breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	5.7%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	1,707	G→C	5.9%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	15,847	C→G	9.6%	intergenic (+97/‑742)	gyrB → / → PP_5421	DNA gyrase subunit B/hypothetical protein
RA	15,848	T→A	9.4%	intergenic (+98/‑741)	gyrB → / → PP_5421	DNA gyrase subunit B/hypothetical protein
RA	15,849	T→A	11.3%	intergenic (+99/‑740)	gyrB → / → PP_5421	DNA gyrase subunit B/hypothetical protein
RA	15,850	C→G	9.6%	intergenic (+100/‑739)	gyrB → / → PP_5421	DNA gyrase subunit B/hypothetical protein
RA	27,581	C→T	12.3%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	27,584	A→G	15.0%	intergenic (‑431/+15)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	28,270	A→G	6.9%	C426C (TGT→TGC)	PP_0024 ←	membrane‑associated metal‑dependent hydrolase
RA	36,169	G→T	8.0%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	7.7%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	7.7%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	7.7%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	45,965	T→C	6.6%	Q29R (CAA→CGA)	PP_0042 ←	hypothetical protein
RA	47,646	G→A	7.5%	R577C (CGT→TGT)	czcA‑I ←	cation efflux system protein
RA	51,923	A→T	7.0%	C23S (TGT→AGT)	czcC‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	51,924	G→C	6.8%	L22L (CTC→CTG) ‡	czcC‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	51,925	A→T	6.8%	L22H (CTC→CAC) ‡	czcC‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	58,435	G→C	10.2%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,437	T→A	10.2%	intergenic (‑348/+340)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	11.8%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,747	T→A	10.0%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	10.0%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	60,907	A→G	18.8%	D26G (GAC→GGC)	PP_0052 →	beta‑lactamase domain‑containing protein
RA	78,506	C→T	7.6%	intergenic (‑34/+27)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,507	G→C	7.5%	intergenic (‑35/+26)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,508	G→C	7.6%	intergenic (‑36/+25)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	78,509	A→G	7.6%	intergenic (‑37/+24)	fmt ← / ← def‑I	methionyl‑tRNA formyltransferase/peptide deformylase
RA	85,074	A→G	7.5%	intergenic (+52/+78)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,077	T→G	7.6%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,078:1	+T	7.5%	intergenic (+56/+74)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	7.6%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,091	Δ1 bp	7.3%	intergenic (+69/+61)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,096	C→T	7.2%	intergenic (+74/+56)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	95,387	A→G	6.5%	M15V (ATG→GTG)	PP_0087 →	hypothetical protein
RA	97,594	A→C	10.8%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	101,821	T→A	9.1%	L214* (TTG→TAG)	prlC →	oligopeptidase A
RA	126,115	A→G	6.7%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	146,127	T→A	13.2%	intergenic (+32/‑116)	gltP → / → PP_0138	glutamate/aspartate‑proton DAACS transporter/membrane protein
RA	146,128	T→A	13.0%	intergenic (+33/‑115)	gltP → / → PP_0138	glutamate/aspartate‑proton DAACS transporter/membrane protein
RA	155,543	G→T	6.9%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	6.9%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	182,034	G→A	14.8%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	15.4%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	15.6%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	185,715	T→G	6.6%	I142L (ATC→CTC)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,718	C→G	6.8%	A141P (GCC→CCC)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,723	T→A	6.9%	H139L (CAT→CTT)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,726	T→A	7.0%	K138M (AAG→ATG)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,731	C→G	7.3%	G136G (GGG→GGC)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,734	C→A	7.3%	E135D (GAG→GAT)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	195,234	T→A	5.8%	I247N (ATT→AAT)	PP_0168 →	putative surface adhesion protein
RA	195,236	T→C	5.8%	S248P (TCG→CCG)	PP_0168 →	putative surface adhesion protein
RA	195,539	G→A	13.3%	V349I (GTC→ATC)	PP_0168 →	putative surface adhesion protein
RA	195,559	C→A	37.3%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	13.8%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	14.2%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	44.7%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	5.8%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	19.5%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	23.0%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	30.0%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,372	A→G	7.0%	K626K (AAA→AAG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	28.6%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	9.2%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	13.9%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	6.4%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	6.2%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	12.0%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	13.3%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	15.6%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	10.8%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	204,976	G→C	11.1%	V3494V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	226,659	T→C	7.6%	intergenic (+66/‑67)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,661	A→T	8.1%	intergenic (+68/‑65)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	226,663	G→A	8.0%	intergenic (+70/‑63)	PP_0174 → / → PP_0175	hypothetical protein/transcriptional regulator
RA	233,833	C→G	9.5%	intergenic (+21/+42)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,834	A→T	10.6%	intergenic (+22/+41)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	280,199	A→C	10.4%	L17R (CTG→CGG) ‡	sctS ←	sulfur compound ABC transporter permease
RA	280,200	G→T	9.3%	L17M (CTG→ATG) ‡	sctS ←	sulfur compound ABC transporter permease
RA	280,201	C→G	9.4%	L16L (CTG→CTC) ‡	sctS ←	sulfur compound ABC transporter permease
RA	280,202	A→C	9.2%	L16R (CTG→CGG) ‡	sctS ←	sulfur compound ABC transporter permease
RA	280,203	G→T	10.5%	L16M (CTG→ATG) ‡	sctS ←	sulfur compound ABC transporter permease
RA	284,586	T→A	15.4%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,587	T→A	15.4%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	288,319	A→T	7.0%	intergenic (‑212/‑263)	tauA ← / → oprE	taurine ABC transporter substrate‑binding protein/outer‑membrane porin E
RA	289,942	C→A	8.7%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	9.6%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	9.5%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	290,487	A→G	6.4%	T136A (ACC→GCC)	PP_0235 →	peroxidase
RA	292,606	C→G	9.4%	intergenic (+22/‑38)	ssuA → / → ssuD	aliphatic sulfonatesABC transporter substrate‑binding protein/alkanesulfonate monooxygenase
RA	298,117	C→G	6.3%	intergenic (‑114/+40)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,118	A→C	6.1%	intergenic (‑115/+39)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,119	G→T	6.2%	intergenic (‑116/+38)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	298,120	C→G	6.2%	intergenic (‑117/+37)	gshA ← / ← PP_0244	glutamate‑‑cysteine ligase/hypothetical protein
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	313,965	C→G	11.3%	V192V (GTG→GTC) ‡	yrfG ←	purine nucleotidase
RA	313,966	A→T	11.1%	V192E (GTG→GAG) ‡	yrfG ←	purine nucleotidase
RA	313,967	C→G	11.4%	V192L (GTG→CTG) ‡	yrfG ←	purine nucleotidase
RA	324,136	A→T	5.5%	V35V (GTT→GTA)	PP_0267 ←	ferric siderophore receptor
RA	326,065	C→A	13.1%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	11.5%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,825	G→T	9.2%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	9.5%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	338,065	G→T	5.1%	A168A (GCC→GCA)	PP_0280 ←	amino acid ABC transporter permease
RA	338,068	A→C	5.6%	S167R (AGT→AGG)	PP_0280 ←	amino acid ABC transporter permease
RA	344,032	A→G	10.6%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	10.1%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	10.3%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	345,707	C→A	5.7%	L713L (CTG→CTT)	PP_0287 ←	hypothetical protein
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	355,218	C→A	9.0%	intergenic (‑47/+38)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,219	A→C	9.0%	intergenic (‑48/+37)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,222	G→T	8.8%	intergenic (‑51/+34)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,223	T→G	8.7%	intergenic (‑52/+33)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	358,085	A→G	11.0%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	11.6%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	363,360	G→A	6.6%	G41G (GGC→GGT)	lcdH ←	L‑carnitine dehydrogenase
RA	363,402	C→T	14.9%	L27L (CTG→CTA)	lcdH ←	L‑carnitine dehydrogenase
RA	381,856	T→A	7.2%	D230V (GAC→GTC)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	382,714	T→C	10.6%	intergenic (‑170/‑97)	PP_0317 ← / → PP_0318	methyl‑accepting chemotaxis transducer/hypothetical protein
RA	384,783	C→G	7.1%	R421G (CGC→GGC)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,787	A→T	6.1%	N422I (AAT→ATT)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	384,791	C→G	6.2%	A423A (GCC→GCG)	PP_0320 →	methyl‑accepting chemotaxis transducer
RA	402,756	A→G	7.8%	Y148H (TAC→CAC)	msrA ←	peptide methionine sulfoxide reductase MsrA
RA	403,271	G→C	7.8%	intergenic (‑74/+95)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	408,360	G→A	6.2%	N768N (AAC→AAT)	aceE ←	pyruvate dehydrogenase E1 component
RA	422,059	T→C	6.0%	Q630R (CAG→CGG)	PP_0348 ←	hypothetical protein
RA	422,065	A→C	5.9%	I628S (ATC→AGC)	PP_0348 ←	hypothetical protein
RA	422,067	C→G	6.0%	L627L (CTG→CTC) ‡	PP_0348 ←	hypothetical protein
RA	422,069	G→T	6.4%	L627M (CTG→ATG) ‡	PP_0348 ←	hypothetical protein
RA	431,350	C→T	6.7%	G322S (GGC→AGC)	PP_0354 ←	CBS domain‑containing protein
RA	431,355	A→G	6.7%	L320P (CTG→CCG)	PP_0354 ←	CBS domain‑containing protein
RA	431,362	C→T	6.7%	V318I (GTT→ATT)	PP_0354 ←	CBS domain‑containing protein
RA	462,592	A→T	10.0%	intergenic (‑128/+13)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	462,593	T→A	11.9%	intergenic (‑129/+12)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	462,594	A→T	11.9%	intergenic (‑130/+11)	pqqF ← / ← davA	coenzyme PQQ synthesis protein F/5‑aminopentanamidase
RA	471,066	T→C	6.6%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,067	G→A	6.7%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	473,702	T→C	8.5%	Q428R (CAG→CGG)	dnaG ←	DNA primase
RA	473,705	T→A	8.6%	Q427L (CAG→CTG)	dnaG ←	DNA primase
RA	473,708	G→A	8.2%	P426L (CCG→CTG)	dnaG ←	DNA primase
RA	475,304	G→A	5.8%	A67A (GCC→GCT)	rpsU ←	30S ribosomal protein S21
RA	475,309	G→C	5.8%	R66G (CGC→GGC)	rpsU ←	30S ribosomal protein S21
RA	475,314	T→C	5.5%	Q64R (CAG→CGG)	rpsU ←	30S ribosomal protein S21
RA	479,493	A→G	7.0%	intergenic (‑25/+31)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,496	A→T	6.9%	intergenic (‑28/+28)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	479,499	A→T	7.1%	intergenic (‑31/+25)	cca ← / ← ycgB	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase/type IV piliation protein
RA	480,987	A→G	8.3%	Y36H (TAC→CAC)	ycgB ←	type IV piliation protein
RA	487,825	G→C	10.5%	R159R (CGC→CGG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,829	A→G	10.1%	L158P (CTG→CCG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,831	G→C	10.1%	G157G (GGC→GGG) ‡	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,833	C→T	10.5%	G157S (GGC→AGC) ‡	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	487,837	G→C	10.5%	T155T (ACC→ACG)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	492,314	T→A	7.1%	Q36L (CAG→CTG)	lptD ←	LPS‑assembly protein LptD
RA	492,533	C→T	8.9%	intergenic (‑113/‑18)	lptD ← / → PP_0405	LPS‑assembly protein LptD/hypothetical protein
RA	495,963	G→C	6.3%	A24G (GCC→GGC)	PP_0408 ←	hypothetical protein
RA	495,966	A→T	6.2%	L23Q (CTG→CAG)	PP_0408 ←	hypothetical protein
RA	496,096	T→A	7.8%	intergenic (‑63/‑33)	PP_0408 ← / → PP_0409	hypothetical protein/two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,825	Δ1 bp	15.9%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	15.5%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	15.5%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	15.2%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	532,616	G→C	6.0%	noncoding (35/76 nt)	PP_t03 →	tRNA‑Thr
RA	543,727	A→G	6.7%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	543,730	C→T	6.7%	A657V (GCT→GTT)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	563,005	C→A	5.8%	P30T (CCT→ACT) ‡	rpoA →	DNA‑directed RNA polymerase subunit alpha
RA	563,007	T→G	5.2%	P30P (CCT→CCG) ‡	rpoA →	DNA‑directed RNA polymerase subunit alpha
RA	564,377:1	+A	8.1%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	8.1%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	572,518	A→G	9.1%	I191T (ATC→ACC)	PP_0486 ←	GntR family transcriptional regulator
RA	572,525	C→T	9.6%	V189M (GTG→ATG)	PP_0486 ←	GntR family transcriptional regulator
RA	574,998	C→A	7.8%	A12D (GCC→GAC)	fdoG →	formate dehydrogenase‑O major subunit
RA	578,723	A→G	8.9%	K231R (AAG→AGG)	fdoH →	formate dehydrogenase‑O subunit beta
RA	587,076	C→G	7.9%	P43R (CCG→CGG)	PP_0497 →	Cro/CI family transcriptional regulator
RA	593,433	G→T	8.2%	E391* (GAG→TAG) ‡	PP_0503 →	MFS transporter
RA	593,434	A→C	9.1%	E391A (GAG→GCG) ‡	PP_0503 →	MFS transporter
RA	612,541	C→T	9.2%	E547E (GAG→GAA)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,547	C→A	9.4%	L545L (CTG→CTT)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,551	G→C	9.7%	P544R (CCG→CGG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,555	T→G	9.8%	K543Q (AAG→CAG)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	612,561	A→G	9.8%	F541L (TTC→CTC)	dxs ←	1‑deoxyxylulose‑5‑phosphate synthase
RA	641,388	A→C	5.1%	F155C (TTC→TGC) ‡	bdhA ←	2,3‑butanediol dehydrogenase
RA	641,389	A→T	5.1%	F155I (TTC→ATC) ‡	bdhA ←	2,3‑butanediol dehydrogenase
RA	641,390	G→T	5.1%	G154G (GGC→GGA)	bdhA ←	2,3‑butanediol dehydrogenase
RA	648,287	A→C	11.2%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,289	A→T	7.9%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	651,039	A→G	7.7%	L542P (CTC→CCC)	dsbD‑I ←	thiol/disulfide interchange protein 1
RA	651,660	A→G	6.5%	F335S (TTC→TCC)	dsbD‑I ←	thiol/disulfide interchange protein 1
RA	654,398	C→A	10.9%	L115L (CTG→CTT)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	654,403	T→G	10.1%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	655,675	A→T	7.9%	L223Q (CTG→CAG)	PP_0563 ←	two‑component system response regulator
RA	655,678	T→A	7.5%	E222V (GAG→GTG)	PP_0563 ←	two‑component system response regulator
RA	655,683	G→C	7.6%	G220G (GGC→GGG)	PP_0563 ←	two‑component system response regulator
RA	655,688	T→A	7.2%	T219S (ACC→TCC)	PP_0563 ←	two‑component system response regulator
RA	655,691	A→T	7.3%	C218S (TGC→AGC)	PP_0563 ←	two‑component system response regulator
RA	660,885	T→C	14.3%	intergenic (+17/‑150)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,886	G→A	14.4%	intergenic (+18/‑149)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,893	C→G	14.0%	intergenic (+25/‑142)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,895	T→A	15.5%	intergenic (+27/‑140)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,897	T→C	14.0%	intergenic (+29/‑138)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,898	G→A	14.0%	intergenic (+30/‑137)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,900	T→A	13.8%	intergenic (+32/‑135)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,902	C→G	15.4%	intergenic (+34/‑133)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,909	T→C	14.0%	intergenic (+41/‑126)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,910	G→A	14.3%	intergenic (+42/‑125)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	678,251	C→T	7.2%	S256N (AGC→AAC)	PP_0581 ←	3‑oxoacyl‑ACP reductase
RA	684,841	Δ1 bp	6.9%	coding (1406/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,846:1	+A	7.0%	coding (1401/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	699,722	A→G	54.9%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	10.2%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	10.1%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	10.1%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	715,009:1	+T	7.1%	intergenic (+75/+2)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,016	Δ1 bp	6.9%	coding (478/483 nt)	PP_0607 ←	type IV pili biogenesis protein FimT
RA	758,336	C→A	5.7%	intergenic (+4/+24)	PP_0649 → / ← PP_0650	MutT/nudix family protein/hypothetical protein
RA	778,365	A→G	100%	N472S (AAC→AGC)	PP_0669 →	ferric siderophore receptor
RA	780,004	A→T	7.6%	V156E (GTG→GAG)	PP_0670 ←	bile acid/Na+ symporter family transporter
RA	784,240	G→A	8.0%	G562G (GGC→GGT)	PP_0672 ←	sensory box protein
RA	788,581	C→A	8.5%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	8.0%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	8.4%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	8.3%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,596	T→C	9.0%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	790,154	A→T	10.4%	intergenic (+42/+18)	gdhA → / ← PP_0676	NADP‑dependent glutamate dehydrogenase/transcription elongation factor
RA	798,662	C→A	8.8%	intergenic (+17/+10)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	805,137	G→T	5.9%	S731S (TCC→TCA) ‡	PP_0693 ←	hypothetical protein
RA	805,138	G→C	5.1%	S731C (TCC→TGC) ‡	PP_0693 ←	hypothetical protein
RA	805,139	A→C	5.1%	S731A (TCC→GCC) ‡	PP_0693 ←	hypothetical protein
RA	855,668	G→A	6.9%	P173P (CCG→CCA)	murI →	glutamate racemase
RA	855,669	C→G	6.8%	L174V (CTA→GTA)	murI →	glutamate racemase
RA	855,672	C→G	6.9%	L175V (CTG→GTG) ‡	murI →	glutamate racemase
RA	855,673	T→C	6.8%	L175P (CTG→CCG) ‡	murI →	glutamate racemase
RA	857,577	C→T	16.9%	G416D (GGT→GAT)	phr ←	deoxyribodipyrimidine photolyase
RA	870,230	G→T	9.8%	R65S (CGC→AGC)	PP_5456 ←	hypothetical protein
RA	870,231	A→C	10.7%	A64A (GCT→GCG)	PP_5456 ←	hypothetical protein
RA	874,538	C→T	6.5%	V39V (GTC→GTT)	PP_0759 →	hypothetical protein
RA	874,539	G→C	7.6%	E40Q (GAA→CAA) ‡	PP_0759 →	hypothetical protein
RA	874,540	A→G	6.4%	E40G (GAA→GGA) ‡	PP_0759 →	hypothetical protein
RA	874,551	T→C	5.3%	Y44H (TAC→CAC)	PP_0759 →	hypothetical protein
RA	876,015	G→C	6.8%	noncoding (105/142 nt)	PP_mr65 ←	YybP‑YkoY
RA	879,675	A→G	25.0%	T402A (ACC→GCC)	PP_0763 →	medium‑chain‑fatty acid CoA ligase
RA	894,386	G→A	6.4%	D114N (GAC→AAC)	slyD →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	894,391	C→T	6.6%	G115G (GGC→GGT)	slyD →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	894,396	A→T	6.8%	D117V (GAC→GTC)	slyD →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	894,401	A→G	6.7%	T119A (ACC→GCC)	slyD →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	906,794	T→A	6.0%	L79Q (CTG→CAG)	PP_0790 →	inner membrane protein AmpE
RA	906,797	T→A	6.0%	L80Q (CTG→CAG)	PP_0790 →	inner membrane protein AmpE
RA	925,901	C→T	8.1%	W242* (TGG→TAG) ‡	PP_0805 ←	outer membrane efflux protein
RA	925,902	A→G	8.1%	W242R (TGG→CGG) ‡	PP_0805 ←	outer membrane efflux protein
RA	926,423	A→G	8.9%	L68P (CTG→CCG)	PP_0805 ←	outer membrane efflux protein
RA	935,949	C→T	31.7%	E3225K (GAA→AAA)	PP_0806 ←	surface adhesion protein
RA	955,149	A→G	13.2%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	13.8%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	14.1%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	12.5%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	956,069	G→T	9.3%	V237V (GTG→GTT)	alaC →	aminotransferase
RA	960,704	G→T	6.6%	P226Q (CCG→CAG)	selU ←	tRNA 2‑selenouridine synthase
RA	960,709	C→G	6.5%	T224T (ACG→ACC)	selU ←	tRNA 2‑selenouridine synthase
RA	960,714	A→C	6.7%	C223G (TGC→GGC)	selU ←	tRNA 2‑selenouridine synthase
RA	969,602	T→C	6.1%	V172A (GTT→GCT) ‡	queA →	S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase
RA	969,603	T→A	6.1%	V172V (GTT→GTA) ‡	queA →	S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase
RA	969,604	G→A	6.1%	A173T (GCC→ACC)	queA →	S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase
RA	971,677	C→T	8.0%	intergenic (+32/‑32)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,678	A→T	7.0%	intergenic (+33/‑31)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,679	A→G	7.3%	intergenic (+34/‑30)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	989,635	A→G	7.5%	Q53R (CAG→CGG)	PP_0855 →	hypothetical protein
RA	990,177	A→T	8.5%	S20C (AGC→TGC)	PP_0856 →	lipoprotein
RA	991,554	G→A	8.9%	G59D (GGT→GAT)	der →	GTPase Der
RA	991,557	T→C	8.7%	I60T (ATC→ACC)	der →	GTPase Der
RA	992,865	A→T	9.0%	intergenic (+23/‑129)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,866	A→T	7.7%	intergenic (+24/‑128)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,868	A→C	10.6%	intergenic (+26/‑126)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	994,947	T→A	11.3%	intergenic (+26/+99)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	994,948	T→A	9.9%	intergenic (+27/+98)	PP_0859 → / ← PP_0860	ketoglutaramate omega‑amidase/sulfite reductase flavoprotein subunit
RA	996,022	T→A	7.5%	Q525L (CAG→CTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,025	C→A	7.7%	W524L (TGG→TTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	1,001,099	A→G	6.7%	K26E (AAG→GAG)	PP_0863 →	hypothetical protein
RA	1,013,228	A→T	8.3%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	10.6%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	10.2%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	13.3%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	15.2%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	12.8%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	12.1%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	10.5%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,017,452	G→T	7.4%	S137* (TCA→TAA) ‡	PP_5461 ←	hypothetical protein
RA	1,017,453	A→C	7.4%	S137A (TCA→GCA) ‡	PP_5461 ←	hypothetical protein
RA	1,017,454	T→A	7.4%	S136S (TCA→TCT)	PP_5461 ←	hypothetical protein
RA	1,018,564	C→T	5.7%	R166Q (CGG→CAG) ‡	dppF ←	dipeptide ABC transporter ATP‑binding protein
RA	1,018,565	G→T	7.1%	R166R (CGG→AGG) ‡	dppF ←	dipeptide ABC transporter ATP‑binding protein
RA	1,021,167	C→T	7.4%	G274S (GGT→AGT)	dppB ←	dipeptide ABC transporter permease
RA	1,039,489	G→A	6.1%	intergenic (‑95/‑155)	PP_0897 ← / → PP_0899	class 1 fumarate hydratase/ferredoxin reductase
RA	1,040,592	A→T	7.8%	intergenic (+28/+14)	PP_0899 → / ← PP_0900	ferredoxin reductase/PAP2 family protein
RA	1,040,593	A→T	7.8%	intergenic (+29/+13)	PP_0899 → / ← PP_0900	ferredoxin reductase/PAP2 family protein
RA	1,041,393	G→A	9.1%	intergenic (‑59/‑125)	PP_0900 ← / → colR	PAP2 family protein/two‑component system response regulator
RA	1,057,557	A→G	9.3%	I172T (ATA→ACA)	PP_0914 ←	GGDEF domain‑containing protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,260	G→C	10.3%	intergenic (+60/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,263	G→C	10.0%	intergenic (+63/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,082,074	G→A	8.1%	A577T (GCC→ACC)	PP_0938 →	hypothetical protein
RA	1,092,598	C→A	8.7%	A77S (GCG→TCG)	ptsH ←	phosphocarrier protein HPr
RA	1,092,599	G→C	8.7%	D76E (GAC→GAG) ‡	ptsH ←	phosphocarrier protein HPr
RA	1,092,600	T→G	8.7%	D76A (GAC→GCC) ‡	ptsH ←	phosphocarrier protein HPr
RA	1,094,319	G→A	7.5%	P57S (CCC→TCC)	hpf ←	ribosome hibernation promoting factor
RA	1,111,300	T→C	10.0%	intergenic (+21/‑89)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,305	G→T	10.3%	intergenic (+26/‑84)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,308	C→G	11.4%	intergenic (+29/‑81)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,310	T→A	11.4%	intergenic (+31/‑79)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,312	C→G	11.4%	intergenic (+33/‑77)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,315	A→C	9.8%	intergenic (+36/‑74)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,111,320	G→A	9.5%	intergenic (+41/‑69)	PP_0970 → / → PP_0971	cyanate MFS transporter/hypothetical protein
RA	1,113,095	G→C	9.8%	A20A (GCC→GCG)	PP_0973 ←	nucleoid‑associated protein
RA	1,113,098	G→C	9.9%	P19P (CCC→CCG)	PP_0973 ←	nucleoid‑associated protein
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,192	A→T	8.1%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,135,615	C→A	9.4%	E454* (GAA→TAA)	PP_0997 ←	sigma‑54 dependent transcriptional regulator/sensory box protein
RA	1,145,440	G→A	7.8%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	7.8%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,146,822	A→T	6.7%	V414E (GTG→GAG)	PP_1006 ←	heme receptor
RA	1,146,825	C→A	6.5%	S413I (AGC→ATC)	PP_1006 ←	heme receptor
RA	1,146,828	T→G	6.5%	D412A (GAT→GCT)	PP_1006 ←	heme receptor
RA	1,146,831	A→T	6.8%	L411H (CTC→CAC)	PP_1006 ←	heme receptor
RA	1,157,230	C→T	8.9%	H240Y (CAC→TAC)	yihS →	aldose‑ketose isomerase
RA	1,183,450	T→C	6.7%	Y312C (TAC→TGC)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,183,456	A→T	6.8%	I310N (ATT→AAT)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,585	G→C	18.0%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,588	G→C	17.7%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,605	C→T	18.6%	intergenic (‑221/‑191)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,612	A→T	16.4%	intergenic (‑228/‑184)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,617	G→A	12.9%	intergenic (‑233/‑179)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,226,707	T→A	8.2%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	8.0%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,231,588	T→A	9.4%	E375D (GAA→GAT)	glpD ←	aerobic glycerol‑3‑phosphate dehydrogenase
RA	1,241,962:1	+T	8.5%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,241,967	Δ1 bp	8.8%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,245,330	G→C	6.3%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,245,334	G→C	6.7%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,245,338	G→C	6.5%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,251,957	A→G	6.9%	Y285H (TAC→CAC)	PP_1095 ←	electron transport complex protein
RA	1,261,542	T→A	7.6%	S365C (AGC→TGC)	PP_1104 ←	AotO‑related protein
RA	1,261,548	Δ1 bp	7.4%	coding (1087/1116 nt)	PP_1104 ←	AotO‑related protein
RA	1,277,323	C→A	8.3%	G16V (GGT→GTT) ‡	PP_1116 ←	resolvase family site‑specific recombinase
RA	1,277,324	C→G	8.3%	G16R (GGT→CGT) ‡	PP_1116 ←	resolvase family site‑specific recombinase
RA	1,277,325	T→G	8.3%	Q15H (CAA→CAC)	PP_1116 ←	resolvase family site‑specific recombinase
RA	1,294,413	C→T	9.8%	R11Q (CGG→CAG)	PP_1130 ←	hypothetical protein
RA	1,294,415	G→C	9.7%	C10W (TGC→TGG) ‡	PP_1130 ←	hypothetical protein
RA	1,294,417	A→G	10.0%	C10R (TGC→CGC) ‡	PP_1130 ←	hypothetical protein
RA	1,296,583	T→C	28.6%	intergenic (‑336/‑230)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,590	G→T	31.9%	intergenic (‑343/‑223)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,591	G→A	31.9%	intergenic (‑344/‑222)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,592	T→C	32.0%	intergenic (‑345/‑221)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,593	A→C	31.9%	intergenic (‑346/‑220)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,296,600	G→A	36.3%	intergenic (‑353/‑213)	nhaA‑I ← / → PP_1133	Na(+)/H(+) antiporter NhaA/transposase
RA	1,299,546	C→T	7.7%	G211D (GGC→GAC)	PP_1134 ←	hypothetical protein
RA	1,316,612	G→A	8.1%	A10A (GCG→GCA)	PP_1150 →	membrane protein
RA	1,322,861	A→C	9.3%	I332S (ATC→AGC)	PP_1155 ←	YaiC/YhcK/ArdA family protein
RA	1,322,868	G→T	9.5%	L330M (CTG→ATG)	PP_1155 ←	YaiC/YhcK/ArdA family protein
RA	1,324,257	A→G	25.3%	G258G (GGT→GGC)	yfdC ←	inner membrane protein
RA	1,327,121	C→T	47.5%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,330,501	G→A	6.7%	intergenic (+32/‑275)	PP_5SE → / → PP_1157	5S ribosomal RNA/acetolactate synthase
RA	1,342,252	A→T	6.8%	intergenic (‑36/+19)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,342,253	A→G	6.8%	intergenic (‑37/+18)	PP_1166 ← / ← PP_1167	DMT superfamily permease/TRAP dicarboxylate transporter subunit DctM
RA	1,356,405	G→C	9.5%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,356,633	A→T	5.5%	N170I (AAC→ATC)	PP_1181 →	two‑component system response regulator
RA	1,361,428	T→C	8.3%	H164H (CAT→CAC)	phoP →	two‑component system DNA‑binding transcriptional regulator
RA	1,368,197	G→T	6.2%	intergenic (+26/‑157)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,199	G→C	6.0%	intergenic (+28/‑155)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,201	A→C	6.3%	intergenic (+30/‑153)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,202	C→T	6.0%	intergenic (+31/‑152)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,389,946	C→G	7.8%	A23G (GCC→GGC)	PP_1212 →	hypothetical protein
RA	1,389,951	C→G	7.8%	P25A (CCG→GCG)	PP_1212 →	hypothetical protein
RA	1,392,927	C→G	11.9%	intergenic (+97/‑89)	PP_1214 → / → ruvC	transcriptional regulator/crossover junction endodeoxyribonuclease RuvC
RA	1,414,587	G→C	7.5%	intergenic (‑119/‑141)	PP_1236 ← / → dapA‑I	glycine cleavage system transcriptional repressor/4‑hydroxy‑tetrahydrodipicolinate synthase
RA	1,417,328	Δ1 bp	13.0%	coding (576/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,417,332:1	+A	13.0%	coding (580/759 nt)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,418,011	A→C	6.0%	K157T (AAG→ACG) ‡	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,418,012	G→C	6.0%	K157N (AAG→AAC) ‡	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,418,013	G→T	6.0%	V158F (GTC→TTC)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,422,516	C→T	7.4%	A366V (GCG→GTG)	PP_1246 →	hypothetical protein
RA	1,428,975	A→G	15.4%	Y359C (TAC→TGC) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,976	C→G	15.8%	Y359* (TAC→TAG) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,977	C→G	15.8%	P360A (CCA→GCA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,978	C→T	15.8%	P360L (CCA→CTA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,433,029	T→A	11.3%	intergenic (+17/+107)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,433,030	T→A	11.1%	intergenic (+18/+106)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,433,031	T→A	11.1%	intergenic (+19/+105)	xenA → / ← PP_1255	protein XenA/cis‑4‑hydroxy‑D‑proline oxidase
RA	1,436,436	T→C	6.6%	T210A (ACC→GCC)	PP_1257 ←	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
RA	1,444,198	A→G	6.5%	intergenic (‑13/‑179)	PP_1262 ← / → PP_1263	LysR family transcriptional regulator/fusaric acid resistance protein
RA	1,452,860	T→C	6.6%	L341P (CTG→CCG)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,452,862	A→T	6.4%	T342S (ACG→TCG)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,453,178	A→G	6.6%	H447R (CAT→CGT)	PP_1271 →	putative Multidrug efflux MFS transporter
RA	1,457,146	G→A	6.2%	Y111Y (TAC→TAT)	PP_1275 ←	hypothetical protein
RA	1,457,149	T→C	6.8%	R110R (CGA→CGG)	PP_1275 ←	hypothetical protein
RA	1,471,553	G→C	5.5%	P425R (CCG→CGG)	alg8 ←	glycosyltransferase Alg8
RA	1,477,214	C→T	7.8%	intergenic (+149/‑133)	PP_1290 → / → PP_1291	polysaccharide deacetylase family protein/PhoH family protein
RA	1,481,515	T→C	10.6%	S75G (AGC→GGC)	rhlB ←	ATP‑dependent RNA helicase RhlB
RA	1,481,516	G→A	10.7%	A74A (GCC→GCT)	rhlB ←	ATP‑dependent RNA helicase RhlB
RA	1,491,034	Δ1 bp	9.7%	coding (697/1902 nt)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,491,038:1	+C	9.8%	coding (701/1902 nt)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,504,030	T→G	8.2%	R130R (CGT→CGG)	rpsI →	30S ribosomal protein S9
RA	1,504,033	A→T	8.2%	*131Y (TAA→TAT)	rpsI →	30S ribosomal protein S9
RA	1,504,036	C→A	8.3%	intergenic (+3/‑260)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,923	A→G	12.2%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	12.5%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	11.2%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,517,283	T→G	8.0%	V158G (GTG→GGG)	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,526,725	A→C	7.9%	Q304H (CAA→CAC)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,526,727	T→A	6.7%	L305Q (CTG→CAG)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,526,729	G→T	6.9%	V306L (GTG→TTG)	ddlB →	D‑alanine‑‑D‑alanine ligase B
RA	1,527,212	C→T	9.3%	A146V (GCA→GTA)	ftsQ →	cell division protein FtsQ
RA	1,533,133	C→G	6.8%	H382D (CAC→GAC) ‡	secA →	protein translocase subunit SecA
RA	1,533,135	C→G	6.4%	H382Q (CAC→CAG) ‡	secA →	protein translocase subunit SecA
RA	1,535,859	G→T	8.3%	G290C (GGC→TGC)	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,535,862	A→C	7.7%	N291H (AAC→CAC)	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,539,680	G→A	6.6%	P297L (CCC→CTC)	PP_1350 ←	two‑component system sensor histidine kinase/response regulator
RA	1,550,541	T→A	6.3%	L314Q (CTG→CAG)	groL →	chaperonin GroEL
RA	1,550,544	A→T	6.5%	E315V (GAG→GTG)	groL →	chaperonin GroEL
RA	1,550,547	A→T	6.6%	H316L (CAC→CTC)	groL →	chaperonin GroEL
RA	1,550,550	T→A	6.2%	L317Q (CTG→CAG)	groL →	chaperonin GroEL
RA	1,555,388	A→C	7.4%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	8.5%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	7.6%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,556,982	T→G	12.2%	intergenic (+34/‑59)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,556,983	G→C	14.4%	intergenic (+35/‑58)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,556,984	C→A	12.6%	intergenic (+36/‑57)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,562,169	T→G	7.6%	intergenic (‑79/‑90)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,562,170	C→G	7.6%	intergenic (‑80/‑89)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,562,171	C→A	8.6%	intergenic (‑81/‑88)	pctA ← / → PP_1372	methyl‑accepting chemotaxis protein PctA/hypothetical protein
RA	1,563,123	C→T	88.0%	Q289* (CAA→TAA)	PP_1372 →	hypothetical protein
RA	1,570,243	A→G	5.8%	I352V (ATT→GTT)	pcaF‑I →	beta‑ketoadipyl‑CoA thiolase
RA	1,572,889	C→A	7.3%	A337A (GCC→GCA)	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,891	T→G	6.9%	L338R (CTG→CGG)	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,577,101	G→A	6.9%	Q383* (CAG→TAG)	ttgC ←	efflux pump outer membrane protein TtgC
RA	1,594,061	T→C	7.0%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,066	G→T	6.9%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,067	C→G	7.1%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,068	A→C	7.2%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,073	G→A	8.7%	intergenic (‑271/+30)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,631,093	T→C	8.5%	intergenic (+27/‑154)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,094	T→G	8.3%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,095	C→A	8.6%	intergenic (+29/‑152)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,096	G→A	8.8%	intergenic (+30/‑151)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,642,264	G→A	6.8%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,271	G→C	12.7%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	12.3%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	12.4%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	12.5%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	12.5%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,292	T→C	9.4%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,301	G→A	6.3%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,668,719	G→C	8.5%	D55H (GAC→CAC)	rpsP →	30S ribosomal protein S16
RA	1,668,724	C→G	8.8%	G56G (GGC→GGG)	rpsP →	30S ribosomal protein S16
RA	1,691,772	T→C	6.3%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	6.3%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	7.9%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	8.8%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	6.7%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,797	G→A	6.7%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,790	C→A	7.3%	R87S (CGC→AGC) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,693,792	C→G	7.7%	R87R (CGC→CGG) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,695,020	C→G	6.0%	A329G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,023	G→A	5.9%	R330Q (CGG→CAG)	wspC →	biofilm formation methyltransferase WspC
RA	1,703,248	A→G	10.4%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	12.7%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	13.5%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,706,336	T→G	5.7%	M134R (ATG→AGG)	PP_1500 →	lipoprotein
RA	1,706,338	G→C	5.6%	A135P (GCC→CCC) ‡	PP_1500 →	lipoprotein
RA	1,706,340	C→A	5.5%	A135A (GCC→GCA) ‡	PP_1500 →	lipoprotein
RA	1,709,445	A→T	6.5%	T22S (ACC→TCC) ‡	ppc →	phosphoenolpyruvate carboxylase
RA	1,709,446	C→G	6.5%	T22S (ACC→AGC) ‡	ppc →	phosphoenolpyruvate carboxylase
RA	1,709,447	C→G	6.5%	T22T (ACC→ACG) ‡	ppc →	phosphoenolpyruvate carboxylase
RA	1,712,951	T→A	13.4%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	11.7%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,732,525	A→T	10.2%	Y449N (TAC→AAC)	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,750,733	C→G	8.1%	A31G (GCC→GGC)	PP_1551 →	replication protein O
RA	1,761,260	C→T	6.1%	G136G (GGC→GGT)	PP_1567 →	capsid protein
RA	1,761,261	A→G	6.1%	T137A (ACC→GCC)	PP_1567 →	capsid protein
RA	1,777,524	C→G	7.6%	intergenic (+258/+34)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,777,525	C→G	7.6%	intergenic (+259/+33)	PP_5476 → / ← PP_1585	hypothetical protein/antidote protein
RA	1,787,066	C→G	13.3%	intergenic (+33/‑149)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,070	T→G	12.5%	intergenic (+37/‑145)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,071	C→T	12.4%	intergenic (+38/‑144)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,072	A→G	12.7%	intergenic (+39/‑143)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,073	C→A	12.9%	intergenic (+40/‑142)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,077	C→G	13.3%	intergenic (+44/‑138)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,819,789	Δ1 bp	7.0%	intergenic (+26/‑449)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,819,791	T→A	7.3%	intergenic (+28/‑447)	rpoS → / → PP_1624	RNA polymerase sigma S factor/group II intron‑encoding maturase
RA	1,824,541	A→G	86.7%	L238P (CTG→CCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,825,091	G→C	7.8%	R55G (CGC→GGC)	mutS ←	DNA mismatch repair protein MutS
RA	1,825,092	G→C	7.7%	A54A (GCC→GCG)	mutS ←	DNA mismatch repair protein MutS
RA	1,835,645	T→G	9.2%	intergenic (‑87/+45)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,646	T→C	9.2%	intergenic (‑88/+44)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,647	G→A	10.0%	intergenic (‑89/+43)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,648	C→A	10.2%	intergenic (‑90/+42)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,835,656	C→T	10.0%	intergenic (‑98/+34)	PP_1639 ← / ← yohC	SprT family protein/inner membrane protein
RA	1,836,055	C→T	8.0%	A79T (GCC→ACC)	yohC ←	inner membrane protein
RA	1,843,542	G→A	7.2%	R418C (CGC→TGC)	gacS ←	sensor protein GacS
RA	1,848,468	T→A	5.8%	intergenic (+223/‑92)	PP_1653 → / → cysM	transposase/cysteine synthase B
RA	1,848,469	G→C	5.8%	intergenic (+224/‑91)	PP_1653 → / → cysM	transposase/cysteine synthase B
RA	1,848,470	T→A	5.8%	intergenic (+225/‑90)	PP_1653 → / → cysM	transposase/cysteine synthase B
RA	1,853,215	T→C	7.2%	intergenic (+60/‑64)	relA → / → mazG	ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase
RA	1,859,527	A→C	6.7%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,529	T→A	6.3%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,867,584	C→A	6.3%	T102T (ACC→ACA)	cobO →	bifunctional cob(I)alamin adenolsyltransferase/cobinamide ATP‑dependent adenolsyltransferase
RA	1,870,833	T→C	6.5%	V36A (GTC→GCC)	cobC →	adenosylcobinamide‑phosphate synthase subunit beta
RA	1,874,075	G→A	6.0%	R129Q (CGG→CAG)	cobU →	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
RA	1,883,834	G→A	6.5%	intergenic (‑167/‑784)	PP_1691 ← / → PP_1692	hypothetical protein/hypothetical protein
RA	1,887,064	T→C	6.7%	Q1070R (CAG→CGG)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,899,347	C→T	6.6%	intergenic (+417/‑103)	PP_t18 → / → PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
RA	1,899,807	A→T	7.8%	K120* (AAG→TAG)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,925,860	C→T	7.4%	A336T (GCC→ACC)	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,926,513	T→G	5.3%	D118A (GAC→GCC)	PP_1726 ←	ABC transporter substrate‑binding protein
RA	1,928,996	G→A	5.2%	R366C (CGC→TGC)	PP_1728 ←	membrane protein
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,935,861	A→G	7.3%	T55A (ACC→GCC)	PP_1736 →	hypothetical protein
RA	1,941,177:1	+C	100%	coding (100/1578 nt)	PP_1740 ←	beta (1‑6) glucans synthase
RA	1,973,871	A→T	11.8%	intergenic (+28/‑120)	gyrA → / → serC	DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase
RA	1,973,872	A→T	9.4%	intergenic (+29/‑119)	gyrA → / → serC	DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase
RA	1,976,785	T→G	8.0%	F150C (TTC→TGC)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,976,789	C→G	8.3%	R151R (CGC→CGG)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,976,793	C→A	8.6%	H153N (CAC→AAC)	PP_1770 →	3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	1,978,708	C→G	5.9%	F45L (TTC→TTG)	cmk →	cytidylate kinase
RA	1,981,092	T→G	8.6%	intergenic (+31/‑269)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,981,093	C→A	8.6%	intergenic (+32/‑268)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,991,884	T→C	12.9%	L1045P (CTC→CCC)	PP_1780 →	mannosyltransferase
RA	1,993,602	G→T	8.1%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	8.3%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	8.2%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,001,813	A→G	7.2%	Q585R (CAG→CGG)	PP_1786 →	glycosyl transferase
RA	2,006,336	T→A	8.3%	T112S (ACT→TCT)	PP_1789 ←	haloacid dehalogenase‑like family hydrolase
RA	2,015,846	A→G	9.1%	Y183H (TAT→CAT)	PP_1795 ←	hypothetical protein
RA	2,017,246	Δ1 bp	100%	intergenic (‑854/‑1480)	PP_1795 ← / → PP_1797	hypothetical protein/HlyD family secretion protein
RA	2,022,441	C→T	9.7%	Y180Y (TAC→TAT)	gmd →	GDP‑mannose 4,6‑dehydratase
RA	2,037,575	A→T	8.7%	intergenic (+169/+30)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,576	T→A	9.1%	intergenic (+170/+29)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,577	A→T	8.8%	intergenic (+171/+28)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,063,201	G→A	12.5%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	12.5%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	13.7%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,212	T→C	11.4%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,220	G→T	13.2%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,084,112	T→A	7.1%	intergenic (+16/+13)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,113	T→A	7.3%	intergenic (+17/+12)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,092,380	G→A	7.3%	intergenic (+26/+65)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,382	T→C	7.2%	intergenic (+28/+63)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,385	G→A	7.3%	intergenic (+31/+60)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,387	T→C	7.3%	intergenic (+33/+58)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,094,034	A→C	5.8%	intergenic (+70/+28)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,094,035	A→G	5.8%	intergenic (+71/+27)	tpm → / ← htpX	thiopurine S‑methyltransferase/protease HtpX
RA	2,099,701	G→A	5.5%	N63N (AAC→AAT)	PP_1875 ←	two‑component system sensor histidine kinase/response regulator
RA	2,104,902	G→C	7.3%	intergenic (‑19/+22)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,104,903	C→A	7.3%	intergenic (‑20/+21)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,104,906	T→G	7.1%	intergenic (‑23/+18)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,104,907	G→C	7.5%	intergenic (‑24/+17)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,112,732	C→A	6.0%	P518P (CCG→CCT) ‡	PP_1882 ←	membrane protein
RA	2,112,733	G→C	5.3%	P518R (CCG→CGG) ‡	PP_1882 ←	membrane protein
RA	2,112,738	G→C	5.2%	H516Q (CAC→CAG) ‡	PP_1882 ←	membrane protein
RA	2,112,739	T→G	5.0%	H516P (CAC→CCC) ‡	PP_1882 ←	membrane protein
RA	2,128,412	C→T	7.2%	N1261N (AAC→AAT)	PP_1887 →	hypothetical protein
RA	2,139,637	C→A	9.8%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,139,892	G→A	6.4%	V77V (GTC→GTT)	PP_5481 ←	hypothetical protein
RA	2,139,896	G→T	6.3%	P76Q (CCG→CAG)	PP_5481 ←	hypothetical protein
RA	2,150,833	G→C	8.6%	noncoding (66/373 nt)	PP_mr28 ←	rne‑II regulatory region
RA	2,150,834	T→A	7.3%	noncoding (65/373 nt)	PP_mr28 ←	rne‑II regulatory region
RA	2,150,836	A→T	7.3%	noncoding (63/373 nt)	PP_mr28 ←	rne‑II regulatory region
RA	2,150,838	T→A	7.1%	noncoding (61/373 nt)	PP_mr28 ←	rne‑II regulatory region
RA	2,150,839	G→C	7.2%	noncoding (60/373 nt)	PP_mr28 ←	rne‑II regulatory region
RA	2,154,350	T→A	6.7%	E141V (GAA→GTA)	PP_1909 ←	septum formation protein
RA	2,155,087	A→G	7.8%	S86G (AGC→GGC)	PP_1910 →	hypothetical protein
RA	2,155,091	A→T	7.8%	E87V (GAA→GTA)	PP_1910 →	hypothetical protein
RA	2,155,100	A→T	7.7%	Y90F (TAC→TTC)	PP_1910 →	hypothetical protein
RA	2,155,104	C→T	7.8%	A91A (GCC→GCT)	PP_1910 →	hypothetical protein
RA	2,156,030	T→A	10.0%	Y158N (TAT→AAT)	plsX →	phosphate acyltransferase
RA	2,173,778	A→C	11.7%	A83A (GCT→GCG) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,173,779	G→T	12.2%	A83D (GCT→GAT) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,178,145	C→T	6.9%	I127I (ATC→ATT)	PP_1931 →	hypothetical protein
RA	2,178,524	G→A	7.5%	A254T (GCC→ACC)	PP_1931 →	hypothetical protein
RA	2,224,830	C→T	7.1%	E601E (GAG→GAA) ‡	PP_1963 ←	hypothetical protein
RA	2,224,832	C→G	6.7%	E601Q (GAG→CAG) ‡	PP_1963 ←	hypothetical protein
RA	2,224,834	A→G	7.1%	I600T (ATT→ACT)	PP_1963 ←	hypothetical protein
RA	2,236,973	T→G	8.7%	intergenic (+68/+60)	uvrB → / ← PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
RA	2,236,975	C→A	8.9%	intergenic (+70/+58)	uvrB → / ← PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
RA	2,237,678	C→G	16.3%	A302A (GCG→GCC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,237,679	G→C	16.3%	A302G (GCG→GGG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,237,680	C→G	16.3%	A302P (GCG→CCG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,242,037	G→A	6.7%	intergenic (+35/‑27)	PP_t28 → / → PP_t29	tRNA‑Glu/tRNA‑Ala
RA	2,242,040	G→A	6.7%	intergenic (+38/‑24)	PP_t28 → / → PP_t29	tRNA‑Glu/tRNA‑Ala
RA	2,242,043	T→A	7.3%	intergenic (+41/‑21)	PP_t28 → / → PP_t29	tRNA‑Glu/tRNA‑Ala
RA	2,242,397	C→T	6.0%	intergenic (+140/‑31)	PP_t30 → / → PP_1978	tRNA‑Glu/TetR family transcriptional regulator
RA	2,246,241	C→T	7.6%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,252,647	T→A	5.2%	L183Q (CTG→CAG)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,252,650	A→C	5.3%	D184A (GAC→GCC)	leuD →	3‑isopropylmalate dehydratase small subunit
RA	2,256,198	G→C	8.9%	intergenic (+258/‑446)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,256,199	G→C	8.5%	intergenic (+259/‑445)	asd → / → PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
RA	2,258,531	C→G	6.7%	A65A (GCC→GCG)	asd →	aspartate‑semialdehyde dehydrogenase
RA	2,267,303	C→A	16.1%	T76T (ACC→ACA)	cvpA →	colicin V production membrane protein
RA	2,282,737	T→G	7.2%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
JC	2,282,749	Δ66 bp	6.7%	intergenic (‑141/+23)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,297,143	G→C	5.4%	D993E (GAC→GAG) ‡	sbcC ←	exonuclease subunit SbcC
RA	2,297,144	T→A	5.7%	D993V (GAC→GTC) ‡	sbcC ←	exonuclease subunit SbcC
RA	2,300,401	T→G	7.7%	E319A (GAG→GCG)	sbcD ←	exonuclease subunit SbcD
RA	2,300,408	A→C	8.1%	W317G (TGG→GGG)	sbcD ←	exonuclease subunit SbcD
RA	2,300,409	G→T	8.2%	P316P (CCC→CCA)	sbcD ←	exonuclease subunit SbcD
RA	2,300,416	C→A	8.6%	R314L (CGC→CTC)	sbcD ←	exonuclease subunit SbcD
RA	2,301,426	T→A	5.3%	intergenic (‑70/‑261)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,427	G→C	5.7%	intergenic (‑71/‑260)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,428	T→A	6.8%	intergenic (‑72/‑259)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,312,841	C→A	8.2%	R5S (AGG→AGT) ‡	PP_2034 ←	membrane protein
RA	2,312,842	C→G	6.9%	R5T (AGG→ACG) ‡	PP_2034 ←	membrane protein
RA	2,312,843	T→G	6.1%	R5R (AGG→CGG) ‡	PP_2034 ←	membrane protein
RA	2,316,037	A→T	6.4%	intergenic (‑86/‑160)	PP_2037 ← / → PP_2038	aldolase/long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,316,038	A→T	5.9%	intergenic (‑87/‑159)	PP_2037 ← / → PP_2038	aldolase/long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,316,039	A→T	5.9%	intergenic (‑88/‑158)	PP_2037 ← / → PP_2038	aldolase/long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,336,497	C→T	8.7%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,498	A→T	8.9%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	8.8%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,351,974	T→C	5.9%	I431V (ATT→GTT)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,977	G→T	5.9%	R430S (CGC→AGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,978	C→T	5.9%	E429E (GAG→GAA)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,983	T→A	5.7%	S428C (AGT→TGT)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,988	A→G	5.2%	F426S (TTT→TCT)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,992	G→A	5.1%	R425C (CGC→TGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,367,410	A→C	8.5%	Q76H (CAA→CAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,367,411	G→T	8.3%	V77L (GTG→TTG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,284	A→C	6.9%	K368Q (AAG→CAG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,287	G→T	7.1%	E369* (GAA→TAA) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,288	A→T	8.1%	E369V (GAA→GTA) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,289	A→C	7.7%	E369D (GAA→GAC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,292	G→T	7.4%	L370L (CTG→CTT)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,372,081	G→T	6.1%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,082	T→C	5.2%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	5.1%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	5.6%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,373,985	T→C	41.7%	R272R (CGT→CGC)	ppsA →	phosphoenolpyruvate synthetase
RA	2,380,747	T→C	6.2%	A137A (GCT→GCC)	oprF →	porin F
RA	2,380,748	G→A	6.2%	G138S (GGC→AGC)	oprF →	porin F
RA	2,381,402	T→G	7.3%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,403	C→A	6.7%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,386,384	A→C	6.0%	R240R (CGT→CGG)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,386,387	G→T	5.7%	A239A (GCC→GCA)	PP_2094 ←	nitrate‑binding protein NasS
RA	2,388,667	T→G	5.8%	noncoding (101/130 nt)	PP_mr31 ←	rmf regulatory region
RA	2,388,668	C→G	6.1%	noncoding (100/130 nt)	PP_mr31 ←	rmf regulatory region
RA	2,388,669	C→A	5.5%	noncoding (99/130 nt)	PP_mr31 ←	rmf regulatory region
RA	2,395,583	G→C	5.8%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,585	A→T	5.4%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,587	G→C	6.5%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,401,195	G→C	5.1%	P232A (CCG→GCG)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,196	G→T	5.1%	H231Q (CAC→CAA)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,206	C→A	5.7%	W228L (TGG→TTG) ‡	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,207	A→C	6.3%	W228G (TGG→GGG) ‡	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,208	G→C	6.1%	R227R (CGC→CGG)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,414,773	T→G	6.1%	intergenic (+315/‑30)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,414,775	C→A	7.0%	intergenic (+317/‑28)	PP_2114 → / → PP_2115	transposase/hypothetical protein
RA	2,420,598	Δ1 bp	8.6%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	8.4%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,421,958	G→A	5.1%	P82P (CCG→CCA)	moeA →	molybdenum::molybdopterin ligase
RA	2,440,461:1	+A	6.6%	intergenic (+26/‑50)	pcaF‑II → / → PP_2138	beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein
RA	2,440,466	Δ1 bp	6.8%	intergenic (+31/‑45)	pcaF‑II → / → PP_2138	beta‑ketoadipyl‑CoA thiolase subunit beta/hypothetical protein
RA	2,444,034	A→G	10.0%	K184E (AAA→GAA)	PP_2140 →	hypothetical protein
RA	2,444,415	A→C	5.3%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	5.4%	L157R (CTC→CGC)	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	6.6%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,455,254	G→T	5.6%	intergenic (‑136/‑32)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,455,255	T→A	5.0%	intergenic (‑137/‑31)	mfd ← / → gapB	transcription‑repair coupling factor/glyceraldehyde‑3‑phosphate dehydrogenase
RA	2,456,991	T→A	8.0%	L21Q (CTG→CAG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,456,994	A→C	8.0%	E22A (GAG→GCG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,456,997	G→T	7.4%	R23L (CGC→CTC)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,457,000	T→A	6.1%	L24Q (CTG→CAG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,470,613	Δ1 bp	7.0%	coding (178/1182 nt)	PP_2165 →	two‑component system response regulator
RA	2,474,160	G→A	7.4%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,162	A→G	7.6%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,478,840	G→A	5.1%	intergenic (+93/+352)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,845	G→C	5.5%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,502,985	A→T	5.1%	S94C (AGC→TGC)	speB →	agmatinase
RA	2,508,900	G→C	5.1%	S72W (TCG→TGG)	PP_2203 ←	hypothetical protein
RA	2,509,062	G→C	8.4%	A18G (GCC→GGC)	PP_2203 ←	hypothetical protein
RA	2,511,675	G→A	5.2%	T19M (ACG→ATG) ‡	copA‑I ←	copper resistance protein A
RA	2,511,676	T→C	5.3%	T19A (ACG→GCG) ‡	copA‑I ←	copper resistance protein A
RA	2,529,028	G→C	7.1%	intergenic (+155/‑252)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,529,029	G→C	7.1%	intergenic (+156/‑251)	PP_2217 → / → PP_2218	enoyl‑CoA hydratase/transposase
RA	2,542,684	C→T	73.5%	S48S (AGC→AGT)	PP_2235 →	hypothetical protein
RA	2,567,081	Δ1 bp	7.7%	coding (847/879 nt)	PP_2250 ←	LysR family transcriptional regulator
RA	2,567,085:1	+C	7.6%	coding (843/879 nt)	PP_2250 ←	LysR family transcriptional regulator
RA	2,571,850	A→T	8.0%	L196Q (CTG→CAG)	dctA‑III ←	C4‑dicarboxylate transport protein
RA	2,571,856	Δ1 bp	8.0%	coding (581/1311 nt)	dctA‑III ←	C4‑dicarboxylate transport protein
RA	2,584,610	G→T	7.1%	intergenic (+97/+30)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,611	C→T	7.1%	intergenic (+98/+29)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,612	A→G	7.0%	intergenic (+99/+28)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,584,613	A→C	7.1%	intergenic (+100/+27)	PP_2264 → / ← folD‑II	sugar ABC transporter substrate‑binding protein/bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
RA	2,597,477	C→T	9.8%	P4S (CCC→TCC)	PP_2275 →	hypothetical protein
RA	2,601,181	A→G	14.8%	K220E (AAG→GAG)	PP_2279 →	head‑to‑tail joining protein
RA	2,612,398	A→T	6.7%	E446V (GAG→GTG)	PP_2287 →	internal core protein
RA	2,612,401	A→C	6.6%	E447A (GAG→GCG) ‡	PP_2287 →	internal core protein
RA	2,612,402	G→T	6.7%	E447D (GAG→GAT) ‡	PP_2287 →	internal core protein
RA	2,619,403	G→A	8.0%	intergenic (‑91/‑58)	PP_2292 ← / → PP_2293	hypothetical protein/DNA maturase B
RA	2,630,161	C→G	5.2%	A373G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,163	G→C	5.2%	V374L (GTT→CTT)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,176	C→G	5.3%	A378G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,180	G→T	7.3%	L379L (CTG→CTT)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,660,183	G→A	7.8%	F51F (TTC→TTT)	PP_2331 ←	membrane protein
RA	2,669,973	A→T	12.7%	V782E (GTG→GAG)	acnB ←	aconitate hydratase B
RA	2,669,975	G→A	7.0%	R781R (CGC→CGT)	acnB ←	aconitate hydratase B
RA	2,669,976:1	+T	12.3%	coding (2342/2610 nt)	acnB ←	aconitate hydratase B
RA	2,671,109	T→A	8.1%	P403P (CCA→CCT)	acnB ←	aconitate hydratase B
RA	2,671,115	C→T	8.3%	V401V (GTG→GTA) ‡	acnB ←	aconitate hydratase B
RA	2,671,116	A→G	8.2%	V401A (GTG→GCG) ‡	acnB ←	aconitate hydratase B
RA	2,671,122	T→A	8.3%	Q399L (CAG→CTG)	acnB ←	aconitate hydratase B
RA	2,682,906:1	+C	9.4%	coding (1472/1890 nt)	prpE →	propionyl‑CoA synthetase
RA	2,682,909	G→T	10.4%	G492V (GGG→GTG)	prpE →	propionyl‑CoA synthetase
RA	2,682,914	Δ1 bp	8.9%	coding (1480/1890 nt)	prpE →	propionyl‑CoA synthetase
RA	2,682,917	G→C	9.3%	D495H (GAT→CAT)	prpE →	propionyl‑CoA synthetase
RA	2,685,125	A→T	6.2%	intergenic (‑243/‑17)	PP_5520 ← / → PP_t41	hypothetical protein/tRNA‑Gln
RA	2,685,126	A→T	6.2%	intergenic (‑244/‑16)	PP_5520 ← / → PP_t41	hypothetical protein/tRNA‑Gln
RA	2,707,010	A→T	84.8%	A1389A (GCA→GCT)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,707,047	G→T	9.0%	intergenic (+16/+31)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,048	A→C	10.0%	intergenic (+17/+30)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,049	G→T	9.8%	intergenic (+18/+29)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,707,050	A→C	9.9%	intergenic (+19/+28)	PP_2369 → / ← PP_2370	leucine‑rich repeat‑containing protein/hypothetical protein
RA	2,710,330	G→T	8.5%	V303V (GTG→GTT)	PP_2372 →	sugar‑binding protein
RA	2,710,335	A→C	8.2%	E305A (GAA→GCA)	PP_2372 →	sugar‑binding protein
RA	2,712,178	C→T	6.1%	A976T (GCC→ACC)	metH ←	cobalamin‑dependent methionine synthase
RA	2,724,715	A→C	7.7%	intergenic (‑124/+24)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,724,716	A→T	7.9%	intergenic (‑125/+23)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,724,717	G→T	8.5%	intergenic (‑126/+22)	azlC ← / ← PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
RA	2,730,895	C→G	6.2%	P78A (CCG→GCG)	polB →	DNA polymerase II
RA	2,743,768	T→C	7.1%	Y45H (TAT→CAT)	PP_2398 →	hypothetical protein
RA	2,746,461	G→A	8.1%	intergenic (‑149/+21)	PP_2401 ← / ← PP_2402	membrane protein/sensor histidine kinase
RA	2,753,883	A→C	7.8%	E70A (GAG→GCG)	czcA‑II →	cation efflux system protein
RA	2,753,885	A→G	7.8%	T71A (ACC→GCC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,886	C→T	7.8%	T71I (ACC→ATC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,888	G→T	7.9%	A72S (GCG→TCG)	czcA‑II →	cation efflux system protein
RA	2,762,976	T→G	7.1%	Q312P (CAG→CCG)	PP_2417 ←	iron ABC transporter permease
RA	2,762,978	G→C	7.3%	G311G (GGC→GGG) ‡	PP_2417 ←	iron ABC transporter permease
RA	2,762,980	C→A	7.2%	G311C (GGC→TGC) ‡	PP_2417 ←	iron ABC transporter permease
RA	2,770,214	T→C	6.8%	intergenic (‑80/+29)	PP_2422 ← / ← lpxOA	hypothetical protein/Fe(2+)/alpha‑ketoglutarate‑dependent dioxygenase
RA	2,770,218	Δ1 bp	6.9%	intergenic (‑84/+25)	PP_2422 ← / ← lpxOA	hypothetical protein/Fe(2+)/alpha‑ketoglutarate‑dependent dioxygenase
RA	2,770,224:1	+A	6.8%	intergenic (‑90/+19)	PP_2422 ← / ← lpxOA	hypothetical protein/Fe(2+)/alpha‑ketoglutarate‑dependent dioxygenase
RA	2,770,228	G→A	6.9%	intergenic (‑94/+15)	PP_2422 ← / ← lpxOA	hypothetical protein/Fe(2+)/alpha‑ketoglutarate‑dependent dioxygenase
RA	2,787,623	G→A	12.2%	intergenic (+70/‑55)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,629	C→G	9.4%	intergenic (+76/‑49)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,630	C→G	9.4%	intergenic (+77/‑48)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,636	T→C	11.3%	intergenic (+83/‑42)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,791,721	G→A	6.5%	S273L (TCG→TTG)	PP_2444 ←	LysR family transcriptional regulator
RA	2,794,290	T→G	7.4%	C45G (TGC→GGC) ‡	PP_2447 →	hypothetical protein
RA	2,794,291	G→C	7.8%	C45S (TGC→TCC) ‡	PP_2447 →	hypothetical protein
RA	2,794,292	C→A	7.8%	C45* (TGC→TGA) ‡	PP_2447 →	hypothetical protein
RA	2,799,171	A→G	7.0%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,177	C→T	6.0%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	6.2%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,186	C→T	6.0%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,808,544	A→C	9.9%	noncoding (416/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,545	C→T	10.2%	noncoding (415/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,546	A→T	10.0%	noncoding (414/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,547	A→G	10.3%	noncoding (413/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,548	G→T	10.4%	noncoding (412/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,813,478	C→A	7.7%	A221A (GCC→GCA)	pheS →	phenylalanine‑‑tRNA ligase subunit alpha
RA	2,820,598	G→C	9.1%	intergenic (+399/+113)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,820,599	A→G	9.1%	intergenic (+400/+112)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,824,259	T→A	12.7%	L112Q (CTG→CAG)	iorA‑I →	isoquinoline 1‑oxidoreductase subunit alpha
RA	2,824,517	G→T	6.0%	E44* (GAG→TAG) ‡	PP_2478 →	isoquinoline 1‑oxidoreductase subunit beta
RA	2,824,518	A→C	5.8%	E44A (GAG→GCG) ‡	PP_2478 →	isoquinoline 1‑oxidoreductase subunit beta
RA	2,827,387	C→G	6.4%	A267G (GCT→GGT)	PP_2479 →	cytochrome c family protein
RA	2,827,389	G→C	6.5%	D268H (GAC→CAC) ‡	PP_2479 →	cytochrome c family protein
RA	2,827,391	C→G	6.3%	D268E (GAC→GAG) ‡	PP_2479 →	cytochrome c family protein
RA	2,845,970	Δ1 bp	7.5%	coding (146/330 nt)	PP_2497 ←	hypothetical protein
RA	2,845,975	T→A	7.8%	A47A (GCA→GCT)	PP_2497 ←	hypothetical protein
RA	2,845,979:1	+T	8.0%	coding (137/330 nt)	PP_2497 ←	hypothetical protein
RA	2,852,397	T→A	6.4%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,595	A→C	8.5%	L246R (CTG→CGG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,597	G→C	9.1%	R245R (CGC→CGG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,853,344	A→G	78.8%	intergenic (‑13/‑305)	PP_2505 ← / → PP_2506	GAF domain/GGDEF domain‑containing protein/membrane protein
RA	2,858,693	G→A	100%	intergenic (‑49/‑77)	PP_2510 ← / → PP_2511	hypothetical protein/hypothetical protein
RA	2,863,829	T→G	10.8%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,884,812	C→G	9.5%	P93A (CCG→GCG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,884,813	C→G	9.5%	P93R (CCG→CGG) ‡	PP_2540 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,889,941	G→A	6.1%	A317T (GCT→ACT)	gabP‑II →	gamma‑aminobutyrate permease
RA	2,890,433	C→G	12.0%	E59D (GAG→GAC)	PP_2544 ←	hypothetical protein
RA	2,890,438	T→C	11.4%	R58G (AGG→GGG)	PP_2544 ←	hypothetical protein
RA	2,890,439	T→A	11.0%	P57P (CCA→CCT) ‡	PP_2544 ←	hypothetical protein
RA	2,890,440	G→A	11.0%	P57L (CCA→CTA) ‡	PP_2544 ←	hypothetical protein
RA	2,890,445	C→G	11.1%	G55G (GGG→GGC)	PP_2544 ←	hypothetical protein
RA	2,905,462	G→A	9.2%	A116V (GCC→GTC)	PP_2557 ←	sensory box protein
RA	2,905,465	G→T	9.1%	T115N (ACC→AAC)	PP_2557 ←	sensory box protein
RA	2,905,468	A→C	9.1%	V114G (GTT→GGT)	PP_2557 ←	sensory box protein
RA	2,907,717	T→C	6.5%	E326E (GAA→GAG)	hasE ←	secretion metalloprotease
RA	2,909,284	T→C	9.6%	Q385R (CAG→CGG) ‡	aprDA ←	alkaline protease secretion ABC transporter ATP‑binding protein
RA	2,909,285	G→A	8.1%	Q385* (CAG→TAG) ‡	aprDA ←	alkaline protease secretion ABC transporter ATP‑binding protein
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,925,403	A→T	12.9%	intergenic (‑151/+414)	PP_2563 ← / ← PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
RA	2,933,447	T→A	6.4%	I219F (ATC→TTC)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,933,449	T→C	6.4%	E218G (GAA→GGA)	PP_2566 ←	leucine‑rich repeat‑containing protein
RA	2,941,819	C→T	8.0%	Q127Q (CAG→CAA)	PP_2575 ←	hypothetical protein
RA	2,948,597	T→G	6.8%	D162A (GAC→GCC) ‡	PP_2582 ←	heme oxygenase
RA	2,948,598	C→A	6.4%	D162Y (GAC→TAC) ‡	PP_2582 ←	heme oxygenase
RA	2,951,334	G→C	10.7%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	10.4%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	10.4%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	9.2%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,954,658	A→G	11.6%	intergenic (‑161/‑120)	PP_2586 ← / → PP_2587	putative amino acid transporter/LuxR family transcriptional regulator
RA	2,958,079	A→T	9.7%	D280V (GAC→GTC)	PP_2589 →	aldehyde dehydrogenase family protein
RA	2,958,082	T→A	8.5%	L281Q (CTG→CAG)	PP_2589 →	aldehyde dehydrogenase family protein
RA	2,958,085	A→T	8.5%	D282V (GAC→GTC)	PP_2589 →	aldehyde dehydrogenase family protein
RA	2,958,807	G→C	6.1%	intergenic (+73/+69)	PP_2589 → / ← PP_2590	aldehyde dehydrogenase family protein/ferric siderophore receptor
RA	2,974,448	G→T	9.8%	M127I (ATG→ATT)	PP_2601 →	IclR family transcriptional regulator
RA	2,977,992	C→T	6.8%	S121S (TCG→TCA)	PP_2604 ←	major facilitator family transporter
RA	2,985,148	G→T	6.5%	P86T (CCC→ACC)	PP_2611 ←	membrane protein
RA	3,001,815	C→G	9.0%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,001,821	G→A	9.5%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,001,824	G→C	9.0%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,001,827	T→C	8.0%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,001,833	C→G	8.7%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,021,733	C→A	7.8%	T757T (ACC→ACA)	PP_2638 →	cellulose synthase operon protein C
RA	3,029,214	G→C	6.2%	L289F (TTG→TTC)	pcaY →	aromatic acid chemoreceptor
RA	3,049,379	A→T	6.3%	Y180F (TAC→TTC)	PP_2662 →	hypothetical protein
RA	3,059,542	T→C	11.1%	L274P (CTC→CCC)	PP_2671 →	sensor histidine kinase
RA	3,068,885	A→T	7.7%	intergenic (+136/‑27)	qedH‑II → / → aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
RA	3,071,211	T→A	8.6%	C22S (TGC→AGC)	yiaY →	Fe‑containing alcohol dehydrogenase
RA	3,074,213	A→C	6.8%	intergenic (+248/‑182)	PP_2683 → / → PP_2684	two‑component system sensor histidine kinase/response regulator/membrane protein
RA	3,074,215	T→A	7.9%	intergenic (+250/‑180)	PP_2683 → / → PP_2684	two‑component system sensor histidine kinase/response regulator/membrane protein
RA	3,074,217	G→T	7.6%	intergenic (+252/‑178)	PP_2683 → / → PP_2684	two‑component system sensor histidine kinase/response regulator/membrane protein
RA	3,077,110	A→C	15.8%	I248S (ATC→AGC)	PP_2687 ←	hypothetical protein
RA	3,077,115	G→T	15.7%	A246A (GCC→GCA)	PP_2687 ←	hypothetical protein
RA	3,077,118	A→C	15.8%	H245Q (CAT→CAG)	PP_2687 ←	hypothetical protein
RA	3,087,769	C→G	7.1%	R259P (CGC→CCC)	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,089,376	C→G	8.0%	V279V (GTG→GTC)	metE ←	5‑methyltetrahydropteroyltriglutamate‑ homocysteine methyltransferase
RA	3,099,401	Δ1 bp	5.8%	coding (180/1470 nt)	PP_2709 →	long‑chain fatty acid‑‑CoA ligase
RA	3,100,562:1	+C	7.0%	coding (1341/1470 nt)	PP_2709 →	long‑chain fatty acid‑‑CoA ligase
RA	3,100,569	Δ1 bp	8.5%	coding (1348/1470 nt)	PP_2709 →	long‑chain fatty acid‑‑CoA ligase
RA	3,101,079	T→C	8.0%	V127A (GTC→GCC)	PP_2710 →	hypothetical protein
RA	3,122,886	G→T	6.9%	Q107H (CAG→CAT)	PP_2740 →	MerR family transcriptional regulator
RA	3,130,516	G→A	6.9%	R111R (CGG→CGA)	PP_2747 →	hypothetical protein
RA	3,137,653	A→G	6.3%	intergenic (+81/‑209)	PP_2753 → / → PP_2754	ABC transporter ATP‑binding protein/OprD family outer membrane porin
RA	3,146,578	G→C	5.5%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,579	G→C	6.2%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,147,711	T→C	6.4%	D53G (GAC→GGC)	sfnA ←	acyl‑CoA dehydrogenase/oxidase family protein
RA	3,156,931	G→A	19.4%	P176P (CCC→CCT)	PP_2772 ←	monooxygenase
RA	3,173,788	G→C	11.3%	intergenic (+9/‑42)	PP_2785 → / → PP_2786	hypothetical protein/hypothetical protein
RA	3,173,789	T→A	11.3%	intergenic (+10/‑41)	PP_2785 → / → PP_2786	hypothetical protein/hypothetical protein
RA	3,173,790	G→C	11.0%	intergenic (+11/‑40)	PP_2785 → / → PP_2786	hypothetical protein/hypothetical protein
RA	3,179,890	C→G	5.2%	A262P (GCG→CCG)	PP_2790 ←	sigma‑54 dependent sensory box protein
RA	3,179,891	C→G	5.3%	Q261H (CAG→CAC) ‡	PP_2790 ←	sigma‑54 dependent sensory box protein
RA	3,179,892	T→C	5.5%	Q261R (CAG→CGG) ‡	PP_2790 ←	sigma‑54 dependent sensory box protein
RA	3,189,278	G→C	7.6%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,279	G→C	8.3%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,196,438	A→G	9.3%	I232I (ATT→ATC)	PP_2804 ←	alpha/beta family hydrolase
RA	3,196,441	C→T	9.3%	R231R (CGG→CGA)	PP_2804 ←	alpha/beta family hydrolase
RA	3,206,103	G→A	7.7%	P469P (CCG→CCA)	PP_2811 →	hypothetical protein
RA	3,206,105	G→C	7.7%	G470A (GGC→GCC)	PP_2811 →	hypothetical protein
RA	3,206,107	T→C	7.7%	W471R (TGG→CGG)	PP_2811 →	hypothetical protein
RA	3,224,605	C→T	7.0%	E272K (GAA→AAA)	mexT ←	transcriptional regulator MexT
RA	3,224,606	G→C	7.0%	F271L (TTC→TTG) ‡	mexT ←	transcriptional regulator MexT
RA	3,224,607	A→G	7.1%	F271S (TTC→TCC) ‡	mexT ←	transcriptional regulator MexT
RA	3,227,377	T→C	8.7%	R72R (CGT→CGC)	PP_2828 →	hypothetical protein
RA	3,227,379	C→G	8.6%	A73G (GCC→GGC)	PP_2828 →	hypothetical protein
RA	3,227,381	G→A	9.2%	A74T (GCG→ACG)	PP_2828 →	hypothetical protein
RA	3,232,966	A→G	6.8%	S52G (AGC→GGC)	GbpR →	galactose‑binding protein regulator
RA	3,240,419	A→T	6.1%	I39F (ATC→TTC)	PP_2838 →	hypothetical protein
RA	3,249,662	A→C	7.1%	K428Q (AAG→CAG)	ureC →	urease subunit alpha
RA	3,249,667	G→T	7.4%	L429L (CTG→CTT)	ureC →	urease subunit alpha
RA	3,257,471	G→T	5.7%	T161N (ACC→AAC)	PP_2854 ←	hypothetical protein
RA	3,276,382	T→C	7.4%	E105G (GAG→GGG)	PP_2875 ←	hypothetical protein
RA	3,300,599	T→G	9.3%	E103A (GAG→GCG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,600	C→T	9.8%	E103K (GAG→AAG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,605	A→G	9.7%	V101A (GTG→GCG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,606	C→A	9.7%	V101L (GTG→TTG) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,304,449	T→C	6.1%	V362A (GTG→GCG)	cysS →	cysteine‑‑tRNA ligase
RA	3,304,452	G→A	6.1%	R363H (CGC→CAC)	cysS →	cysteine‑‑tRNA ligase
RA	3,304,454	G→C	6.2%	E364Q (GAG→CAG)	cysS →	cysteine‑‑tRNA ligase
RA	3,364,175	C→A	8.3%	A238D (GCC→GAC)	PP_2960 →	transcriptional regulator, AraC family
RA	3,364,552	G→A	15.5%	A225V (GCC→GTC)	PP_2961 ←	LysR family transcriptional regulator
RA	3,367,360	G→C	9.4%	L222L (CTG→CTC)	PP_2964 →	transposase
RA	3,367,361	G→C	9.1%	E223Q (GAG→CAG)	PP_2964 →	transposase
RA	3,372,120	T→C	9.8%	intergenic (‑48/‑71)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,121	G→C	9.7%	intergenic (‑49/‑70)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,122	G→A	10.0%	intergenic (‑50/‑69)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,376,387	G→A	8.0%	A77T (GCC→ACC)	PP_2975 →	insertion element ISR1 protein A3
RA	3,380,890	G→T	6.1%	A188S (GCC→TCC)	tnpT‑I →	cointegrate resolution protein T
RA	3,384,075	T→C	7.5%	intergenic (‑10/+109)	PP_2985 ← / ← PP_5548	hypothetical protein/hypothetical protein
RA	3,384,784	A→C	7.6%	P211P (CCT→CCG)	PP_2986 ←	oxidoreductase
RA	3,403,812	C→T	6.8%	P77L (CCA→CTA) ‡	PP_3014 →	hypothetical protein
RA	3,403,813	A→T	6.8%	P77P (CCA→CCT) ‡	PP_3014 →	hypothetical protein
RA	3,403,814	A→G	6.8%	S78G (AGC→GGC)	PP_3014 →	hypothetical protein
RA	3,413,232	C→T	6.6%	A81V (GCC→GTC)	PP_3026 →	recombinase
RA	3,417,744	T→G	6.1%	E99D (GAA→GAC) ‡	PP_3030 ←	hypothetical protein
RA	3,417,745	T→A	6.0%	E99V (GAA→GTA) ‡	PP_3030 ←	hypothetical protein
RA	3,417,746	C→A	5.7%	E99* (GAA→TAA) ‡	PP_3030 ←	hypothetical protein
RA	3,422,810	C→T	14.5%	A323V (GCT→GTT) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,811	T→A	14.5%	A323A (GCT→GCA) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,812	A→G	14.7%	T324A (ACC→GCC)	PP_3038 →	TraC domain‑containing protein
RA	3,422,822	G→T	7.3%	W327L (TGG→TTG)	PP_3038 →	TraC domain‑containing protein
RA	3,428,030	C→T	7.4%	P660L (CCG→CTG)	PP_3042 →	terminase large subunit
RA	3,430,349	G→C	7.1%	S189S (TCG→TCC)	PP_3045 →	ATP‑dependent protease ClpP
RA	3,431,783	T→G	5.6%	V142V (GTT→GTG)	PP_3047 →	hypothetical protein
RA	3,432,765	G→A	14.3%	R33R (CGG→CGA)	PP_3049 →	hypothetical protein
RA	3,447,753	A→G	10.6%	A173A (GCA→GCG)	PP_5556 →	bacteriophage lysis protein
RA	3,457,059	T→G	6.6%	E77A (GAG→GCG)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,457,062	C→A	7.6%	R76L (CGC→CTC)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,459,307	C→G	5.3%	R352P (CGG→CCG)	PP_3075 ←	transcriptional regulator
RA	3,466,055	G→C	7.0%	noncoding (105/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,057	A→T	6.7%	noncoding (103/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,466,058	G→C	6.7%	noncoding (102/119 nt)	PP_mr39 ←	P15 ncRNA
RA	3,497,329	Δ1 bp	8.4%	coding (268/765 nt)	PP_5562 ←	hypothetical protein
RA	3,497,333	G→C	8.6%	V88V (GTC→GTG)	PP_5562 ←	hypothetical protein
RA	3,497,336:1	+G	8.5%	coding (261/765 nt)	PP_5562 ←	hypothetical protein
RA	3,520,081	T→A	5.4%	intergenic (+700/‑180)	PP_5580 → / → PP_5582	hypothetical protein/hypothetical protein
RA	3,528,566	T→A	10.9%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,528,569	T→A	10.9%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,532,120:1	+C	100%	coding (110/762 nt)	yeaE ←	methylglyoxal reductase
RA	3,534,762	T→G	8.9%	intergenic (+49/‑106)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,767	A→C	8.5%	intergenic (+54/‑101)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,768	C→A	10.0%	intergenic (+55/‑100)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,771	T→G	8.8%	intergenic (+58/‑97)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,772	G→T	9.7%	intergenic (+59/‑96)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,534,777	C→A	8.8%	intergenic (+64/‑91)	atoB → / → PP_3124	3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter
RA	3,551,221	G→C	6.5%	G125R (GGC→CGC)	PP_3135 →	glycosyl transferase
RA	3,569,454	C→T	11.7%	intergenic (+13/+25)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,457	A→T	12.5%	intergenic (+16/+22)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,458	A→T	12.5%	intergenic (+17/+21)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,459	A→T	12.6%	intergenic (+18/+20)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,569,462	A→G	12.5%	intergenic (+21/+17)	PP_3150 → / ← sad‑II	hypothetical protein/NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,578,428	T→A	14.1%	intergenic (+105/‑219)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,578,429	T→A	14.0%	intergenic (+106/‑218)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,578,430	T→A	13.8%	intergenic (+107/‑217)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,578,431	T→A	14.0%	intergenic (+108/‑216)	PP_3158 → / → PP_5589	hypothetical protein/rhs repeat‑associated core domain‑containing protein
RA	3,604,685	T→C	11.7%	intergenic (‑32/‑96)	PP_3179 ← / → PP_3180	LysR family transcriptional regulator/Smp‑30/Cgr1 family protein
RA	3,610,980	G→A	10.8%	P902S (CCC→TCC)	mcoA ←	Mn(II) copper oxidase A
RA	3,620,295	T→G	6.3%	S20R (AGC→CGC)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,620,299	C→A	6.4%	A18A (GCG→GCT)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,621,512	T→G	6.2%	S176R (AGC→CGC)	PP_3192 ←	hypothetical protein
RA	3,624,144	G→C	10.1%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,628,082	C→G	13.2%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,637,179	C→T	9.7%	V369V (GTC→GTT)	PP_3203 →	MFS transporter
RA	3,642,356	T→C	8.5%	E283E (GAA→GAG)	PP_3209 ←	isoxanthopterin deaminase
RA	3,644,951	A→G	6.0%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,655,760	C→T	7.1%	L211L (CTG→CTA)	PP_3220 ←	ABC transporter ATP‑binding protein
RA	3,682,888	G→A	7.0%	A34T (GCG→ACG)	PP_3249 →	putative oxidoreductase
RA	3,682,940	C→T	8.1%	T51I (ACT→ATT)	PP_3249 →	putative oxidoreductase
RA	3,718,102	A→C	9.3%	L164R (CTG→CGG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,104	C→G	9.4%	A163A (GCG→GCC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,108	T→A	9.4%	K162M (AAG→ATG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,109	T→A	9.4%	K162* (AAG→TAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,113	C→G	9.4%	R160R (CGG→CGC) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,115	G→T	9.6%	R160R (CGG→AGG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,740,687	C→T	6.2%	T377M (ACG→ATG)	PP_3304 →	Bcr/CflA family multidrug resistance transporter
RA	3,742,148	C→T	5.9%	intergenic (‑216/+197)	PP_3305 ← / ← PP_3306	TerC family membrane protein/hypothetical protein
RA	3,745,734	G→A	6.5%	V340V (GTG→GTA)	paoC →	aromatic aldehyde dehydrogenase molybdopterin‑binding subunit
RA	3,762,926	T→C	6.2%	F57L (TTC→CTC)	PP_3326 →	hypothetical protein
RA	3,763,502	A→G	7.5%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,504	G→C	7.4%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,506	C→T	7.8%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,787,340	Δ1 bp	14.1%	coding (1295/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,787,718	C→A	6.8%	S306I (AGC→ATC) ‡	PP_3350 ←	hypothetical protein
RA	3,787,719	T→G	6.8%	S306R (AGC→CGC) ‡	PP_3350 ←	hypothetical protein
RA	3,787,767	G→A	59.7%	Q290* (CAG→TAG)	PP_3350 ←	hypothetical protein
RA	3,795,836	G→A	7.2%	D206D (GAC→GAT)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,798,567	G→C	10.2%	A111A (GCC→GCG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,570	G→C	9.8%	I110M (ATC→ATG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,803,264	G→A	6.9%	A218V (GCC→GTC)	PP_3361 ←	aminotransferase
RA	3,825,468	C→T	7.4%	S193N (AGC→AAC)	ptxS ←	2‑ketogluconate utilization repressor
RA	3,830,229	T→A	6.3%	D384V (GAC→GTC)	PP_3383 ←	gluconate 2‑dehydrogenase flavoprotein subunit
RA	3,835,980	G→C	10.4%	W156C (TGG→TGC)	PP_3387 →	hypothetical protein
RA	3,840,662	G→A	7.1%	T286M (ACG→ATG)	PP_3390 ←	porin
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,771	T→C	6.4%	intergenic (+54/+28)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,772	G→A	6.6%	intergenic (+55/+27)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,853,778	A→G	6.6%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,863,840	A→G	5.4%	P921P (CCA→CCG)	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,880,838	G→A	8.9%	L891L (CTG→CTA)	mexF →	multidrug RND transporter MexF
RA	3,883,061	A→G	6.1%	D27G (GAC→GGC)	PP_3428 →	TPR repeat‑containing protein
RA	3,883,571	C→G	17.0%	A197G (GCC→GGC) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,883,572	C→G	16.5%	A197A (GCC→GCG) ‡	PP_3428 →	TPR repeat‑containing protein
RA	3,891,050	A→G	5.0%	S12G (AGC→GGC)	PP_3435 →	hypothetical protein
RA	3,908,403	C→T	5.8%	L118L (CTG→TTG)	PP_3450 →	TPR repeat‑containing protein
RA	3,908,416	A→G	5.6%	N122S (AAC→AGC)	PP_3450 →	TPR repeat‑containing protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,955,294	G→A	22.3%	S1697S (AGC→AGT)	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,956,687	T→G	7.0%	D1233A (GAC→GCC)	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,981,166	G→A	9.3%	A179V (GCC→GTC)	cobW ←	adenosylcobalamin biosynthesis protein CobW
RA	3,981,175	T→C	9.5%	D176G (GAC→GGC)	cobW ←	adenosylcobalamin biosynthesis protein CobW
RA	3,989,982	C→G	5.2%	S89R (AGC→AGG)	PP_3516 →	AraC family transcriptional regulator
RA	3,998,297	C→T	8.7%	S328L (TCG→TTG)	PP_3526 →	AraC family transcriptional regulator
RA	3,998,300	G→T	8.7%	R329L (CGC→CTC)	PP_3526 →	AraC family transcriptional regulator
RA	3,998,303	A→C	8.8%	E330A (GAG→GCG)	PP_3526 →	AraC family transcriptional regulator
RA	3,998,306	A→G	9.0%	Q331R (CAA→CGA)	PP_3526 →	AraC family transcriptional regulator
RA	4,030,279	G→T	8.9%	intergenic (+34/‑59)	PP_3553 → / → PP_3554	AMP‑binding domain‑containing protein/acyl‑CoA dehydrogenase family protein
RA	4,038,223	A→C	7.0%	T8P (ACC→CCC)	PP_3559 →	glycine betaine ABC transporter permease
RA	4,050,675	C→T	8.0%	G236G (GGC→GGT)	oprB‑III →	carbohydrate‑selective porin
RA	4,050,680	T→C	6.6%	V238A (GTG→GCG)	oprB‑III →	carbohydrate‑selective porin
RA	4,050,684	A→G	6.4%	V239V (GTA→GTG)	oprB‑III →	carbohydrate‑selective porin
RA	4,051,898	C→T	6.7%	R186H (CGT→CAT)	PP_3571 ←	acetylornithine deacetylase
RA	4,051,901	A→G	6.5%	M185T (ATG→ACG)	PP_3571 ←	acetylornithine deacetylase
RA	4,054,193:1	+T	8.9%	coding (767/1320 nt)	PP_3573 →	monooxygenase
RA	4,054,198	Δ1 bp	8.9%	coding (772/1320 nt)	PP_3573 →	monooxygenase
RA	4,054,206	C→G	7.0%	V260V (GTC→GTG)	PP_3573 →	monooxygenase
RA	4,066,001	A→C	7.7%	R1021R (CGT→CGG)	mdtC ←	multidrug transporter membrane protein
RA	4,066,004	G→T	7.9%	N1020K (AAC→AAA)	mdtC ←	multidrug transporter membrane protein
RA	4,066,007	G→C	8.2%	F1019L (TTC→TTG)	mdtC ←	multidrug transporter membrane protein
RA	4,066,010	A→C	8.1%	R1018R (CGT→CGG)	mdtC ←	multidrug transporter membrane protein
RA	4,066,013	G→T	7.9%	H1017Q (CAC→CAA)	mdtC ←	multidrug transporter membrane protein
RA	4,082,621	G→C	6.2%	G189A (GGC→GCC)	PP_3592 →	RpiR family transcriptional regulator
RA	4,082,741	T→G	8.0%	L229R (CTG→CGG)	PP_3592 →	RpiR family transcriptional regulator
RA	4,090,174	T→C	10.3%	G75G (GGT→GGC)	gudP →	glucarate transporter
RA	4,125,301	A→T	8.9%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,125,927	T→C	8.3%	intergenic (‑96/+90)	PP_3629 ← / ← opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D
RA	4,131,842	G→A	8.8%	R38R (CGC→CGT)	PP_3635 ←	sulfonate ABC transporter permease
RA	4,154,163	G→A	8.6%	T444M (ACG→ATG)	PP_3658 ←	aromatic compound MFS transporter
RA	4,169,870	G→A	8.3%	P8L (CCG→CTG)	katG ←	catalase‑peroxidase
RA	4,170,445	T→G	8.9%	L56R (CTG→CGG)	PP_3669 →	LysR family transcriptional regulator
RA	4,170,450	C→A	8.5%	R58S (CGC→AGC)	PP_3669 →	LysR family transcriptional regulator
RA	4,176,699	T→C	6.3%	R460R (CGT→CGC)	PP_3676 →	hypothetical protein
RA	4,176,701	A→G	6.1%	D461G (GAT→GGT)	PP_3676 →	hypothetical protein
RA	4,185,560	C→G	7.8%	L446L (CTC→CTG)	PP_3681 →	putative Helicase
RA	4,197,972	C→T	6.5%	intergenic (‑290/‑194)	PP_5620 ← / → PP_3689	hypothetical protein/serine/threonine protein phosphatase
RA	4,240,102	A→C	7.3%	I63S (ATC→AGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,240,105	G→C	7.1%	A62G (GCC→GGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,248,903	C→G	6.6%	G375A (GGC→GCC) ‡	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,904	C→G	6.6%	G375R (GGC→CGC) ‡	PP_3724 ←	acyl‑CoA synthetase
RA	4,252,202	G→C	6.9%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,205	G→C	6.9%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,264,881	T→C	7.0%	F32L (TTC→CTC) ‡	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,883	C→G	6.9%	F32L (TTC→TTG) ‡	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,885	G→A	7.0%	S33N (AGC→AAC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,912	T→A	6.3%	L42Q (CTG→CAG)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,264,918	A→T	6.5%	D44V (GAC→GTC)	vanB →	vanillate O‑demethylase oxidoreductase
RA	4,266,148	G→A	7.0%	A104V (GCG→GTG)	PP_3738 ←	transcriptional regulator VanR
RA	4,267,765:1	+C	100%	coding (93/1254 nt)	galP‑IV ←	porin‑like protein
RA	4,268,299	C→T	8.7%	L334L (CTG→CTA)	PP_3740 ←	MFS transporter
RA	4,273,232	C→G	7.2%	L215F (TTG→TTC)	glcC ←	transcriptional regulator GlcC
RA	4,287,468	C→G	9.5%	G90R (GGC→CGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,287,469	C→G	8.0%	A89A (GCG→GCC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,293,967	C→G	5.3%	D13H (GAC→CAC)	PP_3763 ←	precorrin‑6A synthase
RA	4,299,634	G→A	8.3%	A89T (GCA→ACA)	PP_3772 →	repressor protein‑like protein
RA	4,301,575	G→C	7.8%	intergenic (+65/‑1235)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,301,577	G→C	8.1%	intergenic (+67/‑1233)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,301,579	G→C	8.6%	intergenic (+69/‑1231)	PP_3774 → / → PP_5627	hypothetical protein/hypothetical protein
RA	4,311,314	T→A	10.0%	F12I (TTT→ATT) ‡	PP_3784 →	hypothetical protein
RA	4,311,315	T→A	10.0%	F12Y (TTT→TAT) ‡	PP_3784 →	hypothetical protein
RA	4,311,503	Δ1 bp	8.9%	coding (223/1152 nt)	PP_3784 →	hypothetical protein
RA	4,316,022	A→C	10.0%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	10.0%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,333,093	T→G	6.2%	intergenic (+33/+51)	PP_3804 → / ← yaiW	hypothetical protein/lipoprotein
RA	4,333,094	T→A	6.4%	intergenic (+34/+50)	PP_3804 → / ← yaiW	hypothetical protein/lipoprotein
RA	4,333,095	C→A	7.8%	intergenic (+35/+49)	PP_3804 → / ← yaiW	hypothetical protein/lipoprotein
RA	4,336,532:1	+C	100%	coding (683/885 nt)	PP_3811 ←	LysR family transcriptional regulator
RA	4,340,075	A→T	17.8%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,348,705	A→G	62.0%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,357,746	T→C	9.2%	intergenic (+92/‑162)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,357,747	G→A	8.9%	intergenic (+93/‑161)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,359,592	G→A	6.2%	L122L (CTG→TTG)	PP_3834 ←	hypothetical protein
RA	4,366,601	A→T	8.5%	M45K (ATG→AAG)	PP_3843 ←	hypothetical protein
RA	4,381,772	C→T	81.8%	E340K (GAG→AAG)	PP_3857 ←	hypothetical protein
RA	4,385,412	C→T	6.8%	A42T (GCC→ACC)	PP_3860 ←	FluMu protein gp47
RA	4,389,501	T→C	6.8%	T414A (ACG→GCG)	PP_3865 ←	tail protein
RA	4,389,508	T→A	10.8%	T411T (ACA→ACT)	PP_3865 ←	tail protein
RA	4,402,947	G→C	6.2%	R69R (CGC→CGG)	PP_3881 ←	terminase large subunit
RA	4,410,832	T→C	76.9%	L103L (CTA→CTG)	PP_3894 ←	replication protein O
RA	4,417,603	C→G	6.7%	R166G (CGC→GGC)	PP_3905 →	LuxR family transcriptional regulator
RA	4,425,139	G→C	7.6%	intergenic (‑197/‑603)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,425,141	G→C	7.7%	intergenic (‑199/‑601)	PP_5647 ← / → PP_3917	hypothetical protein/hypothetical protein
RA	4,426,204	G→C	7.4%	E29Q (GAA→CAA)	PP_3919 →	hypothetical protein
RA	4,428,461	T→G	5.8%	D102A (GAC→GCC)	sohB ←	peptidase
RA	4,428,464	C→A	6.2%	G101V (GGC→GTC)	sohB ←	peptidase
RA	4,433,112	Δ1 bp	5.9%	coding (333/351 nt)	PP_5648 ←	hypothetical protein
RA	4,433,122:1	+T	5.3%	coding (323/351 nt)	PP_5648 ←	hypothetical protein
RA	4,434,228	G→A	7.1%	D72N (GAC→AAC)	PP_3929 →	hypothetical protein
RA	4,451,126	G→A	9.1%	V244M (GTG→ATG)	nicB →	nicotinate dehydrogenase subunit B
RA	4,451,822	G→T	6.7%	A476S (GCC→TCC)	nicB →	nicotinate dehydrogenase subunit B
RA	4,467,796	G→A	8.3%	R14H (CGT→CAT)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,800	A→T	7.8%	S15S (TCA→TCT)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,804	T→C	7.9%	W17R (TGG→CGG) ‡	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,805	G→A	7.9%	W17* (TGG→TAG) ‡	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,467,809	A→T	8.2%	R18R (CGA→CGT)	PP_3959 →	voltage‑gated chloride channel family protein
RA	4,479,111	C→G	7.3%	F154L (TTC→TTG)	ybdR →	Zn‑dependent oxidoreductase
RA	4,479,114	A→T	7.4%	K155N (AAA→AAT)	ybdR →	Zn‑dependent oxidoreductase
RA	4,479,116	T→G	7.4%	V156G (GTC→GGC)	ybdR →	Zn‑dependent oxidoreductase
RA	4,479,177	G→C	9.1%	W176C (TGG→TGC)	ybdR →	Zn‑dependent oxidoreductase
RA	4,490,818	T→C	8.8%	D349G (GAT→GGT) ‡	PP_3982 ←	hypothetical protein
RA	4,490,819	C→A	8.8%	D349Y (GAT→TAT) ‡	PP_3982 ←	hypothetical protein
RA	4,490,822	T→G	9.1%	S348R (AGC→CGC)	PP_3982 ←	hypothetical protein
RA	4,490,823	G→A	9.1%	H347H (CAC→CAT)	PP_3982 ←	hypothetical protein
RA	4,508,565	A→G	6.9%	G72G (GGT→GGC)	cysG ←	multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
RA	4,508,572	A→T	6.6%	L70Q (CTG→CAG)	cysG ←	multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
RA	4,520,454	A→T	8.3%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,520,464	A→G	8.5%	intergenic (+55/+17)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,521,834	C→T	7.5%	intergenic (‑97/‑318)	icd ← / → idh	NADP(+)‑specific isocitrate dehydrogenase/isocitrate dehydrogenase
RA	4,525,550	C→G	6.6%	H161D (CAC→GAC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,551	A→C	7.3%	H161P (CAC→CCC) ‡	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,525,557	T→A	7.5%	V163D (GTC→GAC)	mnmA →	tRNA 2‑thiouridine(34) synthase MnmA
RA	4,528,353	T→A	9.6%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,535,071	A→G	5.8%	L130L (TTA→TTG)	PP_4022 →	hypothetical protein
RA	4,535,072	C→G	5.5%	P131A (CCA→GCA) ‡	PP_4022 →	hypothetical protein
RA	4,535,073	C→T	5.7%	P131L (CCA→CTA) ‡	PP_4022 →	hypothetical protein
RA	4,552,022	T→G	13.3%	intergenic (+116/+65)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,552,023	T→A	13.2%	intergenic (+117/+64)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,552,024	C→A	14.8%	intergenic (+118/+63)	pydA → / ← rutR	NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
RA	4,557,029	T→G	13.6%	K150Q (AAG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,034	A→C	14.1%	L148R (CTG→CGG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,037	G→T	14.3%	P147Q (CCG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,042	C→A	15.3%	L145L (CTG→CTT)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,984	T→C	6.3%	M58V (ATG→GTG)	PP_4045 ←	hypothetical protein
RA	4,557,993	A→C	5.6%	S55A (TCG→GCG)	PP_4045 ←	hypothetical protein
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,587,695	G→T	9.6%	R40R (CGC→CGA) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,697	G→C	9.6%	R40G (CGC→GGC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,698	G→C	9.6%	S39S (TCC→TCG) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,587,700	A→C	9.1%	S39A (TCC→GCC) ‡	PP_4063 ←	long‑chain fatty acid‑‑CoA ligase
RA	4,603,669	T→C	6.3%	intergenic (+1000/‑502)	PP_4074 → / → PP_4076	hypothetical protein/hypothetical protein
RA	4,605,372	A→C	7.7%	Q263P (CAG→CCG) ‡	PP_4077 →	hypothetical protein
RA	4,605,373	G→T	7.2%	Q263H (CAG→CAT) ‡	PP_4077 →	hypothetical protein
RA	4,612,253	C→G	5.9%	intergenic (+1215/‑892)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,613,433	A→G	6.8%	K97E (AAG→GAG)	PP_4084 →	hypothetical protein
RA	4,613,456	G→A	8.3%	A104A (GCG→GCA)	PP_4084 →	hypothetical protein
RA	4,613,458	C→G	7.8%	A105G (GCC→GGC)	PP_4084 →	hypothetical protein
RA	4,613,460	T→C	8.3%	C106R (TGC→CGC)	PP_4084 →	hypothetical protein
RA	4,614,721	C→T	8.3%	D364D (GAC→GAT)	PP_4085 →	rhs family protein
RA	4,618,250	A→G	9.7%	H2R (CAC→CGC)	PP_5652 →	hypothetical protein
RA	4,635,581	C→T	92.5%	G59S (GGC→AGC)	uvrY ←	BarA/UvrY two‑componenent system response regulator
RA	4,659,184	C→T	12.9%	A12A (GCC→GCT)	nuoE →	NADH‑quinone oxidoreductasesubunit E
RA	4,659,186	T→A	12.7%	L13Q (CTG→CAG)	nuoE →	NADH‑quinone oxidoreductasesubunit E
RA	4,659,188	A→G	13.1%	S14G (AGC→GGC)	nuoE →	NADH‑quinone oxidoreductasesubunit E
RA	4,662,807	C→T	7.2%	A557A (GCC→GCT)	nuoG →	NADH‑quinone oxidoreductase subunit G
RA	4,668,407	G→A	5.7%	L93L (CTG→CTA)	nuoM →	NADH‑quinone oxidoreductase subunit M
RA	4,681,307	G→A	24.6%	A159A (GCG→GCA)	gloB →	hydroxyacylglutathione hydrolase
RA	4,682,236	G→A	7.8%	D176N (GAC→AAC)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,711,617	G→A	6.9%	intergenic (‑76/‑152)	gpsA ← / → PP_4171	glycerol‑3‑phosphate dehydrogenase/hypothetical protein
RA	4,719,745	T→G	8.7%	Q17P (CAG→CCG)	PP_4176 ←	5‑oxo‑L‑prolinase
RA	4,725,040	G→A	14.2%	intergenic (+25/+43)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,041	A→T	14.0%	intergenic (+26/+42)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,725,042	T→C	14.3%	intergenic (+27/+41)	PP_5661 → / ← PP_4183	putative lipoprotein/membrane protein
RA	4,731,499	T→G	5.6%	intergenic (‑56/+38)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,500	T→C	5.8%	intergenic (‑57/+37)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,501	G→A	6.1%	intergenic (‑58/+36)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,731,502	C→A	6.9%	intergenic (‑59/+35)	lpdG ← / ← sucB	dihydrolipoyl dehydrogenase/2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
RA	4,732,994	G→T	7.7%	Q881K (CAG→AAG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,001	Δ1 bp	7.4%	coding (2634/2832 nt)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,005	G→T	7.4%	A877E (GCG→GAG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,008	T→A	7.5%	H876L (CAT→CTT)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,011	T→A	8.9%	K875M (AAG→ATG)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,014	A→C	7.7%	L874R (CTC→CGC)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,733,017:1	+C	7.8%	coding (2618/2832 nt)	sucA ←	2‑oxoglutarate dehydrogenase subunit E1
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	13.6%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	16.6%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	13.7%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	13.4%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,758,136	G→C	5.6%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,141	G→C	5.5%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,758,147	A→G	5.8%	intergenic (+7/+14)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,758,424	C→G	9.1%	V454L (GTG→CTG)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,758,425	G→T	8.9%	V453V (GTC→GTA) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,758,426	A→C	9.0%	V453G (GTC→GGC) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,758,427	C→G	8.8%	V453L (GTC→CTC) ‡	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,759,457	T→G	10.0%	P109P (CCA→CCC)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,759,458:1	+T	10.9%	coding (326/1623 nt)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,773,938	C→T	6.7%	G1777S (GGC→AGC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,783,688	A→G	8.5%	L1209P (CTG→CCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,691	C→T	8.7%	R1208Q (CGG→CAG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,792,301	G→C	5.3%	A513A (GCC→GCG)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,793,961	C→T	8.0%	intergenic (‑122/+34)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,793,968	A→T	9.7%	intergenic (‑129/+27)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,793,969	A→T	9.7%	intergenic (‑130/+26)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,793,976	A→G	7.8%	intergenic (‑137/+19)	pvdI ← / ← PP_4222	non‑ribosomal peptide synthetase/protein SyrP
RA	4,795,645	A→C	7.7%	R266R (CGT→CGG)	pvdH ←	diaminobutyrate‑2‑oxoglutarate transaminase
RA	4,796,604	A→G	14.7%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	16.8%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	17.9%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	15.5%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	15.5%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	18.1%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,807,254	G→A	8.0%	S213F (TCC→TTC)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,812,183	C→T	9.3%	intergenic (+103/‑290)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,184	A→T	8.0%	intergenic (+104/‑289)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,185	A→G	8.0%	intergenic (+105/‑288)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,819,948	C→T	9.3%	A3748T (GCC→ACC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,436	C→T	8.9%	G3585D (GGC→GAC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,825,791	A→G	6.2%	F1800S (TTC→TCC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,277:1	+G	6.1%	coding (4913/12954 nt)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,282	G→T	5.8%	I1636I (ATC→ATA) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,283	A→C	5.9%	I1636S (ATC→AGC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,287	Δ1 bp	6.1%	coding (4903/12954 nt)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,827,095	T→C	54.3%	V1365V (GTA→GTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,837,280	C→T	8.5%	A429A (GCC→GCT)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,837,281	A→G	8.5%	S430G (AGC→GGC)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,839,707:1	+G	100%	coding (73/1443 nt)	ccoN‑II →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,848,920	A→T	6.0%	K74* (AAG→TAG)	hemN →	oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,855,539	T→G	8.6%	I106M (ATT→ATG)	PP_4270 →	hypothetical protein
RA	4,855,540	C→A	8.6%	H107N (CAT→AAT)	PP_4270 →	hypothetical protein
RA	4,857,508:1	+T	8.8%	coding (428/558 nt)	PP_4272 ←	membrane protein
RA	4,857,512	G→T	8.5%	Q142K (CAG→AAG)	PP_4272 ←	membrane protein
RA	4,857,517	A→C	9.4%	F140C (TTC→TGC)	PP_4272 ←	membrane protein
RA	4,857,521	Δ1 bp	9.1%	coding (415/558 nt)	PP_4272 ←	membrane protein
RA	4,873,279	G→A	8.3%	A114V (GCG→GTG)	aqpZ ←	aquaporin Z
RA	4,896,399	T→C	10.0%	intergenic (+32/‑176)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,410	A→G	8.0%	intergenic (+43/‑165)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,413	Δ1 bp	8.0%	intergenic (+46/‑162)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,414	Δ1 bp	8.0%	intergenic (+47/‑161)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,415	Δ1 bp	8.0%	intergenic (+48/‑160)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,422	T→C	9.9%	intergenic (+55/‑153)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,425	G→A	9.8%	intergenic (+58/‑150)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,431:1	+G	8.2%	intergenic (+64/‑144)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,431:3	+G	8.2%	intergenic (+64/‑144)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,896,434	C→T	8.2%	intergenic (+67/‑141)	PP_4304 → / → sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
RA	4,900,065	A→G	7.8%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,088	T→C	6.2%	intergenic (+49/‑449)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,671	G→A	7.4%	V196M (GTG→ATG) ‡	PP_4310 →	hydantoin racemase
RA	4,902,672	T→C	7.4%	V196A (GTG→GCG) ‡	PP_4310 →	hydantoin racemase
RA	4,909,921	C→G	6.8%	intergenic (+314/+165)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,931,720	G→A	6.1%	G166G (GGC→GGT)	fliA ←	RNA polymerase sigma 28 factor
RA	4,936,917	A→T	13.0%	intergenic (‑328/‑90)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,918	C→G	14.3%	intergenic (‑329/‑89)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,919	A→T	14.2%	intergenic (‑330/‑88)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,944,738	C→T	7.8%	intergenic (+98/+700)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,740	C→T	7.4%	intergenic (+100/+698)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,741	A→G	7.8%	intergenic (+101/+697)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,944,743	A→G	7.8%	intergenic (+103/+695)	PP_5673 → / ← flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
RA	4,950,972	T→G	18.2%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	19.0%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,951,160	C→T	7.8%	G371G (GGG→GGA)	fliK ←	flagellar hook‑length control protein FliK
RA	4,967,636	T→C	8.3%	D14G (GAT→GGT)	fliD ←	flagellar filament capping protein
RA	4,970,004	C→A	11.0%	G80V (GGC→GTC)	fliC ←	flagellin
RA	4,976,230	C→T	8.1%	A181T (GCC→ACC)	flgJ ←	peptidoglycan hydrolase FlgJ
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,991,313	G→T	8.0%	intergenic (‑182/+47)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,314	A→C	7.8%	intergenic (‑183/+46)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,995,522	C→G	7.0%	R396G (CGC→GGC)	bkdB →	branched‑chain alpha‑keto acid dehydrogenase complex lipoamide acyltransferase
RA	5,000,740	T→C	13.1%	intergenic (+210/‑1476)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,000,741	G→A	13.0%	intergenic (+211/‑1475)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,000,751	A→G	7.9%	intergenic (+221/‑1465)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,006,817	C→G	5.1%	R1057G (CGA→GGA)	PP_4410 →	hypothetical protein
RA	5,006,820	T→G	6.4%	S1058A (TCA→GCA)	PP_4410 →	hypothetical protein
RA	5,015,893	Δ1 bp	100%	intergenic (‑156/+78)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,059,500	Δ1 bp	7.4%	coding (1334/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,505	A→T	7.3%	N443K (AAT→AAA)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,059,508:1	+G	7.2%	coding (1326/1581 nt)	PP_4458 ←	opine ABC transporter substrate‑binding protein
RA	5,079,126	T→A	9.5%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,129	T→A	9.5%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,085,539	A→G	6.4%	V40A (GTG→GCG)	astE ←	succinylglutamate desuccinylase
RA	5,097,222	G→C	7.7%	intergenic (+213/+79)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,225	G→T	7.9%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,103,088	A→T	7.2%	intergenic (+20/‑170)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,103,089	G→C	6.3%	intergenic (+21/‑169)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,103,090	A→T	7.2%	intergenic (+22/‑168)	phhB → / → PP_5694	pterin‑4‑alpha‑carbinolamine dehydratase/hypothetical protein
RA	5,108,774	A→G	5.5%	I171V (ATC→GTC)	PP_4494 →	LysR family transcriptional regulator
RA	5,131,860	C→A	6.4%	L72M (CTG→ATG) ‡	PP_4517 →	hypothetical protein
RA	5,131,861	T→G	6.5%	L72R (CTG→CGG) ‡	PP_4517 →	hypothetical protein
RA	5,154,690	C→A	6.3%	P126P (CCG→CCT)	azoR2 ←	FMN‑dependent NADH‑azoreductase
RA	5,162,834	T→C	12.8%	A339A (GCA→GCG)	PP_4545 ←	beta‑ketodecanoyl‑ACP synthase
RA	5,166,231	T→C	9.3%	D550G (GAC→GGC)	hrpA ←	ATP‑dependent helicase HrpA
RA	5,177,038	A→G	10.4%	L316S (TTG→TCG)	PP_4553 ←	ECF family RNA polymerase sigma‑70 factor
RA	5,177,680	T→A	10.8%	D102V (GAT→GTT)	PP_4553 ←	ECF family RNA polymerase sigma‑70 factor
RA	5,182,059	G→T	7.7%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	16.8%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	12.4%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	10.8%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,192,759	T→G	7.9%	intergenic (+140/‑62)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,192,762	T→G	6.5%	intergenic (+143/‑59)	PP_4572 → / → PP_4573	hypothetical protein/AAA family ATPase
RA	5,201,830	C→T	8.9%	A46V (GCC→GTC)	PP_4583 →	putative Peptidase
RA	5,201,833	A→G	8.8%	D47G (GAC→GGC)	PP_4583 →	putative Peptidase
RA	5,202,981	C→A	8.9%	L430M (CTG→ATG)	PP_4583 →	putative Peptidase
RA	5,209,427	A→G	60.8%	R236R (CGT→CGC)	rnd ←	ribonuclease D
RA	5,233,543	T→C	11.5%	V136A (GTC→GCC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,546	A→T	11.4%	D137V (GAC→GTC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,233,549	G→A	11.1%	G138D (GGC→GAC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,237,540	C→T	11.2%	intergenic (+23/‑1)	PP_5700 → / → PP_4614	hypothetical protein/hypothetical protein
RA	5,237,541	T→C	11.3%	M1M (TTG→CTG) †‡	PP_4614 →	hypothetical protein
RA	5,237,542	T→A	10.8%	M1* (TTG→TAG) †‡	PP_4614 →	hypothetical protein
RA	5,237,543	G→A	9.8%	M1L (TTG→TTA) †‡	PP_4614 →	hypothetical protein
RA	5,237,544	A→G	10.7%	S2G (AGC→GGC)	PP_4614 →	hypothetical protein
RA	5,239,884	G→A	10.9%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,889	T→C	11.4%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,249,446	G→A	6.9%	R126C (CGT→TGT)	PP_4624 ←	alpha/beta family hydrolase
RA	5,250,356	C→T	7.2%	G110E (GGG→GAG)	cidB ←	holin CidA anti‑holin regulator
RA	5,250,363	A→G	6.9%	S108P (TCC→CCC)	cidB ←	holin CidA anti‑holin regulator
RA	5,258,189	T→A	8.4%	D323V (GAC→GTC)	PP_4635 ←	trans‑2‑enoyl‑CoA reductase
RA	5,268,951	T→A	9.2%	intergenic (+19/+17)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,268,952	T→A	9.3%	intergenic (+20/+16)	PP_4643 → / ← radA	xanthine/uracil permease family protein/DNA repair enzyme
RA	5,286,192	G→A	7.4%	Q372* (CAG→TAG)	ggt ←	gamma‑glutamyltranspeptidase
RA	5,286,505:1	+G	7.3%	coding (801/1668 nt)	ggt ←	gamma‑glutamyltranspeptidase
RA	5,295,085	C→T	9.5%	R189R (CGC→CGT)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,088	G→C	8.7%	Q190H (CAG→CAC)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,089	G→C	8.7%	V191L (GTG→CTG)	PP_4668 →	LysR family transcriptional regulator
RA	5,295,092	A→G	8.9%	T192A (ACG→GCG)	PP_4668 →	LysR family transcriptional regulator
RA	5,297,191	A→C	6.0%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	6.0%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	6.1%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	6.1%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,307,405	C→T	10.8%	intergenic (‑154/+32)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,411	T→C	11.1%	intergenic (‑160/+26)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,412	G→A	11.1%	intergenic (‑161/+25)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,418	A→G	11.5%	intergenic (‑167/+19)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,313,276	C→G	7.2%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	7.8%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,314,327	C→T	7.0%	A229A (GCG→GCA)	msrP ←	methionine sulfoxide reductase catalytic subunit
RA	5,319,943	G→T	6.1%	L59M (CTG→ATG)	PP_4681 ←	hypothetical protein
RA	5,324,153	T→C	7.8%	C263R (TGC→CGC)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,324,157	T→G	7.7%	L264R (CTG→CGG)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,324,162	C→A	7.5%	R266R (CGG→AGG)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,324,166	G→A	9.1%	R267H (CGC→CAC)	PP_4684 →	kinase‑like domain‑containing protein
RA	5,332,245	C→G	7.6%	intergenic (+28/‑21)	dksA → / → gluQ	RNA polymerase‑binding transcription factor DksA/glutamyl‑Q tRNA(Asp) synthetase
RA	5,333,664	C→A	8.0%	L32M (CTG→ATG) ‡	PP_4695 →	two‑component system sensor histidine kinase
RA	5,333,666	G→C	8.0%	L32L (CTG→CTC) ‡	PP_4695 →	two‑component system sensor histidine kinase
RA	5,333,668	T→G	8.2%	I33S (ATC→AGC)	PP_4695 →	two‑component system sensor histidine kinase
RA	5,339,896	G→T	10.7%	R375L (CGC→CTC) ‡	pcnB →	poly(A) polymerase
RA	5,339,897	C→G	10.7%	R375R (CGC→CGG) ‡	pcnB →	poly(A) polymerase
RA	5,339,900	C→G	10.7%	R376R (CGC→CGG)	pcnB →	poly(A) polymerase
RA	5,339,901	A→C	10.2%	S377R (AGC→CGC)	pcnB →	poly(A) polymerase
RA	5,348,352	A→G	6.8%	K276E (AAG→GAG)	PP_4704 →	hypothetical protein
RA	5,351,342	A→C	11.7%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,351,345	G→T	10.1%	intergenic (+24/+52)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,360,178	A→C	8.3%	L31R (CTG→CGG) ‡	nusA ←	transcription termination/antitermination factor L
RA	5,360,179	G→T	8.9%	L31M (CTG→ATG) ‡	nusA ←	transcription termination/antitermination factor L
RA	5,363,327	C→T	7.0%	V147I (GTT→ATT)	glmM ←	phosphoglucosamine mutase
RA	5,381,267	T→C	8.3%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	7.5%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	8.4%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,392,310	T→C	12.9%	I121M (ATA→ATG)	PP_5710 ←	hypothetical protein
RA	5,397,657	A→T	8.4%	L223F (TTA→TTT)	hsdS →	type I restriction modification system specificity protein
RA	5,399,798	T→A	8.5%	V204E (GTA→GAA)	PP_4743 →	hypothetical protein
RA	5,407,046	T→G	9.4%	N124T (AAC→ACC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,050	G→T	9.8%	R123S (CGC→AGC)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,051	C→G	9.8%	L122L (CTG→CTC) ‡	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,052	A→C	9.6%	L122R (CTG→CGG) ‡	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,407,056	C→A	9.6%	V121L (GTG→TTG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,409,965	G→A	8.0%	A304V (GCC→GTC)	stcD ←	N‑methylproline demethylase
RA	5,424,497	C→G	5.9%	H32Q (CAC→CAG)	PP_4764 →	histone deacetylase family protein
RA	5,424,498	C→G	5.9%	L33V (CTG→GTG)	PP_4764 →	histone deacetylase family protein
RA	5,426,754	A→T	6.5%	intergenic (+51/+17)	PP_4765 → / ← rhlE‑I	hypothetical protein/ATP‑dependent RNA helicase
RA	5,426,755	A→T	6.5%	intergenic (+52/+16)	PP_4765 → / ← rhlE‑I	hypothetical protein/ATP‑dependent RNA helicase
RA	5,430,376	A→G	7.8%	intergenic (‑58/+103)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,458,892:1	+A	6.2%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	6.1%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,459,560	T→G	11.1%	intergenic (+18/‑22)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,459,561	C→A	10.9%	intergenic (+19/‑21)	PP_4795 → / → holA	lipoprotein/DNA polymerase III subunit delta
RA	5,462,393	T→G	12.3%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,394	G→C	11.2%	intergenic (+17/+17)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,395	C→A	11.1%	intergenic (+18/+16)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,479,939:1	+G	8.8%	coding (463/993 nt)	prmA →	ribosomal protein L11 methyltransferase
RA	5,479,946	A→T	6.0%	D157V (GAT→GTT)	prmA →	ribosomal protein L11 methyltransferase
RA	5,485,150	A→G	14.7%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	17.7%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	17.0%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	15.7%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	13.9%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,507,604	G→C	9.1%	A289P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,507,607	G→C	10.3%	A290P (GCG→CCG)	cycA →	D‑alanine/beta‑alanine/D‑serine/glycine permease
RA	5,516,304	A→G	7.2%	I39V (ATC→GTC) ‡	PP_4849 →	molecular chaperone DnaK
RA	5,516,306	C→G	7.3%	I39M (ATC→ATG) ‡	PP_4849 →	molecular chaperone DnaK
RA	5,518,539	A→T	10.0%	A14A (GCT→GCA)	PP_4850 ←	membrane protein
RA	5,518,544	G→C	10.1%	P13A (CCC→GCC)	PP_4850 ←	membrane protein
RA	5,518,546	A→T	10.3%	I12N (ATT→AAT)	PP_4850 ←	membrane protein
RA	5,518,548	G→C	10.0%	G11G (GGC→GGG)	PP_4850 ←	membrane protein
RA	5,518,553	A→T	10.9%	C10S (TGC→AGC)	PP_4850 ←	membrane protein
RA	5,518,734	T→A	12.3%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	12.0%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	10.5%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,524,281	C→T	7.7%	V198I (GTC→ATC)	yhjG ←	protein YhjG
RA	5,525,770	C→A	8.2%	intergenic (+60/‑63)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,525,773	T→G	8.4%	intergenic (+63/‑60)	PP_4858 → / → PP_4859	hypothetical protein/TetR family transcriptional regulator
RA	5,529,360	C→G	7.9%	intergenic (‑574/+20)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,537,061	A→C	10.5%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,541,810	C→T	23.5%	D297N (GAC→AAC)	dnaB ←	replicative DNA helicase
RA	5,552,913	T→G	6.9%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,914	T→A	5.8%	intergenic (+577/+84)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,915	C→A	15.3%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,557,922	T→G	6.4%	intergenic (‑293/+38)	PP_4888 ← / ← purA	methyl‑accepting chemotaxis transducer/adenylosuccinate synthetase
RA	5,559,451	T→C	7.9%	Q349R (CAA→CGA)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,559,744	A→G	7.2%	A251A (GCT→GCC) ‡	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,559,745	G→C	7.2%	A251G (GCT→GGT) ‡	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,559,746	C→T	7.1%	A251T (GCT→ACT) ‡	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,565,754	A→T	6.2%	C578S (TGC→AGC)	mutL ←	DNA mismatch repair protein MutL
RA	5,565,755	A→T	5.1%	A577A (GCT→GCA)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,413	T→A	9.4%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	9.4%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,586,387	A→T	6.2%	L300Q (CTG→CAG)	PP_4914 ←	phytase‑like protein
RA	5,590,528	C→G	11.9%	V66L (GTG→CTG)	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,529	G→C	10.2%	S65R (AGC→AGG) ‡	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,590,530	C→G	10.2%	S65T (AGC→ACC) ‡	pde ←	3',5'‑cyclic‑nucleotide phosphodiesterase
RA	5,594,137	C→G	6.9%	intergenic (‑84/+61)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,594,141	G→C	7.3%	intergenic (‑88/+57)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,594,152	C→G	10.8%	intergenic (‑99/+46)	PP_4921 ← / ← thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
RA	5,608,994	G→C	14.8%	R202G (CGC→GGC)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,997	C→G	14.5%	E201Q (GAG→CAG)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,609,000	G→C	15.2%	P200A (CCT→GCT)	waaA ←	3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,614,703	A→C	10.3%	I273M (ATT→ATG)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,706	G→T	9.4%	A272A (GCC→GCA)	hldE ←	bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,625,957	G→C	5.0%	Y515* (TAC→TAG)	PP_4944 ←	carbamoyltransferase
RA	5,633,935	G→A	6.8%	A1155A (GCG→GCA)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,633,937	T→A	7.0%	L1156Q (CTG→CAG)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,633,939	T→C	7.0%	C1157R (TGC→CGC)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,633,942	A→G	6.9%	S1158G (AGC→GGC)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,641,185	G→C	6.4%	G283A (GGC→GCC) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,186	C→G	6.4%	G283G (GGC→GGG) ‡	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,652,937	T→G	7.9%	intergenic (‑38/+123)	PP_4961 ← / ← PP_4962	lipoprotein/hypothetical protein
RA	5,655,626:1	+A	10.0%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	18.4%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	18.2%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	16.0%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,182	G→T	7.4%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,185	A→C	8.0%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,669,964	C→G	6.8%	H147Q (CAC→CAG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,669,965	C→G	7.3%	L148V (CTG→GTG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,671,666	T→G	8.4%	intergenic (+85/‑85)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,671,667	T→A	8.3%	intergenic (+86/‑84)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,671,668	C→A	10.2%	intergenic (+87/‑83)	PP_4978 → / → PP_4979	hypothetical protein/substrate‑binding protein
RA	5,674,397	C→G	5.8%	P547R (CCG→CGG)	rhlE‑II →	ATP‑dependent RNA helicase
RA	5,674,660	T→G	9.9%	intergenic (+22/+118)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,661	T→A	9.5%	intergenic (+23/+117)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,662	C→A	9.8%	intergenic (+24/+116)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,696,568	C→T	11.9%	intergenic (+20/‑192)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,696,584	A→G	13.0%	intergenic (+36/‑176)	pyrC' → / → hslV	dihydroorotase‑like protein/ATP‑dependent HslVU protease peptidase subunit
RA	5,708,363	C→T	8.1%	A794V (GCG→GTG)	PP_5009 →	hypothetical protein
RA	5,714,136	A→G	6.8%	M529V (ATG→GTG)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,734,772	G→C	6.6%	R298G (CGT→GGT)	hutH ←	histidine ammonia‑lyase
RA	5,734,779	G→C	6.8%	T295T (ACC→ACG)	hutH ←	histidine ammonia‑lyase
RA	5,737,793	C→T	12.2%	A143T (GCC→ACC)	PP_5034 ←	hypothetical protein
RA	5,740,457	G→A	18.5%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	34.6%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	29.7%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	29.4%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	30.5%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	24.7%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,394	T→C	8.0%	intergenic (‑227/+20)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,746,128	G→A	20.3%	G33D (GGC→GAC)	PP_5042 →	hypothetical protein
RA	5,753,485	T→G	6.7%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	7.1%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,762,486	T→C	9.7%	intergenic (+2/‑139)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,764,798	C→T	7.0%	A260V (GCC→GTC)	ctpA →	carboxy‑terminal‑processing protease
RA	5,764,801	A→G	6.7%	D261G (GAC→GGC)	ctpA →	carboxy‑terminal‑processing protease
RA	5,768,096	C→T	6.8%	E926K (GAG→AAG)	PP_5060 ←	hypothetical protein
RA	5,777,317	A→C	5.1%	K545T (AAG→ACG)	betA‑II →	choline dehydrogenase
RA	5,777,321	C→G	5.3%	Y546* (TAC→TAG)	betA‑II →	choline dehydrogenase
RA	5,786,757	T→A	8.0%	L57Q (CTG→CAG)	trxC →	thioredoxin
RA	5,786,760	C→A	7.9%	P58Q (CCG→CAG)	trxC →	thioredoxin
RA	5,786,763	T→G	8.1%	L59R (CTG→CGG)	trxC →	thioredoxin
RA	5,786,766	T→A	8.1%	L60Q (CTG→CAG)	trxC →	thioredoxin
RA	5,790,143	A→T	7.6%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	7.4%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	7.2%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,159	A→T	8.2%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,625	A→T	6.1%	intergenic (‑29/+28)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,827,954	C→G	5.2%	intergenic (+156/+43)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,955	A→G	5.2%	intergenic (+157/+42)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,962	A→G	5.2%	intergenic (+164/+35)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,827,967	C→G	5.3%	intergenic (+169/+30)	mtgA → / ← rpoH	monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32
RA	5,875,235	A→G	8.1%	D312D (GAT→GAC)	ilvA‑II ←	threonine deaminase
RA	5,882,699	C→A	11.4%	intergenic (+30/+18)	serA → / ← PP_5156	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein
RA	5,882,700	T→C	11.1%	intergenic (+31/+17)	serA → / ← PP_5156	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein
RA	5,882,701	G→C	10.9%	intergenic (+32/+16)	serA → / ← PP_5156	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein
RA	5,882,702	G→A	11.1%	intergenic (+33/+15)	serA → / ← PP_5156	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase/hypothetical protein
RA	5,883,595	C→G	8.7%	A60G (GCC→GGC)	PP_5157 →	hypothetical protein
RA	5,890,792	A→T	6.3%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	6.3%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,892,752	T→A	6.1%	Q173L (CAA→CTA)	PP_5167 ←	hypothetical protein
RA	5,903,164	G→T	11.1%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	18.8%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,905,973	C→G	5.6%	P276P (CCG→CCC)	spuF ←	spermidine/putrescine ABC transporter ATP binding protein
RA	5,906,640	A→T	9.8%	L54Q (CTG→CAG)	spuF ←	spermidine/putrescine ABC transporter ATP binding protein
RA	5,906,643	A→T	9.8%	L53Q (CTG→CAG)	spuF ←	spermidine/putrescine ABC transporter ATP binding protein
RA	5,909,295	A→T	9.4%	intergenic (‑75/+94)	spuD ← / ← spuC‑II	spermidine/putrescine ABC transporter substrate‑binding protein/polyamine:pyruvate transaminase
RA	5,909,296	A→T	10.6%	intergenic (‑76/+93)	spuD ← / ← spuC‑II	spermidine/putrescine ABC transporter substrate‑binding protein/polyamine:pyruvate transaminase
RA	5,909,297	A→T	10.5%	intergenic (‑77/+92)	spuD ← / ← spuC‑II	spermidine/putrescine ABC transporter substrate‑binding protein/polyamine:pyruvate transaminase
RA	5,940,484	A→C	7.2%	D108A (GAC→GCC)	yhhJ →	translation‑like protein
RA	5,940,487	T→G	7.0%	L109R (CTG→CGG)	yhhJ →	translation‑like protein
RA	5,940,490	T→C	6.5%	L110P (CTG→CCG)	yhhJ →	translation‑like protein
RA	5,940,494	C→A	5.9%	A111A (GCC→GCA)	yhhJ →	translation‑like protein
RA	5,940,497	G→T	5.4%	G112G (GGG→GGT)	yhhJ →	translation‑like protein
RA	5,947,722	T→C	31.1%	K251R (AAG→AGG)	rho ←	transcription termination factor Rho
RA	5,948,205	T→C	15.0%	N90S (AAC→AGC)	rho ←	transcription termination factor Rho
RA	5,948,682	T→A	6.8%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,948,683	T→A	6.8%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,954,923	T→C	10.4%	Q27R (CAG→CGG)	PP_5219 ←	membrane protein
RA	5,954,925	G→A	10.3%	G26G (GGC→GGT)	PP_5219 ←	membrane protein
RA	5,954,931	C→T	10.4%	V24V (GTG→GTA) ‡	PP_5219 ←	membrane protein
RA	5,954,932	A→G	10.4%	V24A (GTG→GCG) ‡	PP_5219 ←	membrane protein
RA	5,961,628	T→A	6.3%	I175N (ATT→AAT)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,273	A→C	5.3%	D390A (GAC→GCC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,276	G→T	5.3%	G391V (GGC→GTC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,974,855	C→T	7.0%	V25V (GTC→GTT)	PP_5727 →	hypothetical protein
RA	5,984,436	T→C	19.7%	intergenic (+32/+57)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,442	G→A	17.0%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,444	T→C	17.8%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,447	G→A	17.3%	intergenic (+43/+46)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	18.1%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,455	G→A	20.5%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,985,761	G→A	8.9%	V10M (GTG→ATG)	PP_5245 →	AraC family transcriptional regulator
RA	5,986,841	T→A	13.2%	intergenic (+121/‑78)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,986,861	C→T	100%	intergenic (+141/‑58)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	15.3%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	16.4%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	17.3%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	19.1%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	17.3%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	16.4%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	17.8%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	18.5%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	18.5%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	19.0%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	21.0%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	21.3%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	19.2%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	19.9%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	19.4%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	21.6%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	23.8%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,989,556	T→C	20.2%	C89C (TGT→TGC)	PP_5247 →	hypothetical protein
RA	5,994,765:1	+G	7.7%	coding (1492/1599 nt)	PP_5251 →	transporter
RA	5,997,189:1	+G	21.1%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,194	Δ1 bp	21.1%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,003,474	C→T	5.6%	V155M (GTG→ATG)	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,004,987	T→G	11.2%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,994	G→C	11.1%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	14.5%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	9.5%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,139:1	+G	22.7%	intergenic (+36/+46)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,143	T→C	18.5%	intergenic (+40/+42)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,144	T→C	20.0%	intergenic (+41/+41)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,149	G→A	17.8%	intergenic (+46/+36)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,009,150	G→A	17.2%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,019,739	G→A	6.9%	R304C (CGT→TGT)	dadA‑II ←	D‑amino acid:quinone oxidoreductase
RA	6,033,775	G→A	5.9%	G33D (GGC→GAC)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,033,782	G→C	7.5%	Q35H (CAG→CAC)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,033,783	G→C	8.6%	V36L (GTG→CTG)	dfp →	bifunctional 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase
RA	6,039,240	G→T	6.3%	intergenic (‑260/+34)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,241	A→C	6.4%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,245	A→G	6.3%	intergenic (‑265/+29)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,060,485	T→G	9.2%	intergenic (+121/+60)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,489	T→C	8.6%	intergenic (+125/+56)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,065,215	C→T	6.5%	A39V (GCC→GTC)	phoB →	two‑component system DNA‑binding response regulator PhoB
RA	6,069,546	A→G	7.6%	V21A (GTG→GCG) ‡	PP_5323 ←	M23/M37 family peptidase
RA	6,069,547	C→A	6.9%	V21L (GTG→TTG) ‡	PP_5323 ←	M23/M37 family peptidase
RA	6,069,551	C→A	7.6%	Q19H (CAG→CAT) ‡	PP_5323 ←	M23/M37 family peptidase
RA	6,069,552	T→G	7.6%	Q19P (CAG→CCG) ‡	PP_5323 ←	M23/M37 family peptidase
RA	6,069,556	T→G	7.2%	S18R (AGC→CGC)	PP_5323 ←	M23/M37 family peptidase
RA	6,069,557	C→T	7.0%	S17S (TCG→TCA)	PP_5323 ←	M23/M37 family peptidase
RA	6,080,988	T→A	13.7%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	14.9%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,094,517	C→A	6.3%	G252C (GGC→TGC)	pycB ←	pyruvate carboxylase subunit B
RA	6,104,759	T→C	6.1%	H567R (CAC→CGC)	PP_5355 ←	sodium/proton antiporter
RA	6,108,695	C→G	7.8%	A315P (GCC→CCC)	PP_5359 ←	CobW/P47K family protein
RA	6,108,702	C→G	8.3%	A312A (GCG→GCC) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,108,703	G→C	7.8%	A312G (GCG→GGG) ‡	PP_5359 ←	CobW/P47K family protein
RA	6,111,188	G→C	7.8%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,128,087	T→C	84.1%	intergenic (‑203/‑719)	PP_5375 ← / → PP_5376	LysR family transcriptional regulator/hypothetical protein
RA	6,141,001	T→C	8.0%	I246T (ATC→ACC)	cusA →	CzcA family RND family copper transporter
RA	6,143,910	A→C	5.8%	intergenic (+149/+63)	cusF → / ← PP_5734	copper efflux protein/hypothetical protein
RA	6,143,915	G→T	5.8%	intergenic (+154/+58)	cusF → / ← PP_5734	copper efflux protein/hypothetical protein
RA	6,143,920	G→T	5.8%	intergenic (+159/+53)	cusF → / ← PP_5734	copper efflux protein/hypothetical protein
RA	6,143,921	A→C	5.8%	intergenic (+160/+52)	cusF → / ← PP_5734	copper efflux protein/hypothetical protein
RA	6,166,180	T→A	5.4%	Q21L (CAG→CTG)	PP_5406 ←	transposase
RA	6,166,186	C→G	5.4%	W19S (TGG→TCG) ‡	PP_5406 ←	transposase
RA	6,166,187	A→G	5.1%	W19R (TGG→CGG) ‡	PP_5406 ←	transposase
RA	6,166,195	C→G	5.3%	R16P (CGG→CCG)	PP_5406 ←	transposase
RA	6,169,588	G→A	6.9%	T236I (ACT→ATT)	PP_5408 ←	hypothetical protein
RA	6,174,708	G→T	6.9%	intergenic (‑70/+49)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,174,709	A→C	8.4%	intergenic (‑71/+48)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171348–172965	176302–172967	3–4955	22 [21]	[20] 23	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176656–178395	181744–178397	3–5089	22 [20]	[21] 23	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	1124485	1124593	109	22 [21]	[20] 22	gcvT‑I	aminomethyltransferase
*	*	÷	NC_002947	2038200	2038402	203	22 [21]	[20] 22	[rffE]	[rffE]
*	*	÷	NC_002947	2837071	2837228	158	23 [21]	[20] 22	sad‑I/PP_2489	NAD+‑dependent succinate semialdehyde dehydrogenase/xenobiotic reductase

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 11719	54 (0.950)	5 (0.090)	3/246	NT	9.2%	coding (617/1104 nt)	dnaN	DNA polymerase III subunit beta
	?	NC_002947	= 11774	48 (0.900)					coding (672/1104 nt)	dnaN	DNA polymerase III subunit beta
*	?	NC_002947	= 27906	47 (0.830)	4 (0.070)	4/250	NT	7.5%	coding (1642/1698 nt)	PP_0024	membrane‑associated metal‑dependent hydrolase
	?	NC_002947	= 27927	53 (0.970)					coding (1621/1698 nt)	PP_0024	membrane‑associated metal‑dependent hydrolase
*	?	NC_002947	90346 =	47 (0.830)	11 (0.210)	11/236	NT	20.3%	intergenic (+21/+101)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
	?	NC_002947	90427 =	44 (0.860)					intergenic (+102/+20)	PP_0079/PP_0080	transcriptional regulator/hypothetical protein
*	?	NC_002947	124868 =	44 (0.780)	4 (0.070)	4/246	NT	8.3%	coding (248/486 nt)	PP_0119	zinc uptake regulation protein Zur
	?	NC_002947	124926 =	47 (0.880)					coding (190/486 nt)	PP_0119	zinc uptake regulation protein Zur
*	?	NC_002947	= 144237	43 (0.760)	3 (0.060)	3/242	NT	6.5%	intergenic (+216/‑530)	PP_0136/gltP	hypothetical protein/glutamate/aspartate‑proton DAACS transporter
	?	NC_002947	= 144275	46 (0.870)					intergenic (+254/‑492)	PP_0136/gltP	hypothetical protein/glutamate/aspartate‑proton DAACS transporter
*	?	NC_002947	= 174906	NA (NA)	4 (0.070)	4/250	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 240218	48 (0.850)	3 (0.060)	3/246	NT	6.3%	coding (513/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
	?	NC_002947	= 240254	44 (0.820)					coding (549/1128 nt)	PP_0188	uroporphyrin‑III C‑methyltransferase
*	?	NC_002947	= 261742	59 (1.040)	4 (0.070)	3/248	NT	6.4%	coding (224/966 nt)	PP_0210	phycobiliprotein
	?	NC_002947	= 261793	60 (1.110)					coding (275/966 nt)	PP_0210	phycobiliprotein
*	?	NC_002947	= 272960	52 (0.920)	3 (0.060)	3/246	NT	5.5%	coding (808/1110 nt)	metNB	methionine ABC transporter ATP‑binding protein
	?	NC_002947	= 273008	54 (1.010)					coding (760/1110 nt)	metNB	methionine ABC transporter ATP‑binding protein
*	?	NC_002947	= 276259	49 (0.860)	3 (0.060)	3/242	NT	6.0%	coding (909/1221 nt)	PP_0223	DszC family monooxygenase
	?	NC_002947	= 276281	48 (0.910)					coding (887/1221 nt)	PP_0223	DszC family monooxygenase
*	?	NC_002947	276298 =	51 (0.900)	6 (0.110)	5/252	NT	11.5%	coding (870/1221 nt)	PP_0223	DszC family monooxygenase
	?	NC_002947	276349 =	43 (0.780)					coding (819/1221 nt)	PP_0223	DszC family monooxygenase
*	?	NC_002947	436350 =	48 (0.850)	5 (0.090)	5/242	NT	10.7%	intergenic (+183/+50)	PP_0357/PP_0358	ACT domain‑containing protein/membrane protein
	?	NC_002947	436383 =	39 (0.740)					intergenic (+216/+17)	PP_0357/PP_0358	ACT domain‑containing protein/membrane protein
*	?	NC_002947	= 475539	44 (0.780)	3 (0.060)	3/250	NT	7.4%	intergenic (‑35/‑170)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
	?	NC_002947	= 475569	33 (0.610)					intergenic (‑65/‑140)	rpsU/tsaD	30S ribosomal protein S21/tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
*	?	NC_002947	478261 =	37 (0.650)	3 (0.070)	3/200	NT	11.0%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478356 =	20 (0.460)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
*	?	NC_002947	486412 =	16 (0.280)	3 (0.060)	3/228	NT	10.2%	intergenic (‑98/+100)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A
	?	NC_002947	486501 =	39 (0.790)					intergenic (‑187/+11)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A
*	?	NC_002947	499204 =	26 (0.460)	3 (0.060)	3/232	NT	11.5%	intergenic (+48/‑248)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499271 =	23 (0.460)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	= 511109	64 (1.130)	4 (0.080)	4/244	NT	5.6%	coding (83/834 nt)	trpC	indole‑3‑glycerol phosphate synthase
	?	NC_002947	= 511145	74 (1.390)					coding (119/834 nt)	trpC	indole‑3‑glycerol phosphate synthase
*	?	NC_002947	550100 =	NA (NA)	3 (0.060)	3/234	NT	10.3%	coding (775/1194 nt)	tufB	elongation factor Tu‑B
	?	NC_002947	= 550096	29 (0.510)					coding (771/1194 nt)	tufB	elongation factor Tu‑B
*	?	NC_002947	= 556449	55 (0.970)	4 (0.080)	4/244	NT	6.9%	coding (51/540 nt)	rplE	50S ribosomal protein L5
	?	NC_002947	= 556455	57 (1.070)					coding (57/540 nt)	rplE	50S ribosomal protein L5
*	?	NC_002947	= 576284	42 (0.740)	3 (0.060)	3/248	NT	7.2%	coding (1321/3069 nt)	fdoG	formate dehydrogenase‑O major subunit
	?	NC_002947	= 576306	37 (0.680)					coding (1343/3069 nt)	fdoG	formate dehydrogenase‑O major subunit
*	?	NC_002947	= 597094	62 (1.090)	4 (0.080)	4/244	NT	6.6%	coding (352/582 nt)	PP_0508	hypothetical protein
	?	NC_002947	= 597160	55 (1.030)					coding (286/582 nt)	PP_0508	hypothetical protein
*	?	NC_002947	611927 =	NA (NA)	9 (0.170)	7/242	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	= 612221	NA (NA)	10 (0.240) +36 bp	6/188	NT	12.6%	intergenic (+152/+65)	PP_0526/dxs	transposase/1‑deoxyxylulose‑5‑phosphate synthase
	?	NC_002947	= 2436665	96 (1.690)					intergenic (+243/‑416)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	614774 =	61 (1.080)	4 (0.080)	4/244	NT	6.6%	coding (473/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	614838 =	56 (1.050)					coding (409/888 nt)	ispA	farnesyl diphosphate synthase
*	?	NC_002947	640393 =	45 (0.790)	3 (0.060)	3/240	NT	6.9%	coding (352/1929 nt)	PP_0551	MORN domain‑containing protein
	?	NC_002947	640437 =	39 (0.750)					coding (308/1929 nt)	PP_0551	MORN domain‑containing protein
*	?	NC_002947	= 652782	38 (0.670)	5 (0.100)	5/220	NT	23.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	655028 =	61 (1.080)	4 (0.070)	4/250	NT	6.8%	coding (1315/1356 nt)	PP_0563	two‑component system response regulator
	?	NC_002947	655064 =	51 (0.940)					coding (1279/1356 nt)	PP_0563	two‑component system response regulator
*	?	NC_002947	726911 =	42 (0.740)	3 (0.060)	3/240	NT	6.3%	intergenic (‑158/+109)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	726968 =	51 (0.980)					intergenic (‑215/+52)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
*	?	NC_002947	776503 =	64 (1.130)	5 (0.090)	5/248	NT	7.4%	coding (609/966 nt)	PP_0668	transmembrane sensor
	?	NC_002947	776535 =	64 (1.180)					coding (641/966 nt)	PP_0668	transmembrane sensor
*	?	NC_002947	786616 =	58 (1.020)	4 (0.080)	4/232	NT	8.0%	intergenic (+38/‑267)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	786676 =	40 (0.790)					intergenic (+98/‑207)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	= 789500	59 (1.040)	3 (0.060)	3/246	NT	5.1%	coding (738/1350 nt)	gdhA	NADP‑dependent glutamate dehydrogenase
	?	NC_002947	= 789524	56 (1.040)					coding (762/1350 nt)	gdhA	NADP‑dependent glutamate dehydrogenase
*	?	NC_002947	= 796564	72 (1.270)	4 (0.070)	4/250	NT	5.3%	coding (105/339 nt)	PP_0681	hypothetical protein
	?	NC_002947	= 796582	75 (1.380)					coding (123/339 nt)	PP_0681	hypothetical protein
*	?	NC_002947	804250 =	65 (1.150)	4 (0.080)	4/244	NT	6.4%	coding (308/462 nt)	PP_0692	hypothetical protein
	?	NC_002947	804292 =	57 (1.070)					coding (350/462 nt)	PP_0692	hypothetical protein
*	?	NC_002947	= 810688	70 (1.240)	4 (0.080)	4/244	NT	5.5%	coding (383/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
	?	NC_002947	= 810709	71 (1.340)					coding (404/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
*	?	NC_002947	816176 =	39 (0.690)	4 (0.070)	4/246	NT	9.0%	coding (125/1158 nt)	PP_0702	MFS transporter
	?	NC_002947	816212 =	44 (0.820)					coding (161/1158 nt)	PP_0702	MFS transporter
*	?	NC_002947	820225 =	64 (1.130)	4 (0.070)	4/246	NT	6.4%	coding (705/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
	?	NC_002947	820257 =	57 (1.060)					coding (737/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
*	?	NC_002947	= 857773	62 (1.090)	6 (0.110)	6/254	NT	9.1%	coding (1051/1443 nt)	phr	deoxyribodipyrimidine photolyase
	?	NC_002947	= 857791	59 (1.070)					coding (1033/1443 nt)	phr	deoxyribodipyrimidine photolyase
*	?	NC_002947	= 893232	45 (0.790)	4 (0.070)	3/246	NT	8.2%	coding (483/2088 nt)	pta	phosphate acetyltransferase
	?	NC_002947	= 893263	47 (0.880)					coding (452/2088 nt)	pta	phosphate acetyltransferase
*	?	NC_002947	= 911203	42 (0.740)	3 (0.060)	3/250	NT	6.6%	coding (1711/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
	?	NC_002947	= 911239	45 (0.830)					coding (1747/2853 nt)	fruB	PTS fructose transporter subunit EI/HPr/IIA
*	?	NC_002947	920583 =	56 (0.990)	4 (0.080)	4/242	NT	6.8%	coding (180/312 nt)	PP_0801	hypothetical protein
	?	NC_002947	920658 =	58 (1.100)					coding (105/312 nt)	PP_0801	hypothetical protein
*	?	NC_002947	931357 =	47 (0.830)	5 (0.090)	5/246	NT	11.1%	coding (14265/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	931394 =	36 (0.670)					coding (14228/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 934031	62 (1.090)	3 (0.060)	3/246	NT	5.1%	coding (11591/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 934100	52 (0.970)					coding (11522/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 959664	39 (0.690)	4 (0.070)	4/246	NT	9.8%	coding (469/540 nt)	PP_5460	membrane protein
	?	NC_002947	= 959675	37 (0.690)					coding (480/540 nt)	PP_5460	membrane protein
*	?	NC_002947	967108 =	52 (0.920)	3 (0.060)	3/240	NT	6.3%	coding (74/297 nt)	PP_0829	hypothetical protein
	?	NC_002947	967158 =	41 (0.780)					coding (124/297 nt)	PP_0829	hypothetical protein
*	?	NC_002947	967850 =	49 (0.860)	5 (0.100)	5/230	NT	10.0%	intergenic (‑29/+139)	PP_0830/PP_0831	acetyltransferase/hypothetical protein
	?	NC_002947	967941 =	47 (0.940)					intergenic (‑120/+48)	PP_0830/PP_0831	acetyltransferase/hypothetical protein
*	?	NC_002947	= 1006304	45 (0.790)	3 (0.060)	3/248	NT	6.3%	coding (1234/2430 nt)	PP_0867	FecA‑like outer membrane receptor
	?	NC_002947	= 1006326	46 (0.850)					coding (1256/2430 nt)	PP_0867	FecA‑like outer membrane receptor
*	?	NC_002947	1010241 =	53 (0.940)	4 (0.070)	4/250	NT	7.3%	coding (95/942 nt)	PP_0870	glycine betaine/carnitine/choline ABC transporter substrate‑binding protein
	?	NC_002947	1010286 =	51 (0.940)					coding (50/942 nt)	PP_0870	glycine betaine/carnitine/choline ABC transporter substrate‑binding protein
*	?	NC_002947	= 1032212	57 (1.010)	4 (0.070)	4/248	NT	6.8%	coding (306/1137 nt)	PP_0889	hypothetical protein
	?	NC_002947	= 1032289	56 (1.040)					coding (383/1137 nt)	PP_0889	hypothetical protein
*	?	NC_002947	1033727 =	65 (1.150)	4 (0.070)	4/252	NT	6.2%	coding (347/582 nt)	PP_0891	hypothetical protein
	?	NC_002947	1033767 =	59 (1.070)					coding (387/582 nt)	PP_0891	hypothetical protein
*	?	NC_002947	= 1042220	35 (0.620)	4 (0.070)	4/246	NT	9.0%	coding (30/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	= 1042247	48 (0.900)					coding (57/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
*	?	NC_002947	= 1048329	35 (0.620)	3 (0.060)	3/244	NT	7.9%	coding (49/3045 nt)	PP_0906	RND family multidrug transporter
	?	NC_002947	= 1048377	37 (0.700)					coding (1/3045 nt)	PP_0906	RND family multidrug transporter
*	?	NC_002947	1055572 =	59 (1.040)	3 (0.050)	3/252	NT	5.3%	coding (260/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	1055610 =	49 (0.890)					coding (222/1332 nt)	PP_0913	hypothetical protein
*	?	NC_002947	1055733 =	43 (0.760)	3 (0.060)	3/248	NT	7.1%	coding (99/1332 nt)	PP_0913	hypothetical protein
	?	NC_002947	1055773 =	37 (0.680)					coding (59/1332 nt)	PP_0913	hypothetical protein
*	?	NC_002947	1074430 =	83 (1.460)	4 (0.070)	3/254	NT	5.3%	coding (426/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A
	?	NC_002947	1074483 =	61 (1.100)					coding (373/1452 nt)	gatA	glutamyl‑tRNA(Gln) amidotransferase subunit A
*	?	NC_002947	= 1101660	67 (1.180)	4 (0.070)	3/250	NT	5.5%	coding (241/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein
	?	NC_002947	= 1101724	72 (1.320)					coding (305/486 nt)	mlaD	phospholipid ABC transporter substrate‑binding protein
*	?	NC_002947	= 1118155	45 (0.790)	3 (0.060)	3/250	NT	6.4%	coding (126/366 nt)	PP_0978	hypothetical protein
	?	NC_002947	= 1118189	45 (0.830)					coding (92/366 nt)	PP_0978	hypothetical protein
*	?	NC_002947	1175677 =	47 (0.830)	3 (0.060)	3/250	NT	6.0%	coding (108/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
	?	NC_002947	1175715 =	48 (0.880)					coding (146/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
*	?	NC_002947	= 1181587	51 (0.900)	4 (0.070)	4/250	NT	7.9%	coding (640/1407 nt)	cumA	multicopper oxidase
	?	NC_002947	= 1181632	44 (0.810)					coding (685/1407 nt)	cumA	multicopper oxidase
*	?	NC_002947	= 1221777	59 (1.040)	8 (0.150)	7/248	NT	11.9%	coding (1433/1908 nt)	PP_1067	sensor histidine kinase
	?	NC_002947	= 1221820	62 (1.150)					coding (1390/1908 nt)	PP_1067	sensor histidine kinase
*	?	NC_002947	1225841 =	48 (0.850)	3 (0.060)	3/248	NT	6.0%	coding (650/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
	?	NC_002947	1225900 =	48 (0.890)					coding (591/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
*	?	NC_002947	1235874 =	49 (0.860)	3 (0.060)	3/250	NT	6.1%	coding (315/852 nt)	glpF	aquaglyceroporin
	?	NC_002947	1235912 =	46 (0.840)					coding (277/852 nt)	glpF	aquaglyceroporin
*	?	NC_002947	1294939 =	66 (1.160)	4 (0.070)	4/248	NT	6.0%	coding (420/465 nt)	slyB	outer membrane lipoprotein
	?	NC_002947	1294983 =	63 (1.170)					coding (464/465 nt)	slyB	outer membrane lipoprotein
*	?	NC_002947	= 1296609	3 (0.050)	4 (0.110) +48 bp	8/164	NT	18.0%	intergenic (‑362/‑204)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	5545626 =	55 (0.970)					intergenic (‑766/+111)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	1296784 =	NA (NA)	7 (0.130)	5/246	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1296790	NA (NA)	4 (0.070)	4/246	NT	NA	intergenic (‑543/‑23)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	= 1296814	NA (NA)					coding (2/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1297202	NA (NA)	5 (0.090)	5/248	NT	NA	coding (390/1329 nt)	PP_1133	transposase
	?	NC_002947	= 1297219	NA (NA)					coding (407/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1298275	NA (NA)	10 (0.180)	10/250	NT	NA	intergenic (+134/+295)	PP_1133/PP_1134	transposase/hypothetical protein
	?	NC_002947	= 1298301	NA (NA)					intergenic (+160/+269)	PP_1133/PP_1134	transposase/hypothetical protein
*	?	NC_002947	= 1311719	44 (0.780)	4 (0.070) +AC	4/256	NT	8.9%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	5594111 =	39 (0.690)					intergenic (‑58/+87)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	1330937 =	NA (NA)	5 (0.090)	5/250	NT	NA	coding (162/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	1330981 =	NA (NA)					coding (206/1644 nt)	PP_1157	acetolactate synthase
*	?	NC_002947	= 1343386	40 (0.710)	3 (0.060)	3/246	NT	7.1%	coding (166/1281 nt)	PP_1167	TRAP dicarboxylate transporter subunit DctM
	?	NC_002947	= 1343408	41 (0.760)					coding (144/1281 nt)	PP_1167	TRAP dicarboxylate transporter subunit DctM
*	?	NC_002947	= 1362407	58 (1.020)	4 (0.080)	4/244	NT	6.8%	coding (797/1347 nt)	phoQ	sensor protein
	?	NC_002947	= 1362436	55 (1.030)					coding (826/1347 nt)	phoQ	sensor protein
*	?	NC_002947	1407450 =	49 (0.860)	6 (0.110)	5/248	NT	11.6%	intergenic (‑350/‑98)	puuP/PP_1230	putrescine permease/hypothetical protein
	?	NC_002947	1407469 =	45 (0.830)					intergenic (‑369/‑79)	puuP/PP_1230	putrescine permease/hypothetical protein
*	?	NC_002947	1441690 =	NA (NA)	6 (0.140) +30 bp	3/200	NT	6.1%	intergenic (+34/+398)	PP_1260/ghrB	transposase/2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
	?	NC_002947	= 2301586	121 (2.130)					intergenic (‑230/‑101)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	1499507 =	28 (0.490)	12 (0.230)	9/236	NT	21.7%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	61 (1.190)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 1532482	49 (0.860)	4 (0.070)	4/250	NT	7.8%	coding (493/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	= 1532501	47 (0.860)					coding (512/2820 nt)	secA	protein translocase subunit SecA
*	?	NC_002947	1562323 =	59 (1.040)	4 (0.070)	3/248	NT	6.7%	coding (65/1476 nt)	PP_1372	hypothetical protein
	?	NC_002947	1562361 =	56 (1.040)					coding (103/1476 nt)	PP_1372	hypothetical protein
*	?	NC_002947	= 1579919	47 (0.830)	4 (0.080)	4/242	NT	8.3%	coding (1478/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	= 1579940	45 (0.850)					coding (1457/3153 nt)	ttgB	efflux pump membrane protein TtgB
*	?	NC_002947	= 1591794	60 (1.060)	4 (0.070)	4/246	NT	6.5%	coding (100/921 nt)	PP_1395	AraC family transcriptional regulator
	?	NC_002947	= 1591834	58 (1.080)					coding (60/921 nt)	PP_1395	AraC family transcriptional regulator
*	?	NC_002947	1647433 =	55 (0.970)	3 (0.060)	3/248	NT	6.0%	coding (1289/1335 nt)	oprB‑II	carbohydrate‑selective porin
	?	NC_002947	1647473 =	42 (0.780)					coding (1249/1335 nt)	oprB‑II	carbohydrate‑selective porin
*	?	NC_002947	= 1654925	55 (0.970)	4 (0.070)	4/248	NT	6.8%	coding (1844/4527 nt)	PP_1449	hypothetical protein
	?	NC_002947	= 1654954	58 (1.070)					coding (1815/4527 nt)	PP_1449	hypothetical protein
*	?	NC_002947	1670777 =	61 (1.080)	4 (0.070)	4/246	NT	5.9%	coding (106/408 nt)	PP_1466	acyl‑CoA thioesterase
	?	NC_002947	1670841 =	69 (1.290)					coding (170/408 nt)	PP_1466	acyl‑CoA thioesterase
*	?	NC_002947	1686020 =	53 (0.940)	4 (0.080)	4/242	NT	8.1%	coding (759/1425 nt)	patD	medium chain aldehyde dehydrogenase
	?	NC_002947	1686099 =	42 (0.800)					coding (680/1425 nt)	patD	medium chain aldehyde dehydrogenase
*	?	NC_002947	= 1717760	39 (0.690)	3 (0.060)	3/240	NT	6.8%	coding (459/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
	?	NC_002947	= 1717783	46 (0.880)					coding (482/777 nt)	rsmJ	ribosomal RNA small subunit methyltransferase J
*	?	NC_002947	1729663 =	60 (1.060)	4 (0.070)	3/248	NT	6.0%	coding (274/813 nt)	rlmAA	23S rRNA (guanine(745)‑N(1))‑methyltransferase
	?	NC_002947	1729727 =	69 (1.280)					coding (210/813 nt)	rlmAA	23S rRNA (guanine(745)‑N(1))‑methyltransferase
*	?	NC_002947	1731163 =	28 (0.490)	6 (0.140)	5/204	NT	17.7%	intergenic (‑76/+115)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1731255 =	34 (0.770)					intergenic (‑168/+23)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1738703 =	58 (1.020)	4 (0.070)	4/248	NT	6.8%	coding (490/1107 nt)	PP_1532	putative Phage integrase
	?	NC_002947	1738757 =	55 (1.020)					coding (436/1107 nt)	PP_1532	putative Phage integrase
*	?	NC_002947	= 1747697	64 (1.130)	5 (0.090)	5/248	NT	8.3%	intergenic (‑189/+342)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 1747758	50 (0.930)					intergenic (‑250/+281)	PP_5473/PP_5474	LuxR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 1748247	43 (0.760)	3 (0.060)	3/242	NT	6.7%	coding (421/438 nt)	PP_1548	hypothetical protein
	?	NC_002947	= 1748274	43 (0.820)					coding (394/438 nt)	PP_1548	hypothetical protein
*	?	NC_002947	= 1799873	53 (0.940)	5 (0.110)	5/214	NT	9.1%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799915	56 (1.200)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	1800376 =	64 (1.130)	4 (0.070)	4/246	NT	6.2%	coding (360/3525 nt)	dnaEA	DNA polymerase III subunit alpha
	?	NC_002947	1800454 =	61 (1.140)					coding (438/3525 nt)	dnaEA	DNA polymerase III subunit alpha
*	?	NC_002947	= 1816168	54 (0.950)	7 (0.130)	6/250	NT	11.0%	coding (40/750 nt)	surE	5'‑nucleotidase SurE
	?	NC_002947	= 1816211	61 (1.120)					coding (83/750 nt)	surE	5'‑nucleotidase SurE
*	?	NC_002947	= 1821299	NA (NA)	4 (0.070)	3/246	NT	NA	coding (1062/1422 nt)	PP_1624	group II intron‑encoding maturase
	?	NC_002947	= 2070624	NA (NA)					coding (998/1422 nt)	PP_1846	group II intron‑encoding maturase
*	?	NC_002947	1841469 =	78 (1.380)	4 (0.080)	4/244	NT	5.3%	coding (534/1029 nt)	ldhA	D‑lactate dehydrogenase
	?	NC_002947	1841511 =	71 (1.340)					coding (492/1029 nt)	ldhA	D‑lactate dehydrogenase
*	?	NC_002947	= 1871240	46 (0.810)	6 (0.110)	5/248	NT	11.6%	coding (514/993 nt)	cobC	adenosylcobinamide‑phosphate synthase subunit beta
	?	NC_002947	= 1871269	48 (0.890)					coding (543/993 nt)	cobC	adenosylcobinamide‑phosphate synthase subunit beta
*	?	NC_002947	= 1877743	56 (0.990)	4 (0.070)	4/246	NT	7.4%	coding (314/405 nt)	PP_1683	MarR family transcriptional regulator
	?	NC_002947	= 1877784	47 (0.880)					coding (355/405 nt)	PP_1683	MarR family transcriptional regulator
*	?	NC_002947	= 1878358	46 (0.810)	3 (0.060)	3/250	NT	6.7%	coding (480/1221 nt)	PP_1684	transporter
	?	NC_002947	= 1878392	40 (0.730)					coding (514/1221 nt)	PP_1684	transporter
*	?	NC_002947	1902661 =	47 (0.830)	3 (0.060)	3/248	NT	5.5%	coding (3212/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1902710 =	59 (1.090)					coding (3261/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1904184 =	53 (0.940)	3 (0.060)	3/250	NT	5.4%	coding (439/2553 nt)	nirB	nitrite reductase large subunit
	?	NC_002947	1904226 =	55 (1.010)					coding (481/2553 nt)	nirB	nitrite reductase large subunit
*	?	NC_002947	1906682 =	31 (0.550)	8 (0.180)	6/208	NT	25.1%	intergenic (+22/+106)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	1906776 =	23 (0.510)					intergenic (+116/+12)	nirD/PP_1707	nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	1913196 =	58 (1.020)	4 (0.070)	4/246	NT	6.7%	coding (276/1410 nt)	PP_1712	hypothetical protein
	?	NC_002947	1913251 =	56 (1.040)					coding (221/1410 nt)	PP_1712	hypothetical protein
*	?	NC_002947	= 1916253	65 (1.150)	4 (0.070)	4/250	NT	5.9%	coding (393/438 nt)	PP_1715	hypothetical protein
	?	NC_002947	= 1916271	64 (1.170)					coding (411/438 nt)	PP_1715	hypothetical protein
*	?	NC_002947	1968031 =	83 (1.460)	5 (0.100)	5/234	NT	6.9%	intergenic (‑42/+116)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
	?	NC_002947	1968116 =	60 (1.180)					intergenic (‑127/+31)	yciK/gph	putative oxidoreductase/phosphoglycolate phosphatase
*	?	NC_002947	2008567 =	72 (1.270)	4 (0.080)	4/242	NT	6.6%	coding (396/1605 nt)	PP_1791	aldolase/synthase
	?	NC_002947	2008626 =	47 (0.890)					coding (337/1605 nt)	PP_1791	aldolase/synthase
*	?	NC_002947	= 2024359	39 (0.690)	3 (0.060)	3/246	NT	7.1%	coding (498/1143 nt)	wbpY	glycosyl transferase WbpY
	?	NC_002947	= 2024384	42 (0.780)					coding (523/1143 nt)	wbpY	glycosyl transferase WbpY
*	?	NC_002947	2032810 =	NA (NA)	3 (0.060)	3/248	NT	19.5%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032835 =	13 (0.230)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	= 2048810	60 (1.060)	4 (0.080)	4/226	NT	7.1%	intergenic (+49/+90)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	= 2048867	52 (1.060)					intergenic (+106/+33)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
*	?	NC_002947	= 2050595	22 (0.390)	6 (0.150)	6/186	NT	22.4%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050631	26 (0.640)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2062881	42 (0.740)	5 (0.090)	4/244	NT	10.8%	coding (1796/2058 nt)	PP_1838	membrane protein
	?	NC_002947	= 2062912	43 (0.810)					coding (1827/2058 nt)	PP_1838	membrane protein
*	?	NC_002947	2086080 =	NA (NA)	3 (0.060)	3/250	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	4 (0.080)	4/244	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2096753 =	57 (1.010)	5 (0.090)	3/246	NT	9.4%	coding (109/396 nt)	msrB	peptide methionine sulfoxide reductase MsrB
	?	NC_002947	2096809 =	42 (0.780)					coding (165/396 nt)	msrB	peptide methionine sulfoxide reductase MsrB
*	?	NC_002947	2130390 =	57 (1.010)	3 (0.060)	3/250	NT	5.6%	coding (1809/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130432 =	47 (0.860)					coding (1767/2496 nt)	fimD	type I pili subunit FimD
*	?	NC_002947	2138293 =	40 (0.710)	4 (0.070)	4/252	NT	7.9%	coding (396/933 nt)	yadG	ABC transporter ATP‑binding protein
	?	NC_002947	2138370 =	55 (1.000)					coding (473/933 nt)	yadG	ABC transporter ATP‑binding protein
*	?	NC_002947	= 2145216	54 (0.950)	5 (0.090)	5/254	NT	9.5%	coding (334/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase
	?	NC_002947	= 2145271	42 (0.760)					coding (389/765 nt)	kdsB	3‑deoxy‑manno‑octulosonate cytidylyltransferase
*	?	NC_002947	2194094 =	50 (0.880)	3 (0.060)	3/250	NT	5.5%	coding (1571/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer
	?	NC_002947	2194125 =	55 (1.010)					coding (1540/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer
*	?	NC_002947	2194395 =	49 (0.860)	5 (0.090)	5/256	NT	9.0%	coding (1270/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer
	?	NC_002947	2194436 =	53 (0.950)					coding (1229/2151 nt)	PP_1940	methyl‑accepting chemotaxis transducer
*	?	NC_002947	2211507 =	45 (0.790)	4 (0.070)	4/250	NT	8.7%	coding (898/1167 nt)	PP_1954	hypothetical protein
	?	NC_002947	2211544 =	41 (0.750)					coding (935/1167 nt)	PP_1954	hypothetical protein
*	?	NC_002947	= 2258072	NA (NA)	7 (0.130)	5/252	NT	NA	intergenic (+127/‑265)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2258116	NA (NA)					intergenic (+171/‑221)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	= 2295773	102 (1.800)	8 (0.150)	5/250	NT	7.3%	intergenic (+19/+114)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 2295860	104 (1.910)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	2301453 =	0 (0.000)	78 (1.410)	62/254	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	74 (1.330)	56/256	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2316582	77 (1.360)	5 (0.090)	4/246	NT	6.1%	coding (386/1548 nt)	PP_2038	long‑chain‑fatty‑acid‑‑CoA ligase
	?	NC_002947	= 2316620	82 (1.530)					coding (424/1548 nt)	PP_2038	long‑chain‑fatty‑acid‑‑CoA ligase
*	?	NC_002947	2334268 =	91 (1.610)	8 (0.150)	8/246	NT	7.8%	intergenic (+15/+65)	fadA/PP_2052	3‑ketoacyl‑CoA thiolase/bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
	?	NC_002947	2334333 =	102 (1.900)					coding (2124/2124 nt)	PP_2052	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
*	?	NC_002947	2344137 =	84 (1.480)	5 (0.100)	5/240	NT	5.8%	coding (169/456 nt)	soxR	DNA‑binding transcriptional regulator
	?	NC_002947	2344209 =	86 (1.640)					coding (97/456 nt)	soxR	DNA‑binding transcriptional regulator
*	?	NC_002947	= 2412941	109 (1.920)	9 (0.170)	6/244	NT	9.2%	intergenic (+205/‑216)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	= 2528972	76 (1.430)					intergenic (+99/‑308)	PP_2217/PP_2218	enoyl‑CoA hydratase/transposase
*	?	NC_002947	2414822 =	91 (1.610)	9 (0.160)	6/256	NT	9.1%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	= 4908082	NA (NA)					intergenic (‑58/‑224)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	2427597 =	59 (1.040)	4 (0.070)	4/248	NT	6.7%	coding (131/513 nt)	PP_5503	CheA signal transduction histidine kinase
	?	NC_002947	2427641 =	56 (1.040)					coding (87/513 nt)	PP_5503	CheA signal transduction histidine kinase
*	?	NC_002947	2453996 =	86 (1.520)	5 (0.090)	5/248	NT	5.6%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	88 (1.630)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	2567443 =	65 (1.150)	6 (0.110)	5/246	NT	9.2%	coding (485/879 nt)	PP_2250	LysR family transcriptional regulator
	?	NC_002947	2567519 =	57 (1.060)					coding (409/879 nt)	PP_2250	LysR family transcriptional regulator
*	?	NC_002947	2580903 =	57 (1.010)	3 (0.060)	3/246	NT	5.4%	coding (125/867 nt)	PP_2262	sugar ABC transporter permease
	?	NC_002947	2580939 =	52 (0.970)					coding (161/867 nt)	PP_2262	sugar ABC transporter permease
*	?	NC_002947	= 2608453	55 (0.970)	4 (0.070)	3/248	NT	7.2%	coding (164/561 nt)	PP_2285	hypothetical protein
	?	NC_002947	= 2608480	51 (0.940)					coding (191/561 nt)	PP_2285	hypothetical protein
*	?	NC_002947	= 2615294	45 (0.790)	4 (0.070)	4/250	NT	8.3%	coding (4233/4710 nt)	PP_2287	internal core protein
	?	NC_002947	= 2615347	45 (0.830)					coding (4286/4710 nt)	PP_2287	internal core protein
*	?	NC_002947	2656526 =	34 (0.600)	3 (0.060)	3/250	NT	9.4%	coding (1086/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
	?	NC_002947	2656578 =	25 (0.460)					coding (1034/1341 nt)	pabB	aminodeoxychorismate synthase/para‑aminobenzoate synthase multi‑enzyme complex
*	?	NC_002947	2658488 =	66 (1.160)	6 (0.110)	6/252	NT	9.3%	coding (313/981 nt)	PP_2330	hypothetical protein
	?	NC_002947	2658580 =	53 (0.970)					coding (221/981 nt)	PP_2330	hypothetical protein
*	?	NC_002947	2669969 =	49 (0.860)	10 (0.180)	7/252	NT	18.3%	coding (2349/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2670006 =	42 (0.760)					coding (2312/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	= 2670755	60 (1.060)	6 (0.110)	5/250	NT	9.6%	coding (1563/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	= 2670792	55 (1.010)					coding (1526/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	= 2730749	44 (0.780)	5 (0.090)	5/244	NT	10.8%	coding (86/2361 nt)	polB	DNA polymerase II
	?	NC_002947	= 2730786	41 (0.770)					coding (123/2361 nt)	polB	DNA polymerase II
*	?	NC_002947	= 2747813	44 (0.780)	3 (0.060)	3/250	NT	6.6%	coding (693/741 nt)	PP_2403	chemotaxis protein CheY
	?	NC_002947	= 2747839	42 (0.770)					coding (667/741 nt)	PP_2403	chemotaxis protein CheY
*	?	NC_002947	2775128 =	50 (0.880)	4 (0.070)	4/246	NT	7.7%	coding (384/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2775164 =	49 (0.910)					coding (348/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	2814594 =	59 (1.040)	3 (0.060)	3/248	NT	5.6%	coding (731/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
	?	NC_002947	2814654 =	44 (0.810)					coding (791/2382 nt)	pheT	phenylalanine‑‑tRNA ligase subunit beta
*	?	NC_002947	2860991 =	48 (0.850)	5 (0.090)	4/250	NT	9.2%	coding (341/1086 nt)	gllD	4‑oxalomesaconate tautomerase
	?	NC_002947	2861049 =	53 (0.970)					coding (283/1086 nt)	gllD	4‑oxalomesaconate tautomerase
*	?	NC_002947	2901425 =	41 (0.720)	3 (0.060)	3/244	NT	7.4%	coding (507/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901477 =	37 (0.700)					coding (559/1908 nt)	quiC	3‑dehydroshikimate dehydratase
*	?	NC_002947	2943820 =	36 (0.640)	4 (0.070)	4/246	NT	8.8%	coding (249/1641 nt)	PP_2577	paraquat‑inducible protein B
	?	NC_002947	2943854 =	49 (0.910)					coding (283/1641 nt)	PP_2577	paraquat‑inducible protein B
*	?	NC_002947	2961033 =	44 (0.780)	7 (0.130)	7/250	NT	14.5%	coding (159/2316 nt)	PP_2590	ferric siderophore receptor
	?	NC_002947	2961073 =	40 (0.730)					coding (119/2316 nt)	PP_2590	ferric siderophore receptor
*	?	NC_002947	2964440 =	57 (1.010)	4 (0.070)	4/248	NT	7.5%	coding (430/942 nt)	fatD	ferric anguibactin transport system permease FatD
	?	NC_002947	2964501 =	44 (0.810)					coding (369/942 nt)	fatD	ferric anguibactin transport system permease FatD
*	?	NC_002947	= 2970920	58 (1.020)	4 (0.070)	4/252	NT	6.4%	coding (1259/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	= 2970982	60 (1.090)					coding (1321/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
*	?	NC_002947	2982157 =	46 (0.810)	4 (0.070)	4/250	NT	7.4%	coding (208/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2982210 =	56 (1.030)					coding (155/1734 nt)	PP_2607	hypothetical protein
*	?	NC_002947	2992621 =	48 (0.850)	4 (0.070)	4/248	NT	8.3%	coding (452/870 nt)	PP_2616	hypothetical protein
	?	NC_002947	2992664 =	43 (0.800)					coding (409/870 nt)	PP_2616	hypothetical protein
*	?	NC_002947	3066171 =	48 (0.850)	4 (0.070)	4/248	NT	7.6%	coding (305/924 nt)	PP_2678	hydrolase
	?	NC_002947	3066244 =	51 (0.940)					coding (378/924 nt)	PP_2678	hydrolase
*	?	NC_002947	= 3078702	43 (0.760)	3 (0.060)	3/246	NT	7.5%	coding (564/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3078728	33 (0.620)					coding (538/1410 nt)	PP_2688	hypothetical protein
*	?	NC_002947	3092861 =	43 (0.760)	3 (0.060)	3/246	NT	6.6%	coding (822/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	3092943 =	44 (0.820)					coding (904/939 nt)	PP_2701	LysR family transcriptional regulator
*	?	NC_002947	3143950 =	46 (0.810)	3 (0.060)	3/246	NT	6.5%	coding (874/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
	?	NC_002947	3143991 =	43 (0.800)					coding (915/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
*	?	NC_002947	3193191 =	32 (0.560)	3 (0.060)	3/250	NT	7.9%	coding (270/1425 nt)	prr	gamma‑aminobutyraldehyde dehydrogenase
	?	NC_002947	3193230 =	39 (0.720)					coding (231/1425 nt)	prr	gamma‑aminobutyraldehyde dehydrogenase
*	?	NC_002947	= 3214224	49 (0.860)	3 (0.060)	3/248	NT	5.9%	coding (139/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	= 3214263	49 (0.910)					coding (178/3129 nt)	mexD	multidrug RND transporter MexD
*	?	NC_002947	3289791 =	58 (1.020)	3 (0.060)	3/246	NT	5.4%	coding (823/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	3289839 =	50 (0.930)					coding (871/1752 nt)	PP_2892	hypothetical protein
*	?	NC_002947	= 3379338	51 (0.900)	6 (0.110)	6/242	NT	10.8%	coding (811/972 nt)	tnpS	cointegrate resolution protein S
	?	NC_002947	= 3379373	52 (0.990)					coding (776/972 nt)	tnpS	cointegrate resolution protein S
*	?	NC_002947	3451460 =	49 (0.860)	4 (0.070)	4/246	NT	7.5%	coding (1987/2478 nt)	PP_3069	outer membrane autotransporter
	?	NC_002947	3451513 =	52 (0.970)					coding (1934/2478 nt)	PP_3069	outer membrane autotransporter
*	?	NC_002947	3456775 =	54 (0.950)	3 (0.060)	3/250	NT	5.3%	coding (514/771 nt)	hbdH	3‑hydroxybutyrate dehydrogenase
	?	NC_002947	3456819 =	55 (1.010)					coding (470/771 nt)	hbdH	3‑hydroxybutyrate dehydrogenase
*	?	NC_002947	= 3487111	50 (0.880)	3 (0.060)	3/246	NT	5.9%	coding (900/1344 nt)	PP_3093	hypothetical protein
	?	NC_002947	= 3487143	48 (0.900)					coding (868/1344 nt)	PP_3093	hypothetical protein
*	?	NC_002947	3542038 =	62 (1.090)	5 (0.090)	5/246	NT	8.8%	coding (685/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	3542072 =	45 (0.840)					coding (651/966 nt)	galE	UDP‑glucose 4‑epimerase
*	?	NC_002947	3552999 =	54 (0.950)	3 (0.060)	3/248	NT	5.5%	coding (656/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	3553043 =	52 (0.960)					coding (700/978 nt)	PP_3137	group 2 family glycosyl transferase
*	?	NC_002947	3572273 =	55 (0.970)	3 (0.060)	3/246	NT	6.2%	coding (309/444 nt)	PP_3153	hypothetical protein
	?	NC_002947	3572311 =	39 (0.730)					coding (347/444 nt)	PP_3153	hypothetical protein
*	?	NC_002947	3622943 =	54 (0.950)	4 (0.070)	4/250	NT	7.0%	coding (1110/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3623009 =	55 (1.010)					coding (1044/1344 nt)	PP_3194	hypothetical protein
*	?	NC_002947	3658098 =	52 (0.920)	8 (0.150)	7/246	NT	14.3%	coding (152/951 nt)	PP_3222	ABC transporter permease
	?	NC_002947	3658157 =	47 (0.880)					coding (93/951 nt)	PP_3222	ABC transporter permease
*	?	NC_002947	= 3678438	56 (0.990)	3 (0.060)	3/250	NT	5.2%	coding (1441/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	= 3678469	56 (1.030)					coding (1472/1569 nt)	PP_3242	GGDEF domain‑containing protein
*	?	NC_002947	3691992 =	64 (1.130)	4 (0.070)	4/250	NT	6.4%	coding (594/756 nt)	PP_3258	hypothetical protein
	?	NC_002947	3692039 =	56 (1.030)					coding (547/756 nt)	PP_3258	hypothetical protein
*	?	NC_002947	= 3709481	64 (1.130)	4 (0.080)	4/244	NT	6.2%	coding (916/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit
	?	NC_002947	= 3709517	60 (1.130)					coding (880/1077 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase reductase subunit
*	?	NC_002947	3729852 =	28 (0.490)	4 (0.070)	4/246	NT	12.6%	coding (341/435 nt)	PP_3296	putative transporter
	?	NC_002947	3729887 =	29 (0.540)					coding (376/435 nt)	PP_3296	putative transporter
*	?	NC_002947	3733177 =	92 (1.620)	5 (0.090)	5/252	NT	5.8%	coding (64/1464 nt)	PP_3299	lipoprotein
	?	NC_002947	3733205 =	74 (1.350)					coding (36/1464 nt)	PP_3299	lipoprotein
*	?	NC_002947	= 3747352	48 (0.850)	3 (0.060)	3/242	NT	6.0%	coding (1409/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	= 3747393	50 (0.950)					coding (1368/1746 nt)	kefB‑II	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	= 3784426	45 (0.790)	4 (0.070)	3/246	NT	8.8%	coding (750/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	= 3784484	40 (0.750)					coding (808/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
*	?	NC_002947	3803565 =	56 (0.990)	7 (0.130)	4/250	NT	12.3%	coding (352/3048 nt)	PP_3361	aminotransferase
	?	NC_002947	3803631 =	46 (0.840)					coding (286/3048 nt)	PP_3361	aminotransferase
*	?	NC_002947	= 3838086	50 (0.880)	3 (0.060)	3/248	NT	5.8%	coding (1681/2673 nt)	PP_3388	hypothetical protein
	?	NC_002947	= 3838149	49 (0.910)					coding (1744/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 3852476	48 (0.850)	6 (0.110)	5/242	NT	10.9%	intergenic (+22/‑137)	PP_3399/alkB	minor curlin subunit CsgB/alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
	?	NC_002947	= 3852493	53 (1.010)					intergenic (+39/‑120)	PP_3399/alkB	minor curlin subunit CsgB/alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
*	?	NC_002947	= 3867966	61 (1.080)	3 (0.060)	3/246	NT	5.0%	coding (232/1353 nt)	gntT	D‑gluconate transporter
	?	NC_002947	= 3867994	56 (1.040)					coding (260/1353 nt)	gntT	D‑gluconate transporter
*	?	NC_002947	3891041 =	72 (1.270)	5 (0.090)	5/246	NT	6.9%	coding (25/1587 nt)	PP_3435	hypothetical protein
	?	NC_002947	3891104 =	67 (1.250)					coding (88/1587 nt)	PP_3435	hypothetical protein
*	?	NC_002947	3910052 =	59 (1.040)	4 (0.070)	3/248	NT	6.9%	coding (2001/2640 nt)	PP_3450	TPR repeat‑containing protein
	?	NC_002947	3910097 =	52 (0.960)					coding (2046/2640 nt)	PP_3450	TPR repeat‑containing protein
*	?	NC_002947	= 3936535	53 (0.940)	3 (0.060)	3/246	NT	5.9%	coding (321/969 nt)	PP_3469	hypothetical protein
	?	NC_002947	= 3936553	46 (0.860)					coding (339/969 nt)	PP_3469	hypothetical protein
*	?	NC_002947	3941032 =	48 (0.850)	3 (0.060)	3/250	NT	5.9%	coding (168/531 nt)	PP_3475	type II secretion system pseudopilin PulG‑like signal peptide protein
	?	NC_002947	3941110 =	49 (0.900)					coding (90/531 nt)	PP_3475	type II secretion system pseudopilin PulG‑like signal peptide protein
*	?	NC_002947	= 3950524	52 (0.920)	3 (0.060)	3/246	NT	5.6%	coding (513/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3950567	52 (0.970)					coding (470/1491 nt)	PP_3486	cytochrome c
*	?	NC_002947	3956843 =	51 (0.900)	4 (0.070)	4/250	NT	7.7%	coding (3542/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3956902 =	47 (0.860)					coding (3483/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
*	?	NC_002947	= 3990976	49 (0.860)	5 (0.090)	5/246	NT	12.6%	coding (651/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	= 3991042	23 (0.430)					coding (585/894 nt)	PP_3517	hypothetical protein
*	?	NC_002947	4020885 =	49 (0.860)	3 (0.060)	3/250	NT	6.4%	coding (1596/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4020924 =	40 (0.730)					coding (1635/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4031446	44 (0.780)	3 (0.060)	3/246	NT	6.5%	coding (1109/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4031526	45 (0.840)					coding (1189/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	4032898 =	73 (1.290)	7 (0.130)	7/246	NT	9.5%	coding (536/1008 nt)	PP_3555	transmembrane sensor
	?	NC_002947	4032932 =	64 (1.190)					coding (570/1008 nt)	PP_3555	transmembrane sensor
*	?	NC_002947	= 4062405	54 (0.950)	6 (0.110)	6/246	NT	9.2%	coding (1934/2088 nt)	PP_3581	membrane protein
	?	NC_002947	= 4062441	68 (1.270)					coding (1898/2088 nt)	PP_3581	membrane protein
*	?	NC_002947	4067421 =	52 (0.920)	3 (0.050)	3/252	NT	5.7%	coding (1643/3108 nt)	mdtC	multidrug transporter membrane protein
	?	NC_002947	4067453 =	48 (0.870)					coding (1611/3108 nt)	mdtC	multidrug transporter membrane protein
*	?	NC_002947	4146453 =	64 (1.130)	3 (0.060)	3/244	NT	5.3%	coding (536/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4146516 =	47 (0.880)					coding (599/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	4147192 =	48 (0.850)	3 (0.050)	3/252	NT	6.3%	coding (1275/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4147238 =	42 (0.760)					coding (1321/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4166027	48 (0.850)	4 (0.070)	4/250	NT	8.6%	coding (75/1335 nt)	PP_3666	MHS family metabolite MFS transporter
	?	NC_002947	= 4166061	39 (0.720)					coding (41/1335 nt)	PP_3666	MHS family metabolite MFS transporter
*	?	NC_002947	= 4173137	33 (0.580)	3 (0.060)	3/246	NT	8.4%	coding (771/825 nt)	PP_3671	aldo/keto reductase family oxidoreductase
	?	NC_002947	= 4173157	34 (0.630)					coding (791/825 nt)	PP_3671	aldo/keto reductase family oxidoreductase
*	?	NC_002947	4173583 =	55 (0.970)	3 (0.060)	3/242	NT	5.6%	coding (196/573 nt)	PP_3672	hypothetical protein
	?	NC_002947	4173634 =	50 (0.950)					coding (145/573 nt)	PP_3672	hypothetical protein
*	?	NC_002947	4233272 =	62 (1.090)	3 (0.060)	3/244	NT	5.2%	coding (411/462 nt)	PP_5626	repressor‑like DNA‑binding domain‑containing protein
	?	NC_002947	4233307 =	52 (0.980)					coding (446/462 nt)	PP_5626	repressor‑like DNA‑binding domain‑containing protein
*	?	NC_002947	= 4233848	57 (1.010)	4 (0.070)	4/248	NT	6.9%	coding (1217/1512 nt)	PP_3711	diguanylate cyclase
	?	NC_002947	= 4233885	53 (0.980)					coding (1180/1512 nt)	PP_3711	diguanylate cyclase
*	?	NC_002947	4266531 =	55 (0.970)	8 (0.160)	6/226	NT	15.0%	intergenic (‑73/+73)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266602 =	43 (0.870)					intergenic (‑144/+2)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	= 4267678	40 (0.710)	3 (0.060)	3/244	NT	6.6%	coding (180/1254 nt)	galP‑IV	porin‑like protein
	?	NC_002947	= 4267712	48 (0.900)					coding (146/1254 nt)	galP‑IV	porin‑like protein
*	?	NC_002947	4279517 =	42 (0.740)	3 (0.060)	3/250	NT	7.2%	coding (717/1434 nt)	PP_3750	GntR family transcriptional regulator
	?	NC_002947	4279572 =	37 (0.680)					coding (772/1434 nt)	PP_3750	GntR family transcriptional regulator
*	?	NC_002947	4281263 =	35 (0.620)	3 (0.060)	3/246	NT	7.4%	coding (161/1197 nt)	PP_3751	cyanate transporter
	?	NC_002947	4281337 =	42 (0.780)					coding (87/1197 nt)	PP_3751	cyanate transporter
*	?	NC_002947	= 4317803	35 (0.620)	5 (0.090)	4/250	NT	12.9%	coding (64/1221 nt)	PP_3789	efflux transporter
	?	NC_002947	= 4317836	34 (0.620)					coding (97/1221 nt)	PP_3789	efflux transporter
*	?	NC_002947	= 4371726	50 (0.880)	3 (0.060)	3/230	NT	5.5%	intergenic (‑311/‑1261)	PP_5636/PP_3849	hypothetical protein/hemolysin‑type calcium‑binding protein
	?	NC_002947	= 4371778	58 (1.160)					intergenic (‑363/‑1209)	PP_5636/PP_3849	hypothetical protein/hemolysin‑type calcium‑binding protein
*	?	NC_002947	4383136 =	46 (0.810)	5 (0.090)	3/244	NT	9.9%	coding (719/804 nt)	PP_3858	tail fiber protein
	?	NC_002947	4383173 =	48 (0.900)					coding (682/804 nt)	PP_3858	tail fiber protein
*	?	NC_002947	4394498 =	46 (0.810)	3 (0.050)	3/254	NT	5.9%	coding (474/1488 nt)	PP_3869	sheath protein
	?	NC_002947	4394568 =	50 (0.900)					coding (404/1488 nt)	PP_3869	sheath protein
*	?	NC_002947	4399806 =	54 (0.950)	3 (0.050)	3/252	NT	6.3%	coding (84/972 nt)	PP_3878	minor capsid protein C
	?	NC_002947	4399876 =	37 (0.670)					coding (14/972 nt)	PP_3878	minor capsid protein C
*	?	NC_002947	4422374 =	52 (0.920)	3 (0.060)	3/244	NT	6.3%	coding (454/678 nt)	PP_3913	hypothetical protein
	?	NC_002947	4422426 =	40 (0.750)					coding (506/678 nt)	PP_3913	hypothetical protein
*	?	NC_002947	4445662 =	44 (0.780)	3 (0.060)	3/244	NT	6.8%	coding (758/807 nt)	nicD	N‑formylmaleamate deformylase
	?	NC_002947	4445717 =	41 (0.770)					coding (703/807 nt)	nicD	N‑formylmaleamate deformylase
*	?	NC_002947	= 4451529	55 (0.970)	4 (0.070)	4/246	NT	7.0%	coding (1133/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	= 4451568	54 (1.010)					coding (1172/3564 nt)	nicB	nicotinate dehydrogenase subunit B
*	?	NC_002947	= 4485733	60 (1.060)	6 (0.110)	5/248	NT	9.4%	coding (909/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485748	58 (1.070)					coding (924/1302 nt)	PP_3977	hypothetical protein
*	?	NC_002947	= 4505682	45 (0.790)	4 (0.070)	4/252	NT	8.5%	coding (456/1002 nt)	PP_3997	glycosyl transferase
	?	NC_002947	= 4505705	43 (0.780)					coding (479/1002 nt)	PP_3997	glycosyl transferase
*	?	NC_002947	= 4584828	33 (0.580)	3 (0.060)	3/244	NT	8.3%	coding (756/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4584875	35 (0.660)					coding (709/1986 nt)	glgE	alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	4592868 =	46 (0.810)	3 (0.060)	3/250	NT	6.5%	coding (1127/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	4592908 =	42 (0.770)					coding (1167/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
*	?	NC_002947	= 4593859	42 (0.740)	4 (0.090)	3/212	NT	10.9%	intergenic (+165/+134)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
	?	NC_002947	= 4593904	31 (0.670)					intergenic (+210/+89)	mccA/PP_4068	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha/Cro/CI family transcriptional regulator
*	?	NC_002947	4633435 =	56 (0.990)	3 (0.060)	3/244	NT	5.6%	coding (1676/1824 nt)	uvrC	UvrABC system protein C
	?	NC_002947	4633496 =	49 (0.920)					coding (1615/1824 nt)	uvrC	UvrABC system protein C
*	?	NC_002947	4660236 =	48 (0.850)	4 (0.070)	4/248	NT	7.8%	coding (594/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
	?	NC_002947	4660277 =	49 (0.910)					coding (635/1362 nt)	nuoF	NADH‑quinone oxidoreductase subunit F
*	?	NC_002947	4733550 =	58 (1.020)	4 (0.070)	3/246	NT	7.2%	coding (2085/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	4733587 =	49 (0.910)					coding (2048/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	= 4770607	44 (0.780)	4 (0.070)	4/250	NT	7.1%	coding (8660/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	= 4770649	62 (1.140)					coding (8618/10413 nt)	pvdD	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4780792	57 (1.010)	3 (0.060)	3/244	NT	5.4%	coding (6522/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4780812	52 (0.980)					coding (6502/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4785919	54 (0.950)	3 (0.060)	3/248	NT	6.2%	coding (1395/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4785973	40 (0.740)					coding (1341/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4805570 =	33 (0.580)	4 (0.080)	3/244	NT	10.5%	coding (2322/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
	?	NC_002947	4805636 =	37 (0.700)					coding (2256/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
*	?	NC_002947	4808174 =	1 (0.020)	18 (0.440)	11/190	NT	38.8%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	56 (1.360)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4833596 =	52 (0.920)	4 (0.080)	4/242	NT	8.7%	coding (459/801 nt)	PP_4246	substrate‑binding protein
	?	NC_002947	4833641 =	36 (0.680)					coding (414/801 nt)	PP_4246	substrate‑binding protein
*	?	NC_002947	4846314 =	62 (1.090)	4 (0.070)	4/252	NT	6.3%	coding (1064/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	4846349 =	58 (1.060)					coding (1099/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
*	?	NC_002947	= 4860136	49 (0.860)	3 (0.060)	3/238	NT	6.3%	coding (914/2331 nt)	ligA	DNA ligase
	?	NC_002947	= 4860160	45 (0.870)					coding (890/2331 nt)	ligA	DNA ligase
*	?	NC_002947	= 4870535	31 (0.550)	4 (0.070)	4/248	NT	10.9%	coding (2285/2400 nt)	xdhB	xanthine dehydrogenase subunit XdhB
	?	NC_002947	= 4870575	36 (0.670)					coding (2325/2400 nt)	xdhB	xanthine dehydrogenase subunit XdhB
*	?	NC_002947	= 4890632	56 (0.990)	4 (0.080)	4/240	NT	6.3%	intergenic (+32/‑207)	glxR/ttuD	2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase
	?	NC_002947	= 4890694	67 (1.280)					intergenic (+94/‑145)	glxR/ttuD	2‑hydroxy‑3‑oxopropionate reductase/hydroxypyruvate reductase
*	?	NC_002947	= 4891740	67 (1.180)	4 (0.080)	4/244	NT	6.5%	coding (902/1275 nt)	ttuD	hydroxypyruvate reductase
	?	NC_002947	= 4891803	52 (0.980)					coding (965/1275 nt)	ttuD	hydroxypyruvate reductase
*	?	NC_002947	= 4902847	37 (0.650)	4 (0.080)	4/226	NT	14.8%	intergenic (+33/+86)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
	?	NC_002947	= 4902910	14 (0.280)					intergenic (+96/+23)	PP_4310/PP_4311	hydantoin racemase/D‑amino acid dehydrogenase small subunit
*	?	NC_002947	= 4906708	59 (1.040)	5 (0.090)	5/250	NT	7.9%	coding (90/789 nt)	PP_4315	epimerase
	?	NC_002947	= 4906735	60 (1.100)					coding (63/789 nt)	PP_4315	epimerase
*	?	NC_002947	4986738 =	60 (1.060)	4 (0.070)	4/248	NT	7.0%	coding (63/315 nt)	flgM	flagellin biosynthesis negative regulator FlgM
	?	NC_002947	4986787 =	49 (0.910)					coding (112/315 nt)	flgM	flagellin biosynthesis negative regulator FlgM
*	?	NC_002947	= 4992272	57 (1.010)	3 (0.060)	3/248	NT	5.5%	coding (229/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
	?	NC_002947	= 4992305	49 (0.910)					coding (262/1233 nt)	bkdAA	branched‑chain alpha‑keto acid dehydrogenase complex subunit alpha
*	?	NC_002947	4999641 =	56 (0.990)	4 (0.070)	4/248	NT	6.4%	coding (494/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
	?	NC_002947	4999711 =	64 (1.180)					coding (564/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
*	?	NC_002947	5000321 =	49 (0.860)	4 (0.070)	4/246	NT	7.7%	coding (1174/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
	?	NC_002947	5000404 =	50 (0.930)					coding (1257/1383 nt)	PP_4407	gamma‑aminobutyrate transporter
*	?	NC_002947	= 5032855	84 (1.480)	5 (0.090)	5/248	NT	6.0%	intergenic (+20/‑390)	PP_4435/PP_4437	hypothetical protein/transposase
	?	NC_002947	= 5032893	77 (1.420)					intergenic (+58/‑352)	PP_4435/PP_4437	hypothetical protein/transposase
*	?	NC_002947	5036579 =	NA (NA)	3 (0.060)	3/242	NT	NA	coding (70/336 nt)	PP_4442	transposase
	?	NC_002947	5036653 =	NA (NA)					coding (144/336 nt)	PP_4442	transposase
*	?	NC_002947	5093310 =	40 (0.710)	3 (0.060)	3/246	NT	6.3%	coding (312/981 nt)	PP_4482	AraC family transcriptional regulator
	?	NC_002947	5093404 =	52 (0.970)					coding (218/981 nt)	PP_4482	AraC family transcriptional regulator
*	?	NC_002947	5104522 =	63 (1.110)	3 (0.060)	3/246	NT	5.0%	coding (748/1203 nt)	yhhS	carbohydrate efflux transporter
	?	NC_002947	5104563 =	54 (1.010)					coding (789/1203 nt)	yhhS	carbohydrate efflux transporter
*	?	NC_002947	= 5105003	37 (0.650)	5 (0.100)	4/240	NT	12.0%	intergenic (+26/+88)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase
	?	NC_002947	= 5105048	39 (0.750)					intergenic (+71/+43)	yhhS/ydiJ	carbohydrate efflux transporter/putative oxidoreductase
*	?	NC_002947	= 5118857	47 (0.830)	3 (0.060)	3/246	NT	5.9%	coding (631/1341 nt)	PP_4505	sensor histidine kinase
	?	NC_002947	= 5118883	52 (0.970)					coding (657/1341 nt)	PP_4505	sensor histidine kinase
*	?	NC_002947	= 5135437	56 (0.990)	3 (0.060)	3/250	NT	5.2%	coding (1133/1566 nt)	PP_4521	aerotaxis receptor
	?	NC_002947	= 5135461	56 (1.030)					coding (1109/1566 nt)	PP_4521	aerotaxis receptor
*	?	NC_002947	= 5137095	53 (0.940)	3 (0.060)	3/246	NT	5.3%	coding (507/894 nt)	PP_4522	LysR family transcriptional regulator
	?	NC_002947	= 5137124	58 (1.080)					coding (478/894 nt)	PP_4522	LysR family transcriptional regulator
*	?	NC_002947	= 5140943	55 (0.970)	4 (0.070)	4/252	NT	6.4%	coding (619/894 nt)	PP_4525	LysR family transcriptional regulator
	?	NC_002947	= 5140970	63 (1.150)					coding (592/894 nt)	PP_4525	LysR family transcriptional regulator
*	?	NC_002947	5162570 =	38 (0.670)	4 (0.090)	3/208	NT	14.2%	intergenic (+93/+108)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162654 =	18 (0.400)					intergenic (+177/+24)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	= 5170763	45 (0.790)	3 (0.050)	3/252	NT	6.2%	coding (992/1308 nt)	PP_4548	oxidoreductase
	?	NC_002947	= 5170795	47 (0.860)					coding (1024/1308 nt)	PP_4548	oxidoreductase
*	?	NC_002947	= 5210234	48 (0.850)	3 (0.060)	3/228	NT	6.5%	intergenic (‑100/+78)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	= 5210293	44 (0.890)					intergenic (‑159/+19)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	5233410 =	44 (0.780)	6 (0.110)	6/246	NT	12.0%	coding (274/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5233446 =	46 (0.860)					coding (310/513 nt)	PP_4611	ECF family RNA polymerase sigma‑70 factor
*	?	NC_002947	5283117 =	61 (1.080)	4 (0.080)	4/244	NT	7.3%	coding (644/951 nt)	ypfJ	zinc metalloprotease
	?	NC_002947	5283187 =	45 (0.850)					coding (714/951 nt)	ypfJ	zinc metalloprotease
*	?	NC_002947	5289006 =	67 (1.180)	4 (0.070)	4/254	NT	6.1%	coding (169/672 nt)	mdaB	drug activity modulator B
	?	NC_002947	5289047 =	57 (1.030)					coding (128/672 nt)	mdaB	drug activity modulator B
*	?	NC_002947	= 5320779	62 (1.090)	4 (0.070)	4/250	NT	6.9%	coding (136/801 nt)	PP_4682	TPR repeat‑containing protein
	?	NC_002947	= 5320876	48 (0.880)					coding (39/801 nt)	PP_4682	TPR repeat‑containing protein
*	?	NC_002947	= 5423661	63 (1.110)	4 (0.070)	4/252	NT	6.7%	coding (43/687 nt)	PP_5712	hypothetical protein
	?	NC_002947	= 5423704	51 (0.930)					coding (86/687 nt)	PP_5712	hypothetical protein
*	?	NC_002947	= 5461198	51 (0.900)	3 (0.050)	3/254	NT	6.1%	coding (138/1317 nt)	PP_4798	membrane‑bound lytic murein transglycosylase
	?	NC_002947	= 5461230	43 (0.780)					coding (170/1317 nt)	PP_4798	membrane‑bound lytic murein transglycosylase
*	?	NC_002947	5467363 =	58 (1.020)	4 (0.070)	4/248	NT	7.2%	coding (483/1002 nt)	rlpA	RlpA‑like lipoprotein
	?	NC_002947	5467409 =	48 (0.890)					coding (437/1002 nt)	rlpA	RlpA‑like lipoprotein
*	?	NC_002947	5520633 =	55 (0.970)	3 (0.060)	3/248	NT	6.0%	coding (679/882 nt)	PP_4853	DMT superfamily permease
	?	NC_002947	5520679 =	41 (0.760)					coding (725/882 nt)	PP_4853	DMT superfamily permease
*	?	NC_002947	= 5539106	52 (0.920)	3 (0.060)	3/248	NT	5.6%	coding (1880/2355 nt)	PP_4872	hypothetical protein
	?	NC_002947	= 5539144	51 (0.940)					coding (1842/2355 nt)	PP_4872	hypothetical protein
*	?	NC_002947	5545321 =	NA (NA)	5 (0.090)	5/256	NT	8.1%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	58 (1.020)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5552336	60 (1.060)	4 (0.070)	4/246	NT	6.2%	coding (1565/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	= 5552369	65 (1.210)					intergenic (+32/+629)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	5560404 =	62 (1.090)	4 (0.070)	4/248	NT	6.6%	coding (93/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	5560445 =	54 (1.000)					coding (52/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
*	?	NC_002947	5572514 =	54 (0.950)	3 (0.060)	3/246	NT	6.2%	coding (251/543 nt)	orn	oligoribonuclease
	?	NC_002947	5572567 =	40 (0.750)					coding (198/543 nt)	orn	oligoribonuclease
*	?	NC_002947	5575127 =	45 (0.790)	3 (0.060)	3/248	NT	6.3%	coding (167/1041 nt)	motB	flagellar motor rotation protein
	?	NC_002947	5575189 =	47 (0.870)					coding (105/1041 nt)	motB	flagellar motor rotation protein
*	?	NC_002947	5594092 =	41 (0.720)	7 (0.160)	5/204	NT	22.2%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	17 (0.380)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	5634606 =	44 (0.780)	3 (0.060)	3/242	NT	7.6%	intergenic (+182/+201)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
	?	NC_002947	5634672 =	32 (0.610)					intergenic (+248/+135)	putA/PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
*	?	NC_002947	5645844 =	47 (0.830)	3 (0.060)	3/246	NT	6.3%	coding (1197/2184 nt)	PP_4954	membrane protein
	?	NC_002947	5645891 =	45 (0.840)					coding (1244/2184 nt)	PP_4954	membrane protein
*	?	NC_002947	= 5647616	54 (0.950)	3 (0.060)	3/248	NT	5.5%	intergenic (‑29/‑125)	PP_4955/elaA	hypothetical protein/acetyltransferase
	?	NC_002947	= 5647641	51 (0.940)					intergenic (‑54/‑100)	PP_4955/elaA	hypothetical protein/acetyltransferase
*	?	NC_002947	= 5649951	44 (0.780)	5 (0.090)	5/254	NT	10.3%	coding (1242/2127 nt)	PP_4959	diguanylate cyclase
	?	NC_002947	= 5649985	44 (0.790)					coding (1208/2127 nt)	PP_4959	diguanylate cyclase
*	?	NC_002947	5657326 =	51 (0.900)	3 (0.060)	3/246	NT	5.7%	coding (369/1998 nt)	tktA	transketolase A
	?	NC_002947	5657374 =	51 (0.950)					coding (321/1998 nt)	tktA	transketolase A
*	?	NC_002947	= 5666940	43 (0.760)	5 (0.090)	4/252	NT	8.7%	coding (954/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
	?	NC_002947	= 5666987	63 (1.150)					coding (1001/1236 nt)	nhaP	NhaP‑type Na+(K+)/H+ antiporter
*	?	NC_002947	= 5697607	70 (1.240)	4 (0.070)	4/252	NT	5.8%	coding (241/1344 nt)	hslU	protease HslVU ATPase subunit
	?	NC_002947	= 5697644	63 (1.150)					coding (278/1344 nt)	hslU	protease HslVU ATPase subunit
*	?	NC_002947	= 5699460	53 (0.940)	4 (0.080)	4/244	NT	7.1%	intergenic (+206/‑63)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5699488	55 (1.030)					intergenic (+234/‑35)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
*	?	NC_002947	= 5714441	44 (0.780)	3 (0.060)	3/250	NT	6.4%	coding (195/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase
	?	NC_002947	= 5714473	46 (0.840)					coding (227/393 nt)	hisI	phosphoribosyl‑AMP cyclohydrolase
*	?	NC_002947	= 5739452	51 (0.900)	3 (0.060)	3/246	NT	5.6%	coding (382/1365 nt)	hutF	formiminoglutamate deiminase
	?	NC_002947	= 5739519	53 (0.990)					coding (449/1365 nt)	hutF	formiminoglutamate deiminase
*	?	NC_002947	5743336 =	60 (1.060)	11 (0.220)	10/234	NT	18.8%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5743390 =	41 (0.800)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5747542 =	60 (1.060)	3 (0.050)	3/252	NT	5.4%	coding (432/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein
	?	NC_002947	5747589 =	48 (0.870)					coding (385/1422 nt)	PP_5043	PhoPQ‑activated pathogenicity‑like protein
*	?	NC_002947	= 5774063	65 (1.150)	4 (0.070)	4/248	NT	5.9%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	65 (1.200)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI
*	?	NC_002947	5786472 =	74 (1.310)	5 (0.110)	5/212	NT	9.4%	intergenic (+15/‑116)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	5786557 =	36 (0.780)					intergenic (+100/‑31)	PP_5068/trxC	hypothetical protein/thioredoxin
*	?	NC_002947	= 5811876	47 (0.830)	3 (0.060)	3/246	NT	6.5%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	42 (0.780)					coding (1235/2220 nt)	priA	primosome assembly protein
*	?	NC_002947	= 5833298	41 (0.720)	5 (0.090)	5/246	NT	11.1%	coding (924/1356 nt)	PP_5112	peptidase
	?	NC_002947	= 5833324	41 (0.760)					coding (950/1356 nt)	PP_5112	peptidase
*	?	NC_002947	5834478 =	66 (1.160)	3 (0.050)	3/252	NT	5.3%	coding (756/1491 nt)	PP_5113	Zn‑dependent peptidase
	?	NC_002947	5834528 =	44 (0.800)					coding (806/1491 nt)	PP_5113	Zn‑dependent peptidase
*	?	NC_002947	= 5835739	67 (1.180)	6 (0.110)	4/252	NT	7.9%	coding (527/603 nt)	PP_5114	adenine methyltransferase
	?	NC_002947	= 5835786	75 (1.370)					coding (574/603 nt)	PP_5114	adenine methyltransferase
*	?	NC_002947	= 5863595	56 (0.990)	5 (0.090)	4/252	NT	8.1%	coding (294/870 nt)	PP_5138	LysR family transcriptional regulator
	?	NC_002947	= 5863625	59 (1.070)					coding (264/870 nt)	PP_5138	LysR family transcriptional regulator
*	?	NC_002947	5864825 =	55 (0.970)	4 (0.070)	3/246	NT	7.8%	coding (1326/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5864867 =	43 (0.800)					coding (1284/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	5907241 =	74 (1.310)	5 (0.090)	5/242	NT	7.2%	coding (726/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	5907301 =	61 (1.160)					coding (666/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
*	?	NC_002947	= 5914184	41 (0.720)	4 (0.090)	4/204	NT	11.3%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914224	31 (0.700)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	= 5943622	28 (0.490)	4 (0.090)	4/216	NT	11.7%	intergenic (+30/+55)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	= 5943643	37 (0.790)					intergenic (+51/+34)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
*	?	NC_002947	= 5985929	67 (1.180)	4 (0.070)	4/250	NT	6.3%	coding (196/987 nt)	PP_5245	AraC family transcriptional regulator
	?	NC_002947	= 5985981	55 (1.010)					coding (248/987 nt)	PP_5245	AraC family transcriptional regulator
*	?	NC_002947	= 6017090	64 (1.130)	4 (0.070)	3/252	NT	6.7%	coding (244/423 nt)	PP_5267	cytochrome c5
	?	NC_002947	= 6017126	49 (0.890)					coding (208/423 nt)	PP_5267	cytochrome c5
*	?	NC_002947	6031192 =	48 (0.850)	4 (0.070)	4/248	NT	8.0%	coding (46/1590 nt)	dppA‑IV	dipeptide transport protein
	?	NC_002947	6031240 =	46 (0.850)					coding (94/1590 nt)	dppA‑IV	dipeptide transport protein
*	?	NC_002947	6045035 =	46 (0.810)	6 (0.110)	4/246	NT	12.3%	coding (255/1608 nt)	PP_5297	amino acid transporter
	?	NC_002947	6045071 =	42 (0.780)					coding (219/1608 nt)	PP_5297	amino acid transporter
*	?	NC_002947	= 6070525	53 (0.940)	4 (0.070)	4/248	NT	7.0%	coding (120/891 nt)	PP_5324	two‑component system response regulator
	?	NC_002947	= 6070551	55 (1.020)					coding (94/891 nt)	PP_5324	two‑component system response regulator
*	?	NC_002947	6087874 =	55 (0.970)	5 (0.090)	4/248	NT	8.7%	coding (96/1044 nt)	aphA	acetylpolyamine aminohydrolase
	?	NC_002947	6087918 =	53 (0.980)					coding (140/1044 nt)	aphA	acetylpolyamine aminohydrolase
*	?	NC_002947	= 6101324	61 (1.080)	4 (0.070)	4/250	NT	6.1%	coding (476/2187 nt)	uvrD	DNA‑dependent ATPase I/helicase II
	?	NC_002947	= 6101342	65 (1.190)					coding (494/2187 nt)	uvrD	DNA‑dependent ATPase I/helicase II