mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 174,324 | G→T | 7.9% | P209Q (CCA→CAA) | btuF ← | vitamin B12 transporter subunit: periplasmic‑binding component of ABC superfamily |
| RA | 221,420 | A→G | 5.1% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 6.9% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 6.9% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 8.3% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,464 | G→C | 9.5% | noncoding (1207/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,471 | C→T | 12.0% | noncoding (1214/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 328,417 | C→A | 7.3% | A112A (GCC→GCA) | yahA → | c‑di‑GMP‑specific phosphodiesterase |
| RA | 401,203 | C→A | 5.6% | intergenic (‑103/‑17) | proC ← / → yaiI | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding/UPF0178 family protein |
| RA | 492,072 | G→T | 5.8% | E499D (GAG→GAT) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 542,481 | C→A | 6.8% | P116T (CCC→ACC) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 573,652 | A→C | 7.1% | A30A (GCA→GCC) | rzpD → | DLP12 prophage; putative murein endopeptidase |
| RA | 592,480 | C→T | 9.7% | intergenic (+51/‑107) | cusC → / → cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| RA | 592,514 | G→C | 9.9% | intergenic (+85/‑73) | cusC → / → cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| RA | 648,022 | C→A | 7.7% | P111H (CCT→CAT) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 674,589 | C→A | 5.2% | E92* (GAG→TAG) | ybeT ← | Sel1 family TPR‑like repeat protein |
| RA | 683,151 | C→A | 6.8% | G18V (GGA→GTA) | gltI ← | glutamate, aspartate binding protein, periplasmic; part of GltJKLI ABC transporter |
| RA | 725,992 | C→A | 5.4% | P318P (CCC→CCA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 777,084 | G→T | 5.1% | noncoding (52/76 nt) | lysQ → | tRNA‑Lys |
| RA | 792,441 | G→T | 7.0% | L144L (CTG→CTT) | modC → | molybdate transporter subunit |
| RA | 792,787 | G→T | 5.2% | V260F (GTC→TTC) | modC → | molybdate transporter subunit |
| RA | 811,099:1 | +C | 9.9% | intergenic (+96/+96) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 811,100 | G→T | 10.3% | intergenic (+97/+95) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 829,527 | C→T | 5.7% | H334H (CAC→CAT) | dinG → | ATP‑dependent DNA helicase |
| RA | 845,610 | C→A | 5.4% | intergenic (‑57/‑296) | rhtA ← / → ompX | threonine and homoserine efflux system/outer membrane protein X |
| RA | 871,679 | C→T | 6.5% | L297L (CTG→TTG) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 1,003,179 | T→C | 7.2% | intergenic (‑123/‑121) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,003,183 | T→C | 7.4% | intergenic (‑127/‑117) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,003,184 | T→A | 7.4% | intergenic (‑128/‑116) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,003,185 | A→G | 7.3% | intergenic (‑129/‑115) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,003,235 | C→T | 5.7% | intergenic (‑179/‑65) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,003,237 | A→G | 5.7% | intergenic (‑181/‑63) | ycbX ← / → rlmL | 6‑N‑hydroxylaminopurine detoxification oxidoreductase/fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase, SAM‑dependent |
| RA | 1,176,020 | G→T | 6.0% | A235E (GCG→GAG) | ycfZ ← | inner membrane protein |
| RA | 1,183,258 | T→C | 5.5% | K147E (AAG→GAG) | roxA ← | 50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,192,506 | G→A | 6.9% | Y161Y (TAC→TAT) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,203,094 | A→G | 10.9% | E46E (GAA→GAG) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,203,106 | G→T | 11.5% | V50V (GTG→GTT) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,203,115 | A→C | 10.7% | A53A (GCA→GCC) | stfP → | e14 prophage; uncharacterized protein |
| RA | 1,264,836 | G→T | 7.0% | noncoding (58/67 nt) | rdlA → | sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR‑A repeat, with toxic peptide LdrA |
| RA | 1,265,353 | T→G | 5.5% | noncoding (40/66 nt) | rdlB → | sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| RA | 1,265,888 | T→G | 5.8% | noncoding (40/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,266,001 | G→T | 6.0% | intergenic (+85/+204) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| RA | 1,282,421 | A→G | 6.5% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 5.2% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,343,332 | C→A | 5.7% | E345* (GAA→TAA) | yciW ← | putative oxidoreductase |
| RA | 1,347,980 | C→A | 7.5% | V266F (GTC→TTC) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,405,248 | T→C | 6.4% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA 2‑thiocytidine biosynthesis protein |
| RA | 1,422,040 | A→G | 7.9% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 8.6% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,461,055 | A→G | 5.3% | pseudogene (1407/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,470,652 | C→A | 5.4% | Q418K (CAG→AAG) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,502,142 | C→A | 7.2% | Q369K (CAG→AAG) | ydcP → | putative peptidase |
| RA | 1,522,209 | C→T | 6.6% | pseudogene (51/2037 nt) | rhsE → | pseudogene, Rhs family protein |
| RA | 1,555,663 | G→A | 5.4% | T359M (ACG→ATG) | ddpA ← | D‑ala‑D‑a la transporter subunit |
| RA | 1,555,694 | C→T | 5.1% | D349N (GAT→AAT) | ddpA ← | D‑ala‑D‑a la transporter subunit |
| RA | 1,599,276 | G→A | 5.5% | A325T (GCC→ACC) | lsrD → | autoinducer 2 import system permease protein |
| RA | 1,624,735:1 | +A | 8.1% | coding (436/1461 nt) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,624,736 | T→A | 8.1% | V145V (GTA→GTT) ‡ | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,624,738 | C→A | 8.3% | V145L (GTA→TTA) ‡ | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,762 | T→C | 6.0% | T115A (ACT→GCT) | stfQ ← | Qin prophage; putative side tail fiber assembly protein |
| RA | 1,677,868 | G→T | 5.6% | E244* (GAA→TAA) | rstB → | sensory histidine kinase of RstAB two‑component system, low Mg‑responsive via PhoQP |
| RA | 1,716,698 | T→C | 6.2% | C107C (TGT→TGC) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
| RA | 1,747,468 | C→A | 6.9% | G207V (GGG→GTG) | ydhV ← | putative oxidoreductase subunit |
| RA | 1,809,351 | G→T | 6.4% | G410* (GGA→TGA) | katE → | catalase HPII, heme d‑containing |
| RA | 1,936,458 | G→A | 5.1% | A128V (GCG→GTG) | znuA ← | zinc transporter subunit: periplasmic‑binding component of ABC superfamily |
| RA | 1,954,648 | A→C | 9.0% | P110P (CCA→CCC) | argS → | arginyl‑tRNA synthetase |
| RA | 2,008,773 | A→C | 8.0% | K138T (AAG→ACG) | fliG → | flagellar motor switching and energizing component |
| RA | 2,055,168 | G→A | 5.1% | H83Y (CAT→TAT) | nac ← | nitrogen assimilation regulon transcriptional regulator; autorepressor |
| RA | 2,090,942 | C→A | 5.9% | V281L (GTG→TTG) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,141,666 | A→G | 6.7% | Q171R (CAG→CGG) | yegD → | Hsp70 chaperone family protein |
| RA | 2,145,158 | G→T | 10.7% | intergenic (+31/+34) | yegJ → / ← yegK | uncharacterized protein/ser/thr phosphatase‑related protein |
| RA | 2,226,129 | G→A | 7.0% | P269P (CCG→CCA) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,231,471 | G→T | 5.6% | P433Q (CCG→CAG) | mglA ← | fused methyl‑galactoside transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 2,262,641 | G→T | 5.1% | V103V (GTG→GTT) | lpxT → | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase |
| RA | 2,272,042 | C→A | 6.4% | intergenic (‑326/+7) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,289,853 | G→T | 5.1% | I217I (ATC→ATA) | ccmB ← | heme exporter subunit |
| RA | 2,310,887 | G→T | 8.3% | D823E (GAC→GAA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,451,682 | C→A | 6.0% | M319I (ATG→ATT) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,458,717 | G→A | 5.4% | intergenic (‑231/‑63) | mlaA ← / → yfdC | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component/putative inner membrane protein |
| RA | 2,471,514 | G→A | 5.6% | L63L (CTG→CTA) | dsdX → | D‑serine transporter |
| RA | 2,514,609 | Δ1 bp | 6.2% | intergenic (+2/‑3) | valY → / → lysV | tRNA‑Val/tRNA‑Lys |
| RA | 2,514,610 | Δ1 bp | 6.2% | intergenic (+3/‑2) | valY → / → lysV | tRNA‑Val/tRNA‑Lys |
| RA | 2,549,820 | C→A | 5.1% | L279F (TTG→TTT) | eutC ← | ethanolamine ammonia‑lyase, small subunit (light chain) |
| RA | 2,567,837 | C→A | 5.6% | D176Y (GAC→TAC) | eutQ ← | RmlC‑like cupin domain protein |
| RA | 2,575,582 | G→T | 5.7% | V185V (GTC→GTA) | ypfG ← | DUF1176 family protein |
| RA | 2,628,316 | G→T | 6.8% | V242V (GTG→GTT) | xseA → | exonuclease VII, large subunit |
| RA | 2,658,659 | C→A | 5.6% | intergenic (+56/‑135) | yfhR → / → csiE | putative S9 family prolyl oligopeptidase/stationary phase inducible protein |
| RA | 2,673,261 | C→A | 7.9% | Q948H (CAG→CAT) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,693,995 | C→A | 5.1% | T121T (ACG→ACT) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,706,407 | C→A | 5.1% | G51G (GGC→GGA) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,712,062 | G→T | 7.1% | intergenic (‑175/‑32) | yfiF ← / → trxC | putative methyltransferase/thioredoxin 2 |
| RA | 2,771,529 | T→C | 5.3% | V1519V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,771,561 | T→C | 5.3% | S1509G (AGT→GGT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,811,397 | T→C | 5.5% | intergenic (‑178/+21) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,404 | Δ1 bp | 5.2% | intergenic (‑185/+14) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,811,406 | T→G | 5.1% | intergenic (‑187/+12) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 3,003,675 | G→T | 6.0% | G97C (GGC→TGC) | hyuA → | D‑stereospecific phenylhydantoinase |
| RA | 3,053,898 | C→A | 7.3% | Q263K (CAA→AAA) | argP → | transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,064,718 | T→G | 5.7% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,196,179 | C→A | 5.5% | T310T (ACC→ACA) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,271,263 | C→A | 5.7% | L254L (CTG→CTT) | agaR ← | transcriptional repressor of the aga regulon |
| RA | 3,278,919 | G→T | 5.2% | R28M (AGG→ATG) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| RA | 3,380,500 | C→A | 7.6% | E350* (GAA→TAA) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,416,890 | T→G | 5.7% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 6.4% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,422,276 | Δ1 bp | 8.3% | intergenic (‑155/‑319) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,422,282 | Δ1 bp | 7.1% | intergenic (‑161/‑313) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,422,286 | T→G | 7.2% | intergenic (‑165/‑309) | rrsD ← / → yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| RA | 3,473,230 | G→A | 5.4% | A246V (GCG→GTG) | kefB ← | potassium:proton antiporter |
| RA | 3,525,253 | G→C | 15.3% | D182E (GAC→GAG) | yhgE ← | DUF4153 family putative inner membrane protein |
| RA | 3,622,287 | G→T | 7.0% | V204V (GTC→GTA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,630,578 | G→T | 5.5% | Q65K (CAG→AAG) | yhiN ← | putative oxidoreductase |
| RA | 3,660,899 | G→T | 5.8% | L14L (CTC→CTA) | gadA ← | glutamate decarboxylase A, PLP‑dependent |
| RA | 3,694,726 | C→A | 5.3% | S268R (AGC→AGA) | yhjV → | putative transporter |
| RA | 3,758,773 | G→C | 5.6% | A1077A (GCG→GCC) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,758,930 | C→A | 6.8% | Q1130K (CAA→AAA) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,822,340 | A→C | 24.5% | Q12H (CAA→CAC) | xanP → | xanthine permease |
| RA | 3,844,463 | C→A | 9.0% | G561V (GGG→GTG) | ilvB ← | acetolactate synthase 2 large subunit |
| RA | 3,851,590 | G→T | 5.5% | L59I (CTA→ATA) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,901,867 | T→G | 6.6% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
| RA | 3,981,437 | C→A | 7.1% | E330D (GAG→GAT) | hemX ← | putative uroporphyrinogen III methyltransferase |
| RA | 4,005,973 | C→A | 6.4% | L68L (CTG→CTT) | metR ← | methionine biosynthesis regulon transcriptional regulator |
| RA | 4,030,856 | A→T | 9.1% | intergenic (+161/‑23) | alaT → / → rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| RA | 4,033,888 | A→C | 5.2% | noncoding (12/120 nt) | rrfA → | 5S ribosomal RNA of rrnA operon |
| RA | 4,098,016 | G→T | 5.2% | L179F (TTG→TTT) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,119,382 | G→T | 5.0% | A261A (GCG→GCT) | metB → | cystathionine gamma‑synthase, PLP‑dependent |
| RA | 4,156,331 | A→G | 41.2% | intergenic (+118/‑256) | murI → / → rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| RA | 4,165,449 | C→T | 17.3% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 17.3% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| JC | 4,173,044 | (45 bp)1→2 | 20.9% | coding (1872/4029 nt) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,178,501 | G→T | 69.8% | R1075L (CGT→CTT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,202,979 | A→C | 23.6% | noncoding (12/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,206,928 | C→A | 7.1% | A508E (GCA→GAA) | aceB → | malate synthase A |
| RA | 4,309,558 | T→C | 5.3% | Q308R (CAG→CGG) | phnI ← | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| RA | 4,319,485 | C→T | 6.3% | H103H (CAC→CAT) | yjcZ → | YjcZ family protein, mutational suppressor of yhjH motility mutation |
| RA | 4,336,205 | G→A | 8.5% | G313G (GGC→GGT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,238 | A→G | 7.7% | R302R (CGT→CGC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,241 | G→A | 8.1% | I301I (ATC→ATT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,244 | A→C | 6.0% | V300V (GTT→GTG) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,380,550 | C→T | 8.3% | P259P (CCG→CCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,394,489 | C→T | 5.7% | intergenic (+89/‑15) | yjeT → / → purA | DUF2065 family protein/adenylosuccinate synthetase |
| RA | 4,508,444 | C→A | 5.7% | P34H (CCT→CAT) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,508,445 | T→C | 5.7% | P34P (CCT→CCC) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,574,730 | G→T | 5.7% | pseudogene (1903/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,577,118 | C→A | 5.7% | P118Q (CCG→CAG) | mrr → | methylated adenine and cytosine restriction protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 4249427 | 4249984 | 558 | 29 [23] | [26] 27 | [zur] | [zur] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 357597 = | NA (NA) | 6 (0.080) | 3/184 | NT | NA | noncoding (4/34 nt) | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 1938507 = | NA (NA) | noncoding (32/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | 360104 = | 66 (0.640) | 85 (0.830) | 33/248 | NT | 56.3% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 370385 | 133 (1.780) | 11 (0.160) | 6/162 | NT | 8.4% | intergenic (+48/‑530) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | = 372977 | NA (NA) | noncoding (187/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 11 (0.160) | 5/162 | NT | 8.2% | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372978 = | 137 (1.830) | intergenic (+211/+13) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 370704 = | 113 (1.100) | 13 (0.150) | 4/210 | NT | 10.1% | noncoding (319/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372963 = | 137 (1.570) | noncoding (173/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 46 (0.450) | 35 (0.390) | 21/216 | NT | 46.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 42 (0.470) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 43 (0.420) | 26 (0.290) | 17/216 | NT | 39.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 42 (0.470) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 121 (1.190) | 38/244 | NT | 87.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2399636 = | 17 (0.170) | coding (485/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
| * | ? | CP009273 | = 2399639 | 17 (0.170) | 107 (1.040) | 38/248 | NT | 86.3% | coding (482/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | = 3124699 | NA (NA) | intergenic (+146/+1) | insH1/yghQ | IS5 transposase and trans‑activator/putative inner membrane polysaccharide flippase | |||||