mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 7,429 | G→T | 6.0% | P177P (CCC→CCA) | yaaJ ← | putative transporter |
| RA | 11,196 | C→A | 10.6% | G54V (GGG→GTG) | yaaW ← | UPF0174 family protein |
| RA | 35,095 | G→T | 6.6% | R93S (CGC→AGC) | caiE ← | stimulator of CaiD and CaiB enzyme activities |
| RA | 46,184 | C→A | 6.5% | I126I (ATC→ATA) | yaaU → | putative transporter |
| RA | 92,012 | C→A | 7.9% | L292L (CTC→CTA) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 110,358 | C→A | 10.4% | A143E (GCG→GAG) | guaC → | GMP reductase |
| RA | 154,273 | C→T | 6.3% | P447P (CCG→CCA) | pcnB ← | poly(A) polymerase |
| RA | 155,718 | G→T | 6.8% | P294P (CCC→CCA) | gluQ ← | glutamyl‑Q tRNA(Asp) synthetase |
| RA | 163,514 | G→T | 5.1% | M766I (ATG→ATT) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 166,083 | G→A | 10.0% | A705T (GCT→ACT) | fhuA → | ferrichrome outer membrane transporter |
| RA | 175,172 | C→A | 6.6% | G157C (GGT→TGT) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 221,373:1 | +G | 9.3% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 9.8% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,390 | Δ1 bp | 9.9% | noncoding (1133/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,391 | G→A | 9.9% | noncoding (1134/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,393 | C→T | 10.2% | noncoding (1136/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,395 | G→A | 10.1% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,397 | C→T | 10.0% | noncoding (1140/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,398 | C→T | 10.0% | noncoding (1141/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 10.1% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 10.6% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 10.7% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 11.1% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 17.0% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 17.2% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 23.5% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,464 | G→C | 19.0% | noncoding (1207/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,471 | C→T | 21.1% | noncoding (1214/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,476 | A→T | 23.5% | noncoding (1219/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 256,630 | G→T | 5.9% | D178Y (GAC→TAC) | proB → | gamma‑glutamate kinase |
| RA | 262,526 | C→T | 6.0% | pseudogene (153/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 262,529 | C→T | 6.1% | pseudogene (150/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 262,683 | C→G | 5.4% | intergenic (‑5/+212) | ykfK ← / ← yafZ | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 262,684 | G→A | 5.3% | intergenic (‑6/+211) | ykfK ← / ← yafZ | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 262,691 | G→A | 6.2% | intergenic (‑13/+204) | ykfK ← / ← yafZ | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 262,692 | T→G | 6.1% | intergenic (‑14/+203) | ykfK ← / ← yafZ | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 264,376 | G→A | 5.5% | A99V (GCT→GTT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 274,938 | T→A | 8.4% | Q152L (CAG→CTG) | insB1 ← | IS1 transposase B |
| RA | 291,686 | A→G | 8.2% | I374I (ATT→ATC) | intF ← | CP4‑6 prophage; putative phage integrase |
| RA | 314,740 | G→A | 5.8% | R325W (CGG→TGG) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,153 | G→T | 8.9% | G35G (GGG→GGT) | ykgF → | ferridoxin‑like LutB family protein; putative electron transport chain YkgEFG component |
| RA | 328,782 | C→A | 10.3% | T234K (ACG→AAG) | yahA → | c‑di‑GMP‑specific phosphodiesterase |
| RA | 345,428 | T→C | 12.2% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 363,721 | C→T | 5.9% | A293V (GCG→GTG) | mhpA → | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 378,487 | G→T | 11.7% | P302Q (CCG→CAG) | yaiP ← | putative family 2 glycosyltransferase |
| RA | 406,905 | C→A | 7.5% | G345C (GGT→TGT) | araJ ← | arabinose‑inducible putative transporter, MFS family |
| RA | 409,292 | C→A | 6.1% | E640* (GAA→TAA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 418,751 | G→T | 7.5% | D260Y (GAC→TAC) | malZ → | maltodextrin glucosidase |
| RA | 419,830 | G→A | 6.8% | P182L (CCG→CTG) | acpH ← | acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase |
| RA | 441,908 | G→T | 9.6% | S72Y (TCC→TAC) | yajR ← | putative transporter |
| RA | 453,420 | T→C | 7.5% | I180T (ATT→ACT) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 484,979 | G→T | 11.7% | L996F (TTG→TTT) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 502,930 | C→A | 6.3% | A203S (GCA→TCA) | ybaP ← | TraB family protein |
| RA | 519,919 | G→A | 6.7% | E401E (GAG→GAA) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 522,248 | A→C | 7.7% | S1178R (AGC→CGC) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 541,563 | C→A | 8.9% | G86V (GGA→GTA) | allD ← | ureidoglycolate dehydrogenase |
| RA | 561,384 | C→A | 6.8% | P17P (CCG→CCT) pseudogene (152/222 nt) |
intD ← xisD ← |
DLP12 prophage; putative phage integrase pseudogene, exisionase in defective prophage DLP12;Phage or Prophage Related |
| RA | 603,459 | G→T | 10.8% | intergenic (+15/‑62) | hokE → / → insL1 | toxic polypeptide, small/IS186 transposase |
| RA | 603,460 | T→A | 7.7% | intergenic (+16/‑61) | hokE → / → insL1 | toxic polypeptide, small/IS186 transposase |
| RA | 603,462 | A→T | 6.4% | intergenic (+18/‑59) | hokE → / → insL1 | toxic polypeptide, small/IS186 transposase |
| RA | 615,146 | G→T | 6.8% | P170P (CCC→CCA) | fepC ← | iron‑enterobactin transporter subunit |
| RA | 625,648 | G→A | 9.5% | G100D (GGT→GAT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,650:1 | +A | 9.3% | coding (301/2106 nt) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,650:2 | +A | 9.3% | coding (301/2106 nt) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,652 | G→T | 9.3% | P101P (CCG→CCT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,654:1 | +C | 10.8% | coding (305/2106 nt) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,656 | G→C | 10.8% | V103L (GTG→CTG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,657 | T→C | 10.8% | V103A (GTG→GCG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,659 | G→T | 11.2% | G104W (GGG→TGG) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,662 | C→A | 10.6% | P105T (CCG→ACG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,663 | C→T | 11.3% | P105L (CCG→CTG) ‡ | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 625,666 | T→G | 9.8% | V106G (GTA→GGA) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 640,282 | C→A | 9.1% | D60Y (GAT→TAT) | rna ← | ribonuclease I |
| RA | 661,951 | T→A | 5.2% | T575S (ACC→TCC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 679,468 | A→G | 7.5% | L134P (CTC→CCC) | rihA ← | ribonucleoside hydrolase 1 |
| RA | 694,866 | G→A | 7.4% | intergenic (‑233/+164) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 694,871 | A→C | 16.7% | intergenic (‑238/+159) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 700,566 | G→T | 6.6% | L389L (CTG→CTT) | nagE → | fused N‑acetyl glucosamine specific PTS enzyme: IIC, IIB, and IIA components |
| RA | 711,705 | C→A | 8.0% | pseudogene (349/651 nt) | ybfG ← | pseudogene |
| RA | 713,401 | C→A | 7.7% | A107A (GCG→GCT) | potE ← | putrescine/proton symporter: putrescine/ornithine antiporter |
| RA | 716,701 | C→A | 8.3% | L163L (CTG→CTT) | kdpE ← | response regulator in two‑component regulatory system with KdpD |
| RA | 726,319 | G→C | 6.3% | A427A (GCG→GCC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 7.4% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 733,384 | C→G | 9.1% | pseudogene (1104/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 746,059 | C→A | 6.4% | G523C (GGT→TGT) | ybgQ ← | putative outer membrane protein |
| RA | 789,497 | G→T | 7.8% | Q202K (CAA→AAA) | modE ← | transcriptional repressor for the molybdenum transport operon modABC |
| RA | 806,474 | G→T | 9.5% | G213V (GGG→GTG) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 818,333 | G→T | 7.2% | P288Q (CCG→CAG) | clsB ← | cardiolipin synthase 2 |
| RA | 824,502 | G→T | 5.8% | T309T (ACC→ACA) | ybhG ← | putative membrane fusion protein (MFP) component of efflux pump, membrane anchor |
| RA | 835,110 | G→T | 9.4% | P626P (CCC→CCA) | fiu ← | catecholate siderophore receptor Fiu |
| RA | 838,535 | T→A | 6.6% | F250I (TTT→ATT) | rlmF → | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| RA | 840,709 | G→T | 8.8% | P76P (CCC→CCA) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 896,076 | G→T | 7.7% | intergenic (‑45/+246) | artJ ← / ← artM | arginine binding protein, periplasmic/arginine transporter subunit |
| RA | 903,673 | G→T | 15.4% | L22L (CTC→CTA) | ybjT ← | putative NAD‑dependent oxidoreductase |
| RA | 904,751 | G→T | 6.3% | intergenic (‑1/+36) | ltaE ← / ← poxB | L‑allo‑threonine aldolase, PLP‑dependent/pyruvate dehydrogenase (pyruvate oxidase), thiamine triphosphate‑binding, FAD‑binding |
| RA | 905,041 | G→T | 9.3% | R489S (CGC→AGC) | poxB ← | pyruvate dehydrogenase (pyruvate oxidase), thiamine triphosphate‑binding, FAD‑binding |
| RA | 913,167 | G→T | 6.6% | E413D (GAG→GAT) | ybjD → | putative OLD family ATP‑dependent endonuclease; DUF2813 family protein |
| RA | 931,040 | A→G | 10.8% | P787P (CCA→CCG) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 931,045 | A→C | 12.1% | Q789P (CAG→CCG) ‡ | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 931,046 | G→A | 12.1% | Q789Q (CAG→CAA) ‡ | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 937,215 | G→T | 6.7% | M267I (ATG→ATT) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 942,562 | C→A | 7.6% | intergenic (+87/‑123) | ycaD → / → ycaM | putative MFS‑type transporter/putative transporter |
| RA | 955,888 | T→A | 15.4% | C57S (TGT→AGT) ‡ | ycaL → | putative peptidase‑related chaperone |
| RA | 955,890 | T→C | 15.4% | C57C (TGT→TGC) ‡ | ycaL → | putative peptidase‑related chaperone |
| RA | 966,575 | G→A | 9.7% | D90N (GAC→AAC) | kdsB → | 3‑deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | 969,233 | C→A | 7.3% | R81S (CGC→AGC) | smtA → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 1,008,116 | G→A | 12.7% | G220G (GGG→GGA) | pqiA → | paraquat‑inducible, SoxRS‑regulated inner membrane protein |
| RA | 1,042,761 | G→T | 8.7% | P214Q (CCG→CAG) | gfcD ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,052,241 | C→A | 6.6% | P175P (CCC→CCA) | torT → | periplasmic sensory protein associated with the TorRS two‑component regulatory system |
| RA | 1,072,820 | G→T | 6.8% | Q507K (CAG→AAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,079,245 | G→T | 7.5% | V138V (GTG→GTT) | efeB → | deferrrochelatase, periplasmic |
| RA | 1,091,136 | G→T | 15.8% | pseudogene (176/342 nt) | ymdE → | pseudogene |
| RA | 1,096,068 | G→T | 6.6% | G106V (GGG→GTG) | ycdZ → | DUF1097 family inner membrane protein |
| RA | 1,122,072 | C→A | 7.0% | R154S (CGC→AGC) | yceH → | UPF0502 family protein |
| RA | 1,123,723 | G→T | 7.0% | L143L (CTG→CTT) | murJ → | putative peptidoglycan lipid II flippase |
| RA | 1,172,640 | G→T | 15.8% | G189V (GGG→GTG) | lolD → | outer membrane‑specific lipoprotein transporter subunit |
| RA | 1,177,019 | G→T | 14.8% | H55N (CAT→AAT) | ymfA ← | DUF3592 family inner membrane protein |
| RA | 1,200,837 | G→T | 8.2% | pseudogene (978/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,218,978 | C→T | 6.5% | intergenic (+73/‑42) | ymgJ → / → ycgI | uncharacterized protein/pseudogene |
| RA | 1,255,456 | G→T | 6.8% | F268L (TTC→TTA) | dauA ← | C4‑dicarboxylic acid transporter |
| RA | 1,256,841 | G→T | 11.3% | P164Q (CCA→CAA) | prs ← | phosphoribosylpyrophosphate synthase |
| RA | 1,264,970 | G→A | 8.0% | intergenic (+125/+189) | rdlA → / ← ldrB | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA/toxic polypeptide, small |
| RA | 1,266,001 | G→T | 7.5% | intergenic (+85/+204) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| RA | 1,273,396 | G→T | 10.5% | intergenic (‑322/‑17) | narX ← / → narK | sensory histidine kinase in two‑component regulatory system with NarL/nitrate/nitrite transporter |
| RA | 1,282,243 | G→A | 5.7% | intergenic (+261/+279) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,249 | A→G | 6.9% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,287 | T→A | 8.9% | intergenic (+305/+235) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 5.1% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,497 | A→G | 8.8% | intergenic (+515/+25) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,287,985 | C→A | 8.3% | D132Y (GAT→TAT) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,303,847 | C→A | 12.1% | G227V (GGG→GTG) | kch ← | voltage‑gated potassium channel |
| RA | 1,310,804 | C→A | 9.6% | A226S (GCA→TCA) | trpA ← | tryptophan synthase, alpha subunit |
| RA | 1,322,685 | C→A | 6.9% | G229C (GGC→TGC) | yciK ← | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase |
| RA | 1,323,392 | C→A | 7.0% | intergenic (‑23/‑197) | yciK ← / → sohB | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase/inner membrane protein, S49 peptidase family protein |
| RA | 1,329,553 | C→A | 12.0% | V2V (GTC→GTA) | yciX → | uncharacterized protein |
| RA | 1,336,774 | T→C | 5.9% | G199G (GGT→GGC) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,783 | C→G | 6.2% | R202R (CGC→CGG) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,786:1 | +G | 6.2% | coding (609/738 nt) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,789 | T→G | 5.7% | I204M (ATT→ATG) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,790 | A→G | 5.8% | M205V (ATG→GTG) ‡ | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,791 | T→A | 5.9% | M205K (ATG→AAG) ‡ | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,336,793 | A→C | 5.9% | T206P (ACG→CCG) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,340,543 | C→A | 7.4% | G153W (GGG→TGG) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
| RA | 1,343,979 | G→T | 7.8% | T129K (ACG→AAG) | yciW ← | putative oxidoreductase |
| RA | 1,345,091 | G→A | 6.9% | A69V (GCC→GTC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent |
| RA | 1,355,323 | G→T | 13.7% | intergenic (‑158/‑54) | puuA ← / → puuD | glutamate‑‑putrescine ligase/gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,370,455 | G→T | 11.8% | V55V (GTG→GTT) | ycjR → | putative TIM alpha/beta barrel enzyme |
| RA | 1,373,074 | G→T | 14.8% | D312Y (GAC→TAC) | ycjT → | putative family 65 glycosyl hydrolase |
| RA | 1,374,200 | G→T | 10.8% | W687L (TGG→TTG) | ycjT → | putative family 65 glycosyl hydrolase |
| RA | 1,378,247 | G→T | 8.7% | intergenic (‑29/‑127) | ycjW ← / → ycjX | LacI family putative transcriptional repressor/DUF463 family protein, putative P‑loop NTPase |
| RA | 1,392,933 | C→A | 12.5% | intergenic (‑54/+98) | uspE ← / ← fnr | stress‑induced protein/oxygen‑sensing anaerobic growth regulon transcriptional regulator; autorepressor |
| RA | 1,402,792 | C→A | 9.8% | I162I (ATC→ATA) | ydaN → | putative Zn(II) transporter |
| RA | 1,422,040 | A→G | 15.2% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 15.4% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 5.5% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,460,689 | A→G | 10.4% | pseudogene (1041/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,470,314 | C→T | 12.9% | A305V (GCG→GTG) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,475,967 | G→T | 8.7% | G268W (GGG→TGG) | ynbD → | putative phosphatase inner membrane protein |
| RA | 1,491,925 | G→T | 11.4% | Q271H (CAG→CAT) | opgD → | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
| RA | 1,493,541 | C→A | 9.8% | A116E (GCA→GAA) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,522,194 | C→T | 5.9% | pseudogene (36/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,522,197 | G→T | 5.9% | pseudogene (39/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,522,198 | T→G | 6.3% | pseudogene (40/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,522,200 | G→C | 5.6% | pseudogene (42/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,522,209 | C→T | 5.8% | pseudogene (51/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,526,840 | G→A | 8.0% | G256G (GGG→GGA) | ydcC → | H repeat‑associated putative transposase |
| RA | 1,535,454 | C→T | 12.5% | G465D (GGC→GAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,551,840 | G→T | 10.9% | A152A (GCC→GCA) | ddpF ← | D,D‑dipeptide permease system, ATP‑binding component |
| RA | 1,567,028 | G→A | 6.3% | S811L (TCG→TTG) | pqqL ← | putative periplasmic M16 family zinc metalloendopeptidase |
| RA | 1,582,366 | G→T | 7.7% | S63Y (TCT→TAT) | ydeR ← | putative fimbrial‑like adhesin protein |
| RA | 1,585,098 | C→A | 9.1% | intergenic (‑305/+13) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,590,935 | G→T | 10.6% | pseudogene (1310/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,619,903 | G→A | 8.3% | R579W (CGG→TGG) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,631,894 | C→A | 14.8% | S49I (AGC→ATC) | gnsB ← | Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) |
| RA | 1,650,950 | G→T | 12.5% | L170L (CTG→CTT) | speG → | spermidine N1‑acetyltransferase |
| RA | 1,672,825 | G→T | 17.3% | A48S (GCT→TCT) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,703,023 | C→A | 8.3% | V616V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,705,492 | G→T | 13.4% | M136I (ATG→ATT) | rsxE → | SoxR iron‑sulfur cluster reduction factor component; electron transport inner membrane NADH‑quinone reductase |
| RA | 1,712,178 | G→T | 7.3% | A29A (GCC→GCA) | pdxH ← | pyridoxine 5'‑phosphate oxidase |
| RA | 1,718,730 | G→T | 9.6% | P61P (CCC→CCA) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,736,118 | C→A | 20.0% | S150Y (TCT→TAT) | cfa → | cyclopropane fatty acyl phospholipid synthase (unsaturated‑phospholipid methyltransferase) |
| RA | 1,752,675 | G→T | 6.8% | A103E (GCA→GAA) | ldtE ← | murein L,D‑transpeptidase |
| RA | 1,754,720 | C→A | 9.1% | G21C (GGT→TGT) | sufS ← | cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP‑dependent |
| RA | 1,836,334 | G→A | 9.6% | P20L (CCG→CTG) | ynjH ← | DUF1496 family protein |
| RA | 1,861,910 | G→A | 5.7% | G249D (GGT→GAT) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,869,494 | A→G | 10.2% | L114L (TTA→CTA) | yeaM ← | putative DNA‑binding transcriptional regulator |
| RA | 1,875,411 | G→T | 7.5% | T219N (ACC→AAC) | dmlR ← | transcriptional activator of dmlA |
| RA | 1,893,055 | G→T | 9.9% | L124L (CTG→CTT) | yoaD → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
| RA | 1,928,247 | C→A | 6.7% | M205I (ATG→ATT) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,938,665 | C→A | 18.1% | G317W (GGG→TGG) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,946,755 | G→A | 8.4% | G78D (GGC→GAC) | yecN → | MAPEG family inner membrane protein |
| RA | 1,958,199 | C→A | 10.0% | R370L (CGA→CTA) | flhA ← | putative flagellar export pore protein |
| RA | 2,015,868 | C→A | 13.4% | A173A (GCC→GCA) | fliP → | flagellar biosynthesis protein |
| RA | 2,031,801 | G→T | 6.2% | P168P (CCC→CCA) | yedW ← | response regulator family protein |
| RA | 2,056,551 | Δ1 bp | 6.1% | coding (254/933 nt) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,056,552 | Δ1 bp | 6.1% | coding (253/933 nt) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,056,553 | Δ1 bp | 6.1% | coding (252/933 nt) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,056,554 | Δ1 bp | 6.1% | coding (251/933 nt) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,056,555 | Δ1 bp | 6.1% | coding (250/933 nt) | ldtA ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 2,067,892 | G→T | 7.4% | W958L (TGG→TTG) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,073,088 | C→A | 7.9% | V329L (GTG→TTG) | yeeA ← | putative transporter, FUSC family inner membrane protein |
| RA | 2,074,677 | C→T | 5.3% | E23K (GAA→AAA) | sbmC ← | DNA gyrase inhibitor |
| RA | 2,097,794 | C→A | 23.6% | W66L (TGG→TTG) | wbbK ← | lipopolysaccharide biosynthesis protein |
| RA | 2,112,339 | G→T | 8.3% | A434E (GCG→GAG) | wzxC ← | putative colanic acid exporter |
| RA | 2,119,512 | C→T | 7.4% | R64R (CGG→CGA) | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,121,436 | G→T | 10.8% | L120L (CTC→CTA) | gmd ← | GDP‑D‑mannose dehydratase, NAD(P)‑binding |
| RA | 2,122,185 | G→T | 11.5% | P62Q (CCG→CAG) | wcaF ← | putative acyl transferase |
| RA | 2,147,724 | C→A | 8.4% | L76L (CTC→CTA) | mdtA → | multidrug efflux system, subunit A |
| RA | 2,199,283 | C→T | 5.8% | P37L (CCG→CTG) | yehM → | uncharacterized protein |
| RA | 2,199,438 | G→T | 6.7% | A89S (GCC→TCC) | yehM → | uncharacterized protein |
| RA | 2,224,091 | G→A | 8.3% | intergenic (‑227/‑12) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,241,133 | C→T | 5.1% | L293L (CTG→CTA) | lysP ← | lysine transporter |
| RA | 2,250,111 | G→T | 10.5% | S235* (TCG→TAG) | psuT ← | putative nucleoside transporter |
| RA | 2,278,730 | C→A | 5.4% | F292L (TTC→TTA) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,286,111 | C→A | 5.4% | K111N (AAG→AAT) | dsbE ← | periplasmic thioredoxin of cytochrome c‑type biogenesis |
| RA | 2,299,422 | G→A | 11.8% | A271V (GCG→GTG) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,307,218 | C→A | 13.1% | P84P (CCC→CCA) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,311,679 | C→T | 9.3% | L559L (CTG→CTA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,312,340 | C→A | 10.8% | R339L (CGA→CTA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,316,985 | C→A | 12.1% | T20T (ACC→ACA) | atoD → | acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,327,125 | C→T | 7.0% | pseudogene (757/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,341,502 | G→T | 8.3% | A214S (GCT→TCT) | nrdB → | ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| RA | 2,350,805 | C→T | 6.0% | D141D (GAC→GAT) | yfaD → | transposase_31 family protein |
| RA | 2,366,237 | C→A | 11.2% | P68T (CCG→ACG) | arnE → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,384,069 | G→T | 8.7% | L306I (CTC→ATC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,398,475 | A→G | 8.2% | L26P (CTG→CCG) | nuoA ← | NADH:ubiquinone oxidoreductase, membrane subunit A |
| RA | 2,428,083 | C→T | 8.3% | T46T (ACG→ACA) | dedA ← | DedA family inner membrane protein |
| RA | 2,428,712 | C→A | 5.3% | G135V (GGG→GTG) | truA ← | tRNA pseudouridine(38‑40) synthase |
| RA | 2,450,091 | C→A | 6.5% | L67L (CTG→CTT) | sixA ← | phosphohistidine phosphatase |
| RA | 2,464,459 | G→T | 5.5% | pseudogene (166/291 nt) | tfaS → | pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| RA | 2,482,029 | C→A | 7.4% | A207S (GCC→TCC) | yfdE ← | acetyl‑CoA:oxalate CoA‑transferase |
| RA | 2,507,777 | G→A | 8.3% | intergenic (+54/‑33) | nupC → / → insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
| RA | 2,524,388 | G→T | 13.0% | H69N (CAC→AAC) | zipA ← | FtsZ stabilizer |
| RA | 2,548,797 | G→T | 13.1% | P97P (CCC→CCA) | eutK ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,571,155 | G→A | 5.8% | G194G (GGC→GGT) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| RA | 2,575,814 | C→A | 19.3% | W108L (TGG→TTG) | ypfG ← | DUF1176 family protein |
| RA | 2,588,749 | G→A | 11.1% | P157L (CCA→CTA) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,594,490 | Δ1 bp | 6.2% | intergenic (+183/‑70) | bcp → / → hyfA | peroxiredoxin; thiol peroxidase, thioredoxin‑dependent/hydrogenase 4, 4Fe‑4S subunit |
| RA | 2,597,916 | G→T | 6.6% | V237V (GTG→GTT) | hyfC → | hydrogenase 4, membrane subunit |
| RA | 2,603,514 | G→T | 9.1% | intergenic (+1/‑9) | hyfG → / → hyfH | hydrogenase 4, subunit/hydrogenase 4, Fe‑S subunit |
| RA | 2,618,622 | G→A | 6.7% | G50D (GGC→GAC) | ppx → | exopolyphosphatase |
| RA | 2,633,102 | G→T | 6.8% | S278Y (TCC→TAC) | hisS ← | histidyl tRNA synthetase |
| RA | 2,652,183 | T→A | 7.8% | S38C (AGC→TGC) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,653,960 | C→A | 7.4% | E311* (GAG→TAG) | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 2,662,776 | C→A | 9.7% | P129Q (CCA→CAA) | hcaE → | 3‑phenylpropionate dioxygenase, large (alpha) subunit |
| RA | 2,667,655 | G→T | 7.8% | L131L (CTC→CTA) | yphB ← | mutarotase superfamily protein, YphB family |
| RA | 2,668,853 | C→A | 7.4% | D90Y (GAC→TAC) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 2,668,994 | C→T | 5.7% | D43N (GAT→AAT) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 2,671,727 | C→A | 14.3% | intergenic (‑7/+16) | yphE ← / ← yphF | putative sugar transporter subunit of ABC superfamily, ATP‑binding component/putative ABC superfamily sugar transporter periplasmic‑binding protein |
| RA | 2,682,560 | T→A | 6.0% | Q102H (CAA→CAT) | yfhG ← | putative outer membrane protein modulating the QseEF response |
| RA | 2,705,502 | C→T | 6.1% | A208T (GCA→ACA) | trmN ← | tRNA1(Val) (adenine(37)‑N6)‑methyltransferase |
| RA | 2,706,533 | C→A | 13.6% | S93S (TCC→TCA) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,706,653 | G→T | 13.1% | T133T (ACG→ACT) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,707,697 | C→G | 6.6% | intergenic (+108/+101) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,707,699 | C→A | 7.0% | intergenic (+110/+99) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,707,702 | T→A | 7.3% | intergenic (+113/+96) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,707,703 | C→T | 7.3% | intergenic (+114/+95) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,726,753 | T→C | 6.1% | K260K (AAA→AAG) | clpB ← | protein disaggregation chaperone |
| RA | 2,762,053 | T→A | 7.7% | A10A (GCT→GCA) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,059 | T→C | 7.7% | N12N (AAT→AAC) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,793,615 | C→T | 5.3% | S37S (AGC→AGT) | ygaM → | DUF883 family protein, putative membrane‑anchored ribosome‑binding protein |
| RA | 2,800,456 | C→T | 7.4% | intergenic (+23/‑35) | proW → / → proX | glycine betaine transporter subunit/glycine betaine transporter subunit |
| RA | 2,809,333 | G→T | 10.5% | P156T (CCA→ACA) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,830,666 | C→A | 8.9% | C40F (TGT→TTT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
| RA | 2,830,850 | C→A | 10.1% | intergenic (‑66/+87) | hypF ← / ← hydN | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| RA | 2,836,035 | G→T | 15.5% | P123Q (CCG→CAG) | hycI ← | protease involved in processing C‑terminal end of HycE |
| RA | 2,841,555 | C→T | 9.5% | R349H (CGT→CAT) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 2,863,294 | G→T | 6.2% | R114S (CGT→AGT) | umpG ← | broad specificity 5'(3')‑nucleotidase and polyphosphatase |
| RA | 2,874,305 | C→A | 10.9% | G35W (GGG→TGG) | casD ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,894,141 | C→A | 7.8% | P64H (CCC→CAC) | yqcE → | MFS transporter family protein |
| RA | 2,903,483 | C→A | 8.6% | A188S (GCT→TCT) | mazG ← | nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,941,012 | G→A | 13.3% | noncoding (47/77 nt) | metV → | tRNA‑Met |
| RA | 2,946,517 | G→A | 9.7% | A949V (GCG→GTG) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,966,555 | C→A | 9.3% | V223L (GTG→TTG) | lplT ← | lysophospholipid transporter |
| RA | 2,977,481 | C→T | 7.1% | M1V (GTG→GTA) † | kduI ← | hexuronate isomerase; hexuronate utilization in high osmolarity |
| RA | 2,999,606 | C→A | 7.9% | intergenic (‑461/‑15) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
| RA | 3,005,767 | G→T | 16.5% | intergenic (+15/+206) | yqeA → / ← yqeB | putative amino acid kinase/XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
| RA | 3,011,777 | G→T | 6.6% | E787* (GAA→TAA) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,021,200 | C→A | 7.2% | L241M (CTG→ATG) | ygfQ → | putative purine permease |
| RA | 3,030,927 | C→T | 6.2% | R180H (CGC→CAC) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,036,448 | G→A | 18.2% | S20S (AGC→AGT) | yqfA ← | hemolysin III family HylIII inner membrane protein |
| RA | 3,064,718 | T→G | 12.3% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,065,586 | C→A | 7.4% | L132L (CTG→CTT) | pgk ← | phosphoglycerate kinase |
| RA | 3,087,155 | C→T | 8.1% | S99S (AGC→AGT) | yqgF → | putative Holliday junction resolvase |
| RA | 3,111,338 | G→T | 10.1% | P378P (CCC→CCA) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,198,382 | C→A | 8.0% | T110T (ACC→ACA) | plsY → | putative glycerol‑3‑phosphate acyltransferase |
| RA | 3,237,226 | C→A | 9.1% | W292L (TGG→TTG) | uxaC ← | uronate isomerase |
| RA | 3,241,190 | C→A | 6.0% | A20D (GCC→GAC) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein |
| RA | 3,287,349 | C→A | 8.5% | D197E (GAC→GAA) | lpoA → | OM lipoprotein stimulator of MrcA transpeptidase |
| RA | 3,295,392 | G→T | 6.9% | T183T (ACG→ACT) | yhbU → | U32 peptidase family protein |
| RA | 3,323,297 | C→A | 6.8% | P326T (CCT→ACT) | dacB → | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | 3,324,747 | G→T | 6.2% | H123N (CAC→AAC) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,327,511 | T→G | 8.8% | L148R (CTG→CGG) | ispB → | octaprenyl diphosphate synthase |
| RA | 3,330,767 | G→A | 7.7% | Q162* (CAG→TAG) | mlaC ← | ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein |
| RA | 3,350,633 | G→A | 6.1% | P850P (CCG→CCA) | gltB → | glutamate synthase, large subunit |
| RA | 3,362,487 | C→A | 5.4% | P117P (CCG→CCT) | yhcH ← | DUF386 family protein, cupin superfamily |
| RA | 3,364,026 | G→T | 8.5% | H124N (CAT→AAT) | nanE ← | putative N‑acetylmannosamine‑6‑P epimerase |
| RA | 3,376,327 | G→T | 7.7% | G257C (GGC→TGC) | degS → | serine endoprotease, periplasmic |
| RA | 3,392,695 | G→T | 6.4% | R215S (CGT→AGT) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,415,190 | G→T | 10.6% | G169G (GGG→GGT) | yhdY → | putative amino‑acid transporter subunit |
| RA | 3,416,890 | T→G | 17.6% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 9.3% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,427,211 | C→A | 7.4% | H55N (CAT→AAT) | def → | peptide deformylase |
| RA | 3,435,321:1 | +A | 5.6% | coding (137/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,321:2 | +C | 5.6% | coding (137/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,321:3 | +C | 5.6% | coding (137/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,322:1 | +C | 5.6% | coding (136/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,322:2 | +G | 5.6% | coding (136/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,322:3 | +G | 5.6% | coding (136/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,323:1 | +C | 5.6% | coding (135/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,323:2 | +A | 5.6% | coding (135/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,323:3 | +C | 5.6% | coding (135/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,323:4 | +C | 5.6% | coding (135/390 nt) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,435,326 | C→G | 7.0% | W44C (TGG→TGC) | rpsK ← | 30S ribosomal subunit protein S11 |
| RA | 3,478,876:1 | +C | 8.5% | coding (302/405 nt) | yhfA ← | OsmC family protein |
| RA | 3,478,876:2 | +G | 8.5% | coding (302/405 nt) | yhfA ← | OsmC family protein |
| RA | 3,478,876:3 | +G | 8.5% | coding (302/405 nt) | yhfA ← | OsmC family protein |
| RA | 3,478,876:4 | +G | 8.5% | coding (302/405 nt) | yhfA ← | OsmC family protein |
| RA | 3,495,185 | C→T | 7.0% | L187F (CTC→TTC) | frlB → | fructoselysine‑6‑P‑deglycase |
| RA | 3,496,316 | G→T | 5.2% | L206L (CTG→CTT) | frlC → | fructoselysine 3‑epimerase |
| RA | 3,505,455 | C→A | 5.9% | V83V (GTG→GTT) | yhfZ ← | putative DNA‑binding transcriptional regulator |
| RA | 3,512,110 | G→A | 9.5% | T105M (ACG→ATG) | aroK ← | shikimate kinase I |
| RA | 3,521,491 | C→T | 11.8% | T555I (ACC→ATC) | yrfF → | inner membrane protein |
| RA | 3,534,225 | C→A | 12.5% | R154S (CGC→AGC) | feoB → | fused ferrous iron transporter, protein B: GTP‑binding protein/membrane protein |
| RA | 3,590,908 | C→A | 11.8% | A5S (GCG→TCG) | livK ← | leucine transporter subunit |
| RA | 3,611,549 | C→A | 7.0% | V138V (GTC→GTA) | nikE → | nickel transporter subunit |
| RA | 3,616,061 | T→C | 5.2% | Y1170Y (TAT→TAC) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,617,301 | A→C | 15.4% | pseudogene (55/351 nt) | yrhC → | pseudogene fragment |
| RA | 3,617,887 | T→C | 7.3% | F50F (TTT→TTC) | yhhI → | putative transposase |
| RA | 3,618,160 | A→G | 12.0% | G141G (GGA→GGG) | yhhI → | putative transposase |
| RA | 3,632,623 | G→T | 8.7% | intergenic (+122/+122) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,638,069 | A→G | 7.1% | R158R (CGT→CGC) | prlC ← | oligopeptidase A |
| RA | 3,655,351 | C→A | 5.1% | T526T (ACC→ACA) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,677,967 | C→A | 9.3% | G338C (GGT→TGT) | yhjK ← | cyclic‑di‑GMP phosphodiesterase |
| RA | 3,705,495 | G→T | 8.2% | intergenic (‑128/+101) | yhjX ← / ← yhjY | pyruvate‑inducible inner membrane protein, putative transporter/autotransporter beta‑domain protein |
| RA | 3,723,046 | C→T | 5.6% | M360I (ATG→ATA) | xylA ← | D‑xylose isomerase |
| RA | 3,742,456 | C→A | 11.8% | P174T (CCT→ACT) | sgbH → | 3‑keto‑L‑gulonate 6‑phosphate decarboxylase |
| RA | 3,781,212 | G→T | 7.4% | G339C (GGT→TGT) | envC → | activator of AmiB,C murein hydrolases, septal ring factor |
| RA | 3,806,482 | C→T | 5.7% | A131V (GCC→GTC) | dfp → | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| RA | 3,819,698 | G→T | 10.0% | G377C (GGT→TGT) | recG → | ATP‑dependent DNA helicase |
| RA | 3,842,116 | C→A | 6.4% | G461W (GGG→TGG) | uhpB ← | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| RA | 3,843,111 | G→T | 8.0% | P129H (CCC→CAC) | uhpB ← | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| RA | 3,849,701 | C→A | 11.4% | intergenic (‑34/‑74) | yidH ← / → yidI | DUF202 family inner membrane protein/inner membrane protein |
| RA | 3,851,204 | C→A | 6.8% | V187V (GTG→GTT) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,861,859 | G→T | 5.6% | L271M (CTG→ATG) | yidR ← | DUF3748 family protein |
| RA | 3,896,548 | C→A | 6.4% | E172* (GAA→TAA) | bglB ← | cryptic phospho‑beta‑glucosidase B |
| RA | 3,908,699 | C→A | 6.3% | intergenic (‑139/+214) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,911,251 | G→T | 7.8% | F125L (TTC→TTA) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,923,931 | G→T | 13.8% | L175M (CTG→ATG) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
| RA | 3,933,454 | G→T | 12.3% | P173P (CCC→CCA) | hsrA ← | putative multidrug or homocysteine efflux system |
| RA | 3,934,559 | C→A | 11.1% | L43L (CTG→CTT) | yieP ← | putative transcriptional regulator |
| RA | 3,941,493 | Δ1 bp | 7.1% | coding (48/339 nt) | yifE → | UPF0438 family protein |
| RA | 3,947,728 | C→A | 9.5% | T297T (ACC→ACA) | ilvD → | dihydroxyacid dehydratase |
| RA | 3,950,773 | C→A | 7.5% | V136V (GTG→GTT) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 3,970,297 | T→A | 5.4% | F220L (TTT→TTA) | wzxE → | O‑antigen translocase |
| RA | 3,971,404 | A→G | 9.5% | M174V (ATG→GTG) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| RA | 3,984,676 | G→A | 5.9% | G55D (GGT→GAT) | cyaA → | adenylate cyclase |
| RA | 3,991,518 | C→A | 14.7% | A59E (GCG→GAG) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,008,824 | G→T | 6.3% | H236N (CAT→AAT) | ysgA ← | putative carboxymethylenebutenolidase |
| RA | 4,024,304 | G→T | 5.9% | L10I (CTT→ATT) | fadB ← | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 4,028,635 | A→G | 36.4% | intergenic (+122/‑256) | hemG → / → rrsA | protoporphyrin oxidase, flavoprotein/16S ribosomal RNA of rrnA operon |
| RA | 4,071,404 | C→T | 10.2% | T199I (ACC→ATC) | yiiD → | putative acetyltransferase |
| RA | 4,078,537 | G→T | 6.9% | H216N (CAC→AAC) | fdoG ← | formate dehydrogenase‑O, large subunit |
| RA | 4,089,933 | C→A | 12.3% | G174V (GGG→GTG) | rhaT ← | L‑rhamnose:proton symporter |
| RA | 4,092,301 | G→T | 13.3% | L228L (CTG→CTT) | kdgT → | 2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 4,116,114 | C→T | 5.9% | A209T (GCA→ACA) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,127,917 | G→T | 8.9% | Y349* (TAC→TAA) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,135,627 | C→A | 10.4% | R569S (CGC→AGC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,163,914 | A→G | 10.3% | Q302R (CAG→CGG) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
| RA | 4,165,384 | C→A | 5.1% | noncoding (69/76 nt) | thrU → | tRNA‑Thr |
| RA | 4,165,449 | C→T | 20.2% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 20.0% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,173,034 | C→T | 17.7% | S621F (TCC→TTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,178,500 | C→T | 77.2% | R1075C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,188,832 | G→T | 8.3% | E39* (GAG→TAG) | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,191,263 | C→A | 10.7% | P118P (CCG→CCT) | zraP ← | Zn‑dependent periplasmic chaperone |
| RA | 4,202,970 | C→T | 30.5% | noncoding (3/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,217,090 | G→T | 9.5% | W1112L (TGG→TTG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,224,570 | C→A | 6.5% | S295S (TCC→TCA) | pgi → | glucosephosphate isomerase |
| RA | 4,238,850 | C→T | 13.0% | Q318* (CAG→TAG) | lamB → | maltose outer membrane porin (maltoporin) |
| RA | 4,251,082 | G→T | 14.9% | D186Y (GAT→TAT) | yjbM → | uncharacterized protein |
| RA | 4,261,710 | G→T | 5.5% | P697Q (CCA→CAA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,262,878 | G→T | 6.8% | R308S (CGT→AGT) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,266,783 | C→T | 6.2% | A462V (GCG→GTG) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,283,069 | G→T | 6.3% | G544* (GGA→TGA) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,286,214 | T→C | 7.3% | intergenic (+492/+39) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,301,075 | C→A | 6.1% | G262V (GGA→GTA) | alsB ← | D‑allose transporter subunit |
| RA | 4,301,118 | C→A | 8.5% | G248C (GGT→TGT) | alsB ← | D‑allose transporter subunit |
| RA | 4,304,438 | C→A | 5.9% | W161L (TGG→TTG) | phnP ← | 5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,325,571 | C→A | 7.9% | L426L (CTG→CTT) | adiC ← | arginine:agmatine antiporter |
| RA | 4,346,893 | C→A | 6.1% | V514V (GTG→GTT) | cadA ← | lysine decarboxylase, acid‑inducible |
| RA | 4,355,525 | G→A | 5.6% | P356S (CCG→TCG) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,364,724 | G→A | 6.8% | L251L (CTG→TTG) | epmB ← | EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| RA | 4,377,061 | G→T | 6.4% | F709L (TTC→TTA) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,381,069:1 | +G | 7.4% | coding (258/1053 nt) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,443,450 | G→T | 7.4% | L17F (TTG→TTT) | yjfF → | inner membrane putative ABC superfamily sugar transporter permease |
| RA | 4,450,791 | C→A | 8.7% | V563L (GTG→TTG) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,465,093 | C→T | 10.5% | Q139* (CAG→TAG) | tabA → | biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily |
| RA | 4,508,484 | C→T | 15.9% | A47A (GCC→GCT) | insA → | IS1 repressor TnpA |
| RA | 4,508,490 | G→A | 16.7% | Q49Q (CAG→CAA) | insA → | IS1 repressor TnpA |
| RA | 4,508,826 | G→A | 5.9% | pseudogene (289/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,512,887 | C→A | 9.6% | R342L (CGA→CTA) | yjhG ← | putative dehydratase |
| RA | 4,545,681 | C→A | 6.2% | G153C (GGT→TGT) | yjiC ← | uncharacterized protein |
| RA | 4,548,219 | C→A | 5.1% | M375I (ATG→ATT) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,551,791 | C→T | 8.3% | P234P (CCG→CCA) | yjiJ ← | DUF1228 family putative inner membrane MFS superfamily transporter |
| RA | 4,596,056 | A→G | 17.0% | noncoding (48/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,612,376:1 | +A | 6.2% | coding (791/1332 nt) | yjjJ → | putative protein kinase |
| RA | 4,612,376:2 | +A | 6.2% | coding (791/1332 nt) | yjjJ → | putative protein kinase |
| RA | 4,612,376:3 | +T | 6.2% | coding (791/1332 nt) | yjjJ → | putative protein kinase |
| RA | 4,612,376:4 | +C | 6.2% | coding (791/1332 nt) | yjjJ → | putative protein kinase |
| RA | 4,612,376:5 | +A | 6.2% | coding (791/1332 nt) | yjjJ → | putative protein kinase |
| RA | 4,612,379 | T→C | 6.4% | L265P (CTT→CCT) | yjjJ → | putative protein kinase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 80526 | 80621 | 96 | 8 [7] | [7] 9 | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | * | ÷ | CP009273 | 1524248 | 1524431 | 184 | 8 [7] | [7] 9 | ydcD | uncharacterized protein |
| * | * | ÷ | CP009273 | 2027294 | 2027423 | 130 | 8 [7] | [7] 8 | rseX/yedS | sRNA antisense regulator of ompA and ompC translation, Hfq‑dependent/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | * | ÷ | CP009273 | 2462825 | 2463051 | 227 | 10 [6] | [5] 8 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 2463644 | 2463764 | 121 | 9 [7] | [4] 9 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 3406892 | 3406987 | 96 | 11 [7] | [6] 8 | acrS/acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
| * | * | ÷ | CP009273 | 3448766 | 3448841 | 76 | 9 [7] | [6] 9 | gspA/gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| * | * | ÷ | CP009273 | 3745309 | 3745418 | 110 | 8 [4] | [4] 8 | [yiaU] | [yiaU] |
| * | * | ÷ | CP009273 | 4249426 | 4249935 | 510 | 8 [5] | [6] 8 | [zur] | [zur] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 40 (0.820) | 44 (0.900) | 19/248 | NT | 52.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 776902 | 45 (0.920) | 5 (0.120) | 4/208 | NT | 14.8% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777267 = | 20 (0.490) | intergenic (+159/‑274) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | 1203246 = | 20 (0.410) | 17 (0.400) | 9/216 | NT | 56.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 9 (0.210) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 19 (0.390) | 30 (0.700) | 14/216 | NT | 70.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 9 (0.210) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1972769 = | 32 (0.650) | 4 (0.080) | 3/246 | NT | 11.2% | intergenic (‑315/‑465) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 46 (0.950) | 22/244 | NT | 88.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 6 (0.120) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | = 2399639 | 6 (0.120) | 57 (1.160) | 26/248 | NT | 90.5% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||