | P38R (CCC→CGC) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:1 | +A | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:2 | +C | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:3 | +G | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:4 | +G | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:5 | +C | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:6 | +T | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:7 | +G | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:8 | +G | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:9 | +A | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,058,277:10 | +A | 9.3% | coding (117/1479 nt) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,064,718 | T→G | 12.7% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,075,020 | G→T | 8.9% | intergenic (‑26/‑252) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
| RA | 3,092,667 | C→A | 8.0% | L86L (CTG→CTT) | yggM ← | DUF1202 family putative secreted protein |
| RA | 3,109,788 | G→T | 12.0% | P895Q (CCA→CAA) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,118,543 | G→A | 8.0% | H92H (CAC→CAT) | glcF ← | glycolate oxidase 4Fe‑4S iron‑sulfur cluster subunit |
| RA | 3,167,253 | C→A | 5.1% | L501L (CTG→CTT) | parE ← | DNA topoisomerase IV, subunit B |
| RA | 3,276,293 | C→T | 7.9% | A320V (GCT→GTT) | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,280,250 | G→T | 12.9% | E208* (GAA→TAA) | agaI → | galactosamine‑6‑phosphate isomerase |
| RA | 3,335,515 | G→A | 6.6% | M297I (ATG→ATA) | kdsD → | D‑arabinose 5‑phosphate isomerase |
| RA | 3,343,116 | C→A | 7.3% | R18L (CGG→CTG) | mtgA ← | biosynthetic peptidoglycan transglycosylase |
| RA | 3,366,851 | G→T | 5.4% | R29S (CGC→AGC) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,416,890 | T→G | 8.6% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 10.6% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,443,328 | C→A | 9.4% | A89S (GCA→TCA) | rplV ← | 50S ribosomal subunit protein L22 |
| RA | 3,447,692 | C→A | 7.0% | V356F (GTC→TTC) | gspA ← | general secretory pathway component, cryptic |
| RA | 3,452,360 | G→T | 12.9% | L221F (TTG→TTT) | gspE → | general secretory pathway component, cryptic |
| RA | 3,453,002 | G→T | 7.2% | V435V (GTG→GTT) | gspE → | general secretory pathway component, cryptic |
| RA | 3,472,095 | C→A | 8.4% | Q19H (CAG→CAT) | yheV ← | DUF2387 family putative metal‑binding protein |
| RA | 3,514,916 | G→T | 11.4% | T139K (ACG→AAG) | hofN ← | DNA catabolic putative fimbrial assembly protein |
| RA | 3,522,094 | G→T | 16.4% | D23Y (GAC→TAC) | yrfG → | GMP/IMP nucleotidase |
| RA | 3,546,887 | T→G | 9.2% | H148Q (CAT→CAG) | malT → | mal regulon transcriptional activator |
| RA | 3,563,413 | C→T | 9.5% | D423N (GAT→AAT) | glgX ← | glycogen debranching enzyme |
| RA | 3,563,737 | Δ1 bp | 6.0% | coding (943/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,563,738 | Δ1 bp | 6.1% | coding (942/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,563,739 | Δ1 bp | 6.1% | coding (941/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,616,061 | T→C | 5.2% | Y1170Y (TAT→TAC) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,617,792 | A→G | 7.1% | T19A (ACC→GCC) | yhhI → | putative transposase |
| RA | 3,621,656 | G→A | 8.2% | R415W (CGG→TGG) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,623,359 | C→A | 5.3% | E202* (GAA→TAA) | yhiI ← | putative membrane fusion protein (MFP) of efflux pump |
| RA | 3,630,062 | C→A | 6.5% | G237* (GGA→TGA) | yhiN ← | putative oxidoreductase |
| RA | 3,635,229 | G→T | 5.0% | L336L (CTG→CTT) | dtpB → | dipeptide and tripeptide permease B |
| RA | 3,637,377 | G→T | 13.7% | P389Q (CCG→CAG) | prlC ← | oligopeptidase A |
| RA | 3,637,604 | C→A | 14.7% | L313L (CTG→CTT) | prlC ← | oligopeptidase A |
| RA | 3,660,797 | A→G | 7.8% | D48D (GAT→GAC) | gadA ← | glutamate decarboxylase A, PLP‑dependent |
| RA | 3,689,381 | C→A | 6.9% | L55L (CTG→CTT) | yhjR ← | DUF2629 family protein |
| RA | 3,692,266 | T→C | 6.0% | D231D (GAT→GAC) | bcsG → | DUF3260 family inner membrane protein associated with cellulose production |
| RA | 3,697,602 | G→T | 9.1% | P174T (CCG→ACG) | dppC ← | dipeptide/heme transporter |
| RA | 3,716,679 | G→T | 6.2% | T360K (ACG→AAG) | glyS ← | glycine tRNA synthetase, beta subunit |
| RA | 3,751,950 | G→T | 7.0% | L424L (CTC→CTA) | selB ← | selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,766,302 | C→T | 10.5% | P221L (CCA→CTA) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
| RA | 3,782,848 | G→T | 5.5% | F198L (TTC→TTA) | waaH ← | LPS(HepIII)‑glucuronic acid glycosyltransferase |
| RA | 3,802,712 | G→T | 5.4% | P271P (CCG→CCT) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,836,309 | C→A | 7.1% | G281C (GGC→TGC) | yicO ← | putative adenine permease |
| RA | 3,844,897 | C→A | 5.7% | L416L (CTG→CTT) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,862,665 | G→A | 6.1% | A2V (GCG→GTG) | yidR ← | DUF3748 family protein |
| RA | 3,869,765 | C→T | 6.2% | S183N (AGT→AAT) | yidA ← | sugar phosphate phosphatase; substrates include erythrose 4‑P and mannose 1‑P phosphatase |
| RA | 3,904,197 | G→A | 7.0% | A230V (GCG→GTG) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
| RA | 3,935,371 | G→T | 9.7% | noncoding (204/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,937,442 | G→T | 5.7% | noncoding (379/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,977,282 | C→A | 8.2% | P322Q (CCG→CAG) | aslB → | putative AslA‑specific sulfatase‑maturating enzyme |
| RA | 3,983,376 | C→A | 6.6% | E251* (GAG→TAG) | hemC ← | hydroxymethylbilane synthase |
| RA | 4,005,046 | G→T | 6.1% | W204L (TGG→TTG) | yigM → | putative inner membrane EamA‑like transporter |
| RA | 4,051,370 | T→G | 8.1% | M9L (ATG→CTG) | glnA ← | glutamine synthetase |
| RA | 4,098,283 | G→T | 6.7% | M268I (ATG→ATT) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,098,583 | G→A | 13.6% | intergenic (+141/‑179) | pfkA → / → sbp | 6‑phosphofructokinase I/sulfate transporter subunit |
| RA | 4,098,599 | Δ1 bp | 10.9% | intergenic (+157/‑163) | pfkA → / → sbp | 6‑phosphofructokinase I/sulfate transporter subunit |
| RA | 4,099,484 | C→A | 21.6% | T241T (ACC→ACA) | sbp → | sulfate transporter subunit |
| RA | 4,120,021 | A→G | 7.9% | S87G (AGC→GGC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,120,084 | C→A | 6.3% | R108S (CGC→AGC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,135,984 | C→T | 6.5% | L688L (CTG→TTG) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,164,754 | G→T | 6.6% | S67R (AGC→AGA) | coaA ← | pantothenate kinase |
| RA | 4,165,449 | C→T | 25.7% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 25.6% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,166,006 | C→T | 6.2% | R45R (CGC→CGT) | tufB → | translation elongation factor EF‑Tu 2 |
| RA | 4,176,460 | A→G | 8.6% | K395E (AAA→GAA) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,500 | C→T | 61.7% | R1075C (CGT→TGT) ‡ | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,501 | G→T | 30.9% | R1075L (CGT→CTT) ‡ | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,188,787 | G→T | 6.4% | D24Y (GAT→TAT) | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,208,252 | G→T | 5.1% | G406C (GGT→TGT) | aceA → | isocitrate lyase |
| RA | 4,271,272 | G→T | 8.0% | E455D (GAG→GAT) | yjcE → | putative cation/proton antiporter |
| RA | 4,283,506 | A→G | 6.9% | T12T (ACA→ACG) | nrfG → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG |
| RA | 4,287,172 | G→T | 8.4% | P671Q (CCG→CAG) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,296,881 | C→A | 11.1% | G246C (GGT→TGT) | alsK ← | D‑allose kinase |
| RA | 4,306,837 | G→T | 14.7% | P67T (CCG→ACG) | phnM ← | ribophosphonate triphosphate hydrolase |
| RA | 4,313,212 | G→T | 6.4% | L320M (CTG→ATG) | phnD ← | phosphonate ABC transporter periplasmic binding protein |
| RA | 4,340,756 | C→T | 7.8% | G242S (GGC→AGC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| RA | 4,369,894 | G→T | 6.3% | S147S (TCC→TCA) | frdB ← | fumarate reductase (anaerobic), Fe‑S subunit |
| RA | 4,376,949 | G→T | 9.0% | R747S (CGT→AGT) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,381,059 | C→A | 8.9% | G90C (GGC→TGC) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,384,645 | G→T | 7.5% | G255W (GGG→TGG) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,398,586 | G→A | 5.1% | V706M (GTG→ATG) | rnr → | exoribonuclease R, RNase R |
| RA | 4,407,614 | G→A | 5.8% | S219S (AGC→AGT) | ulaR ← | transcriptional repressor for the L‑ascorbate utilization (ula) divergent operon |
| RA | 4,407,629 | C→A | 5.9% | A214A (GCG→GCT) | ulaR ← | transcriptional repressor for the L‑ascorbate utilization (ula) divergent operon |
| RA | 4,417,101 | C→A | 12.2% | D47Y (GAT→TAT) | yjfZ ← | uncharacterized protein |
| RA | 4,425,105 | T→C | 5.7% | K426K (AAA→AAG) | cpdB ← | 2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,467,913 | A→C | 8.1% | A72A (GCT→GCG) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,467,916 | A→G | 8.8% | G71G (GGT→GGC) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,467,926 | T→A | 10.2% | Y68F (TAT→TTT) | argI ← | ornithine carbamoyltransferase 1 |
| RA | 4,492,706 | G→T | 6.5% | A181A (GCC→GCA) | insG ← | IS4 transposase |
| RA | 4,508,885 | T→A | 5.4% | pseudogene (348/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,520,242 | G→T | 5.4% | Q37K (CAA→AAA) | sgcB ← | putative enzyme IIB component of PTS |
| RA | 4,522,243 | G→T | 7.4% | intergenic (‑116/+11) | yjhY ← / ← yjhP | pseudogene, zinc finger protein family/putative methyltransferase |
| RA | 4,575,139 | C→A | 9.7% | pseudogene (1494/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,665 | A→G | 7.1% | pseudogene (968/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,604,709 | G→T | 11.9% | Q218K (CAG→AAG) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| RA | 4,623,132 | G→A | 8.2% | T144I (ACC→ATC) | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 578863 | 579101 | 239 | 10 [8] | [7] 9 | tfaX/appY | pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage |
| * | * | ÷ | CP009273 | 1524289 | 1524468 | 180 | 9 [8] | [8] 10 | ydcD | uncharacterized protein |
| * | * | ÷ | CP009273 | 3448766 | 3448865 | 100 | 9 [8] | [4] 18 | gspA/gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| * | * | ÷ | CP009273 | 3792502 | 3792785 | 284 | 12 [8] | [3] 9 | [waaU]–[waaZ] | [waaU],[waaZ] |
| * | * | ÷ | CP009273 | 3797648 | 3797871 | 224 | 9 [4] | [8] 10 | waaS | lipopolysaccharide core biosynthesis protein |
| * | * | ÷ | CP009273 | 4249415 | 4249935 | 521 | 9 [7] | [7] 10 | zur | zur |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 40 (0.790) | 27 (0.530) | 16/250 | NT | 40.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1203246 = | 31 (0.610) | 14 (0.320) | 10/218 | NT | 33.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 29 (0.660) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 35 (0.690) | 27 (0.610) | 12/218 | NT | 47.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 29 (0.660) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2008478 = | 59 (1.170) | 4 (0.080) | 3/246 | NT | 5.6% | coding (118/996 nt) | fliG | flagellar motor switching and energizing component |
| ? | CP009273 | = 2008634 | 76 (1.530) | coding (274/996 nt) | fliG | flagellar motor switching and energizing component | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 47 (0.940) | 26/246 | NT | 90.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 5 (0.100) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | = 2399639 | 5 (0.100) | 51 (1.010) | 27/250 | NT | 91.1% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||
| * | ? | CP009273 | 3809368 = | 72 (1.420) | 7 (0.140) | 3/248 | NT | 8.5% | pseudogene (542/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | CP009273 | = 3809638 | 80 (1.590) | pseudogene (272/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||