breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,707	G→C	5.4%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	3,114	G→T	13.0%	T423N (ACT→AAT)	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,119	C→T	13.0%	L421L (TTG→TTA) ‡	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,120	A→T	12.2%	L421* (TTG→TAG) ‡	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,121	A→G	12.2%	L421L (TTG→CTG) ‡	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,126	A→C	11.7%	I419S (ATT→AGT)	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	24,987	T→A	5.5%	L98Q (CTG→CAG)	PP_0020 →	hypothetical protein
RA	26,844	A→T	7.6%	intergenic (+40/+145)	PP_0021 → / ← PP_0022	hypothetical protein/hypothetical protein
RA	35,009	A→G	5.6%	intergenic (+27/+31)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	36,169	G→T	8.3%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	9.3%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	9.3%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	8.0%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	47,140	C→G	7.8%	A745A (GCG→GCC) ‡	czcA‑I ←	cation efflux system protein
RA	47,141	G→C	8.1%	A745G (GCG→GGG) ‡	czcA‑I ←	cation efflux system protein
RA	47,142	C→G	8.0%	A745P (GCG→CCG) ‡	czcA‑I ←	cation efflux system protein
RA	53,278	T→C	7.4%	G295G (GGT→GGC)	opdT‑I →	tyrosine‑specific outer membrane porin D
RA	58,435	G→C	8.6%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,437	T→A	8.6%	intergenic (‑348/+340)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	8.8%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,747	T→A	13.8%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	13.5%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	97,592	G→T	21.0%	intergenic (+21/+15)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,593	A→T	12.4%	intergenic (+22/+14)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	97,594	A→C	14.9%	intergenic (+23/+13)	PP_0090 → / ← PP_0091	hypothetical protein/putative lipoprotein
RA	111,820	G→A	6.5%	D81N (GAC→AAC)	PP_0105 →	cytochrome c oxidase assembly protein
RA	126,115	A→G	6.7%	intergenic (+25/+25)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	126,116	C→T	6.7%	intergenic (+26/+24)	PP_0120 → / ← thrB	zinc ABC transporter/homoserine kinase
RA	150,828	A→C	7.9%	L41R (CTG→CGG) ‡	PP_0142 ←	ABC transporter permease
RA	150,829	G→T	8.2%	L41M (CTG→ATG) ‡	PP_0142 ←	ABC transporter permease
RA	152,157	A→T	8.7%	intergenic (‑51/+43)	PP_0143 ← / ← PP_0144	membrane protein/insulinase family metalloprotease
RA	152,158	A→T	8.7%	intergenic (‑52/+42)	PP_0143 ← / ← PP_0144	membrane protein/insulinase family metalloprotease
RA	155,543	G→T	6.6%	intergenic (‑248/+35)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	155,546	A→C	6.1%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	162,281	A→T	5.9%	intergenic (‑315/+59)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	165,266	A→G	10.5%	I64T (ATC→ACC)	pntB ←	pyridine nucleotide transhydrogenase subunit beta
RA	165,269	C→T	10.7%	G63D (GGT→GAT)	pntB ←	pyridine nucleotide transhydrogenase subunit beta
RA	170,277	A→T	8.7%	T227S (ACC→TCC)	PP_0159 →	family III CoA‑transferase
RA	170,841	A→C	9.4%	intergenic (+22/‑548)	PP_0159 → / → PP_16SA	family III CoA‑transferase/16S ribosomal RNA
RA	182,034	G→A	6.8%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	6.5%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	6.8%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	185,723	T→A	6.3%	H139L (CAT→CTT)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,726	T→A	6.6%	K138M (AAG→ATG)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,731	C→G	6.7%	G136G (GGG→GGC)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	185,734	C→A	6.8%	E135D (GAG→GAT)	PP_0162 ←	ECF family RNA polymerase sigma‑70 factor
RA	186,789	G→A	6.5%	A43V (GCC→GTC)	PP_0163 ←	transcriptional regulator
RA	195,559	C→A	23.1%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	10.3%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	10.3%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	33.8%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	16.0%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	18.3%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	19.7%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	19.5%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	15.1%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	36.3%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	10.1%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	18.9%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	8.7%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	14.4%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	16.9%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	18.3%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	200,340	C→A	8.0%	T1949N (ACC→AAC)	PP_0168 →	putative surface adhesion protein
RA	226,066	G→A	8.1%	D98N (GAT→AAT)	PP_0174 →	hypothetical protein
RA	262,752	T→A	6.4%	L90Q (CTG→CAG)	PP_0211 →	hypothetical protein
RA	262,757:1	+C	6.7%	coding (274/282 nt)	PP_0211 →	hypothetical protein
RA	268,744	T→A	12.4%	intergenic (‑75/+25)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	268,746	G→C	11.4%	intergenic (‑77/+23)	PP_0216 ← / ← desA	sensory box/GGDEF family protein/delta‑9 fatty acid desaturase
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	288,011	T→C	5.3%	T33A (ACC→GCC)	tauA ←	taurine ABC transporter substrate‑binding protein
RA	288,015	G→C	5.3%	Y31* (TAC→TAG) ‡	tauA ←	taurine ABC transporter substrate‑binding protein
RA	288,016	T→C	5.4%	Y31C (TAC→TGC) ‡	tauA ←	taurine ABC transporter substrate‑binding protein
RA	289,942	C→A	10.0%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	9.8%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	9.9%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	295,246	G→A	6.9%	G217E (GGG→GAG)	ssuB →	aliphatic sulfonates ABC transporter ATP‑binding protein SsuB
RA	295,678	T→A	9.1%	intergenic (+26/+116)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,679	T→A	8.9%	intergenic (+27/+115)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	295,680	T→A	8.9%	intergenic (+28/+114)	PP_0241 → / ← PP_0242	transporter/TetR family transcriptional regulator
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	322,133	G→A	10.3%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	10.1%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	325,128	G→A	8.9%	V138V (GTG→GTA)	oprQ →	outer‑membrane porin D
RA	325,131	G→T	8.3%	L139L (CTG→CTT)	oprQ →	outer‑membrane porin D
RA	325,669	A→G	7.7%	T319A (ACC→GCC)	oprQ →	outer‑membrane porin D
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	22.2%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	21.6%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	21.0%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	20.0%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	20.5%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	21.1%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	25.0%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	371,116	C→A	9.5%	R199R (CGC→CGA)	dgcA →	dimethylglycine dehydrogenase subunit
RA	371,119	G→T	11.1%	M200I (ATG→ATT)	dgcA →	dimethylglycine dehydrogenase subunit
RA	371,120	A→T	9.5%	K201* (AAA→TAA) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	371,121	A→C	9.1%	K201T (AAA→ACA) ‡	dgcA →	dimethylglycine dehydrogenase subunit
RA	371,124	T→G	9.5%	F202C (TTC→TGC)	dgcA →	dimethylglycine dehydrogenase subunit
RA	387,791	T→G	8.5%	S311A (TCC→GCC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,792	C→T	8.4%	S311F (TCC→TTC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,798	G→C	8.6%	G313A (GGC→GCC)	glyA‑I →	serine hydroxymethyltransferase
RA	387,804	A→G	9.8%	D315G (GAC→GGC) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	387,805	C→A	10.5%	D315E (GAC→GAA) ‡	glyA‑I →	serine hydroxymethyltransferase
RA	396,856	C→G	7.6%	L30L (CTG→CTC)	PP_0329 ←	hypothetical protein
RA	417,618	G→C	7.2%	K69N (AAG→AAC)	waaP →	lipopolysaccharide core heptose (I) kinase
RA	425,348	A→C	9.8%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,349	A→T	8.6%	intergenic (‑40/+17)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	425,350	G→T	8.6%	intergenic (‑41/+16)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	428,866	G→T	8.3%	A47A (GCC→GCA)	PP_0351 ←	transmembrane sensor
RA	450,918	T→C	6.6%	noncoding (115/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,919	T→G	6.7%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,920	C→A	6.9%	noncoding (117/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,921	G→A	6.9%	noncoding (118/127 nt)	PP_mr05 →	RsmY ncRNA
RA	460,935	G→C	6.7%	P510P (CCC→CCG) ‡	pqqF ←	coenzyme PQQ synthesis protein F
RA	460,936	G→C	6.7%	P510R (CCC→CGC) ‡	pqqF ←	coenzyme PQQ synthesis protein F
RA	460,937	G→C	6.7%	P510A (CCC→GCC) ‡	pqqF ←	coenzyme PQQ synthesis protein F
RA	460,938	G→C	6.7%	I509M (ATC→ATG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	464,320	G→C	9.3%	H259Q (CAC→CAG) ‡	davB ←	lysine 2‑monooxygenase
RA	464,321	T→A	9.3%	H259L (CAC→CTC) ‡	davB ←	lysine 2‑monooxygenase
RA	464,322	G→C	9.4%	H259D (CAC→GAC) ‡	davB ←	lysine 2‑monooxygenase
RA	491,089	G→A	6.2%	N444N (AAC→AAT) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,090	T→A	5.9%	N444I (AAC→ATC) ‡	lptD ←	LPS‑assembly protein LptD
RA	491,091	T→C	5.9%	N444D (AAC→GAC) ‡	lptD ←	LPS‑assembly protein LptD
RA	493,219	C→T	8.1%	Y223Y (TAC→TAT)	PP_0405 →	hypothetical protein
RA	494,451	A→T	6.7%	D71V (GAT→GTT)	djlA →	DnaJ‑like protein DjlA
RA	495,077	T→G	6.2%	Q319H (CAA→CAC) ‡	PP_0408 ←	hypothetical protein
RA	495,078	T→A	6.2%	Q319L (CAA→CTA) ‡	PP_0408 ←	hypothetical protein
RA	495,081	T→A	6.4%	E318V (GAG→GTG)	PP_0408 ←	hypothetical protein
RA	495,716	A→G	5.7%	N106N (AAT→AAC)	PP_0408 ←	hypothetical protein
RA	496,096	T→A	9.2%	intergenic (‑63/‑33)	PP_0408 ← / → PP_0409	hypothetical protein/two‑component system sensor histidine kinase
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,592	T→C	9.6%	F208S (TTT→TCT) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,593	T→A	9.6%	F208L (TTT→TTA) ‡	PP_0414 →	polyamine ABC transporter permease
RA	503,594	G→A	9.6%	D209N (GAC→AAC)	PP_0414 →	polyamine ABC transporter permease
RA	507,236	A→G	5.2%	L592P (CTG→CCG)	estP ←	esterase EstP
RA	507,240	T→G	6.2%	S591R (AGC→CGC)	estP ←	esterase EstP
RA	507,241	C→A	5.8%	A590A (GCG→GCT)	estP ←	esterase EstP
RA	507,245	C→T	6.3%	R589Q (CGG→CAG)	estP ←	esterase EstP
RA	524,336	A→G	8.0%	intergenic (+203/‑613)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,349	G→C	13.1%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,352	G→C	13.2%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	532,616	G→C	5.8%	noncoding (35/76 nt)	PP_t03 →	tRNA‑Thr
RA	532,617	T→C	5.5%	noncoding (36/76 nt)	PP_t03 →	tRNA‑Thr
RA	550,549	C→G	6.1%	intergenic (+30/‑112)	tufB → / → rpsJ	elongation factor Tu‑B/30S ribosomal protein S10
RA	557,332	Δ1 bp	8.3%	intergenic (+75/‑134)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	557,336:1	+A	8.4%	intergenic (+79/‑130)	rpsN → / → rpsH	30S ribosomal protein S14/30S ribosomal protein S8
RA	558,477	A→C	5.1%	E21D (GAA→GAC)	rplR →	50S ribosomal protein L18
RA	564,377:1	+A	6.8%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	6.6%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	600,244	T→G	7.3%	V24G (GTC→GGC)	nrdR →	DNA‑binding transcriptional repressor NrdR
RA	600,247	C→A	7.2%	A25D (GCC→GAC)	nrdR →	DNA‑binding transcriptional repressor NrdR
RA	604,469	C→T	7.1%	P101S (CCA→TCA) ‡	nusB →	transcription antitermination protein
RA	604,470	C→G	7.0%	P101R (CCA→CGA) ‡	nusB →	transcription antitermination protein
RA	604,471	A→G	6.8%	P101P (CCA→CCG) ‡	nusB →	transcription antitermination protein
RA	605,121	G→A	6.4%	R145H (CGC→CAC)	thiL →	thiamin monophosphate kinase
RA	605,126	A→T	6.3%	S147C (AGC→TGC)	thiL →	thiamin monophosphate kinase
RA	605,131	T→C	6.3%	G148G (GGT→GGC)	thiL →	thiamin monophosphate kinase
RA	614,798	G→C	6.7%	P150R (CCG→CGG)	ispA ←	farnesyl diphosphate synthase
RA	619,820	G→A	8.5%	Q60* (CAG→TAG)	pfeS‑I ←	histidine kinase
RA	625,062	C→T	7.5%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,063	A→T	6.9%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,064	A→T	7.0%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,065	A→G	7.3%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	627,782	G→T	5.9%	P29P (CCC→CCA)	PP_0541 ←	acetyltransferase
RA	635,840	G→T	7.1%	E22* (GAA→TAA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,841	A→T	7.1%	E22V (GAA→GTA) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	635,842	A→C	7.1%	E22D (GAA→GAC) ‡	mpl →	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
RA	642,510	C→G	7.4%	R159R (CGG→CGC)	acoC ←	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
RA	642,515	Δ1 bp	6.7%	coding (472/1107 nt)	acoC ←	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
RA	642,522:1	+G	6.8%	coding (465/1107 nt)	acoC ←	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
RA	642,527	C→G	6.8%	A154P (GCG→CCG)	acoC ←	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
RA	676,102	T→C	7.9%	Q103Q (CAA→CAG)	PP_0578 ←	putative Methyltransferase
RA	693,590	C→G	8.7%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	699,722	A→G	54.6%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	13.9%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	13.6%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	13.6%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	707,561	T→C	10.8%	intergenic (‑213/‑38)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,563	T→A	10.4%	intergenic (‑215/‑36)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	707,565	G→A	10.7%	intergenic (‑217/‑34)	rpsT ← / → murJ	30S ribosomal protein S20/lipid II flippase
RA	708,502	G→T	10.2%	E302* (GAG→TAG) ‡	murJ →	lipid II flippase
RA	708,504	G→C	10.2%	E302D (GAG→GAC) ‡	murJ →	lipid II flippase
RA	708,506	A→C	8.9%	Y303S (TAC→TCC)	murJ →	lipid II flippase
RA	714,958	G→A	9.4%	intergenic (+24/+53)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,966	T→A	10.2%	intergenic (+32/+45)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,967	T→A	9.2%	intergenic (+33/+44)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,968	T→A	9.3%	intergenic (+34/+43)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	730,704	A→T	8.0%	N82Y (AAC→TAC)	clpB →	chaperone protein ClpB
RA	772,178	T→C	8.0%	intergenic (+39/‑160)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,179	T→G	8.1%	intergenic (+40/‑159)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,182	C→A	7.3%	intergenic (+43/‑156)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	772,183	G→A	7.9%	intergenic (+44/‑155)	PP_0663 → / → PP_0664	AsnC family transcriptional regulator/homoserine dehydrogenase
RA	782,840	T→G	6.0%	E1029A (GAG→GCG)	PP_0672 ←	sensory box protein
RA	787,188	C→G	7.0%	A102A (GCC→GCG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,189	C→G	7.0%	R103G (CGC→GGC)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	788,581	C→A	5.6%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	5.5%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	5.6%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	5.6%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	791,847	T→C	7.6%	H401R (CAT→CGT)	PP_0678 ←	hypothetical protein
RA	797,509	G→A	6.4%	intergenic (+33/‑44)	PP_0682 → / → PP_0683	inner membrane protein/hypothetical protein
RA	805,137	G→T	6.7%	S731S (TCC→TCA) ‡	PP_0693 ←	hypothetical protein
RA	805,138	G→C	6.7%	S731C (TCC→TGC) ‡	PP_0693 ←	hypothetical protein
RA	805,139	A→C	6.6%	S731A (TCC→GCC) ‡	PP_0693 ←	hypothetical protein
RA	806,078	T→G	5.6%	M418L (ATG→CTG)	PP_0693 ←	hypothetical protein
RA	806,084	G→C	7.1%	R416G (CGC→GGC)	PP_0693 ←	hypothetical protein
RA	806,091	G→C	6.0%	D413E (GAC→GAG) ‡	PP_0693 ←	hypothetical protein
RA	806,092	T→G	5.5%	D413A (GAC→GCC) ‡	PP_0693 ←	hypothetical protein
RA	817,870	C→T	7.2%	A100T (GCG→ACG)	PP_0703 ←	transmembrane sensor
RA	834,159	T→C	5.2%	W279R (TGG→CGG)	PP_0717 →	membrane protein
RA	838,599	G→T	6.3%	D33E (GAC→GAA)	rplY ←	50S ribosomal protein L25/general stress protein Ctc
RA	841,822	C→A	7.8%	V410L (GTG→TTG)	PP_0725 ←	TPR repeat‑containing protein
RA	863,370	G→A	12.1%	A168A (GCG→GCA)	hemH →	ferrochelatase
RA	868,510	G→A	8.6%	L360L (CTG→TTG)	mqo‑I ←	malate:quinone oxidoreductase
RA	868,515	T→C	8.9%	K358R (AAG→AGG)	mqo‑I ←	malate:quinone oxidoreductase
RA	883,806	T→G	13.4%	intergenic (+44/‑284)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	883,807	C→A	13.7%	intergenic (+45/‑283)	PP_0766 → / → PP_0767	hypothetical protein/LuxR family transcriptional regulator
RA	888,986	G→A	7.4%	R139H (CGC→CAC)	PP_0769 →	sensor histidine kinase
RA	895,219	G→C	7.0%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	923,382	G→C	7.1%	A604G (GCC→GGC)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,390	C→G	6.0%	A601A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,391	G→C	6.0%	A601G (GCG→GGG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,393	G→A	5.9%	A600A (GCC→GCT)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,396	C→G	7.3%	V599V (GTG→GTC)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,402	T→G	6.3%	E597D (GAA→GAC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,403	T→A	6.2%	E597V (GAA→GTA) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,410	C→G	6.6%	D595H (GAC→CAC)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,413	T→C	6.8%	S594G (AGC→GGC)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,415	G→C	6.8%	A593G (GCC→GGC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,416	C→G	6.8%	A593P (GCC→CCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	923,424	G→C	5.3%	A590G (GCC→GGC)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,320	C→G	6.7%	A291A (GCG→GCC) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	924,321	G→A	5.8%	A291V (GCG→GTG) ‡	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	926,250	T→G	9.1%	N126H (AAT→CAT)	PP_0805 ←	outer membrane efflux protein
RA	926,255	T→C	9.0%	D124G (GAC→GGC) ‡	PP_0805 ←	outer membrane efflux protein
RA	926,256	C→G	8.9%	D124H (GAC→CAC) ‡	PP_0805 ←	outer membrane efflux protein
RA	926,262	C→A	8.9%	G122C (GGC→TGC)	PP_0805 ←	outer membrane efflux protein
RA	962,240	C→G	6.7%	E59Q (GAG→CAG)	selD ←	selenide, water dikinase
RA	962,242	T→A	6.7%	D58V (GAC→GTC)	selD ←	selenide, water dikinase
RA	962,245	T→A	6.7%	D57V (GAC→GTC)	selD ←	selenide, water dikinase
RA	962,247	C→G	6.6%	L56L (CTG→CTC)	selD ←	selenide, water dikinase
RA	964,468	C→A	6.8%	P92T (CCG→ACG)	phnE →	phosphonate ABC transporter permease
RA	972,115	T→A	8.4%	L136Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	972,118	T→A	8.8%	L137Q (CTG→CAG)	secD →	protein translocase subunit SecD
RA	973,635	G→A	7.0%	V18V (GTG→GTA)	secF →	protein translocase subunit SecF
RA	983,256	T→C	7.4%	V89V (GTT→GTC)	fdx →	ferredoxin
RA	991,554	G→A	15.2%	G59D (GGT→GAT)	der →	GTPase Der
RA	991,557	T→C	15.5%	I60T (ATC→ACC)	der →	GTPase Der
RA	991,566	A→T	9.6%	D63V (GAC→GTC)	der →	GTPase Der
RA	992,863	G→T	7.3%	intergenic (+21/‑131)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,866	A→T	7.3%	intergenic (+24/‑128)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	992,868	A→C	7.9%	intergenic (+26/‑126)	der → / → PP_0858	GTPase Der/methionine/glutamine aminotransferase
RA	996,022	T→A	8.5%	Q525L (CAG→CTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,025	C→A	7.5%	W524L (TGG→TTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,028	T→G	6.4%	Q523P (CAA→CCA)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	996,031	T→A	6.3%	Q522L (CAG→CTG)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	999,287	C→T	8.3%	G278R (GGG→AGG)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	1,004,526	A→T	6.8%	Q184L (CAG→CTG)	PP_0866 →	transmembrane sensor
RA	1,012,826	T→A	7.7%	L413Q (CTG→CAG)	prfC →	peptide chain release factor 3
RA	1,012,829	A→T	8.3%	Q414L (CAG→CTG)	prfC →	peptide chain release factor 3
RA	1,012,832	A→T	8.3%	Q415L (CAG→CTG)	prfC →	peptide chain release factor 3
RA	1,012,835	T→A	7.5%	L416Q (CTG→CAG)	prfC →	peptide chain release factor 3
RA	1,013,228	A→T	12.5%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	24.3%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	24.3%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	23.5%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	23.5%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	18.2%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	19.9%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	20.7%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,025,784	T→G	5.8%	D395A (GAC→GCC)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,027,996	G→C	10.5%	A248A (GCC→GCG)	dppA‑III ←	dipeptide ABC transporter substrate‑binding protein
RA	1,027,999	G→C	10.5%	D247E (GAC→GAG)	dppA‑III ←	dipeptide ABC transporter substrate‑binding protein
RA	1,058,717	G→C	6.2%	V57V (GTC→GTG)	sodB ←	superoxide dismutase
RA	1,065,068	C→T	8.3%	A259A (GCG→GCA)	PP_0923 ←	acyltransferase
RA	1,065,210	C→T	6.6%	R212Q (CGG→CAG)	PP_0923 ←	acyltransferase
RA	1,065,213	G→C	6.3%	P211R (CCG→CGG)	PP_0923 ←	acyltransferase
RA	1,065,216	A→G	6.3%	L210P (CTG→CCG)	PP_0923 ←	acyltransferase
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,099,295	G→T	6.1%	R91S (CGT→AGT)	kdsD ←	D‑arabinose 5‑phosphate isomerase
RA	1,100,433	A→T	6.7%	E207V (GAA→GTA) ‡	mlaF →	ABC transporter ATP‑binding protein
RA	1,100,434	A→T	6.7%	E207D (GAA→GAT) ‡	mlaF →	ABC transporter ATP‑binding protein
RA	1,100,435	A→T	6.6%	T208S (ACT→TCT)	mlaF →	ABC transporter ATP‑binding protein
RA	1,120,932	G→A	8.6%	V125I (GTT→ATT) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,120,933	T→A	8.5%	V125D (GTT→GAT) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,120,934	T→C	8.5%	V125V (GTT→GTC) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,192	A→T	9.7%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,433	C→T	14.8%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,440	G→A	16.9%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	16.9%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,448	A→G	18.3%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,164,075	G→A	5.9%	V128I (GTC→ATC)	yeaD →	glucose‑6‑phosphate 1‑epimerase
RA	1,166,976	G→A	7.1%	W454* (TGG→TAG)	zwfA →	glucose 6‑phosphate‑1‑dehydrogenase
RA	1,184,585	G→C	19.6%	intergenic (‑201/‑211)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,184,588	G→C	19.7%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,209,007	C→G	7.6%	intergenic (‑7/‑385)	PP_1058 ← / → ytnA	hypothetical protein/amino acid permease YtnA
RA	1,225,473	G→T	6.6%	intergenic (‑49/+97)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,480	A→C	6.4%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,481	A→T	6.4%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,482	G→T	6.3%	intergenic (‑58/+88)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,232,736	G→C	7.5%	intergenic (‑24/+193)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,232,737	A→G	7.7%	intergenic (‑25/+192)	glpD ← / ← glpR	aerobic glycerol‑3‑phosphate dehydrogenase/DNA‑binding transcriptional repressor GlpR
RA	1,235,391	G→A	8.0%	P266P (CCC→CCT)	glpF ←	aquaglyceroporin
RA	1,236,459	Δ1 bp	7.3%	intergenic (‑271/‑32)	glpF ← / → ybaK	aquaglyceroporin/Cys‑tRNAPro deacylase
RA	1,236,460	Δ1 bp	7.3%	intergenic (‑272/‑31)	glpF ← / → ybaK	aquaglyceroporin/Cys‑tRNAPro deacylase
RA	1,236,461	Δ1 bp	7.3%	intergenic (‑273/‑30)	glpF ← / → ybaK	aquaglyceroporin/Cys‑tRNAPro deacylase
RA	1,241,527	A→G	6.9%	intergenic (+19/‑73)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,529	G→C	7.1%	intergenic (+21/‑71)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,241,531	C→T	7.1%	intergenic (+23/‑69)	PP_1080 → / → grxD	molybdopterin‑binding oxidoreductase/monothiol glutaredoxin
RA	1,244,368	A→G	14.0%	G39G (GGT→GGC) ‡	rnt ←	ribonuclease T
RA	1,244,369	C→G	14.1%	G39A (GGT→GCT) ‡	rnt ←	ribonuclease T
RA	1,244,370	C→T	14.0%	G39S (GGT→AGT) ‡	rnt ←	ribonuclease T
RA	1,245,704	C→A	7.0%	P20Q (CCG→CAG)	PP_1087 →	OmpA family outer membrane protein
RA	1,247,638	G→T	10.0%	E223D (GAG→GAT)	argG →	argininosuccinate synthase
RA	1,256,881	A→T	7.6%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,882	G→T	7.4%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,883	A→C	7.6%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,884	A→T	7.6%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,258,040	G→T	5.3%	intergenic (+16/‑46)	dcd → / → PP_1101	deoxycytidine triphosphate deaminase/hypothetical protein
RA	1,258,045	A→C	5.7%	intergenic (+21/‑41)	dcd → / → PP_1101	deoxycytidine triphosphate deaminase/hypothetical protein
RA	1,273,533	A→C	7.7%	H14Q (CAT→CAG)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,536	G→A	8.1%	N13N (AAC→AAT) ‡	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,537	T→C	8.1%	N13S (AAC→AGC) ‡	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,542	G→A	8.3%	D11D (GAC→GAT) ‡	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,543	T→C	8.5%	D11G (GAC→GGC) ‡	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,546	G→T	9.6%	P10H (CCT→CAT)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,275,084	G→C	11.4%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,275,087	G→C	13.4%	intergenic (‑284/+28)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,284,332	G→A	7.2%	P90P (CCG→CCA)	PP_1121 →	OmpA family protein
RA	1,284,338	T→G	7.0%	G92G (GGT→GGG)	PP_1121 →	OmpA family protein
RA	1,284,555	A→G	6.0%	S165G (AGC→GGC)	PP_1121 →	OmpA family protein
RA	1,322,226	T→C	7.1%	N169D (AAT→GAT)	PP_1154 ←	sensory box protein
RA	1,327,121	C→T	50.4%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,352,196	T→C	5.1%	intergenic (‑412/+30)	nrdB ← / ← PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
RA	1,352,197	G→C	5.3%	intergenic (‑413/+29)	nrdB ← / ← PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
RA	1,352,210	A→G	5.2%	intergenic (‑426/+16)	nrdB ← / ← PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
RA	1,355,771	T→G	6.1%	intergenic (+38/‑354)	PP_1180 → / → PP_1181	hypothetical protein/two‑component system response regulator
RA	1,356,632	A→G	6.9%	N170D (AAC→GAC) ‡	PP_1181 →	two‑component system response regulator
RA	1,356,634	C→T	6.8%	N170N (AAC→AAT) ‡	PP_1181 →	two‑component system response regulator
RA	1,358,572	T→C	5.9%	A187A (GCA→GCG)	PP_1183 ←	siderophore biosynthesis protein
RA	1,361,924	A→G	5.2%	Y105C (TAT→TGT)	phoQ →	sensor protein
RA	1,364,488	C→G	5.7%	A394G (GCC→GGC)	dctA‑I →	C4‑dicarboxylate transport protein
RA	1,387,895	G→A	10.4%	intergenic (+121/+1)	PP_1208 → / ← PP_1209	SlyX family protein/cold‑shock protein
RA	1,387,896	T→C	10.6%	*198W (TGA→TGG)	PP_1209 ←	cold‑shock protein
RA	1,390,996	G→C	6.3%	G268A (GGC→GCC)	aspS →	aspartate‑‑tRNA ligase
RA	1,403,590	G→A	20.6%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	24.1%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,405,829	G→A	12.0%	I424I (ATC→ATT)	puuP ←	putrescine permease
RA	1,412,629	G→A	6.1%	G105S (GGC→AGC)	PP_1234 →	permease
RA	1,417,395	A→G	6.0%	K215E (AAG→GAG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,429,515	G→T	8.2%	intergenic (+32/‑448)	mqo‑II → / → PP_1252	malate:quinone oxidoreductase/group II intron‑encoding maturase
RA	1,435,815	A→T	8.7%	L50Q (CTG→CAG)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,435,822	A→T	8.3%	C48S (TGC→AGC)	PP_1256 ←	alpha‑ketoglutarate semialdehyde dehydrogenase
RA	1,458,117	T→G	9.3%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	9.3%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	9.7%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,468,753	T→G	5.3%	S464R (AGC→CGC)	algK ←	alginate biosynthesis protein AlgK
RA	1,468,755	T→A	5.2%	N463I (AAT→ATT)	algK ←	alginate biosynthesis protein AlgK
RA	1,468,805	T→C	5.4%	Q446Q (CAA→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,474,995	T→G	7.7%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,996	C→A	7.9%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,485,741	G→C	7.0%	L210L (CTG→CTC)	yhdY →	amino acid ABC transporter permease
RA	1,495,650	G→A	7.2%	A27T (GCC→ACC)	mdeA →	methionine gamma‑lyase
RA	1,495,653	C→A	6.5%	L28M (CTG→ATG) ‡	mdeA →	methionine gamma‑lyase
RA	1,495,654	T→G	6.9%	L28R (CTG→CGG) ‡	mdeA →	methionine gamma‑lyase
RA	1,495,657	T→C	7.0%	V29A (GTG→GCG)	mdeA →	methionine gamma‑lyase
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	T→G	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,500,763	G→A	5.4%	intergenic (+82/+25)	zapE → / ← PP_1313	nucleoside triphosphate hydrolase domain‑containing protein/AraC family transcriptional regulator
RA	1,551,282	G→T	7.7%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	8.2%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,388	A→C	9.8%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	9.8%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	11.1%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,572,889	C→A	9.1%	A337A (GCC→GCA)	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,890	C→G	9.1%	L338V (CTG→GTG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,891	T→G	9.1%	L338R (CTG→CGG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,575,190	A→C	9.0%	intergenic (‑176/+34)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,198	G→A	9.1%	intergenic (‑184/+26)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,200	T→A	9.2%	intergenic (‑186/+24)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,201	T→A	9.1%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,203	T→C	9.1%	intergenic (‑189/+21)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,211	G→T	6.4%	intergenic (‑197/+13)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,584,487	A→T	11.6%	L176Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,491	C→G	12.5%	G175R (GGG→CGG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,493	A→T	12.2%	L174Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,495	C→G	12.5%	P173P (CCG→CCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,499	A→T	12.5%	L172Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,591,716	A→C	6.0%	C60G (TGC→GGC)	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,982	C→A	10.9%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	12.3%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,594,061	T→C	13.3%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,066	G→T	13.7%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,067	C→G	13.7%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,068	A→C	13.7%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,073	G→A	13.3%	intergenic (‑271/+30)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,607,040	T→C	6.3%	H165R (CAC→CGC)	PP_1408 ←	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
RA	1,613,139	G→A	5.8%	H489H (CAC→CAT)	ushA ←	5'‑nucleotidase/2',3'‑cyclic phosphodiesterase
RA	1,621,033	A→G	8.3%	K200R (AAG→AGG)	tctD →	transcriptional regulator TctD
RA	1,622,740	G→A	6.2%	P206L (CCG→CTG)	PP_1422 ←	hypothetical protein
RA	1,625,208	A→C	13.3%	intergenic (+31/+26)	PP_1425 → / ← nadB	hypothetical protein/L‑aspartate oxidase
RA	1,625,935	T→A	6.0%	K302* (AAG→TAG)	nadB ←	L‑aspartate oxidase
RA	1,629,178	G→T	8.4%	V230F (GTC→TTC) ‡	mucB →	sigma factor AlgU regulator MucB
RA	1,629,180	C→G	7.1%	V230V (GTC→GTG) ‡	mucB →	sigma factor AlgU regulator MucB
RA	1,629,182	A→C	7.1%	N231T (AAC→ACC)	mucB →	sigma factor AlgU regulator MucB
RA	1,632,772	A→T	5.5%	Y509F (TAT→TTT)	lepA →	elongation factor 4
RA	1,632,775	A→T	5.5%	K510I (AAA→ATA)	lepA →	elongation factor 4
RA	1,633,806	A→T	5.5%	D252V (GAC→GTC)	lepB →	signal peptidase I
RA	1,635,754	T→A	8.0%	intergenic (+100/‑70)	era → / → recO	GTPase Era/DNA repair protein RecO
RA	1,641,270	G→T	5.6%	Q141K (CAG→AAG)	cmoA ←	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA
RA	1,641,273	G→C	5.5%	L140V (CTG→GTG)	cmoA ←	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA
RA	1,641,274	G→C	5.5%	T139T (ACC→ACG) ‡	cmoA ←	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA
RA	1,641,275	G→C	5.5%	T139S (ACC→AGC) ‡	cmoA ←	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA
RA	1,641,278	A→C	5.6%	F138C (TTC→TGC)	cmoA ←	tRNA 5‑methoxyuridine(34)/uridine‑5‑oxyacetic acid(34) metyltransferase CmoA
RA	1,642,285	G→C	6.3%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,292	T→C	6.4%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,301	G→A	6.5%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,303	C→T	6.6%	intergenic (‑131/+21)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,646,886	G→A	7.2%	S157S (AGC→AGT)	gcd ←	quinoprotein glucose dehydrogenase
RA	1,696,391	T→C	8.3%	S142P (TCC→CCC) ‡	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,696,392	C→G	9.8%	S142C (TCC→TGC) ‡	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,696,393	C→G	8.2%	S142S (TCC→TCG) ‡	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,696,403	C→G	7.7%	L146V (CTG→GTG)	PP_1492 →	two‑component system sensor histidine kinase/response regulator
RA	1,703,248	A→G	27.6%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	25.9%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	26.6%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,704,636	T→A	11.8%	M1M (TTG→ATG) †‡	PP_1499 →	hypothetical protein
RA	1,704,637	T→A	11.8%	M1* (TTG→TAG) †‡	PP_1499 →	hypothetical protein
RA	1,707,288:1	+A	7.3%	intergenic (+106/+36)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,293	Δ1 bp	7.0%	intergenic (+111/+31)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,710,161	T→A	7.5%	A260A (GCT→GCA)	ppc →	phosphoenolpyruvate carboxylase
RA	1,711,846	A→C	6.0%	E822A (GAA→GCA)	ppc →	phosphoenolpyruvate carboxylase
RA	1,712,080	A→T	21.2%	intergenic (+71/‑187)	ppc → / → adk	phosphoenolpyruvate carboxylase/adenylate kinase
RA	1,744,887	T→C	9.5%	intergenic (‑13/+328)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,744,888	T→A	8.0%	intergenic (‑14/+327)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,744,889	G→A	8.6%	intergenic (‑15/+326)	PP_1542 ← / ← PP_1543	hypothetical protein/hypothetical protein
RA	1,754,565	G→A	8.4%	E89E (GAG→GAA)	PP_1556 →	hypothetical protein
RA	1,780,086	T→A	26.8%	intergenic (+45/+61)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,093	C→A	26.4%	intergenic (+52/+54)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,094	G→T	26.0%	intergenic (+53/+53)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,095	C→T	26.7%	intergenic (+54/+52)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,097	T→C	20.0%	intergenic (+56/+50)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,098	G→A	17.4%	intergenic (+57/+49)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,100	A→G	16.7%	intergenic (+59/+47)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,101	A→C	16.4%	intergenic (+60/+46)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,102	T→G	16.7%	intergenic (+61/+45)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,109	T→A	23.5%	intergenic (+68/+38)	PP_1587 → / ← dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,022	T→A	13.1%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	13.1%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	13.1%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,787,066	C→G	8.1%	intergenic (+33/‑149)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,070	T→G	7.7%	intergenic (+37/‑145)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,071	C→T	7.4%	intergenic (+38/‑144)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,072	A→G	7.4%	intergenic (+39/‑143)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,073	C→A	7.7%	intergenic (+40/‑142)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,787,077	C→G	7.7%	intergenic (+44/‑138)	tsf → / → pyrH	elongation factor Ts/uridylate kinase
RA	1,810,280	C→A	6.3%	intergenic (+41/‑128)	eno → / → ftsB	enolase/cell division protein
RA	1,810,284:1	+A	6.3%	intergenic (+45/‑124)	eno → / → ftsB	enolase/cell division protein
RA	1,810,289	Δ1 bp	6.3%	intergenic (+50/‑119)	eno → / → ftsB	enolase/cell division protein
RA	1,810,294	T→G	7.8%	intergenic (+55/‑114)	eno → / → ftsB	enolase/cell division protein
RA	1,835,835	A→T	7.5%	L152* (TTG→TAG) ‡	yohC ←	inner membrane protein
RA	1,835,836	A→T	7.5%	L152M (TTG→ATG) ‡	yohC ←	inner membrane protein
RA	1,846,286	T→A	5.1%	W193R (TGG→AGG)	pfeS‑II →	histidine kinase
RA	1,850,295	G→A	6.2%	R279H (CGC→CAC)	rlmD →	23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD
RA	1,859,101	C→A	6.0%	intergenic (+21/+80)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,108	C→G	7.6%	intergenic (+28/+73)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,114	A→T	5.9%	intergenic (+34/+67)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,120	C→G	7.3%	intergenic (+40/+61)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,126	T→C	6.3%	intergenic (+46/+55)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,859,127	T→G	6.3%	intergenic (+47/+54)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,871,088	C→T	8.1%	A121V (GCG→GTG)	cobC →	adenosylcobinamide‑phosphate synthase subunit beta
RA	1,886,588	A→G	7.2%	I419V (ATC→GTC)	rmuC →	DNA recombination limiting inversions protein
RA	1,886,595	A→T	7.5%	D421V (GAC→GTC)	rmuC →	DNA recombination limiting inversions protein
RA	1,886,602	C→T	8.3%	D423D (GAC→GAT)	rmuC →	DNA recombination limiting inversions protein
RA	1,891,038	A→T	6.1%	A180A (GCT→GCA)	PP_1696 ←	membrane protein
RA	1,899,807	A→T	6.8%	K120* (AAG→TAG)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,915,598:1	+A	12.7%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,602	T→A	12.1%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,605	Δ1 bp	12.1%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,921,549	T→A	14.2%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,550	T→A	13.0%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,967,646	C→G	7.3%	G115A (GGC→GCC) ‡	yciK ←	putative oxidoreductase
RA	1,967,647	C→G	7.2%	G115R (GGC→CGC) ‡	yciK ←	putative oxidoreductase
RA	1,969,465	A→G	6.5%	W19R (TGG→CGG)	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,969,466	G→C	6.2%	R18R (CGC→CGG) ‡	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,969,467	C→T	6.1%	R18H (CGC→CAC) ‡	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,975,827	C→G	5.1%	T253T (ACC→ACG)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,975,828	C→G	5.1%	R254G (CGT→GGT)	pheA →	bifunctional chorismate mutase/prephenate dehydratase
RA	1,987,992	C→A	7.6%	R152R (CGC→CGA)	PP_1779 →	lipopolysaccharide ABC transporter ATP‑binding protein
RA	1,987,993	G→C	6.4%	V153L (GTC→CTC) ‡	PP_1779 →	lipopolysaccharide ABC transporter ATP‑binding protein
RA	1,987,994	T→G	6.3%	V153G (GTC→GGC) ‡	PP_1779 →	lipopolysaccharide ABC transporter ATP‑binding protein
RA	1,990,737	C→T	6.2%	Q663* (CAA→TAA)	PP_1780 →	mannosyltransferase
RA	1,998,668	A→T	6.7%	M271K (ATG→AAG)	rffG ←	dTDP‑glucose 4,6‑dehydratase
RA	1,998,674	T→A	6.9%	D269V (GAC→GTC)	rffG ←	dTDP‑glucose 4,6‑dehydratase
RA	1,998,680	A→T	6.6%	L267H (CTT→CAT)	rffG ←	dTDP‑glucose 4,6‑dehydratase
RA	2,021,770	G→A	7.5%	intergenic (+307/‑132)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,771	G→C	9.0%	intergenic (+308/‑131)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,772	T→C	7.4%	intergenic (+309/‑130)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,779	A→T	7.1%	intergenic (+316/‑123)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,780	C→A	6.8%	intergenic (+317/‑122)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,033,374	C→G	22.0%	I285M (ATC→ATG)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,033,379	T→G	12.5%	L287R (CTG→CGG)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,033,383	C→G	12.5%	A288A (GCC→GCG)	pgi‑I →	glucose 6‑phosphate isomerase
RA	2,042,503	A→C	10.4%	V18G (GTG→GGG)	PP_1816 ←	alcohol dehydrogenase
RA	2,063,221	T→G	16.1%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,068,151	A→T	7.5%	intergenic (‑96/+25)	plsC ← / ← PP_1845	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/enoyl‑CoA hydratase/isomerase family protein
RA	2,074,029	C→G	7.7%	intergenic (‑41/+162)	PP_1849 ← / ← ygaY	hypothetical protein/transporter YgaY
RA	2,074,031	G→A	7.7%	intergenic (‑43/+160)	PP_1849 ← / ← ygaY	hypothetical protein/transporter YgaY
RA	2,077,196	G→A	8.2%	intergenic (‑38/‑81)	PP_1852 ← / → PP_1853	enoyl‑ACP reductase/LysR family transcriptional regulator
RA	2,083,641	T→G	8.9%	F99V (TTC→GTC) ‡	PP_1862 →	membrane protein
RA	2,083,642	T→A	8.9%	F99Y (TTC→TAC) ‡	PP_1862 →	membrane protein
RA	2,083,643	C→A	8.8%	F99L (TTC→TTA) ‡	PP_1862 →	membrane protein
RA	2,087,373	T→C	7.3%	intergenic (+186/+732)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,973	G→A	7.8%	G89G (GGC→GGT)	ygiD ←	4,5‑DOPA‑dioxygenase
RA	2,102,752	C→G	5.7%	noncoding (35/76 nt)	PP_t21 →	tRNA‑Gly
RA	2,109,019	A→T	7.5%	I104N (ATT→AAT)	PP_1881 ←	hypothetical protein
RA	2,118,718	G→C	9.4%	P798P (CCG→CCC)	PP_1884 →	hypothetical protein
RA	2,118,720	T→A	8.1%	L799Q (CTG→CAG)	PP_1884 →	hypothetical protein
RA	2,118,723	C→G	8.1%	P800R (CCG→CGG)	PP_1884 →	hypothetical protein
RA	2,118,726	T→A	8.7%	L801Q (CTG→CAG)	PP_1884 →	hypothetical protein
RA	2,118,728	G→C	9.7%	G802R (GGG→CGG)	PP_1884 →	hypothetical protein
RA	2,132,041	G→A	5.5%	A53V (GCA→GTA)	fimD ←	type I pili subunit FimD
RA	2,137,005	A→T	7.5%	intergenic (‑255/‑136)	fadE ← / → gstB	medium‑long chain acyl‑CoA dehydrogenase/glutathione S‑transferase
RA	2,137,006	A→T	9.1%	intergenic (‑256/‑135)	fadE ← / → gstB	medium‑long chain acyl‑CoA dehydrogenase/glutathione S‑transferase
RA	2,137,007	A→T	8.5%	intergenic (‑257/‑134)	fadE ← / → gstB	medium‑long chain acyl‑CoA dehydrogenase/glutathione S‑transferase
RA	2,138,409	T→G	9.0%	L171R (CTG→CGG)	yadG →	ABC transporter ATP‑binding protein
RA	2,138,414	C→A	9.1%	R173S (CGC→AGC)	yadG →	ABC transporter ATP‑binding protein
RA	2,139,622	T→G	6.0%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,631	A→T	5.5%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,637	C→A	5.2%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,141,384	T→A	8.4%	L374M (TTG→ATG) ‡	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,141,385	T→A	8.4%	L374* (TTG→TAG) ‡	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,155,091	A→T	5.3%	E87V (GAA→GTA)	PP_1910 →	hypothetical protein
RA	2,155,100	A→T	5.4%	Y90F (TAC→TTC)	PP_1910 →	hypothetical protein
RA	2,155,104	C→T	6.6%	A91A (GCC→GCT)	PP_1910 →	hypothetical protein
RA	2,171,501	T→C	5.1%	intergenic (+36/+367)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,171,502	T→A	5.1%	intergenic (+37/+366)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,189,575	G→A	7.1%	A148T (GCT→ACT) ‡	PP_1937 →	helicase
RA	2,189,576	C→G	6.8%	A148G (GCT→GGT) ‡	PP_1937 →	helicase
RA	2,189,577	T→C	6.9%	A148A (GCT→GCC) ‡	PP_1937 →	helicase
RA	2,189,646	G→T	5.4%	V171V (GTG→GTT)	PP_1937 →	helicase
RA	2,191,853	A→G	15.3%	Q907R (CAG→CGG)	PP_1937 →	helicase
RA	2,191,856	C→T	14.6%	P908L (CCG→CTG)	PP_1937 →	helicase
RA	2,193,369	A→G	6.4%	Q14R (CAG→CGG)	PP_1939 →	hypothetical protein
RA	2,204,071	C→T	7.0%	R250W (CGG→TGG)	PP_1948 →	benzaldehyde dehydrogenase
RA	2,238,142	A→T	8.6%	F148I (TTC→ATC)	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,238,143	C→G	8.6%	M147I (ATG→ATC) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,238,144	A→T	8.6%	M147K (ATG→AAG) ‡	PP_1975 ←	EmrB/QacA family drug resistance transporter
RA	2,247,156	G→T	9.3%	R815R (CGG→AGG)	PP_1983 ←	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,247,161	A→C	9.4%	L813R (CTG→CGG)	PP_1983 ←	PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,271,666	C→T	5.4%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	5.4%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,052	A→G	6.3%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,062	C→G	5.7%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	5.9%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	7.2%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	6.1%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,282,730	T→C	5.9%	intergenic (‑122/+107)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,770	T→G	28.1%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	27.3%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	27.1%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	33.3%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,681	T→A	8.9%	Y270N (TAC→AAC)	PP_2016 →	hypothetical protein
RA	2,287,684	C→T	7.7%	Q271* (CAG→TAG) ‡	PP_2016 →	hypothetical protein
RA	2,287,685	A→G	7.5%	Q271R (CAG→CGG) ‡	PP_2016 →	hypothetical protein
RA	2,287,688	T→A	7.5%	L272* (TTG→TAG)	PP_2016 →	hypothetical protein
RA	2,290,396	C→T	6.8%	intergenic (+21/‑254)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,397	C→G	6.5%	intergenic (+22/‑253)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,398	A→G	6.7%	intergenic (+23/‑252)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,307,263:1	+C	5.3%	coding (367/1077 nt)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,307,269	T→C	6.9%	K121E (AAG→GAG)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,307,274	A→T	7.1%	L119Q (CTG→CAG)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,307,279	G→A	6.0%	L117L (CTC→CTT)	PP_2029 ←	von Willebrand factor type A domain‑containing protein
RA	2,311,048	G→A	6.0%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	5.9%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,329,848	C→T	5.5%	G67G (GGC→GGT)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,335,607	G→T	5.1%	L284M (CTG→ATG)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,335,608	C→G	5.9%	M283I (ATG→ATC) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,335,609	A→C	5.9%	M283R (ATG→AGG) ‡	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,340,703	A→C	5.4%	intergenic (+37/‑78)	dctA‑II → / → yraO	C4‑dicarboxylate transport protein/transporter YraO
RA	2,347,618	G→C	6.4%	V307L (GTG→CTG) ‡	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,347,620	G→C	6.5%	V307V (GTG→GTC) ‡	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,347,622	G→C	6.5%	S308T (AGC→ACC)	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,350,521	G→A	5.6%	G910S (GGC→AGC) ‡	PP_2065 →	multidrug RND transporter
RA	2,350,523	C→G	5.5%	G910G (GGC→GGG) ‡	PP_2065 →	multidrug RND transporter
RA	2,350,525	T→C	5.5%	L911P (CTG→CCG)	PP_2065 →	multidrug RND transporter
RA	2,350,692	A→G	5.1%	S967G (AGC→GGC)	PP_2065 →	multidrug RND transporter
RA	2,368,284	A→C	7.2%	K368Q (AAG→CAG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,287	G→T	8.0%	E369* (GAA→TAA) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,288	A→T	7.1%	E369V (GAA→GTA) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,289	A→C	7.0%	E369D (GAA→GAC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,368,292	G→T	7.6%	L370L (CTG→CTT)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,371,613	G→T	6.4%	A1477A (GCG→GCT)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,371,620	A→C	6.2%	S1480R (AGC→CGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,381,402	T→G	7.2%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,403	C→A	7.4%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,401,603	G→A	5.7%	L96L (CTG→TTG)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,606	C→G	5.8%	D95H (GAC→CAC)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,401,609	T→C	5.8%	S94G (AGT→GGT)	dgt ←	deoxyguanosinetriphosphate triphosphohydrolase‑like protein
RA	2,402,311	A→T	5.9%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,412,904	G→C	8.2%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,905	G→C	8.2%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,416,554	A→T	5.4%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,416,555	A→T	5.1%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,420,598	Δ1 bp	5.6%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	5.5%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,440,146	T→G	5.1%	L296R (CTC→CGC)	pcaF‑II →	beta‑ketoadipyl‑CoA thiolase subunit beta
RA	2,440,149	A→C	5.0%	K297T (AAG→ACG)	pcaF‑II →	beta‑ketoadipyl‑CoA thiolase subunit beta
RA	2,443,500	T→A	5.5%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,443,501	T→A	5.5%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,443,502	T→A	5.5%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,447,853	A→G	5.9%	L1077P (CTG→CCG)	PP_2146 ←	SNF2/RAD54 family helicase
RA	2,474,143	T→C	12.7%	intergenic (‑48/+132)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,148	T→C	12.2%	intergenic (‑53/+127)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,149	C→T	12.2%	intergenic (‑54/+126)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,154	A→G	11.9%	intergenic (‑59/+121)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,155	G→A	13.1%	intergenic (‑60/+120)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,160	G→A	12.6%	intergenic (‑65/+115)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,474,162	A→G	11.9%	intergenic (‑67/+113)	PP_2167 ← / ← tal	PhoD‑like phosphatase/transaldolase
RA	2,478,840	G→A	6.5%	intergenic (+93/+352)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,841	C→A	7.1%	intergenic (+94/+351)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,845	G→C	6.2%	intergenic (+98/+347)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,849	T→G	6.4%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,850	T→C	6.3%	intergenic (+103/+342)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,488,197	G→C	5.9%	intergenic (+53/‑349)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,203	G→A	5.3%	intergenic (+59/‑343)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,204	T→G	5.0%	intergenic (+60/‑342)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,206	T→C	5.4%	intergenic (+62/‑340)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,488,212	G→C	6.1%	intergenic (+68/‑334)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,498,215	A→G	10.7%	H39R (CAC→CGC) ‡	PP_2193 →	ferric siderophore receptor
RA	2,498,216	C→T	10.7%	H39H (CAC→CAT) ‡	PP_2193 →	ferric siderophore receptor
RA	2,509,062	G→C	5.1%	A18G (GCC→GGC)	PP_2203 ←	hypothetical protein
RA	2,536,624	G→A	5.9%	I805I (ATC→ATT)	mrpAB ←	K(+)/H(+) antiporter subunit A/B
RA	2,571,106	G→A	12.2%	intergenic (‑24/+20)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,571,108	C→G	12.2%	intergenic (‑26/+18)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,571,110	T→C	11.3%	intergenic (‑28/+16)	PP_2254 ← / ← dctA‑III	GntR family transcriptional regulator/C4‑dicarboxylate transport protein
RA	2,604,864	C→A	9.7%	intergenic (+26/‑36)	PP_2282 → / → PP_2283	minor capsid protein 10/tail tubular protein A
RA	2,604,865	T→G	9.7%	intergenic (+27/‑35)	PP_2282 → / → PP_2283	minor capsid protein 10/tail tubular protein A
RA	2,608,572	G→A	7.1%	G95S (GGC→AGC)	PP_2285 →	hypothetical protein
RA	2,623,488	G→C	6.8%	A27P (GCG→CCG)	PP_2295 →	antirestriction protein
RA	2,627,694	C→T	6.6%	A260V (GCC→GTC) ‡	tig →	trigger factor
RA	2,627,695	C→T	6.6%	A260A (GCC→GCT) ‡	tig →	trigger factor
RA	2,628,386	A→C	6.2%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,387	G→T	6.3%	G17C (GGC→TGC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,630,157	A→C	5.7%	K372Q (AAG→CAG)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,161	C→G	5.0%	A373G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,163	G→C	5.0%	V374L (GTT→CTT)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,168	A→G	5.1%	A375A (GCA→GCG)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,630,169	C→T	5.0%	R376C (CGC→TGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,669,671	T→G	17.4%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,674	C→A	16.0%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,675,166	T→G	5.3%	P323P (CCA→CCC)	PP_2344 ←	hypothetical protein
RA	2,675,424	G→A	11.7%	A237A (GCC→GCT)	PP_2344 ←	hypothetical protein
RA	2,676,076	A→T	8.0%	L20* (TTG→TAG)	PP_2344 ←	hypothetical protein
RA	2,678,019	A→G	6.0%	Q120Q (CAA→CAG)	PP_2348 →	sensor histidine kinase
RA	2,699,833	G→C	8.6%	P226P (CCC→CCG) ‡	fsr‑II ←	fosmidomycin efflux system
RA	2,699,834	G→C	10.1%	P226R (CCC→CGC) ‡	fsr‑II ←	fosmidomycin efflux system
RA	2,699,835	G→C	8.6%	P226A (CCC→GCC) ‡	fsr‑II ←	fosmidomycin efflux system
RA	2,742,917	C→T	10.0%	H5Y (CAC→TAC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,742,918	A→G	10.2%	H5R (CAC→CGC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,774,810	T→C	5.4%	P234P (CCA→CCG) ‡	PP_5521 ←	hypothetical protein
RA	2,774,811	G→C	5.6%	P234R (CCA→CGA) ‡	PP_5521 ←	hypothetical protein
RA	2,774,812	G→A	5.6%	P234S (CCA→TCA) ‡	PP_5521 ←	hypothetical protein
RA	2,780,131	T→A	8.6%	intergenic (+17/‑96)	nfnB → / → PP_2433	6,7‑dihydropteridine reductase/hypothetical protein
RA	2,780,132	T→A	8.7%	intergenic (+18/‑95)	nfnB → / → PP_2433	6,7‑dihydropteridine reductase/hypothetical protein
RA	2,787,629	C→G	6.1%	intergenic (+76/‑49)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,630	C→G	6.1%	intergenic (+77/‑48)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,790,697	G→T	6.4%	S284* (TCG→TAG)	sstT ←	serine/threonine transporter SstT
RA	2,790,699	G→C	6.7%	Y283* (TAC→TAG) ‡	sstT ←	serine/threonine transporter SstT
RA	2,790,701	A→C	6.3%	Y283D (TAC→GAC) ‡	sstT ←	serine/threonine transporter SstT
RA	2,793,752	G→T	18.6%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,755	A→C	18.6%	intergenic (+64/+63)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,756	C→A	18.2%	intergenic (+65/+62)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,757	T→G	18.6%	intergenic (+66/+61)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,758	G→T	21.0%	intergenic (+67/+60)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,761	A→C	20.5%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,796,836	G→T	12.7%	intergenic (+20/‑112)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,837	A→T	12.6%	intergenic (+21/‑111)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,838	A→T	12.7%	intergenic (+22/‑110)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,839	A→C	12.3%	intergenic (+23/‑109)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,796,855	C→G	7.9%	intergenic (+39/‑93)	PP_t43 → / → PP_2449	tRNA‑Val/hypothetical protein
RA	2,801,767	G→A	6.8%	G51S (GGC→AGC)	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,802,991	A→C	10.9%	K459Q (AAG→CAG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,802,992	A→T	10.5%	K459M (AAG→ATG) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,802,993	G→T	10.9%	K459N (AAG→AAT) ‡	rbsA‑I →	ribose ABC transporter ‑ ATP‑binding subunit
RA	2,810,593	C→A	6.6%	P334T (CCG→ACG)	thrS →	threonine‑‑tRNA ligase
RA	2,810,598	C→G	6.6%	C335W (TGC→TGG)	thrS →	threonine‑‑tRNA ligase
RA	2,841,935	T→A	6.5%	intergenic (‑114/+138)	yqhD ← / ← PP_2493	NAD(P)‑dependent alcohol dehydrogenase/RadC family protein
RA	2,841,936	T→A	6.5%	intergenic (‑115/+137)	yqhD ← / ← PP_2493	NAD(P)‑dependent alcohol dehydrogenase/RadC family protein
RA	2,868,540	A→T	7.1%	intergenic (+79/‑852)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,907,691	T→A	13.0%	Q335L (CAG→CTG)	hasE ←	secretion metalloprotease
RA	2,907,694	A→C	13.3%	L334R (CTG→CGG)	hasE ←	secretion metalloprotease
RA	2,907,697	G→T	13.2%	P333Q (CCG→CAG)	hasE ←	secretion metalloprotease
RA	2,907,700	T→A	13.6%	Q332L (CAG→CTG)	hasE ←	secretion metalloprotease
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,935,858	C→G	8.6%	intergenic (+153/‑109)	PP_2568 → / → PP_2569	ring‑cleaving dioxygenase/MHS family metabolite MFS transporter
RA	2,947,556	T→C	7.1%	intergenic (‑35/‑177)	yijP ← / → PP_2580	phosphoethanolamine transferase CptA/hypothetical protein
RA	2,950,337	G→A	9.5%	A295A (GCC→GCT)	oguA ←	8‑oxoguanine deaminase
RA	2,951,334	G→C	16.2%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	14.3%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	15.2%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	14.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,970,504	A→C	8.3%	G281G (GGA→GGC)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,970,506	G→T	7.4%	G282V (GGC→GTC)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,970,509	A→C	9.7%	D283A (GAC→GCC)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,970,511	G→T	8.7%	A284S (GCC→TCC)	PP_2599 →	chemotaxis sensory transducer family protein
RA	2,973,988	C→T	9.3%	intergenic (‑115/‑80)	PP_2600 ← / → PP_2601	hypothetical protein/IclR family transcriptional regulator
RA	2,992,857	G→T	9.1%	A72A (GCC→GCA) ‡	PP_2616 ←	hypothetical protein
RA	2,992,859	C→G	7.2%	A72P (GCC→CCC) ‡	PP_2616 ←	hypothetical protein
RA	2,992,862	C→G	7.2%	D71H (GAT→CAT)	PP_2616 ←	hypothetical protein
RA	2,992,864	A→C	7.1%	L70R (CTG→CGG)	PP_2616 ←	hypothetical protein
RA	3,006,468	T→G	8.8%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	8.0%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	8.3%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	8.5%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,008,313	A→G	11.3%	M261T (ATG→ACG)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,008,318	C→T	11.5%	S259S (TCG→TCA)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,010,966	G→A	8.8%	P9P (CCG→CCA)	bcsG →	endoglucanase
RA	3,010,969	A→C	8.7%	V10V (GTA→GTC)	bcsG →	endoglucanase
RA	3,010,971	T→A	8.1%	L11Q (CTG→CAG)	bcsG →	endoglucanase
RA	3,010,976	C→A	8.5%	R13S (CGC→AGC)	bcsG →	endoglucanase
RA	3,010,979	T→G	8.8%	W14G (TGG→GGG)	bcsG →	endoglucanase
RA	3,030,413	C→G	6.2%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,417	G→C	5.4%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,420	G→C	5.2%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,040,596	G→C	7.9%	G67R (GGC→CGC)	PP_2652 →	hydratase/decarboxylase
RA	3,075,511	A→T	5.7%	I181N (ATC→AAC)	PP_2685 ←	hypothetical protein
RA	3,081,130	T→G	5.1%	H462P (CAT→CCT)	PP_2691 ←	hypothetical protein
RA	3,083,116	T→C	6.9%	M318V (ATG→GTG)	PP_2692 ←	BCCT family transporter
RA	3,102,518	T→G	6.5%	Y117D (TAC→GAC)	PP_2712 →	hypothetical protein
RA	3,104,299	T→A	5.8%	L276Q (CTG→CAG)	PP_2714 →	sensor histidine kinase
RA	3,140,564	A→C	7.6%	Q373P (CAG→CCG)	sfnB →	SfnB family sulfur acquisition oxidoreductase
RA	3,143,200	G→A	6.3%	A42T (GCC→ACC)	rbsA‑II →	ribose ABC transporter ‑ ATP‑binding subunit
RA	3,152,386	G→A	6.7%	G181S (GGT→AGT)	PP_2768 →	branched‑chain amino acid ABC transporter permease
RA	3,154,866	A→G	6.9%	E357G (GAA→GGA)	PP_2770 →	hypothetical protein
RA	3,158,943	T→G	9.5%	L321R (CTC→CGC)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,164,337	C→T	7.1%	A376V (GCC→GTC)	PP_2778 →	3‑oxoacyl‑ACP synthase
RA	3,176,459	T→A	5.7%	V587E (GTG→GAG)	PP_2787 →	transporter
RA	3,177,424	A→C	13.9%	D113E (GAT→GAG)	PP_2788 ←	MerR family transcriptional regulator
RA	3,177,427	C→A	15.8%	K112N (AAG→AAT) ‡	PP_2788 ←	MerR family transcriptional regulator
RA	3,177,428	T→A	13.9%	K112M (AAG→ATG) ‡	PP_2788 ←	MerR family transcriptional regulator
RA	3,177,429	T→G	13.8%	K112Q (AAG→CAG) ‡	PP_2788 ←	MerR family transcriptional regulator
RA	3,177,432	G→T	14.0%	L111I (CTC→ATC)	PP_2788 ←	MerR family transcriptional regulator
RA	3,189,278	G→C	8.8%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,279	G→C	8.2%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,193,900	G→T	6.6%	L324M (CTG→ATG)	PP_2802 ←	amino acid permease family protein
RA	3,207,889	T→C	8.5%	F513S (TTC→TCC)	PP_2812 →	transporter
RA	3,208,582	T→C	5.2%	V744A (GTG→GCG)	PP_2812 →	transporter
RA	3,211,101	A→G	5.4%	E46E (GAA→GAG)	PP_2815 →	hypothetical protein
RA	3,215,672	C→G	5.4%	L529L (CTC→CTG)	mexD →	multidrug RND transporter MexD
RA	3,219,674	C→T	6.5%	D56N (GAC→AAC)	PP_2821 ←	hypothetical protein
RA	3,254,842	T→A	13.8%	K299M (AAG→ATG) ‡	PP_2852 ←	sulfatase domain‑containing protein
RA	3,254,843	T→A	13.8%	K299* (AAG→TAG) ‡	PP_2852 ←	sulfatase domain‑containing protein
RA	3,261,387	T→A	6.4%	intergenic (‑129/+169)	PP_2858 ← / ← PP_2859	hypothetical protein/hypothetical protein
RA	3,261,393	C→T	6.3%	intergenic (‑135/+163)	PP_2858 ← / ← PP_2859	hypothetical protein/hypothetical protein
RA	3,272,149	C→G	6.4%	intergenic (‑65/‑110)	PP_2869 ← / → PP_2870	FMN‑binding oxidoreductase/spermidine/putrescine‑binding protein
RA	3,298,551	A→T	8.5%	Q256H (CAA→CAT)	pvdQ →	acyl‑homoserine lactone acylase PvdQ
RA	3,300,855	A→T	6.4%	S18T (TCC→ACC)	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,857	A→T	6.6%	I17N (ATT→AAT)	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,859	A→T	6.6%	D16E (GAT→GAA) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,300,860	T→C	6.5%	D16G (GAT→GGT) ‡	lpxH ←	UDP‑2,3‑diacylglucosamine hydrolase
RA	3,301,892	G→A	8.8%	D81N (GAT→AAT)	glnS →	glutamine‑‑tRNA ligase
RA	3,313,825	C→A	5.5%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,313,828	T→G	5.2%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,333,354	G→A	8.7%	P151L (CCG→CTG)	PP_2931 ←	hypothetical protein
RA	3,333,363	T→C	8.7%	Q148R (CAG→CGG)	PP_2931 ←	hypothetical protein
RA	3,383,235	A→G	6.6%	R14R (AGA→AGG)	PP_5547 →	hypothetical protein
RA	3,402,640	G→T	7.4%	G5* (GGA→TGA)	PP_3011 →	hypothetical protein
RA	3,411,657	G→T	5.2%	K57N (AAG→AAT)	PP_5551 →	hypothetical protein
RA	3,460,226	Δ1 bp	6.7%	coding (136/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,460,230:1	+A	6.6%	coding (132/1446 nt)	PP_3075 ←	transcriptional regulator
RA	3,536,544	C→G	6.7%	A61G (GCC→GGC)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,540,058	A→G	5.3%	N249D (AAT→GAT)	PP_3127 →	exopolysaccharide transport protein
RA	3,541,778	C→T	8.0%	L315L (TTG→TTA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,318	A→G	7.4%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,321	C→T	6.6%	P134P (CCG→CCA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,546,056	A→G	6.2%	V302A (GTG→GCG)	PP_3131 ←	membrane protein
RA	3,549,920	C→G	7.5%	H418D (CAC→GAC) ‡	PP_3133 →	oxidoreductase
RA	3,549,921	A→T	6.3%	H418L (CAC→CTC) ‡	PP_3133 →	oxidoreductase
RA	3,549,922	C→G	7.6%	H418Q (CAC→CAG) ‡	PP_3133 →	oxidoreductase
RA	3,556,415	C→G	6.1%	P278A (CCC→GCC)	PP_3140 →	group 2 family glycosyl transferase
RA	3,570,114	C→T	9.7%	A251T (GCC→ACC)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,571,676	G→C	5.3%	P235P (CCG→CCC)	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,571,677	C→G	5.3%	R236G (CGC→GGC)	yneJ →	LysR family DNA‑binding transcriptional regulator
RA	3,579,070	T→A	7.5%	F142I (TTT→ATT) ‡	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,579,071	T→A	7.6%	F142Y (TTT→TAT) ‡	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,579,072	T→A	7.6%	F142L (TTT→TTA) ‡	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,630,322	T→C	12.5%	W315R (TGG→CGG) ‡	PP_3200 →	hypothetical protein
RA	3,630,323	G→A	13.0%	W315* (TGG→TAG) ‡	PP_3200 →	hypothetical protein
RA	3,633,987	C→G	6.5%	P129A (CCG→GCG)	PP_3202 →	transporter
RA	3,652,702	T→A	7.4%	H196Q (CAT→CAA)	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,690,488	A→G	6.8%	K257E (AAG→GAG)	PP_3255 →	non‑homologous end joining protein
RA	3,694,030	C→A	7.9%	R713L (CGA→CTA)	ligD ←	DNA ligase D
RA	3,703,267	Δ1 bp	7.6%	coding (91/270 nt)	PP_5596 →	hypothetical protein
RA	3,703,273:1	+C	8.2%	coding (97/270 nt)	PP_5596 →	hypothetical protein
RA	3,704,538	A→G	5.8%	G488G (GGT→GGC)	paaZ ←	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
RA	3,711,168	C→T	10.9%	G175S (GGC→AGC)	paaC ←	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
RA	3,711,169	A→G	7.1%	A174A (GCT→GCC)	paaC ←	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
RA	3,715,358	A→T	11.7%	D166E (GAT→GAA)	paaJ ←	3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
RA	3,735,139	Δ1 bp	7.8%	coding (36/3093 nt)	PP_3302 →	RND family transporter
RA	3,735,143:1	+T	8.2%	coding (40/3093 nt)	PP_3302 →	RND family transporter
RA	3,753,595	G→T	12.5%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,598	A→C	11.7%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,755,634	G→A	7.0%	G359R (GGG→AGG)	PP_3319 →	GGDEF domain‑containing sensory box protein
RA	3,766,151	G→T	10.2%	R161L (CGA→CTA) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,766,152	A→C	10.3%	R161R (CGA→CGC) ‡	PP_5599 →	LysR family transcriptional regulator
RA	3,794,770	A→G	7.4%	L562L (TTG→CTG)	fcs ←	feruloyl‑CoA‑synthetase
RA	3,805,092	Δ1 bp	7.3%	coding (67/618 nt)	PP_3363 ←	thymidylate kinase
RA	3,807,784	C→T	6.8%	R800R (CGC→CGT)	PP_3364 →	two‑component system response regulator
RA	3,812,152	C→G	5.3%	P159R (CCG→CGG)	PP_3368 →	MFS transporter
RA	3,831,463	G→C	6.2%	R221G (CGC→GGC)	PP_3384 ←	gluconate 2‑dehydrogenase gamma subunit
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,718	C→G	8.0%	intergenic (‑85/+13)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,719	A→G	10.5%	intergenic (‑86/+12)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,720	G→C	10.5%	intergenic (‑87/+11)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,721	C→T	8.8%	intergenic (‑88/+10)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,722	C→G	8.7%	intergenic (‑89/+9)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,853,118	T→A	15.5%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,865,969	A→G	8.0%	A303A (GCT→GCC) ‡	PP_3415 ←	LacI family transcriptional regulator
RA	3,865,971	C→G	8.3%	A303P (GCT→CCT) ‡	PP_3415 ←	LacI family transcriptional regulator
RA	3,865,973	C→T	8.3%	R302Q (CGG→CAG)	PP_3415 ←	LacI family transcriptional regulator
RA	3,879,748	T→C	6.6%	F528S (TTC→TCC)	mexF →	multidrug RND transporter MexF
RA	3,893,482	G→A	5.9%	E282E (GAG→GAA)	rarD →	chloramphenicol‑sensitive protein
RA	3,893,484	G→C	5.9%	G283A (GGC→GCC)	rarD →	chloramphenicol‑sensitive protein
RA	3,893,486	T→C	6.0%	F284L (TTC→CTC)	rarD →	chloramphenicol‑sensitive protein
RA	3,912,839	T→G	5.9%	T414P (ACC→CCC)	PP_3453 ←	sensor protein RstB
RA	3,912,842	A→G	5.9%	L413L (TTG→CTG)	PP_3453 ←	sensor protein RstB
RA	3,912,847	C→G	6.4%	G411A (GGC→GCC)	PP_3453 ←	sensor protein RstB
RA	3,912,855	C→A	6.4%	G408G (GGG→GGT)	PP_3453 ←	sensor protein RstB
RA	3,920,270	A→G	6.7%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,929,797	G→T	25.4%	intergenic (+20/+18)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,929,798	A→T	22.4%	intergenic (+21/+17)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,929,799	A→C	31.3%	intergenic (+22/+16)	PP_3464 → / ← PP_5603	hypothetical protein/FAD dependent oxidoreductase
RA	3,938,221	T→A	5.2%	F75I (TTT→ATT) ‡	PP_3471 →	hypothetical protein
RA	3,938,222	T→A	5.4%	F75Y (TTT→TAT) ‡	PP_3471 →	hypothetical protein
RA	3,938,223	T→A	5.4%	F75L (TTT→TTA) ‡	PP_3471 →	hypothetical protein
RA	3,944,712	T→C	9.8%	S83G (AGC→GGC)	PP_3480 ←	hypothetical protein
RA	3,944,713	G→C	9.8%	D82E (GAC→GAG)	PP_3480 ←	hypothetical protein
RA	3,944,718	G→C	10.4%	L81V (CTC→GTC)	PP_3480 ←	hypothetical protein
RA	3,944,719	G→A	10.4%	A80A (GCC→GCT)	PP_3480 ←	hypothetical protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,401	Δ1 bp	5.9%	coding (496/666 nt)	PP_3487 ←	hypothetical protein
RA	3,960,613	T→C	8.7%	intergenic (‑229/‑100)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,615	T→A	8.5%	intergenic (‑231/‑98)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,617	G→A	8.5%	intergenic (‑233/‑96)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,962,512	T→A	6.2%	L237Q (CTG→CAG)	PP_3492 →	acyl‑CoA dehydrogenase
RA	3,966,762	C→A	6.1%	L319M (CTG→ATG) ‡	ydcP →	peptidase
RA	3,966,763	T→G	6.1%	L319R (CTG→CGG) ‡	ydcP →	peptidase
RA	4,026,304	C→T	5.9%	intergenic (‑102/+77)	PP_3550 ← / ← PP_3551	transcriptional regulator EmrR/LuxR family transcriptional regulator
RA	4,027,746	T→A	7.9%	E228D (GAA→GAT)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,751	T→A	8.1%	I227F (ATC→TTC)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,049,907	A→G	25.0%	intergenic (+40/‑61)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,910	C→G	20.0%	intergenic (+43/‑58)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,049,913	C→T	19.9%	intergenic (+46/‑55)	quiA → / → oprB‑III	quinate dehydrogenase/carbohydrate‑selective porin
RA	4,063,001	C→G	5.1%	E446D (GAG→GAC) ‡	PP_3581 ←	membrane protein
RA	4,063,002	T→A	5.1%	E446V (GAG→GTG) ‡	PP_3581 ←	membrane protein
RA	4,063,003	C→G	5.2%	E446Q (GAG→CAG) ‡	PP_3581 ←	membrane protein
RA	4,086,043	G→A	8.1%	A248T (GCC→ACC)	amaD →	D‑lysine oxidase
RA	4,111,713	T→A	10.4%	V181D (GTC→GAC)	PP_3617 →	membrane protein
RA	4,111,716	A→T	10.2%	K182M (AAG→ATG)	PP_3617 →	membrane protein
RA	4,111,719	A→T	10.0%	H183L (CAT→CTT)	PP_3617 →	membrane protein
RA	4,111,722	T→A	10.6%	V184D (GTC→GAC)	PP_3617 →	membrane protein
RA	4,134,274	C→T	5.9%	S252S (TCG→TCA)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,144,248	T→A	7.4%	I93I (ATT→ATA)	PP_3648 →	carboxymuconolactone decarboxylase family protein
RA	4,164,690	A→T	8.8%	intergenic (+40/+77)	PP_3665 → / ← PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
RA	4,164,691	A→T	8.8%	intergenic (+41/+76)	PP_3665 → / ← PP_3666	AraC family transcriptional regulator/MHS family metabolite MFS transporter
RA	4,201,454	C→G	7.0%	V2108L (GTC→CTC)	PP_3691 ←	DNA helicase‑related protein
RA	4,212,999	T→C	5.5%	T242T (ACA→ACG)	PP_3695 ←	hypothetical protein
RA	4,224,502	T→G	6.1%	intergenic (‑614/+207)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,224,508	T→C	6.2%	intergenic (‑620/+201)	PP_3703 ← / ← PP_3704	hypothetical protein/hypothetical protein
RA	4,234,559	A→G	6.7%	L169P (CTG→CCG)	PP_3711 ←	diguanylate cyclase
RA	4,267,946	A→T	12.5%	intergenic (‑89/+14)	galP‑IV ← / ← PP_3740	porin‑like protein/MFS transporter
RA	4,282,352	C→A	11.4%	R293L (CGC→CTC)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,355	A→G	11.5%	L292P (CTG→CCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,358	C→T	10.0%	R291Q (CGG→CAG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,361	T→G	10.1%	E290A (GAG→GCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,289,430	T→G	6.6%	K1053Q (AAG→CAG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,432	T→A	6.5%	H1052L (CAC→CTC)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,435	T→A	6.4%	E1051V (GAG→GTG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,437	C→A	6.6%	L1050L (CTG→CTT)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,305,604	G→A	6.1%	R151C (CGC→TGC)	PP_3777 ←	hypothetical protein
RA	4,305,607	G→A	5.9%	Q150* (CAG→TAG)	PP_3777 ←	hypothetical protein
RA	4,305,608	T→C	5.9%	L149L (CTA→CTG)	PP_3777 ←	hypothetical protein
RA	4,305,611	T→C	5.8%	A148A (GCA→GCG)	PP_3777 ←	hypothetical protein
RA	4,314,731	Δ1 bp	9.4%	coding (933/1209 nt)	aspC →	aminotransferase
RA	4,314,735:1	+T	10.2%	coding (937/1209 nt)	aspC →	aminotransferase
RA	4,316,022	A→C	6.3%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	6.2%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,319,052	C→T	5.9%	A8V (GCG→GTG)	PP_3790 →	diaminopimelate epimerase
RA	4,339,609	T→C	5.2%	V239A (GTC→GCC)	ribAB‑II →	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA	4,340,805	G→A	6.8%	A154T (GCC→ACC)	PP_3814 →	polyamine ABC transportersubstrate‑binding protein
RA	4,348,705	A→G	40.2%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,355,046	Δ1 bp	8.1%	coding (246/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,355,050:1	+C	8.2%	coding (250/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,359,451	C→G	7.3%	G169R (GGC→CGC)	PP_3834 ←	hypothetical protein
RA	4,360,762	G→A	7.7%	G120G (GGC→GGT) ‡	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,763	C→T	7.7%	G120D (GGC→GAC) ‡	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,766	A→T	6.5%	I119N (ATT→AAT)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,769	A→G	6.5%	I118T (ATC→ACC) ‡	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,770	T→C	6.5%	I118V (ATC→GTC) ‡	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,375,590	A→C	6.4%	intergenic (‑55/+55)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,591	A→T	6.3%	intergenic (‑56/+54)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,592	A→T	7.1%	intergenic (‑57/+53)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,375,593	G→T	7.3%	intergenic (‑58/+52)	PP_5637 ← / ← PP_3851	hypothetical protein/hypothetical protein
RA	4,386,817	T→C	6.4%	D237G (GAT→GGT)	PP_3863 ←	tail protein
RA	4,399,527	T→C	6.9%	E121E (GAA→GAG)	PP_3878 ←	minor capsid protein C
RA	4,414,110	A→G	6.4%	K261E (AAA→GAA)	PP_5643 →	hypothetical protein
RA	4,415,032	T→C	6.4%	intergenic (+141/+27)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,415,037	G→A	6.7%	intergenic (+146/+22)	PP_5644 → / ← PP_3899	membrane protein/hicB family protein
RA	4,426,462	C→G	6.6%	Y32* (TAC→TAG)	PP_3920 →	putative Phage integrase
RA	4,437,241	T→C	5.5%	V134A (GTG→GCG)	PP_3932 →	diguanylate cyclase
RA	4,445,250	C→G	13.7%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,445,251	C→G	13.7%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,446,491	G→C	9.1%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,494	G→C	9.0%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,456,585	Δ1 bp	6.3%	coding (400/2178 nt)	PP_3950 ←	methyl‑accepting chemotaxis transducer
RA	4,474,687	G→C	5.5%	L283L (CTC→CTG)	PP_3964 ←	transposase
RA	4,474,691	C→G	5.8%	G282A (GGG→GCG)	PP_3964 ←	transposase
RA	4,474,694	G→C	5.9%	S281* (TCA→TGA)	PP_3964 ←	transposase
RA	4,474,698	A→G	5.9%	F280L (TTT→CTT)	PP_3964 ←	transposase
RA	4,484,724	A→T	5.9%	intergenic (+368/‑101)	PP_3976 → / → PP_3977	isochorismatase family hydrolase/hypothetical protein
RA	4,484,727	A→T	5.9%	intergenic (+371/‑98)	PP_3976 → / → PP_3977	isochorismatase family hydrolase/hypothetical protein
RA	4,496,667	T→A	5.2%	intergenic (+17/+35)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,509,767	T→C	6.0%	I99V (ATC→GTC)	serS ←	serine‑‑tRNA ligase
RA	4,532,812	G→A	7.4%	A182T (GCC→ACC)	PP_4020 →	oxidoreductase
RA	4,538,463	G→A	6.1%	intergenic (+265/‑55)	PP_4025 → / → PP_4027	transposase/hypothetical protein
RA	4,541,840	A→T	5.1%	Q186L (CAA→CTA) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,541,841	A→G	5.1%	Q186Q (CAA→CAG) ‡	nhaB →	Na(+)/H(+) antiporter NhaB
RA	4,561,243	G→C	9.2%	I102M (ATC→ATG)	PP_4048 ←	hypothetical protein
RA	4,574,227	G→C	6.6%	R300P (CGC→CCC) ‡	glgX →	glycogen debranching enzyme
RA	4,574,228	C→G	6.6%	R300R (CGC→CGG) ‡	glgX →	glycogen debranching enzyme
RA	4,574,229	G→C	6.6%	G301R (GGC→CGC)	glgX →	glycogen debranching enzyme
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	72.2%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,632,595	G→C	11.9%	noncoding (35/76 nt)	PP_t59 ←	tRNA‑Gly
RA	4,633,397	A→T	6.3%	F572I (TTC→ATC)	uvrC ←	UvrABC system protein C
RA	4,635,448	G→A	79.5%	T103I (ACC→ATC)	uvrY ←	BarA/UvrY two‑componenent system response regulator
RA	4,654,883	G→T	6.5%	intergenic (+35/‑223)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,654,886	A→C	5.4%	intergenic (+38/‑220)	aceA → / → PP_4118	isocitrate lyase/membrane protein
RA	4,657,108	T→A	5.7%	P167P (CCT→CCA)	nuoB →	NADH‑quinone oxidoreductase subunit B
RA	4,657,303	C→G	10.8%	intergenic (+18/‑62)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,657,309	C→T	9.8%	intergenic (+24/‑56)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,657,310	G→T	9.2%	intergenic (+25/‑55)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,657,311	A→C	9.7%	intergenic (+26/‑54)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,657,312	A→G	9.0%	intergenic (+27/‑53)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,657,318	C→G	6.8%	intergenic (+33/‑47)	nuoB → / → nuoC	NADH‑quinone oxidoreductase subunit B/NADH‑quinone oxidoreductase subunit C/D
RA	4,667,207	C→T	6.7%	L325L (CTG→TTG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,669,731	G→C	5.4%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,733	T→C	5.5%	V22A (GTG→GCG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,734	G→C	5.6%	V22V (GTG→GTC) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,676,457	G→T	5.0%	T706N (ACC→AAC)	ldcC ←	lysine decarboxylase
RA	4,676,463	T→G	5.0%	E704A (GAG→GCG)	ldcC ←	lysine decarboxylase
RA	4,676,467	T→C	5.0%	T703A (ACC→GCC)	ldcC ←	lysine decarboxylase
RA	4,676,470	A→C	6.4%	F702V (TTC→GTC)	ldcC ←	lysine decarboxylase
RA	4,677,258	A→T	7.4%	L439Q (CTG→CAG)	ldcC ←	lysine decarboxylase
RA	4,681,789:1	+C	5.2%	coding (79/1431 nt)	mltD →	membrane‑bound lytic murein transglycosylase D
RA	4,687,693	C→G	7.2%	I223M (ATC→ATG)	PP_4148 →	ABC transporter permease
RA	4,726,619	T→C	7.9%	I255V (ATC→GTC)	brnQ ←	branched‑chain amino acid transporter
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	29.1%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	33.5%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	29.2%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	30.6%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,747,964	C→T	7.7%	intergenic (‑203/‑333)	etfB ← / → PP_4203	electron transfer flavoprotein subunit beta/ubiquinone oxidoreductase electron transfer flavoprotein
RA	4,750,014	T→C	5.4%	intergenic (+35/+37)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,750,017	T→A	5.4%	intergenic (+38/+34)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,750,020	T→A	6.3%	intergenic (+41/+31)	PP_4203 → / ← mqsA	ubiquinone oxidoreductase electron transfer flavoprotein/type II toxin‑antitoxin MqsRA system antitoxin/DNA‑binding transcriptional repressor
RA	4,758,130	C→T	7.2%	P468L (CCG→CTG)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,136	G→C	10.5%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,141	G→C	10.6%	intergenic (+1/+20)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,758,147	A→G	9.8%	intergenic (+7/+14)	ompQ → / ← pvdP	outer membrane pyoverdine efflux protein/pyoverdine biosynthesis‑like protein
RA	4,772,083	A→G	7.5%	V2395A (GTC→GCC)	pvdD ←	non‑ribosomal peptide synthetase
RA	4,779,407	C→A	13.4%	intergenic (‑141/+20)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,408	A→T	12.3%	intergenic (‑142/+19)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,779,409	T→G	15.3%	intergenic (‑143/+18)	pvdD ← / ← pvdJ	non‑ribosomal peptide synthetase/non‑ribosomal peptide synthetase
RA	4,782,594	C→T	9.5%	G1574S (GGC→AGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,782,601	C→G	9.1%	P1571P (CCG→CCC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,782,608	A→G	7.7%	L1569P (CTC→CCC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	20.0%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	21.0%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	21.0%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	20.0%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	19.0%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	18.2%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,824,272	G→C	6.9%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,826,272	C→G	6.2%	V1640L (GTG→CTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,829,766	T→C	5.8%	Q475R (CAG→CGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,836,864	A→G	8.9%	M291V (ATG→GTG)	ccoN‑I →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,839,221	C→G	16.0%	intergenic (+43/‑137)	ccoP‑I → / → PP_4254	cbb3‑type cytochrome c oxidase subunit/hypothetical protein
RA	4,839,224	C→G	16.7%	intergenic (+46/‑134)	ccoP‑I → / → PP_4254	cbb3‑type cytochrome c oxidase subunit/hypothetical protein
RA	4,848,153	T→C	7.1%	L81P (CTG→CCG)	PP_4263 →	cytochrome biogenesis protein
RA	4,848,790	A→G	10.0%	Q30Q (CAA→CAG)	hemN →	oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,848,791	C→T	10.3%	L31L (CTG→TTG)	hemN →	oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,848,797	A→G	9.8%	S33G (AGC→GGC)	hemN →	oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,855,011	A→C	6.1%	N30K (AAT→AAG)	dnaX ←	DNA polymerase III subunit gamma
RA	4,855,020	G→T	7.3%	A27A (GCC→GCA)	dnaX ←	DNA polymerase III subunit gamma
RA	4,855,539	T→G	8.0%	I106M (ATT→ATG)	PP_4270 →	hypothetical protein
RA	4,855,540	C→A	7.8%	H107N (CAT→AAT)	PP_4270 →	hypothetical protein
RA	4,857,061	C→T	6.1%	R36W (CGG→TGG)	PP_5671 →	hypothetical protein
RA	4,874,170	G→A	11.7%	N121N (AAC→AAT) ‡	PP_4283 ←	GntR family transcriptional regulator
RA	4,874,171	T→A	12.0%	N121I (AAC→ATC) ‡	PP_4283 ←	GntR family transcriptional regulator
RA	4,874,172	T→C	12.0%	N121D (AAC→GAC) ‡	PP_4283 ←	GntR family transcriptional regulator
RA	4,884,949	G→C	5.4%	I143M (ATC→ATG)	yedI ←	inner membrane protein
RA	4,900,065	A→G	9.5%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	7.9%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	7.7%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	8.0%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,905,496:1	+C	7.3%	intergenic (‑90/+38)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,499	C→T	7.2%	intergenic (‑93/+35)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,502	A→G	7.0%	intergenic (‑96/+32)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,905,504	Δ1 bp	7.1%	intergenic (‑98/+30)	PP_4313 ← / ← PP_4314	peptidylprolyl isomerase/hypothetical protein
RA	4,928,017	A→G	12.7%	S719P (TCC→CCC)	cheA ←	chemotaxis histidine kinase CheA
RA	4,928,022	C→T	11.3%	G717D (GGC→GAC)	cheA ←	chemotaxis histidine kinase CheA
RA	4,931,090	C→T	9.8%	A94T (GCC→ACC)	cheY ←	two‑component system response regulator
RA	4,936,626	G→C	6.5%	intergenic (‑37/‑381)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,628	G→C	6.9%	intergenic (‑39/‑379)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,630	G→C	6.9%	intergenic (‑41/‑377)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,949,771	G→A	6.3%	V191V (GTC→GTT)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,949,779	T→C	6.5%	N189D (AAC→GAC)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,951,279	T→C	6.7%	I332V (ATC→GTC)	fliK ←	flagellar hook‑length control protein FliK
RA	4,969,993	T→G	10.3%	T84P (ACT→CCT)	fliC ←	flagellin
RA	4,970,004	C→A	8.5%	G80V (GGC→GTC)	fliC ←	flagellin
RA	4,971,954	G→T	7.2%	intergenic (‑389/+28)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,955	C→G	7.3%	intergenic (‑390/+27)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,956	A→C	7.1%	intergenic (‑391/+26)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	5,002,528	A→T	6.2%	I105F (ATT→TTT)	PP_4409 →	site‑specific recombinase
RA	5,015,782	A→G	12.0%	intergenic (‑45/+189)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,787	T→A	10.3%	intergenic (‑50/+184)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,788	C→G	10.3%	intergenic (‑51/+183)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,789	T→A	10.4%	intergenic (‑52/+182)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,015,794	C→T	9.5%	intergenic (‑57/+177)	PP_5679 ← / ← PP_4421	hypothetical protein/aminotransferase
RA	5,020,803	G→T	11.6%	intergenic (+22/+29)	PP_4424 → / ← PP_4425	HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein
RA	5,020,804	G→A	9.6%	intergenic (+23/+28)	PP_4424 → / ← PP_4425	HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein
RA	5,020,805	C→G	9.5%	intergenic (+24/+27)	PP_4424 → / ← PP_4425	HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein
RA	5,020,806	T→C	9.5%	intergenic (+25/+26)	PP_4424 → / ← PP_4425	HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein
RA	5,020,807	A→C	9.4%	intergenic (+26/+25)	PP_4424 → / ← PP_4425	HTH‑type transcriptional regulator/amino acid ABC transporter ATP‑binding protein
RA	5,041,195	C→G	7.5%	intergenic (+173/‑489)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,198	C→T	7.5%	intergenic (+176/‑486)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,200	T→A	7.7%	intergenic (+178/‑484)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,202	A→G	7.8%	intergenic (+180/‑482)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,205	C→G	8.1%	intergenic (+183/‑479)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,050,008	A→T	5.4%	L135* (TTA→TAA) ‡	PP_5686 ←	hypothetical protein
RA	5,050,009	A→T	5.5%	L135I (TTA→ATA) ‡	PP_5686 ←	hypothetical protein
RA	5,055,946	Δ1 bp	6.8%	coding (381/942 nt)	gsiC ←	glutathione ABC transporter permease
RA	5,070,511	G→A	7.5%	R126C (CGC→TGC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,513	A→T	7.6%	L125Q (CTG→CAG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,516	A→T	7.6%	L124Q (CTG→CAG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,518	T→C	7.0%	A123A (GCA→GCG)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,095,932	C→A	5.2%	intergenic (‑41/+48)	hisQ ← / ← argT	histidine/lysine/arginine/ornithine ABC transporter permease/lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,095,939	C→G	5.5%	intergenic (‑48/+41)	hisQ ← / ← argT	histidine/lysine/arginine/ornithine ABC transporter permease/lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,095,945	C→A	5.9%	intergenic (‑54/+35)	hisQ ← / ← argT	histidine/lysine/arginine/ornithine ABC transporter permease/lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,095,946	T→G	5.5%	intergenic (‑55/+34)	hisQ ← / ← argT	histidine/lysine/arginine/ornithine ABC transporter permease/lysine/arginine/ornithine ABC transporter substrate‑binding protein
RA	5,097,141	A→C	7.2%	intergenic (+132/+160)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,144	C→A	5.8%	intergenic (+135/+157)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,145	T→G	6.2%	intergenic (+136/+156)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,148	G→T	6.2%	intergenic (+139/+153)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,222	G→C	16.5%	intergenic (+213/+79)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,225	G→T	16.7%	intergenic (+216/+76)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,231	G→C	14.3%	intergenic (+222/+70)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,232	G→T	14.0%	intergenic (+223/+69)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,234	Δ1 bp	13.8%	intergenic (+225/+67)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,238:1	+G	14.3%	intergenic (+229/+63)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,240	A→C	13.3%	intergenic (+231/+61)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,241	G→C	16.8%	intergenic (+232/+60)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,247	A→C	13.2%	intergenic (+238/+54)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,250	G→C	13.3%	intergenic (+241/+51)	PP_mr66 → / ← acsA‑I	P6/acetyl‑CoA synthetase
RA	5,097,432	T→A	6.4%	M654L (ATG→TTG)	acsA‑I ←	acetyl‑CoA synthetase
RA	5,100,955	C→A	10.0%	M224I (ATG→ATT) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,956	A→T	11.0%	M224K (ATG→AAG) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,100,957	T→G	10.3%	M224L (ATG→CTG) ‡	phhR ←	sigma‑54 dependent transcriptional regulator
RA	5,104,809	C→T	7.0%	I345I (ATC→ATT)	yhhS →	carbohydrate efflux transporter
RA	5,123,458	T→A	5.1%	D225V (GAC→GTC)	PP_4510 ←	hypothetical protein
RA	5,149,436	C→G	7.7%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,437	T→G	8.2%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,440	C→A	9.5%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,441	C→G	8.6%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,444	C→T	8.5%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,160,633	A→G	9.7%	L141P (CTG→CCG)	PP_4543 ←	hypothetical protein
RA	5,160,637	G→C	9.4%	R140G (CGG→GGG)	PP_4543 ←	hypothetical protein
RA	5,160,638	T→A	9.4%	P139P (CCA→CCT) ‡	PP_4543 ←	hypothetical protein
RA	5,160,639	G→C	10.2%	P139R (CCA→CGA) ‡	PP_4543 ←	hypothetical protein
RA	5,160,643	C→T	10.2%	G138S (GGC→AGC)	PP_4543 ←	hypothetical protein
RA	5,166,117	T→C	8.5%	Y588C (TAC→TGC)	hrpA ←	ATP‑dependent helicase HrpA
RA	5,166,123	A→C	8.8%	L586R (CTG→CGG) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,166,124	G→T	8.2%	L586M (CTG→ATG) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,166,130	G→A	8.1%	Q584* (CAG→TAG)	hrpA ←	ATP‑dependent helicase HrpA
RA	5,173,244	T→C	10.6%	intergenic (‑285/+47)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,059	G→T	26.0%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	28.4%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	25.5%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,072	A→C	15.0%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,185,400	C→A	7.5%	A354S (GCC→TCC)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,401	G→T	7.5%	R353R (CGC→CGA)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,404	A→C	7.3%	D352E (GAT→GAG) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,185,405	T→G	7.3%	D352A (GAT→GCT) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,049	Δ1 bp	6.6%	coding (411/1716 nt)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,053	T→G	6.5%	E136A (GAG→GCG) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,054	C→A	6.8%	E136* (GAG→TAG) ‡	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,186,057:1	+C	6.8%	coding (403/1716 nt)	aceK ←	isocitrate dehydrogenase kinase/phosphatase
RA	5,194,887	T→G	10.4%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	9.0%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,209,838	Δ1 bp	5.3%	coding (297/1134 nt)	rnd ←	ribonuclease D
RA	5,228,875	Δ1 bp	6.9%	coding (184/2391 nt)	PP_4606 ←	ferric siderophore receptor
RA	5,232,054	C→G	9.1%	A214A (GCG→GCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,232,057	C→G	9.1%	P213P (CCG→CCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,241,709	A→G	7.6%	L55L (TTG→CTG)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,714:1	+C	7.1%	coding (158/633 nt)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,719	Δ1 bp	7.7%	coding (153/633 nt)	hmgC ←	maleylacetoacetate isomerase
RA	5,241,725	C→T	7.5%	Q49Q (CAG→CAA)	hmgC ←	maleylacetoacetate isomerase
RA	5,244,820	G→A	7.5%	G76E (GGG→GAG)	hmgR →	Hmg transcriptional repressor
RA	5,250,457	C→T	6.9%	A76A (GCG→GCA)	cidB ←	holin CidA anti‑holin regulator
RA	5,267,497	T→A	5.4%	L28Q (CTG→CAG)	PP_4643 →	xanthine/uracil permease family protein
RA	5,267,501	Δ1 bp	5.4%	coding (87/1518 nt)	PP_4643 →	xanthine/uracil permease family protein
RA	5,273,066	C→T	7.5%	S71S (AGC→AGT)	rlmG →	ribosomal RNA large subunit methyltransferase G
RA	5,278,282	T→C	9.3%	intergenic (+22/‑208)	PP_4652 → / → purP	membrane protein/adenine:H+ symporter
RA	5,307,405	C→T	7.7%	intergenic (‑154/+32)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,411	T→C	7.8%	intergenic (‑160/+26)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,412	G→A	7.8%	intergenic (‑161/+25)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,307,418	A→G	7.8%	intergenic (‑167/+19)	recC ← / ← PP_5SG	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA
RA	5,313,276	C→G	9.7%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	7.8%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,318,444	G→C	6.6%	I310M (ATC→ATG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,451	G→C	8.2%	A308G (GCG→GGG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,453	C→G	8.2%	P307P (CCG→CCC) ‡	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,318,455	G→C	9.3%	P307A (CCG→GCG) ‡	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,329,396	T→A	7.9%	L10Q (CTG→CAG)	PP_4690 →	Rieske 2Fe‑2S family protein
RA	5,344,242	G→A	10.3%	E494E (GAG→GAA)	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,246	A→C	10.9%	K496Q (AAG→CAG) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,247	A→T	10.3%	K496M (AAG→ATG) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,248	G→T	10.9%	K496N (AAG→AAT) ‡	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,344,252	T→C	10.9%	F498L (TTC→CTC)	pgi‑II →	glucose 6‑phosphate isomerase
RA	5,346,570	C→T	8.7%	intergenic (+33/‑9)	acsA‑II → / → PP_4703	acetyl‑CoA synthetase/hypothetical protein
RA	5,349,275	C→T	8.0%	I583I (ATC→ATT)	PP_4704 →	hypothetical protein
RA	5,351,977	G→T	7.1%	intergenic (‑230/+34)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,351,980	A→C	7.0%	intergenic (‑233/+31)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,358,231	G→A	6.2%	A177V (GCC→GTC)	infB ←	translation initiation factor IF‑2
RA	5,363,680	C→G	5.5%	G29A (GGC→GCC)	glmM ←	phosphoglucosamine mutase
RA	5,367,783	A→T	7.3%	K102M (AAG→ATG)	PP_4720 →	RNA‑binding protein
RA	5,377,206	A→T	100%	L120Q (CTG→CAG)	dnaK ←	chaperone protein DnaK
RA	5,378,260	A→T	6.8%	intergenic (‑37/‑156)	grpE ← / → recN	heat shock protein GrpE/DNA repair/recombination protein
RA	5,380,162	C→T	7.0%	intergenic (+73/+35)	recN → / ← fur	DNA repair/recombination protein/ferric iron uptake global transcriptional repressor Fur
RA	5,383,303	G→T	6.9%	intergenic (‑23/‑234)	pdhR ← / → lldP	DNA‑binding transcriptional regulator LldR/L‑lactate permease
RA	5,383,305	C→A	7.0%	intergenic (‑25/‑232)	pdhR ← / → lldP	DNA‑binding transcriptional regulator LldR/L‑lactate permease
RA	5,383,308	A→T	6.9%	intergenic (‑28/‑229)	pdhR ← / → lldP	DNA‑binding transcriptional regulator LldR/L‑lactate permease
RA	5,383,311	T→G	6.7%	intergenic (‑31/‑226)	pdhR ← / → lldP	DNA‑binding transcriptional regulator LldR/L‑lactate permease
RA	5,383,313	A→C	6.6%	intergenic (‑33/‑224)	pdhR ← / → lldP	DNA‑binding transcriptional regulator LldR/L‑lactate permease
RA	5,388,876	C→A	9.9%	L796M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,877	T→G	11.1%	L796R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,882	C→A	9.8%	L798M (CTG→ATG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,388,883	T→G	9.8%	L798R (CTG→CGG) ‡	dld2 →	D‑lactate dehydrogenase
RA	5,391,824	G→T	7.9%	L24L (CTC→CTA) ‡	PP_5709 ←	hypothetical protein
RA	5,391,825	A→C	6.5%	L24R (CTC→CGC) ‡	PP_5709 ←	hypothetical protein
RA	5,397,657	A→T	5.9%	L223F (TTA→TTT)	hsdS →	type I restriction modification system specificity protein
RA	5,406,053	C→G	5.3%	A185A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,406,056	C→G	5.3%	A184A (GCG→GCC)	PP_4750 ←	amino acid ABC transporter permease
RA	5,407,052	A→C	7.4%	L122R (CTG→CGG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,408,518	C→T	7.1%	A74T (GCC→ACC)	PP_4752 ←	Xaa‑Pro aminopeptidase
RA	5,430,392	A→G	11.7%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,396	A→G	11.8%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,397:1	+A	12.8%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,404	Δ1 bp	11.5%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,406	C→T	12.2%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,410	C→T	12.0%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,452,637	G→A	7.4%	A390T (GCC→ACC)	lnt →	apolipoprotein N‑acyltransferase
RA	5,462,393	T→G	8.7%	intergenic (+16/+18)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,394	G→C	8.7%	intergenic (+17/+17)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,462,395	C→A	8.6%	intergenic (+18/+16)	PP_4798 → / ← PP_4799	membrane‑bound lytic murein transglycosylase/muramoyltetrapeptide carboxypeptidase
RA	5,469,260	A→G	6.8%	F246F (TTT→TTC)	mrdB ←	murein transpeptidase factor
RA	5,485,150	A→G	24.1%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,153	A→G	25.8%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	30.9%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	29.6%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	33.3%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,167	G→A	27.3%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,168	C→T	27.3%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,171	C→T	27.3%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,499,756	G→A	10.5%	A178A (GCG→GCA)	cobK →	precorrin‑6x reductase
RA	5,516,304	A→G	7.4%	I39V (ATC→GTC) ‡	PP_4849 →	molecular chaperone DnaK
RA	5,516,306	C→G	7.0%	I39M (ATC→ATG) ‡	PP_4849 →	molecular chaperone DnaK
RA	5,516,308	C→T	7.3%	T40I (ACC→ATC)	PP_4849 →	molecular chaperone DnaK
RA	5,518,734	T→A	7.9%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	7.6%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	9.5%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,521,291	C→T	8.5%	W165* (TGG→TGA)	lip ←	lipase
RA	5,521,817	C→T	9.1%	intergenic (‑32/‑35)	lip ← / → PP_4855	lipase/osmotically‑inducible lipoprotein OsmE
RA	5,521,819	A→G	9.2%	intergenic (‑34/‑33)	lip ← / → PP_4855	lipase/osmotically‑inducible lipoprotein OsmE
RA	5,530,633	G→C	6.1%	G112G (GGC→GGG) ‡	braF ←	ABC transporter ATP‑binding protein
RA	5,530,635	C→T	6.0%	G112S (GGC→AGC) ‡	braF ←	ABC transporter ATP‑binding protein
RA	5,532,228	C→A	9.8%	K15N (AAG→AAT) ‡	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,532,229	T→A	9.5%	K15M (AAG→ATG) ‡	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,532,230	T→G	9.6%	K15Q (AAG→CAG) ‡	braE ←	high‑affinity branched‑chain amino acid ABC transporter permease BraE
RA	5,538,381	A→G	6.3%	E153E (GAA→GAG)	PP_4871 →	lysine decarboxylase family protein
RA	5,539,279	C→G	6.6%	K569N (AAG→AAC)	PP_4872 ←	hypothetical protein
RA	5,541,711	T→G	7.7%	I330L (ATC→CTC)	dnaB ←	replicative DNA helicase
RA	5,541,720	T→A	7.5%	I327F (ATC→TTC)	dnaB ←	replicative DNA helicase
RA	5,541,721	T→A	7.3%	E326D (GAA→GAT)	dnaB ←	replicative DNA helicase
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,570,914	T→G	6.4%	C201G (TGC→GGC)	queG →	epoxyqueuosine reductase
RA	5,574,182	A→T	5.3%	intergenic (+234/+71)	rsgA → / ← motB	ribosome biogenesis GTPase RsgA/flagellar motor rotation protein
RA	5,586,523	T→C	7.1%	T255A (ACC→GCC)	PP_4914 ←	phytase‑like protein
RA	5,586,526	A→G	7.1%	F254L (TTT→CTT)	PP_4914 ←	phytase‑like protein
RA	5,586,528	A→T	6.6%	L253Q (CTG→CAG)	PP_4914 ←	phytase‑like protein
RA	5,586,530	C→T	7.1%	K252K (AAG→AAA)	PP_4914 ←	phytase‑like protein
RA	5,586,533	G→A	7.4%	G251G (GGC→GGT)	PP_4914 ←	phytase‑like protein
RA	5,591,504	C→T	5.7%	P126P (CCG→CCA)	nudF ←	ADP‑ribose/sugar pyrophosphatase
RA	5,592,890	G→A	7.4%	A388A (GCC→GCT)	PP_4921 ←	NCS1 family transporter
RA	5,603,056	C→T	87.3%	W142* (TGG→TGA)	PP_4924 ←	subtilase family serine protease
RA	5,611,236	G→A	6.9%	R77H (CGC→CAC)	PP_4931 →	hypothetical protein
RA	5,614,048	A→G	8.8%	intergenic (+30/+52)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,055	A→T	9.0%	intergenic (+37/+45)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,056	A→T	9.0%	intergenic (+38/+44)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,614,063	C→T	11.1%	intergenic (+45/+37)	PP_4933 → / ← hldE	hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase
RA	5,631,116	A→T	10.1%	K216* (AAG→TAG)	putA →	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
RA	5,648,209	G→C	9.4%	intergenic (+16/+8)	elaA → / ← PP_4957	acetyltransferase/hypothetical protein
RA	5,650,790	G→C	7.1%	Q135E (CAG→GAG)	PP_4959 ←	diguanylate cyclase
RA	5,650,792	T→A	6.3%	D134V (GAC→GTC)	PP_4959 ←	diguanylate cyclase
RA	5,650,794	G→C	7.1%	L133L (CTC→CTG)	PP_4959 ←	diguanylate cyclase
RA	5,651,210	T→C	6.2%	intergenic (‑18/+195)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,374	T→G	6.4%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	6.1%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	15.4%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	15.4%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	17.2%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	17.2%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,657,893	C→A	9.4%	intergenic (‑199/‑53)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,894	T→G	11.7%	intergenic (‑200/‑52)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,667,258	G→T	5.9%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	5.9%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,269	G→T	6.1%	intergenic (+47/+24)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,270	A→G	6.0%	intergenic (+48/+23)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,669,964	C→G	8.2%	H147Q (CAC→CAG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,669,965	C→G	8.2%	L148V (CTG→GTG)	metF →	5,10‑methylenetetrahydrofolate reductase
RA	5,670,453	G→A	6.2%	intergenic (+42/‑43)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,457	A→T	6.3%	intergenic (+46/‑39)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,458	T→A	6.3%	intergenic (+47/‑38)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,459	A→T	6.4%	intergenic (+48/‑37)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,463	T→C	6.5%	intergenic (+52/‑33)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,473	T→A	7.0%	intergenic (+62/‑23)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,680,914	C→T	7.7%	E123E (GAG→GAA) ‡	PP_4986 ←	hemolysin III family channel protein
RA	5,680,915	T→C	7.8%	E123G (GAG→GGG) ‡	PP_4986 ←	hemolysin III family channel protein
RA	5,680,918	G→A	7.9%	S122F (TCC→TTC) ‡	PP_4986 ←	hemolysin III family channel protein
RA	5,680,919	A→G	7.9%	S122P (TCC→CCC) ‡	PP_4986 ←	hemolysin III family channel protein
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,697,314	C→A	7.9%	intergenic (+24/‑53)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,316	G→C	8.6%	intergenic (+26/‑51)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,697,318	T→G	8.6%	intergenic (+28/‑49)	hslV → / → hslU	ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit
RA	5,699,749	A→G	6.5%	D76G (GAC→GGC)	phaA →	poly(3‑hydroxyalkanoate) polymerase
RA	5,703,671	C→T	6.2%	S502S (AGC→AGT)	phaC‑II →	poly(3‑hydroxyalkanoate) polymerase
RA	5,706,587	T→A	9.8%	L202Q (CTG→CAG)	PP_5009 →	hypothetical protein
RA	5,709,378	G→C	5.6%	R1132R (CGG→CGC)	PP_5009 →	hypothetical protein
RA	5,713,471	A→C	7.0%	Y307S (TAC→TCC) ‡	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,713,472	C→G	7.0%	Y307* (TAC→TAG) ‡	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,713,475	T→G	6.9%	I308M (ATT→ATG)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,713,478	C→A	6.7%	A309A (GCC→GCA)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,713,481	C→G	6.6%	I310M (ATC→ATG)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,713,482	G→T	6.4%	D311Y (GAC→TAC)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,728,840	A→G	7.1%	intergenic (‑203/+121)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,843	A→T	5.9%	intergenic (‑206/+118)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,728,844	A→T	5.9%	intergenic (‑207/+117)	opgG ← / ← dtd	glucans biosynthesis protein G/D‑tyrosyl‑tRNA(Tyr) deacylase
RA	5,731,969	A→T	7.4%	L196* (TTG→TAG) ‡	hutI ←	imidazolonepropionase
RA	5,731,970	A→T	8.7%	L196M (TTG→ATG) ‡	hutI ←	imidazolonepropionase
RA	5,740,467	T→G	14.6%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,748,120	C→T	5.4%	intergenic (‑147/+39)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,122	T→G	6.3%	intergenic (‑149/+37)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,123	T→A	5.4%	intergenic (‑150/+36)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,124	T→A	5.4%	intergenic (‑151/+35)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,125	C→A	5.5%	intergenic (‑152/+34)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,127	A→G	5.4%	intergenic (‑154/+32)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,750,398	C→T	7.6%	V389M (GTG→ATG)	thiI ←	tRNA sulfurtransferase
RA	5,750,399	A→G	7.6%	H388H (CAT→CAC)	thiI ←	tRNA sulfurtransferase
RA	5,763,633	G→C	7.5%	A337P (GCC→CCC)	PP_5057 →	M23/M37 family peptidase
RA	5,763,637	A→C	7.4%	K338T (AAG→ACG) ‡	PP_5057 →	M23/M37 family peptidase
RA	5,763,638	G→T	8.5%	K338N (AAG→AAT) ‡	PP_5057 →	M23/M37 family peptidase
RA	5,763,642	G→C	7.3%	D340H (GAC→CAC)	PP_5057 →	M23/M37 family peptidase
RA	5,782,835	G→C	6.5%	S437T (AGC→ACC)	kefA →	intermediate mechanosensitive channel protein
RA	5,787,642	T→C	8.2%	T51A (ACC→GCC)	PP_5070 ←	ParA family protein
RA	5,787,644	A→T	6.9%	L50Q (CTG→CAG)	PP_5070 ←	ParA family protein
RA	5,787,651	T→C	8.0%	T48A (ACC→GCC)	PP_5070 ←	ParA family protein
RA	5,791,864	C→A	7.7%	intergenic (‑147/+48)	hemE ← / ← gltD	uroporphyrinogen decarboxylase/glutamate synthase subunit beta
RA	5,796,670	G→A	8.8%	L410L (CTC→CTT)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,798,502	G→A	7.0%	T454I (ACC→ATC)	PP_5077 ←	hypothetical protein
RA	5,802,323	C→G	12.5%	V171L (GTG→CTG)	pilQ ←	type IV pili biogenesis protein
RA	5,802,325	A→T	12.5%	L170Q (CTG→CAG)	pilQ ←	type IV pili biogenesis protein
RA	5,802,327	C→G	11.9%	Q169H (CAG→CAC)	pilQ ←	type IV pili biogenesis protein
RA	5,825,222	G→T	6.4%	A84D (GCT→GAT) ‡	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,223	C→G	6.1%	A84P (GCT→CCT) ‡	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,231	T→C	6.6%	E81G (GAA→GGA)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,825,234	A→T	7.1%	L80Q (CTG→CAG)	trmB ←	tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,837,490	C→T	5.5%	A97A (GCC→GCT)	PP_5116 →	hypothetical protein
RA	5,837,495	A→C	5.4%	Q99P (CAG→CCG) ‡	PP_5116 →	hypothetical protein
RA	5,837,496	G→T	6.0%	Q99H (CAG→CAT) ‡	PP_5116 →	hypothetical protein
RA	5,838,213	G→A	6.8%	V338V (GTG→GTA)	PP_5116 →	hypothetical protein
RA	5,845,218	T→G	9.2%	P43P (CCT→CCG)	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,226	C→A	9.6%	P46H (CCC→CAC) ‡	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,227	C→G	9.6%	P46P (CCC→CCG) ‡	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,228	C→G	9.6%	L47V (CTG→GTG) ‡	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,229	T→G	8.6%	L47R (CTG→CGG) ‡	coaD →	phosphopantetheine adenylyltransferase
RA	5,845,237	C→A	10.4%	R50R (CGG→AGG)	coaD →	phosphopantetheine adenylyltransferase
RA	5,868,469	C→T	6.9%	G32D (GGT→GAT)	lgt ←	prolipoprotein diacylglyceryl transferase
RA	5,868,472	C→G	7.3%	G31A (GGC→GCC)	lgt ←	prolipoprotein diacylglyceryl transferase
RA	5,868,475	A→G	7.3%	I30T (ATC→ACC)	lgt ←	prolipoprotein diacylglyceryl transferase
RA	5,884,980	T→G	6.2%	A53A (GCA→GCC) ‡	PP_5159 ←	hypothetical protein
RA	5,884,981	G→C	5.4%	A53G (GCA→GGA) ‡	PP_5159 ←	hypothetical protein
RA	5,887,744	C→T	7.2%	A172A (GCG→GCA)	maa ←	acetyltransferase
RA	5,893,031	G→C	6.8%	A80G (GCA→GGA)	PP_5167 ←	hypothetical protein
RA	5,897,770	A→G	13.6%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,773	G→A	12.7%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,778	C→G	14.6%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,779	G→C	11.7%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,782	G→C	12.3%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,783	C→G	16.8%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,788	T→C	11.3%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,791	C→T	15.2%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,939	G→C	9.3%	Y983* (TAC→TAG)	PP_5173 ←	RND family transporter
RA	5,897,942	G→C	9.6%	A982A (GCC→GCG)	PP_5173 ←	RND family transporter
RA	5,899,957	C→G	7.7%	V311L (GTG→CTG)	PP_5173 ←	RND family transporter
RA	5,899,958	C→G	7.7%	Q310H (CAG→CAC)	PP_5173 ←	RND family transporter
RA	5,903,165	A→C	12.6%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,890	C→T	6.8%	P285P (CCG→CCA)	spuH ←	spermidine/putrescine ABC transporter permease
RA	5,907,906:1	+G	6.9%	coding (61/1095 nt)	spuE ←	spermidine/putrescine ABC transporter substrate‑binding protein
RA	5,907,912	Δ1 bp	6.8%	coding (55/1095 nt)	spuE ←	spermidine/putrescine ABC transporter substrate‑binding protein
RA	5,933,122	G→T	6.4%	A93A (GCC→GCA)	pepP ←	proline aminopeptidase P II
RA	5,933,125	C→G	6.5%	R92R (CGG→CGC)	pepP ←	proline aminopeptidase P II
RA	5,933,845	A→G	7.0%	D44D (GAT→GAC)	PP_5201 ←	hypothetical protein
RA	5,944,536	A→T	5.4%	intergenic (‑302/+38)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,944,537	A→G	5.4%	intergenic (‑303/+37)	PP_5211 ← / ← PP_5212	ChaC‑related protein/iron‑sulfur‑binding oxidoreductase
RA	5,947,762	G→A	9.8%	R238C (CGC→TGC)	rho ←	transcription termination factor Rho
RA	5,948,139	G→A	50.0%	A112V (GCC→GTC)	rho ←	transcription termination factor Rho
RA	5,959,826	T→C	5.9%	D36G (GAC→GGC)	rnk ←	nucleotide diphosphokinase regulator
RA	5,959,835	G→A	6.8%	A33V (GCC→GTC)	rnk ←	nucleotide diphosphokinase regulator
RA	5,963,846	T→G	8.0%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,851	C→A	8.0%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,966,322	A→C	5.1%	intergenic (‑391/+39)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,323	A→T	5.0%	intergenic (‑392/+38)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,332	A→T	7.4%	intergenic (‑401/+29)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,333	A→T	7.4%	intergenic (‑402/+28)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,979,975	T→A	7.2%	L207* (TTA→TAA)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,986,841	T→A	100%	intergenic (+121/‑78)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	25.4%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	21.4%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	21.4%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	21.4%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	21.4%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	20.0%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	20.7%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	22.8%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	21.7%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	25.9%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	27.1%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	26.0%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	28.5%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	27.6%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	27.6%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	30.0%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	32.8%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,999,561	T→G	8.5%	H32Q (CAT→CAG)	PP_5256 →	cyclic nucleotide‑binding protein
RA	5,999,564	C→A	8.7%	A33A (GCC→GCA)	PP_5256 →	cyclic nucleotide‑binding protein
RA	6,004,973	G→C	6.2%	intergenic (+11/‑165)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,987	T→G	5.9%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,994	G→C	5.6%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	7.0%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,007	C→A	6.2%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,241	C→T	7.5%	E538K (GAA→AAA)	PP_5263 ←	GGDEF domain‑containing protein
RA	6,011,489	T→G	9.3%	I114S (ATC→AGC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,493	G→C	10.9%	K115N (AAG→AAC)	rep →	single‑stranded DNA dependent ATPase
RA	6,011,496	G→C	10.6%	A116A (GCG→GCC)	rep →	single‑stranded DNA dependent ATPase
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,019,064	G→C	6.8%	L46V (CTG→GTG)	dadX ←	alanine racemase
RA	6,019,070	A→C	7.0%	C44G (TGC→GGC)	dadX ←	alanine racemase
RA	6,019,072	C→T	6.9%	R43H (CGC→CAC)	dadX ←	alanine racemase
RA	6,019,075	A→G	6.9%	V42A (GTG→GCG)	dadX ←	alanine racemase
RA	6,019,077	G→T	6.6%	A41A (GCC→GCA)	dadX ←	alanine racemase
RA	6,019,083	G→C	7.1%	H39Q (CAC→CAG)	dadX ←	alanine racemase
RA	6,021,700	T→G	10.1%	intergenic (‑51/‑93)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,021,701	C→A	11.5%	intergenic (‑52/‑92)	PP_5272 ← / → PP_5273	hypothetical protein/oxidoreductase
RA	6,025,587	G→A	7.1%	T153T (ACG→ACA)	PP_5276 →	phospholipase D family protein
RA	6,031,831	A→T	7.0%	K229* (AAG→TAG) ‡	dppA‑IV →	dipeptide transport protein
RA	6,031,832	A→T	8.2%	K229M (AAG→ATG) ‡	dppA‑IV →	dipeptide transport protein
RA	6,037,111	T→A	7.0%	G73G (GGT→GGA)	argB →	acetylglutamate kinase
RA	6,046,171	C→G	8.2%	E443Q (GAG→CAG)	puuA‑II ←	glutamate‑putrescine ligase
RA	6,046,173	G→C	8.2%	A442G (GCC→GGC)	puuA‑II ←	glutamate‑putrescine ligase
RA	6,046,175	C→G	8.0%	L441L (CTG→CTC)	puuA‑II ←	glutamate‑putrescine ligase
RA	6,054,755	A→C	10.0%	I45L (ATC→CTC) ‡	exbD →	TonB‑gated outer membrane transporter gating inner membrane protein
RA	6,054,757	C→T	9.9%	I45I (ATC→ATT) ‡	exbD →	TonB‑gated outer membrane transporter gating inner membrane protein
RA	6,054,758	A→G	9.7%	K46E (AAG→GAG) ‡	exbD →	TonB‑gated outer membrane transporter gating inner membrane protein
RA	6,054,760	G→T	10.1%	K46N (AAG→AAT) ‡	exbD →	TonB‑gated outer membrane transporter gating inner membrane protein
RA	6,060,463	G→A	6.7%	intergenic (+99/+82)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,485	T→G	6.8%	intergenic (+121/+60)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,489	T→C	5.9%	intergenic (+125/+56)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,101,842	G→A	9.2%	E332K (GAA→AAA) ‡	uvrD →	DNA‑dependent ATPase I/helicase II
RA	6,101,843	A→T	10.6%	E332V (GAA→GTA) ‡	uvrD →	DNA‑dependent ATPase I/helicase II
RA	6,112,863	C→T	7.2%	intergenic (‑119/‑8)	PP_5363 ← / → clsA	hypothetical protein/cardiolipin synthase
RA	6,114,347	C→A	5.1%	intergenic (+31/+53)	clsA → / ← PP_5365	cardiolipin synthase/fatty acid methyltransferase
RA	6,114,351:1	+G	5.2%	intergenic (+35/+49)	clsA → / ← PP_5365	cardiolipin synthase/fatty acid methyltransferase
RA	6,132,135	C→G	7.2%	G573A (GGC→GCC)	copA‑II ←	copper resistance protein A
RA	6,166,470	G→T	5.5%	intergenic (‑229/‑451)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,471	T→G	5.5%	intergenic (‑230/‑450)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,166,475	A→C	5.5%	intergenic (‑234/‑446)	PP_5406 ← / → PP_5407	transposase/TnsD‑like transposition protein
RA	6,173,516	T→A	7.9%	I375F (ATC→TTC)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,519	T→C	8.0%	N374D (AAT→GAT)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,532	G→A	7.5%	I369I (ATC→ATT)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase
RA	6,173,535	T→A	7.5%	E368D (GAA→GAT)	glmU ←	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	2837038	2837201	164	24 [20]	[22] 23	[sad‑I]	[sad‑I]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 13986	56 (0.950)	7 (0.130)	6/240	NT	12.5%	coding (657/2421 nt)	gyrB	DNA gyrase subunit B
	?	NC_002947	= 14012	46 (0.840)					coding (683/2421 nt)	gyrB	DNA gyrase subunit B
*	?	NC_002947	38445 =	69 (1.170)	4 (0.070)	4/246	NT	6.1%	coding (185/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
	?	NC_002947	38482 =	58 (1.030)					coding (148/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
*	?	NC_002947	47623 =	59 (1.000)	4 (0.070)	4/244	NT	6.7%	coding (1752/3162 nt)	czcA‑I	cation efflux system protein
	?	NC_002947	47677 =	55 (0.990)					coding (1698/3162 nt)	czcA‑I	cation efflux system protein
*	?	NC_002947	= 50337	60 (1.020)	4 (0.070)	4/244	NT	6.0%	coding (313/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
	?	NC_002947	= 50367	68 (1.220)					coding (283/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
*	?	NC_002947	= 70234	51 (0.870)	4 (0.070)	4/242	NT	7.2%	coding (1671/2055 nt)	glyS	glycine‑tRNA ligase subunit beta
	?	NC_002947	= 70267	55 (1.000)					coding (1638/2055 nt)	glyS	glycine‑tRNA ligase subunit beta
*	?	NC_002947	104207 =	63 (1.070)	4 (0.070)	4/248	NT	6.1%	coding (366/1059 nt)	PP_0099	hypothetical protein
	?	NC_002947	104260 =	62 (1.100)					coding (419/1059 nt)	PP_0099	hypothetical protein
*	?	NC_002947	= 106235	67 (1.140)	6 (0.110)	6/240	NT	8.7%	coding (102/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 106261	63 (1.150)					coding (128/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	131590 =	67 (1.140)	5 (0.090)	4/250	NT	7.6%	coding (116/303 nt)	PP_0125	cytochrome c‑type protein
	?	NC_002947	131622 =	57 (1.000)					coding (148/303 nt)	PP_0125	cytochrome c‑type protein
*	?	NC_002947	= 134530	56 (0.950)	3 (0.050)	3/250	NT	5.5%	coding (426/1938 nt)	PP_0129	GGDEF domain‑containing protein
	?	NC_002947	= 134587	48 (0.840)					coding (483/1938 nt)	PP_0129	GGDEF domain‑containing protein
*	?	NC_002947	= 142705	64 (1.090)	3 (0.050)	3/244	NT	5.3%	coding (649/822 nt)	PP_0134	hypothetical protein
	?	NC_002947	= 142750	47 (0.840)					coding (694/822 nt)	PP_0134	hypothetical protein
*	?	NC_002947	153084 =	77 (1.310)	6 (0.110)	6/246	NT	7.6%	coding (523/1407 nt)	PP_0144	insulinase family metalloprotease
	?	NC_002947	153149 =	72 (1.280)					coding (458/1407 nt)	PP_0144	insulinase family metalloprotease
*	?	NC_002947	= 170173	51 (0.870)	4 (0.070)	4/240	NT	8.0%	coding (575/1221 nt)	PP_0159	family III CoA‑transferase
	?	NC_002947	= 170205	44 (0.800)					coding (607/1221 nt)	PP_0159	family III CoA‑transferase
*	?	NC_002947	230329 =	49 (0.830)	3 (0.050)	3/244	NT	6.2%	coding (862/876 nt)	PP_0178	efflux pump
	?	NC_002947	230365 =	44 (0.790)					coding (26/1419 nt)	PP_0179	putative efflux transporter
*	?	NC_002947	= 260854	77 (1.310)	4 (0.070)	4/244	NT	5.1%	coding (184/852 nt)	tauB‑I	taurine ABC transporter ATP‑binding protein
	?	NC_002947	= 260891	77 (1.380)					coding (221/852 nt)	tauB‑I	taurine ABC transporter ATP‑binding protein
*	?	NC_002947	295175 =	68 (1.160)	4 (0.070)	4/248	NT	5.9%	coding (579/813 nt)	ssuB	aliphatic sulfonates ABC transporter ATP‑binding protein SsuB
	?	NC_002947	295216 =	63 (1.110)					coding (620/813 nt)	ssuB	aliphatic sulfonates ABC transporter ATP‑binding protein SsuB
*	?	NC_002947	310472 =	65 (1.100)	6 (0.110)	5/242	NT	9.0%	coding (1904/2346 nt)	PP_0256	putative oxidoreductase
	?	NC_002947	310512 =	61 (1.110)					coding (1864/2346 nt)	PP_0256	putative oxidoreductase
*	?	NC_002947	= 329807	49 (0.830)	4 (0.070)	4/242	NT	7.8%	coding (164/720 nt)	gltR‑I	two‑component system response regulator
	?	NC_002947	= 329871	49 (0.890)					coding (100/720 nt)	gltR‑I	two‑component system response regulator
*	?	NC_002947	= 379775	63 (1.070)	5 (0.090)	5/246	NT	8.1%	coding (72/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 379807	53 (0.940)					coding (104/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
*	?	NC_002947	= 400371	25 (0.420)	4 (0.070)	4/250	NT	9.8%	intergenic (+106/‑44)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 3967872	49 (0.860)					intergenic (+64/‑1)	ydcP/PP_3498	peptidase/transposase
*	?	NC_002947	= 422593	58 (0.990)	3 (0.050)	3/242	NT	5.2%	coding (1355/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	= 422635	55 (1.000)					coding (1313/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	= 469838	47 (0.800)	4 (0.070)	4/248	NT	7.0%	coding (1119/3744 nt)	PP_0386	sensory box protein
	?	NC_002947	= 469877	61 (1.080)					coding (1080/3744 nt)	PP_0386	sensory box protein
*	?	NC_002947	485102 =	81 (1.380)	4 (0.070)	4/248	NT	5.2%	coding (833/867 nt)	apaH	bis(5'‑nucleosyl)‑tetraphosphatase
	?	NC_002947	485197 =	68 (1.200)					coding (738/867 nt)	apaH	bis(5'‑nucleosyl)‑tetraphosphatase
*	?	NC_002947	= 499202	14 (0.240)	9 (0.160)	9/240	NT	32.7%	intergenic (+46/‑250)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 499271	24 (0.440)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	522020 =	56 (0.950)	4 (0.070)	4/246	NT	6.4%	coding (707/1428 nt)	PP_0435	M23/M37 family peptidase
	?	NC_002947	522075 =	63 (1.120)					coding (652/1428 nt)	PP_0435	M23/M37 family peptidase
*	?	NC_002947	= 570780	52 (0.880)	4 (0.070)	4/250	NT	7.7%	coding (1156/1395 nt)	yajR	transporter
	?	NC_002947	= 570808	46 (0.810)					coding (1184/1395 nt)	yajR	transporter
*	?	NC_002947	599803 =	39 (0.660)	3 (0.060)	3/238	NT	8.6%	coding (241/408 nt)	PP_0512	hypothetical protein
	?	NC_002947	599853 =	28 (0.520)					coding (191/408 nt)	PP_0512	hypothetical protein
*	?	NC_002947	611927 =	NA (NA)	5 (0.090)	5/240	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	611984 =	NA (NA)	5 (0.090)	4/250	NT	NA	coding (881/966 nt)	PP_0526	transposase
	?	NC_002947	612065 =	NA (NA)					coding (962/966 nt)	PP_0526	transposase
*	?	NC_002947	630038 =	54 (0.920)	3 (0.050)	3/244	NT	6.1%	coding (160/1395 nt)	eutB	ethanolamine ammonia‑lyase subunit alpha
	?	NC_002947	630134 =	42 (0.750)					coding (64/1395 nt)	eutB	ethanolamine ammonia‑lyase subunit alpha
*	?	NC_002947	= 642453	58 (0.990)	6 (0.110)	5/246	NT	10.6%	coding (534/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
	?	NC_002947	= 642496	46 (0.820)					coding (491/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
*	?	NC_002947	645850 =	49 (0.830)	4 (0.070)	4/246	NT	8.4%	coding (245/1056 nt)	PP_0556	acetoin catabolism protein
	?	NC_002947	645889 =	41 (0.730)					coding (206/1056 nt)	PP_0556	acetoin catabolism protein
*	?	NC_002947	= 683425	69 (1.170)	5 (0.090)	5/248	NT	6.7%	intergenic (‑153/+15)	PP_0584/PP_0585	methyl‑accepting chemotaxis transducer/MerR family metal‑sensitive transcriptional regulator
	?	NC_002947	= 683467	72 (1.270)					coding (384/411 nt)	PP_0585	MerR family metal‑sensitive transcriptional regulator
*	?	NC_002947	716611 =	56 (0.950)	3 (0.050)	3/250	NT	5.6%	coding (189/465 nt)	PP_0610	hypothetical protein
	?	NC_002947	716644 =	46 (0.810)					coding (222/465 nt)	PP_0610	hypothetical protein
*	?	NC_002947	= 719133	59 (1.000)	6 (0.110)	5/244	NT	9.3%	coding (784/1410 nt)	PP_0613	amidase family protein
	?	NC_002947	= 719213	61 (1.100)					coding (704/1410 nt)	PP_0613	amidase family protein
*	?	NC_002947	737967 =	52 (0.880)	4 (0.070)	4/254	NT	6.6%	coding (583/624 nt)	coaE	dephospho‑CoA kinase
	?	NC_002947	738017 =	62 (1.070)					coding (533/624 nt)	coaE	dephospho‑CoA kinase
*	?	NC_002947	= 738808	30 (0.510)	4 (0.070)	3/248	NT	9.5%	coding (608/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	= 738852	47 (0.830)					coding (564/867 nt)	pilD	leader peptidase/N‑methyltransferase
*	?	NC_002947	= 741869	NA (NA)	3 (0.050)	3/246	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 742589	NA (NA)	4 (0.070)	3/250	NT	NA	coding (690/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	= 742666	NA (NA)					coding (767/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 775280	65 (1.100)	6 (0.110)	5/242	NT	8.8%	intergenic (+89/‑82)	PP_0666/PP_0667	hypothetical protein/ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	= 775297	64 (1.160)					intergenic (+106/‑65)	PP_0666/PP_0667	hypothetical protein/ECF family RNA polymerase sigma‑70 factor
*	?	NC_002947	794567 =	59 (1.000)	5 (0.090)	3/250	NT	7.6%	coding (709/2439 nt)	PP_0680	ATP‑dependent protease‑like protein
	?	NC_002947	794630 =	64 (1.120)					coding (772/2439 nt)	PP_0680	ATP‑dependent protease‑like protein
*	?	NC_002947	800000 =	54 (0.920)	5 (0.090)	4/246	NT	7.9%	coding (473/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	800035 =	65 (1.160)					coding (438/969 nt)	ispB	octaprenyl diphosphate synthase
*	?	NC_002947	805362 =	50 (0.850)	4 (0.070)	4/244	NT	7.5%	coding (1968/2832 nt)	PP_0693	hypothetical protein
	?	NC_002947	805389 =	52 (0.930)					coding (1941/2832 nt)	PP_0693	hypothetical protein
*	?	NC_002947	866552 =	40 (0.680)	3 (0.050)	3/244	NT	7.1%	coding (5/474 nt)	PP_0748	hypothetical protein
	?	NC_002947	866595 =	41 (0.740)					coding (48/474 nt)	PP_0748	hypothetical protein
*	?	NC_002947	= 879400	54 (0.920)	3 (0.050)	3/246	NT	5.9%	coding (929/1683 nt)	PP_0763	medium‑chain‑fatty acid CoA ligase
	?	NC_002947	= 879456	44 (0.780)					coding (985/1683 nt)	PP_0763	medium‑chain‑fatty acid CoA ligase
*	?	NC_002947	= 889027	46 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (457/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 889058	44 (0.780)					coding (488/693 nt)	PP_0769	sensor histidine kinase
*	?	NC_002947	= 907821	51 (0.870)	4 (0.070)	4/244	NT	8.0%	coding (390/777 nt)	yjjV	putative hydrolase
	?	NC_002947	= 907870	44 (0.790)					coding (341/777 nt)	yjjV	putative hydrolase
*	?	NC_002947	918900 =	60 (1.020)	5 (0.090)	3/246	NT	8.3%	coding (200/1335 nt)	opdC	histidine‑specific outer membrane porin D
	?	NC_002947	918958 =	53 (0.940)					coding (142/1335 nt)	opdC	histidine‑specific outer membrane porin D
*	?	NC_002947	929128 =	39 (0.660)	3 (0.050)	3/250	NT	6.3%	coding (16494/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	929206 =	52 (0.910)					coding (16416/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	938609 =	39 (0.660)	3 (0.050)	3/246	NT	6.7%	coding (7013/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	938682 =	46 (0.820)					coding (6940/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 981803	48 (0.820)	4 (0.070)	4/244	NT	7.8%	coding (680/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 981841	49 (0.880)					coding (718/1863 nt)	hscA	DnaK‑like molecular chaperone
*	?	NC_002947	= 984482	56 (0.950)	3 (0.050)	3/250	NT	5.1%	coding (398/1146 nt)	rlmN	23S rRNA (adenine(2503)‑C(2))‑methyltransferase RlmN
	?	NC_002947	= 984517	57 (1.000)					coding (433/1146 nt)	rlmN	23S rRNA (adenine(2503)‑C(2))‑methyltransferase RlmN
*	?	NC_002947	= 1015791	50 (0.850)	4 (0.070)	4/244	NT	7.4%	coding (450/1431 nt)	PP_0875	hypothetical protein
	?	NC_002947	= 1015814	53 (0.950)					coding (427/1431 nt)	PP_0875	hypothetical protein
*	?	NC_002947	1019834 =	64 (1.090)	4 (0.070)	4/244	NT	6.8%	coding (195/969 nt)	dppD	dipeptide ABC transporter ATP‑binding protein
	?	NC_002947	1019918 =	49 (0.880)					coding (111/969 nt)	dppD	dipeptide ABC transporter ATP‑binding protein
*	?	NC_002947	1028604 =	61 (1.040)	4 (0.070)	4/246	NT	6.7%	coding (136/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1028658 =	54 (0.960)					coding (82/1626 nt)	dppA‑III	dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1034742 =	40 (0.680)	3 (0.050)	3/248	NT	6.8%	coding (779/1158 nt)	PP_0892	phospholipase family protein
	?	NC_002947	1034782 =	44 (0.780)					coding (819/1158 nt)	PP_0892	phospholipase family protein
*	?	NC_002947	= 1051409	50 (0.850)	5 (0.090)	4/246	NT	9.6%	coding (511/1065 nt)	PP_0909	hypothetical protein
	?	NC_002947	= 1051421	46 (0.820)					coding (499/1065 nt)	PP_0909	hypothetical protein
*	?	NC_002947	1071578 =	55 (0.930)	4 (0.070)	3/248	NT	7.8%	coding (243/375 nt)	PP_0929	lipoprotein
	?	NC_002947	1071621 =	42 (0.740)					coding (200/375 nt)	PP_0929	lipoprotein
*	?	NC_002947	= 1098127	64 (1.090)	5 (0.090)	5/248	NT	7.0%	coding (452/525 nt)	kdsC	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
	?	NC_002947	= 1098196	72 (1.270)					coding (383/525 nt)	kdsC	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
*	?	NC_002947	= 1098363	58 (0.990)	5 (0.090)	5/248	NT	8.8%	coding (216/525 nt)	kdsC	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
	?	NC_002947	= 1098419	48 (0.850)					coding (160/525 nt)	kdsC	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
*	?	NC_002947	1102881 =	73 (1.240)	7 (0.130)	5/242	NT	9.1%	intergenic (+20/‑98)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
	?	NC_002947	1102927 =	71 (1.290)					intergenic (+66/‑52)	ttg2E/ttg2F	toluene‑tolerance protein/BolA family protein
*	?	NC_002947	= 1134218	43 (0.730)	4 (0.070)	4/246	NT	8.9%	coding (1121/1206 nt)	gltS	glutamate:sodium symporter
	?	NC_002947	= 1134278	41 (0.730)					coding (1061/1206 nt)	gltS	glutamate:sodium symporter
*	?	NC_002947	1138585 =	48 (0.820)	3 (0.050)	3/246	NT	6.2%	intergenic (‑116/+49)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1138647 =	45 (0.800)					coding (998/1011 nt)	arcB	ornithine carbamoyltransferase
*	?	NC_002947	1154814 =	58 (0.990)	3 (0.050)	3/240	NT	5.5%	coding (678/726 nt)	gltR‑II	two‑component system response regulator
	?	NC_002947	1154888 =	49 (0.900)					coding (46/1455 nt)	PP_1013	sensor histidine kinase
*	?	NC_002947	= 1160293	43 (0.730)	4 (0.070)	3/238	NT	8.1%	coding (105/846 nt)	gtsC	mannose/glucose ABC transporter permease
	?	NC_002947	= 1160322	51 (0.940)					coding (134/846 nt)	gtsC	mannose/glucose ABC transporter permease
*	?	NC_002947	1167314 =	58 (0.990)	3 (0.050)	3/250	NT	5.3%	coding (258/729 nt)	pgl	6‑phosphogluconolactonase
	?	NC_002947	1167364 =	52 (0.910)					coding (308/729 nt)	pgl	6‑phosphogluconolactonase
*	?	NC_002947	1172783 =	46 (0.780)	3 (0.050)	3/244	NT	7.0%	coding (270/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
	?	NC_002947	1172837 =	36 (0.650)					coding (216/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
*	?	NC_002947	= 1176374	40 (0.680)	3 (0.050)	3/246	NT	6.4%	coding (805/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
	?	NC_002947	= 1176433	49 (0.870)					coding (864/1470 nt)	guaB	IMP dehydrogenase and single strand DNA binding factor
*	?	NC_002947	1189708 =	41 (0.700)	3 (0.050)	3/242	NT	7.5%	coding (106/762 nt)	tatC‑I	Sec‑independent protein translocase protein
	?	NC_002947	1189773 =	36 (0.650)					coding (41/762 nt)	tatC‑I	Sec‑independent protein translocase protein
*	?	NC_002947	= 1206083	50 (0.850)	4 (0.070)	4/248	NT	8.3%	coding (2918/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	= 1206115	40 (0.710)					coding (2886/3150 nt)	PP_1058	hypothetical protein
*	?	NC_002947	= 1261918	57 (0.970)	5 (0.090)	4/252	NT	7.7%	coding (717/1116 nt)	PP_1104	AotO‑related protein
	?	NC_002947	= 1261951	64 (1.110)					coding (684/1116 nt)	PP_1104	AotO‑related protein
*	?	NC_002947	= 1290805	64 (1.090)	4 (0.070)	3/244	NT	6.3%	coding (2078/2349 nt)	PP_1126	hydrolase
	?	NC_002947	= 1290838	58 (1.040)					coding (2111/2349 nt)	PP_1126	hydrolase
*	?	NC_002947	1296784 =	NA (NA)	13 (0.230)	7/244	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1306231	53 (0.900)	3 (0.050)	3/244	NT	5.4%	coding (86/924 nt)	livH	branched‑chain amino acid ABC transporter permease
	?	NC_002947	= 1306264	54 (0.970)					coding (53/924 nt)	livH	branched‑chain amino acid ABC transporter permease
*	?	NC_002947	= 1322649	46 (0.780)	4 (0.070)	3/250	NT	7.7%	coding (82/2586 nt)	PP_1154	sensory box protein
	?	NC_002947	= 1322690	51 (0.890)					coding (41/2586 nt)	PP_1154	sensory box protein
*	?	NC_002947	= 1331485	6 (0.100)	3 (0.050)	3/250	NT	50.8%	coding (710/1644 nt)	PP_1157	acetolactate synthase
	?	NC_002947	3808957 =	0 (0.000)					coding (742/1644 nt)	PP_3365	acetolactate synthase
*	?	NC_002947	= 1338700	63 (1.070)	4 (0.070)	4/244	NT	6.4%	coding (1416/2037 nt)	PP_1163	FAD‑binding oxidoreductase
	?	NC_002947	= 1338742	58 (1.040)					coding (1458/2037 nt)	PP_1163	FAD‑binding oxidoreductase
*	?	NC_002947	= 1357723	45 (0.760)	4 (0.070)	4/248	NT	7.8%	coding (904/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357754	51 (0.900)					coding (935/1608 nt)	PP_1182	sensor histidine kinase
*	?	NC_002947	1386017 =	52 (0.880)	4 (0.070)	4/252	NT	6.7%	coding (440/1266 nt)	oprD	basic amino acid specific porin OprD
	?	NC_002947	1386097 =	61 (1.060)					coding (360/1266 nt)	oprD	basic amino acid specific porin OprD
*	?	NC_002947	= 1426326	NA (NA)	5 (0.090)	3/250	NT	100%	coding (224/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426369	0 (0.000)					coding (267/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1426800 =	NA (NA)	9 (0.160)	5/252	NT	NA	coding (698/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	1426860 =	NA (NA)					coding (758/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1436018 =	59 (1.000)	3 (0.050)	3/242	NT	5.2%	intergenic (‑55/+98)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436095 =	55 (1.000)					intergenic (‑132/+21)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
*	?	NC_002947	= 1437733	34 (0.580)	3 (0.050)	3/244	NT	9.2%	coding (300/927 nt)	prpA	4‑hydroxyproline epimerase
	?	NC_002947	= 1437768	27 (0.490)					coding (265/927 nt)	prpA	4‑hydroxyproline epimerase
*	?	NC_002947	1437847 =	32 (0.540)	3 (0.050)	3/248	NT	6.3%	coding (186/927 nt)	prpA	4‑hydroxyproline epimerase
	?	NC_002947	1437921 =	59 (1.040)					coding (112/927 nt)	prpA	4‑hydroxyproline epimerase
*	?	NC_002947	= 1491783	63 (1.070)	5 (0.090)	5/250	NT	7.9%	coding (1446/1902 nt)	cysNC	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
	?	NC_002947	= 1491813	56 (0.980)					coding (1476/1902 nt)	cysNC	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
*	?	NC_002947	1499507 =	4 (0.070)	10 (0.190)	7/234	NT	22.3%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	66 (1.240)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	1508562 =	52 (0.880)	4 (0.070)	4/252	NT	7.1%	coding (140/579 nt)	PP_1322	lipoprotein
	?	NC_002947	1508615 =	54 (0.940)					coding (87/579 nt)	PP_1322	lipoprotein
*	?	NC_002947	1521400 =	51 (0.870)	5 (0.090)	4/248	NT	9.3%	coding (657/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
	?	NC_002947	1521439 =	49 (0.870)					coding (696/1353 nt)	murD	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_002947	= 1567580	61 (1.040)	4 (0.070)	3/244	NT	6.6%	coding (64/1347 nt)	pcaK	4‑hydroxybenzoate transporter
	?	NC_002947	= 1567608	56 (1.010)					coding (92/1347 nt)	pcaK	4‑hydroxybenzoate transporter
*	?	NC_002947	= 1591794	57 (0.970)	3 (0.050)	3/244	NT	5.2%	coding (100/921 nt)	PP_1395	AraC family transcriptional regulator
	?	NC_002947	= 1591834	56 (1.010)					coding (60/921 nt)	PP_1395	AraC family transcriptional regulator
*	?	NC_002947	1650401 =	51 (0.870)	6 (0.110)	4/244	NT	11.5%	coding (659/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	1650448 =	44 (0.790)					coding (612/2043 nt)	PP_1446	TonB‑dependent receptor
*	?	NC_002947	= 1687949	48 (0.820)	3 (0.050)	3/246	NT	6.5%	coding (555/912 nt)	ydcU	polyamine ABC transporter permease
	?	NC_002947	= 1687999	41 (0.730)					coding (505/912 nt)	ydcU	polyamine ABC transporter permease
*	?	NC_002947	= 1694311	68 (1.160)	4 (0.070)	3/248	NT	5.7%	coding (277/1275 nt)	wspC	biofilm formation methyltransferase WspC
	?	NC_002947	= 1694333	66 (1.170)					coding (299/1275 nt)	wspC	biofilm formation methyltransferase WspC
*	?	NC_002947	= 1722035	67 (1.140)	4 (0.070)	4/250	NT	6.5%	coding (668/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	= 1722076	51 (0.890)					coding (709/3066 nt)	PP_1517	RND family transporter
*	?	NC_002947	1733801 =	50 (0.850)	3 (0.050)	3/248	NT	5.8%	coding (69/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	1733847 =	50 (0.880)					coding (23/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1751753 =	58 (0.990)	5 (0.090)	4/248	NT	7.8%	coding (160/705 nt)	PP_1552	replication protein
	?	NC_002947	1751835 =	62 (1.100)					coding (242/705 nt)	PP_1552	replication protein
*	?	NC_002947	= 1792213	59 (1.000)	4 (0.070)	3/246	NT	6.6%	coding (863/1359 nt)	rseP	regulatory intramembrane protein RIP
	?	NC_002947	= 1792243	57 (1.020)					coding (893/1359 nt)	rseP	regulatory intramembrane protein RIP
*	?	NC_002947	1798151 =	44 (0.750)	5 (0.090)	4/254	NT	11.9%	coding (74/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798208 =	31 (0.540)					coding (131/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
*	?	NC_002947	= 1799873	30 (0.510)	7 (0.140)	7/212	NT	22.0%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799915	25 (0.520)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
*	?	NC_002947	1809743 =	65 (1.100)	4 (0.070)	4/248	NT	5.9%	coding (794/1290 nt)	eno	enolase
	?	NC_002947	1809773 =	65 (1.150)					coding (824/1290 nt)	eno	enolase
*	?	NC_002947	1817940 =	57 (0.970)	4 (0.070)	4/250	NT	6.7%	coding (82/789 nt)	PP_1622	M23B subfamily metallopeptidase
	?	NC_002947	1817983 =	57 (1.000)					coding (125/789 nt)	PP_1622	M23B subfamily metallopeptidase
*	?	NC_002947	= 1839126	43 (0.730)	4 (0.070)	4/246	NT	8.2%	coding (43/606 nt)	PP_1644	NAD(P)H dehydrogenase
	?	NC_002947	= 1839157	48 (0.860)					coding (12/606 nt)	PP_1644	NAD(P)H dehydrogenase
*	?	NC_002947	1843013 =	50 (0.850)	3 (0.050)	3/244	NT	6.1%	coding (1781/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1843050 =	45 (0.810)					coding (1744/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1843419	61 (1.040)	4 (0.070)	4/246	NT	6.3%	coding (1375/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1843446	60 (1.070)					coding (1348/2754 nt)	gacS	sensor protein GacS
*	?	NC_002947	= 1857897	47 (0.800)	4 (0.070)	3/242	NT	8.6%	coding (1076/2259 nt)	PP_1661	dehydrogenase
	?	NC_002947	= 1857926	41 (0.740)					coding (1105/2259 nt)	PP_1661	dehydrogenase
*	?	NC_002947	1869160 =	55 (0.930)	3 (0.050)	3/248	NT	5.2%	coding (1274/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
	?	NC_002947	1869207 =	56 (0.990)					coding (29/651 nt)	bluB	5,6‑dimethylbenzimidazole synthase
*	?	NC_002947	= 1869254	61 (1.040)	5 (0.090)	5/248	NT	8.5%	coding (76/651 nt)	bluB	5,6‑dimethylbenzimidazole synthase
	?	NC_002947	= 1869315	49 (0.870)					coding (137/651 nt)	bluB	5,6‑dimethylbenzimidazole synthase
*	?	NC_002947	1878286 =	63 (1.070)	4 (0.070)	4/244	NT	6.7%	coding (408/1221 nt)	PP_1684	transporter
	?	NC_002947	1878342 =	52 (0.930)					coding (464/1221 nt)	PP_1684	transporter
*	?	NC_002947	1900862 =	44 (0.750)	4 (0.070)	4/252	NT	8.9%	coding (1413/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1900910 =	39 (0.680)					coding (1461/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1923013	50 (0.850)	5 (0.090)	4/248	NT	9.1%	coding (231/990 nt)	PP_1722	ABC transporter ATP‑binding protein
	?	NC_002947	= 1923036	52 (0.920)					coding (208/990 nt)	PP_1722	ABC transporter ATP‑binding protein
*	?	NC_002947	1948946 =	68 (1.160)	3 (0.050)	3/240	NT	5.2%	coding (709/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	1948996 =	46 (0.840)					coding (659/1746 nt)	PP_1749	acetyltransferase
*	?	NC_002947	= 1996831	40 (0.680)	4 (0.070)	4/246	NT	9.4%	coding (638/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase
	?	NC_002947	= 1996863	39 (0.700)					coding (606/882 nt)	rfbA	dTDP‑glucose pyrophosphorylase
*	?	NC_002947	= 2037947	48 (0.820)	4 (0.070)	4/236	NT	7.9%	noncoding (70/89 nt)	PP_mr27	C4 ncRNA
	?	NC_002947	= 2038002	49 (0.910)					noncoding (15/89 nt)	PP_mr27	C4 ncRNA
*	?	NC_002947	2059968 =	57 (0.970)	3 (0.050)	3/240	NT	5.9%	coding (661/939 nt)	PP_1836	ZIP family metal transporter
	?	NC_002947	2060019 =	43 (0.790)					coding (610/939 nt)	PP_1836	ZIP family metal transporter
*	?	NC_002947	= 2085498	44 (0.750)	3 (0.050)	3/246	NT	6.1%	intergenic (+207/‑388)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	4022795 =	50 (0.890)					intergenic (‑490/+178)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	2085878 =	NA (NA)	5 (0.090)	5/254	NT	NA	intergenic (+587/‑8)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085923 =	NA (NA)					coding (38/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086080 =	NA (NA)	4 (0.070)	3/248	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086243 =	NA (NA)	3 (0.050)	3/242	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	2099960 =	27 (0.460)	4 (0.080)	4/212	NT	19.9%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100055 =	10 (0.210)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2115901	57 (0.970)	3 (0.050)	3/244	NT	5.0%	coding (1421/1806 nt)	PP_1883	hypothetical protein
	?	NC_002947	= 2115920	60 (1.080)					coding (1440/1806 nt)	PP_1883	hypothetical protein
*	?	NC_002947	= 2180702	53 (0.900)	7 (0.130)	7/242	NT	12.3%	intergenic (‑147/‑77)	PP_1932/PP_1934	hypothetical protein/hypothetical protein
	?	NC_002947	= 2180718	50 (0.910)					intergenic (‑163/‑61)	PP_1932/PP_1934	hypothetical protein/hypothetical protein
*	?	NC_002947	= 2193303	69 (1.170)	4 (0.070)	4/244	NT	6.0%	intergenic (+397/‑26)	PP_1938/PP_1939	hypothetical protein/hypothetical protein
	?	NC_002947	= 2193365	59 (1.060)					coding (37/144 nt)	PP_1939	hypothetical protein
*	?	NC_002947	2202174 =	49 (0.830)	3 (0.050)	3/240	NT	6.1%	intergenic (+31/‑150)	PP_1946/PP_1947	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
	?	NC_002947	2202214 =	47 (0.860)					intergenic (+71/‑110)	PP_1946/PP_1947	short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein
*	?	NC_002947	2242181 =	49 (0.830)	4 (0.070)	4/242	NT	7.8%	intergenic (+42/‑1)	PP_t29/PP_t30	tRNA‑Ala/tRNA‑Glu
	?	NC_002947	2242255 =	48 (0.870)					noncoding (74/76 nt)	PP_t30	tRNA‑Glu
*	?	NC_002947	2244311 =	53 (0.900)	4 (0.070)	4/244	NT	7.3%	coding (343/435 nt)	PP_1980	hypothetical protein
	?	NC_002947	2244377 =	51 (0.920)					coding (409/435 nt)	PP_1980	hypothetical protein
*	?	NC_002947	= 2256178	41 (0.700)	7 (0.130)	3/242	NT	14.8%	intergenic (+238/‑466)	asd/PP_1990	aspartate‑semialdehyde dehydrogenase/transposase
	?	NC_002947	4022751 =	42 (0.760)					intergenic (‑446/+222)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	2278188 =	137 (2.330)	8 (0.140)	5/244	NT	6.1%	coding (392/1233 nt)	PP_2007	P‑47‑like protein
	?	NC_002947	2278231 =	117 (2.100)					coding (349/1233 nt)	PP_2007	P‑47‑like protein
*	?	NC_002947	2301453 =	0 (0.000)	113 (1.970)	87/252	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	83 (1.430)	66/254	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2303118	105 (1.780)	6 (0.110)	6/238	NT	5.9%	intergenic (‑203/+92)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	= 2303178	96 (1.770)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	2310780 =	103 (1.750)	6 (0.110)	5/234	NT	6.4%	coding (531/1311 nt)	PP_2033	hypothetical protein
	?	NC_002947	2310845 =	81 (1.520)					coding (596/1311 nt)	PP_2033	hypothetical protein
*	?	NC_002947	2357050 =	94 (1.600)	5 (0.090)	5/238	NT	5.1%	coding (328/387 nt)	PP_2071	hypothetical protein
	?	NC_002947	2357122 =	98 (1.810)					coding (256/387 nt)	PP_2071	hypothetical protein
*	?	NC_002947	2414737 =	58 (0.990)	5 (0.090)	5/242	NT	7.0%	intergenic (+279/‑66)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	2414830 =	78 (1.410)					coding (28/198 nt)	PP_2115	hypothetical protein
*	?	NC_002947	2453996 =	129 (2.190)	7 (0.120)	7/246	NT	5.5%	coding (1123/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2454041 =	116 (2.070)					coding (1078/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	2456170 =	102 (1.730)	6 (0.110)	6/248	NT	5.5%	coding (885/1464 nt)	gapB	glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	2456213 =	110 (1.950)					coding (928/1464 nt)	gapB	glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	2468545 =	135 (2.290)	6 (0.110)	5/244	NT	5.1%	coding (378/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
	?	NC_002947	2468600 =	96 (1.730)					coding (323/564 nt)	PP_2162	phosphonoacetaldehyde phosphonohydrolase‑like protein
*	?	NC_002947	2476810 =	108 (1.840)	10 (0.180)	5/244	NT	9.1%	coding (345/699 nt)	PP_2170	chorismate mutase family protein
	?	NC_002947	2476835 =	97 (1.740)					coding (370/699 nt)	PP_2170	chorismate mutase family protein
*	?	NC_002947	= 2506455	111 (1.890)	6 (0.110)	5/244	NT	5.2%	coding (1055/1107 nt)	PP_2199	hypothetical protein
	?	NC_002947	= 2506475	116 (2.080)					coding (1075/1107 nt)	PP_2199	hypothetical protein
*	?	NC_002947	= 2575962	47 (0.800)	3 (0.050)	3/244	NT	6.6%	coding (1139/1689 nt)	PP_2258	sensory box protein
	?	NC_002947	= 2576042	40 (0.720)					coding (1219/1689 nt)	PP_2258	sensory box protein
*	?	NC_002947	2578667 =	51 (0.870)	6 (0.110)	4/242	NT	11.2%	coding (77/1095 nt)	PP_2260	glycerol‑phosphate ABC transporter ATP‑binding protein
	?	NC_002947	2578743 =	47 (0.850)					coding (153/1095 nt)	PP_2260	glycerol‑phosphate ABC transporter ATP‑binding protein
*	?	NC_002947	= 2622970	53 (0.900)	5 (0.090)	4/250	NT	8.0%	coding (139/333 nt)	PP_5517	hypothetical protein
	?	NC_002947	= 2623016	63 (1.110)					coding (185/333 nt)	PP_5517	hypothetical protein
*	?	NC_002947	= 2678441	55 (0.930)	4 (0.070)	4/248	NT	6.4%	coding (782/1320 nt)	PP_2348	sensor histidine kinase
	?	NC_002947	= 2678519	65 (1.150)					coding (860/1320 nt)	PP_2348	sensor histidine kinase
*	?	NC_002947	= 2680661	54 (0.920)	5 (0.090)	5/242	NT	9.1%	coding (594/867 nt)	PP_2350	LysR family transcriptional regulator
	?	NC_002947	= 2680746	49 (0.890)					coding (509/867 nt)	PP_2350	LysR family transcriptional regulator
*	?	NC_002947	= 2724592	53 (0.900)	3 (0.050)	3/250	NT	5.5%	intergenic (‑1/+147)	azlC/PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
	?	NC_002947	= 2724623	52 (0.910)					intergenic (‑32/+116)	azlC/PP_2386	branched‑chain amino acid transport protein AzlC/hypothetical protein
*	?	NC_002947	2737153 =	39 (0.660)	3 (0.050)	3/248	NT	6.7%	coding (4051/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
	?	NC_002947	2737195 =	46 (0.810)					coding (4093/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2747226	34 (0.580)	4 (0.070)	4/246	NT	10.1%	coding (543/1287 nt)	PP_2402	sensor histidine kinase
	?	NC_002947	= 2747251	39 (0.700)					coding (518/1287 nt)	PP_2402	sensor histidine kinase
*	?	NC_002947	= 2771400	52 (0.880)	4 (0.070)	4/250	NT	7.3%	coding (100/546 nt)	PP_2424	2'‑5' RNA ligase
	?	NC_002947	= 2771431	51 (0.890)					coding (131/546 nt)	PP_2424	2'‑5' RNA ligase
*	?	NC_002947	= 2778210	52 (0.880)	3 (0.050)	3/248	NT	5.6%	coding (176/831 nt)	PP_2430	AraC family transcriptional regulator
	?	NC_002947	= 2778237	52 (0.920)					coding (149/831 nt)	PP_2430	AraC family transcriptional regulator
*	?	NC_002947	2780527 =	46 (0.780)	3 (0.050)	3/250	NT	5.8%	coding (301/480 nt)	PP_2433	hypothetical protein
	?	NC_002947	2780572 =	52 (0.910)					coding (346/480 nt)	PP_2433	hypothetical protein
*	?	NC_002947	= 2786752	49 (0.830)	5 (0.090)	5/240	NT	9.0%	intergenic (‑84/‑238)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
	?	NC_002947	= 2786780	55 (1.000)					intergenic (‑112/‑210)	alx/ahpC	alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit
*	?	NC_002947	= 2830841	52 (0.880)	4 (0.070)	4/250	NT	7.4%	coding (102/600 nt)	PP_2483	hypothetical protein
	?	NC_002947	= 2830893	50 (0.880)					coding (50/600 nt)	PP_2483	hypothetical protein
*	?	NC_002947	= 2833634	48 (0.820)	4 (0.070)	4/250	NT	6.9%	coding (210/1125 nt)	PP_2486	Oye family NADH‑dependent flavin oxidoreductase
	?	NC_002947	= 2833660	62 (1.090)					coding (184/1125 nt)	PP_2486	Oye family NADH‑dependent flavin oxidoreductase
*	?	NC_002947	2881022 =	50 (0.850)	3 (0.050)	3/242	NT	5.9%	coding (864/1176 nt)	PP_2535	transport protein
	?	NC_002947	2881070 =	48 (0.870)					coding (912/1176 nt)	PP_2535	transport protein
*	?	NC_002947	= 2899473	46 (0.780)	3 (0.050)	3/248	NT	7.0%	coding (1157/1374 nt)	PP_2553	MFS transporter
	?	NC_002947	= 2899506	36 (0.640)					coding (1124/1374 nt)	PP_2553	MFS transporter
*	?	NC_002947	2927982 =	66 (1.120)	8 (0.140)	7/246	NT	11.6%	coding (1249/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2928033 =	59 (1.050)					coding (1300/2472 nt)	PP_2565	UvrD/REP family helicase
*	?	NC_002947	= 2937902	NA (NA)	3 (0.050)	3/244	NT	NA	coding (1153/1329 nt)	PP_2570	transposase
	?	NC_002947	= 2937938	NA (NA)					coding (1117/1329 nt)	PP_2570	transposase
*	?	NC_002947	= 2948647	41 (0.700)	5 (0.090)	5/246	NT	11.1%	coding (435/591 nt)	PP_2582	heme oxygenase
	?	NC_002947	= 2948671	41 (0.730)					coding (411/591 nt)	PP_2582	heme oxygenase
*	?	NC_002947	= 2986914	25 (0.420)	3 (0.050)	3/242	NT	12.1%	coding (1485/2991 nt)	PP_2612	membrane protein
	?	NC_002947	4109619 =	20 (0.360)					coding (1441/2991 nt)	PP_3616	membrane protein
*	?	NC_002947	= 3023022	50 (0.850)	8 (0.140)	8/246	NT	15.0%	intergenic (+41/‑297)	PP_2638/dapA‑II	cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	= 3023052	43 (0.770)					intergenic (+71/‑267)	PP_2638/dapA‑II	cellulose synthase operon protein C/4‑hydroxy‑tetrahydrodipicolinate synthase
*	?	NC_002947	3045182 =	46 (0.780)	6 (0.110)	5/250	NT	11.6%	coding (724/969 nt)	pstC	phosphate ABC transporter permease
	?	NC_002947	3045215 =	47 (0.820)					coding (757/969 nt)	pstC	phosphate ABC transporter permease
*	?	NC_002947	3077686 =	46 (0.780)	3 (0.050)	3/246	NT	5.9%	coding (167/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077751 =	51 (0.910)					coding (102/951 nt)	PP_2687	hypothetical protein
*	?	NC_002947	= 3093175	58 (0.990)	4 (0.070)	4/246	NT	5.9%	coding (911/1131 nt)	PP_2702	porin
	?	NC_002947	= 3093243	72 (1.280)					coding (843/1131 nt)	PP_2702	porin
*	?	NC_002947	= 3135380	53 (0.900)	3 (0.050)	3/246	NT	6.0%	coding (33/1335 nt)	PP_2752	hypothetical protein
	?	NC_002947	= 3135418	44 (0.780)					coding (71/1335 nt)	PP_2752	hypothetical protein
*	?	NC_002947	3217405 =	55 (0.930)	3 (0.050)	3/246	NT	5.2%	coding (195/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217500 =	57 (1.020)					coding (290/1407 nt)	oprJ	outer membrane protein OprJ
*	?	NC_002947	3227945 =	44 (0.750)	3 (0.050)	3/244	NT	6.7%	coding (784/1386 nt)	PP_2828	hypothetical protein
	?	NC_002947	3227981 =	42 (0.750)					coding (820/1386 nt)	PP_2828	hypothetical protein
*	?	NC_002947	3241792 =	54 (0.920)	3 (0.050)	3/248	NT	5.0%	coding (1488/1650 nt)	PP_2838	hypothetical protein
	?	NC_002947	3241839 =	62 (1.100)					coding (1535/1650 nt)	PP_2838	hypothetical protein
*	?	NC_002947	3245851 =	70 (1.190)	4 (0.070)	4/244	NT	6.8%	coding (106/879 nt)	PP_2841	site‑specific recombinase
	?	NC_002947	3245906 =	44 (0.790)					coding (161/879 nt)	PP_2841	site‑specific recombinase
*	?	NC_002947	3248244 =	52 (0.880)	4 (0.070)	4/246	NT	6.7%	coding (178/318 nt)	ureB	urease subunit beta
	?	NC_002947	3248295 =	61 (1.090)					coding (229/318 nt)	ureB	urease subunit beta
*	?	NC_002947	= 3332679	64 (1.090)	3 (0.060)	3/236	NT	5.6%	coding (426/918 nt)	PP_2930	L‑serine dehydratase
	?	NC_002947	= 3332719	43 (0.800)					coding (386/918 nt)	PP_2930	L‑serine dehydratase
*	?	NC_002947	= 3332939	45 (0.760)	4 (0.070)	4/250	NT	7.4%	coding (166/918 nt)	PP_2930	L‑serine dehydratase
	?	NC_002947	= 3332993	57 (1.000)					coding (112/918 nt)	PP_2930	L‑serine dehydratase
*	?	NC_002947	= 3345580	47 (0.800)	3 (0.060)	3/236	NT	6.9%	coding (920/1371 nt)	PP_2942	two‑component system response regulator
	?	NC_002947	= 3345648	38 (0.710)					coding (852/1371 nt)	PP_2942	two‑component system response regulator
*	?	NC_002947	3365363 =	50 (0.850)	6 (0.110)	6/242	NT	11.8%	coding (31/1002 nt)	PP_2962	alcohol dehydrogenase
	?	NC_002947	3365442 =	43 (0.780)					coding (110/1002 nt)	PP_2962	alcohol dehydrogenase
*	?	NC_002947	= 3387771	42 (0.710)	3 (0.050)	3/242	NT	6.9%	coding (552/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3387797	42 (0.760)					coding (578/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	3405864 =	37 (0.630)	4 (0.070)	3/246	NT	9.8%	coding (311/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase
	?	NC_002947	3405908 =	38 (0.680)					coding (355/501 nt)	ogt	O6‑methylguanine‑DNA methyltransferase
*	?	NC_002947	3435642 =	52 (0.880)	5 (0.090)	5/246	NT	8.0%	coding (554/981 nt)	gpJ	baseplate/tail fiber protein
	?	NC_002947	3435726 =	66 (1.180)					coding (638/981 nt)	gpJ	baseplate/tail fiber protein
*	?	NC_002947	3522702 =	70 (1.190)	10 (0.240) +36 bp	6/186	NT	20.1%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	= 4495703	40 (0.680)					coding (13/960 nt)	PP_3987	site‑specific recombinase
*	?	NC_002947	= 3547421	54 (0.920)	4 (0.070)	4/246	NT	6.8%	coding (366/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	= 3547482	58 (1.030)					coding (427/1377 nt)	PP_3132	polysaccharide transporter
*	?	NC_002947	3561306 =	41 (0.700)	3 (0.050)	3/250	NT	6.7%	coding (1061/1377 nt)	tdcG‑III	L‑serine dehydratase
	?	NC_002947	3561326 =	44 (0.770)					coding (1081/1377 nt)	tdcG‑III	L‑serine dehydratase
*	?	NC_002947	3577425 =	42 (0.710)	7 (0.130)	6/230	NT	15.8%	intergenic (+19/‑161)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
	?	NC_002947	3577480 =	37 (0.710)					intergenic (+74/‑106)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
*	?	NC_002947	3616748 =	45 (0.760)	3 (0.050)	3/244	NT	6.8%	coding (1083/1266 nt)	codB	cytosine transporter
	?	NC_002947	3616788 =	40 (0.720)					coding (1123/1266 nt)	codB	cytosine transporter
*	?	NC_002947	3622804 =	38 (0.650)	3 (0.050)	3/242	NT	7.5%	coding (1249/1344 nt)	PP_3194	hypothetical protein
	?	NC_002947	3622852 =	38 (0.690)					coding (1201/1344 nt)	PP_3194	hypothetical protein
*	?	NC_002947	3649022 =	48 (0.820)	4 (0.070)	4/248	NT	8.3%	intergenic (+499/+1192)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
	?	NC_002947	3649066 =	42 (0.740)					intergenic (+543/+1148)	PP_3214/PP_3216	hypothetical protein/cysteine dioxygenase
*	?	NC_002947	= 3654072	49 (0.830)	7 (0.120)	5/250	NT	13.7%	coding (561/1101 nt)	PP_3219	alkansulfonate monooxygenase
	?	NC_002947	= 3654130	41 (0.720)					coding (503/1101 nt)	PP_3219	alkansulfonate monooxygenase
*	?	NC_002947	3755008 =	58 (0.990)	3 (0.050)	3/244	NT	5.1%	coding (449/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein
	?	NC_002947	3755055 =	56 (1.010)					coding (496/2202 nt)	PP_3319	GGDEF domain‑containing sensory box protein
*	?	NC_002947	3822059 =	47 (0.800)	3 (0.050)	3/250	NT	6.6%	coding (1125/1293 nt)	kguT	2‑ketogluconate transporter, putative
	?	NC_002947	3822129 =	40 (0.700)					coding (1055/1293 nt)	kguT	2‑ketogluconate transporter, putative
*	?	NC_002947	= 3840186	68 (1.160)	4 (0.070)	4/246	NT	5.6%	coding (1109/1158 nt)	PP_3389	membrane protein
	?	NC_002947	= 3840209	71 (1.270)					coding (1132/1158 nt)	PP_3389	membrane protein
*	?	NC_002947	= 3849838	42 (0.710)	3 (0.050)	3/248	NT	6.4%	coding (1603/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	= 3849861	47 (0.830)					coding (1626/2268 nt)	PP_3397	hypothetical protein
*	?	NC_002947	3861236 =	56 (0.950)	3 (0.050)	3/246	NT	5.5%	coding (159/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3861283 =	49 (0.870)					coding (206/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	3874713 =	49 (0.830)	4 (0.070)	4/246	NT	8.8%	coding (195/594 nt)	ltg	lytic transglycosylase
	?	NC_002947	3874795 =	36 (0.640)					coding (113/594 nt)	ltg	lytic transglycosylase
*	?	NC_002947	= 3878284	66 (1.120)	5 (0.090)	3/248	NT	7.0%	coding (119/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3878313	70 (1.240)					coding (148/3180 nt)	mexF	multidrug RND transporter MexF
*	?	NC_002947	= 3911555	43 (0.730)	4 (0.070)	4/244	NT	8.4%	intergenic (+25/‑100)	PP_3451/PP_3452	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	= 3911606	47 (0.840)					intergenic (+76/‑49)	PP_3451/PP_3452	hypothetical protein/GGDEF domain‑containing protein
*	?	NC_002947	= 3912159	62 (1.050)	3 (0.050)	3/248	NT	5.1%	coding (505/1092 nt)	PP_3452	GGDEF domain‑containing protein
	?	NC_002947	= 3912189	51 (0.900)					coding (535/1092 nt)	PP_3452	GGDEF domain‑containing protein
*	?	NC_002947	3930006 =	47 (0.800)	3 (0.050)	3/248	NT	5.1%	coding (1102/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	3930103 =	66 (1.170)					coding (1005/1293 nt)	PP_5603	FAD dependent oxidoreductase
*	?	NC_002947	3947913 =	24 (0.410)	3 (0.070)	3/202	NT	18.9%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	7 (0.150)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	3960501 =	49 (0.830)	4 (0.070)	4/246	NT	8.2%	intergenic (‑117/‑212)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
	?	NC_002947	3960546 =	43 (0.770)					intergenic (‑162/‑167)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
*	?	NC_002947	= 3962198	38 (0.650)	4 (0.070)	3/238	NT	10.0%	coding (396/1152 nt)	PP_3492	acyl‑CoA dehydrogenase
	?	NC_002947	= 3962291	37 (0.680)					coding (489/1152 nt)	PP_3492	acyl‑CoA dehydrogenase
*	?	NC_002947	3969585 =	NA (NA)	3 (0.050)	3/244	NT	NA	coding (220/321 nt)	PP_3499	transposase
	?	NC_002947	3969623 =	NA (NA)					coding (258/321 nt)	PP_3499	transposase
*	?	NC_002947	= 3969591	NA (NA)	5 (0.090)	4/244	NT	NA	coding (226/321 nt)	PP_3499	transposase
	?	NC_002947	= 3969615	NA (NA)					coding (250/321 nt)	PP_3499	transposase
*	?	NC_002947	3969710 =	NA (NA)	4 (0.070)	4/250	NT	NA	coding (28/336 nt)	PP_3500	transposase
	?	NC_002947	3969740 =	NA (NA)					coding (58/336 nt)	PP_3500	transposase
*	?	NC_002947	3975820 =	60 (1.020)	4 (0.070)	4/246	NT	6.9%	intergenic (‑44/+34)	PP_3505/PP_3506	hypothetical protein/magnesium chelatase subunit ChII
	?	NC_002947	3975854 =	50 (0.890)					coding (1014/1014 nt)	PP_3506	magnesium chelatase subunit ChII
*	?	NC_002947	4081025 =	53 (0.900)	3 (0.050)	3/248	NT	5.2%	coding (913/999 nt)	dpkA	delta 1‑piperideine‑2‑carboxylate reductase
	?	NC_002947	4081085 =	58 (1.030)					coding (853/999 nt)	dpkA	delta 1‑piperideine‑2‑carboxylate reductase
*	?	NC_002947	4094105 =	47 (0.800)	3 (0.050)	3/246	NT	6.1%	coding (1102/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
	?	NC_002947	4094144 =	48 (0.860)					coding (1141/1581 nt)	PP_3602	2,5‑dioxovalerate dehydrogenase
*	?	NC_002947	= 4152200	50 (0.850)	4 (0.070)	3/244	NT	7.1%	coding (1024/1263 nt)	PP_3656	aromatic compound‑specific porin
	?	NC_002947	= 4152218	57 (1.020)					coding (1006/1263 nt)	PP_3656	aromatic compound‑specific porin
*	?	NC_002947	= 4186187	71 (1.210)	4 (0.070)	4/244	NT	5.5%	intergenic (+103/‑467)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
	?	NC_002947	= 4186222	69 (1.240)					intergenic (+138/‑432)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4225673	70 (1.190)	8 (0.140)	6/246	NT	10.6%	coding (425/1173 nt)	PP_3705	membrane protein
	?	NC_002947	= 4225699	68 (1.210)					coding (399/1173 nt)	PP_3705	membrane protein
*	?	NC_002947	4235852 =	51 (0.870)	4 (0.070)	4/250	NT	8.0%	coding (921/936 nt)	catA‑I	catechol 1,2‑dioxygenase
	?	NC_002947	4235890 =	43 (0.750)					coding (883/936 nt)	catA‑I	catechol 1,2‑dioxygenase
*	?	NC_002947	= 4247728	47 (0.800)	3 (0.050)	3/242	NT	6.1%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247766	48 (0.870)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
*	?	NC_002947	4258664 =	62 (1.050)	3 (0.050)	3/252	NT	5.1%	coding (211/747 nt)	PP_3732	enoyl‑CoA hydratase/isomerase family protein
	?	NC_002947	4258718 =	52 (0.900)					coding (265/747 nt)	PP_3732	enoyl‑CoA hydratase/isomerase family protein
*	?	NC_002947	= 4343304	55 (0.930)	4 (0.070)	4/244	NT	7.1%	coding (184/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
	?	NC_002947	= 4343341	52 (0.930)					coding (221/1149 nt)	PP_3817	polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	4378615 =	52 (0.880)	5 (0.090)	5/244	NT	9.1%	coding (98/540 nt)	PP_3854	lysozyme
	?	NC_002947	4378653 =	51 (0.920)					coding (60/540 nt)	PP_3854	lysozyme
*	?	NC_002947	= 4388547	46 (0.780)	3 (0.060)	3/238	NT	7.2%	coding (246/1263 nt)	PP_3864	FluMu DNA circulation protein
	?	NC_002947	= 4388623	35 (0.640)					coding (170/1263 nt)	PP_3864	FluMu DNA circulation protein
*	?	NC_002947	4407246 =	48 (0.820)	5 (0.090)	4/248	NT	9.6%	coding (598/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	4407282 =	48 (0.850)					coding (562/1299 nt)	PP_3889	putative Phage integrase
*	?	NC_002947	= 4474813	51 (0.870)	3 (0.050)	3/242	NT	5.8%	coding (723/1536 nt)	PP_3964	transposase
	?	NC_002947	= 4474834	50 (0.910)					coding (702/1536 nt)	PP_3964	transposase
*	?	NC_002947	4482286 =	44 (0.750)	4 (0.070)	4/244	NT	8.7%	coding (292/987 nt)	PP_3974	LysR family transcriptional regulator
	?	NC_002947	4482349 =	42 (0.750)					coding (355/987 nt)	PP_3974	LysR family transcriptional regulator
*	?	NC_002947	= 4533579	52 (0.880)	5 (0.090)	5/234	NT	10.7%	intergenic (+21/‑153)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4533644	36 (0.670)					intergenic (+86/‑88)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	4536203 =	NA (NA)	5 (0.080)	5/258	NT	12.5%	intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase
	?	NC_002947	4944914 =	35 (0.590)					intergenic (+274/+524)	PP_5673/flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein
*	?	NC_002947	4536700 =	NA (NA)	5 (0.090)	4/248	NT	7.9%	coding (35/1533 nt)	PP_4025	transposase
	?	NC_002947	= 4627423	61 (1.040)					coding (81/1533 nt)	PP_4091	transposase
*	?	NC_002947	4550424 =	71 (1.210)	4 (0.070)	4/248	NT	6.0%	coding (1161/1368 nt)	pydX	NADP‑dependent dihydropyrimidine dehydrogenase subunit
	?	NC_002947	4550462 =	57 (1.010)					coding (1199/1368 nt)	pydX	NADP‑dependent dihydropyrimidine dehydrogenase subunit
*	?	NC_002947	= 4583494	31 (0.530)	4 (0.080)	3/218	NT	17.0%	intergenic (‑67/+104)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4583555	13 (0.260)					intergenic (‑128/+43)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
*	?	NC_002947	= 4586029	7 (0.120)	16 (0.300)	11/236	NT	47.5%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	29 (0.540)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4586321	60 (1.020)	4 (0.070)	4/244	NT	6.9%	coding (1494/1683 nt)	PP_4063	long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586353	52 (0.930)					coding (1462/1683 nt)	PP_4063	long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4626524 =	NA (NA)	13 (0.220)	5/258	NT	NA	coding (980/1533 nt)	PP_4091	transposase
	?	NC_002947	4626581 =	NA (NA)					coding (923/1533 nt)	PP_4091	transposase
*	?	NC_002947	4652318 =	77 (1.310)	4 (0.070)	3/246	NT	5.7%	coding (90/804 nt)	PP_4115	hypothetical protein
	?	NC_002947	4652370 =	60 (1.070)					coding (142/804 nt)	PP_4115	hypothetical protein
*	?	NC_002947	= 4655559	49 (0.830)	4 (0.070)	4/248	NT	7.7%	coding (454/696 nt)	PP_4118	membrane protein
	?	NC_002947	= 4655583	49 (0.870)					coding (478/696 nt)	PP_4118	membrane protein
*	?	NC_002947	= 4714413	49 (0.830)	3 (0.050)	3/244	NT	6.0%	coding (531/891 nt)	PP_4172	hypothetical protein
	?	NC_002947	= 4714448	48 (0.860)					coding (566/891 nt)	PP_4172	hypothetical protein
*	?	NC_002947	= 4728851	74 (1.260)	4 (0.070)	4/244	NT	5.6%	coding (985/1167 nt)	sucC	bifunctional succinyl‑CoA synthetase subunit beta/glutaryl‑CoA synthetase subunit beta
	?	NC_002947	= 4728875	66 (1.190)					coding (961/1167 nt)	sucC	bifunctional succinyl‑CoA synthetase subunit beta/glutaryl‑CoA synthetase subunit beta
*	?	NC_002947	= 4730637	52 (0.880)	4 (0.070)	4/244	NT	6.6%	coding (807/1437 nt)	lpdG	dihydrolipoyl dehydrogenase
	?	NC_002947	= 4730674	64 (1.150)					coding (770/1437 nt)	lpdG	dihydrolipoyl dehydrogenase
*	?	NC_002947	= 4734867	47 (0.800)	3 (0.050)	3/250	NT	5.9%	coding (768/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	= 4734922	50 (0.880)					coding (713/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	4808174 =	0 (0.000)	18 (0.420)	10/188	NT	50.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	36 (0.840)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	19 (0.360)	9/234	NT	42.7%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	51 (0.960)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4889569 =	35 (0.590)	4 (0.090)	4/204	NT	17.5%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889660 =	10 (0.210)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	= 4905822	61 (1.040)	3 (0.050)	3/248	NT	5.3%	coding (201/489 nt)	PP_4314	hypothetical protein
	?	NC_002947	= 4905848	49 (0.870)					coding (175/489 nt)	PP_4314	hypothetical protein
*	?	NC_002947	= 4920753	65 (1.100)	4 (0.070)	4/248	NT	6.6%	coding (1162/2682 nt)	PP_4330	toxin‑like protein
	?	NC_002947	= 4920795	50 (0.880)					coding (1204/2682 nt)	PP_4330	toxin‑like protein
*	?	NC_002947	= 4923643	15 (0.250)	5 (0.090)	5/242	NT	23.8%	coding (553/897 nt)	PP_4333	CheW domain‑containing protein
	?	NC_002947	= 4923663	18 (0.330)					coding (533/897 nt)	PP_4333	CheW domain‑containing protein
*	?	NC_002947	4933522 =	58 (0.990)	4 (0.070)	3/240	NT	7.3%	coding (927/1308 nt)	flhF	flagellar biosynthesis protein FlhF
	?	NC_002947	4933601 =	48 (0.880)					coding (848/1308 nt)	flhF	flagellar biosynthesis protein FlhF
*	?	NC_002947	4963231 =	51 (0.870)	4 (0.070)	4/246	NT	7.4%	coding (424/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4963267 =	51 (0.910)					coding (388/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
*	?	NC_002947	4973886 =	54 (0.920)	3 (0.050)	3/240	NT	6.0%	coding (1718/2043 nt)	flgK	flagellar hook‑associated protein FlgK
	?	NC_002947	4973962 =	44 (0.800)					coding (1642/2043 nt)	flgK	flagellar hook‑associated protein FlgK
*	?	NC_002947	= 4988515	56 (0.950)	6 (0.110)	6/238	NT	11.3%	coding (1244/1335 nt)	PP_4398	MFS transporter
	?	NC_002947	= 4988616	43 (0.790)					coding (1143/1335 nt)	PP_4398	MFS transporter
*	?	NC_002947	= 4990473	58 (0.990)	6 (0.110)	6/244	NT	9.6%	coding (659/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990503	58 (1.040)					coding (629/1242 nt)	PP_4399	glutamine synthetase
*	?	NC_002947	= 5107942	50 (0.850)	3 (0.050)	3/246	NT	5.8%	coding (170/3021 nt)	ydiJ	putative oxidoreductase
	?	NC_002947	= 5107965	50 (0.890)					coding (147/3021 nt)	ydiJ	putative oxidoreductase
*	?	NC_002947	= 5125112	19 (0.320)	4 (0.090)	4/206	NT	16.6%	intergenic (+86/‑96)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5125139	25 (0.530)					intergenic (+113/‑69)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	= 5182288	63 (1.070)	5 (0.090)	5/240	NT	7.3%	intergenic (‑13/‑223)	csbD/PP_4562	stress response protein/hypothetical protein
	?	NC_002947	= 5182340	69 (1.260)					intergenic (‑65/‑171)	csbD/PP_4562	stress response protein/hypothetical protein
*	?	NC_002947	= 5196392	55 (0.930)	8 (0.150)	6/238	NT	12.9%	coding (123/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	= 5196417	57 (1.050)					coding (98/690 nt)	ybgJ	allophanate hydrolase subunit 1
*	?	NC_002947	= 5207694	63 (1.070)	7 (0.130)	6/232	NT	9.8%	intergenic (+32/+82)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 5207745	72 (1.360)					intergenic (+83/+31)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	5211621 =	42 (0.710)	4 (0.070)	4/250	NT	8.7%	coding (329/1638 nt)	PP_4592	metal dependent hydrolase
	?	NC_002947	5211652 =	43 (0.750)					coding (298/1638 nt)	PP_4592	metal dependent hydrolase
*	?	NC_002947	= 5255908	57 (0.970)	3 (0.050)	3/244	NT	5.4%	coding (438/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
	?	NC_002947	= 5255941	51 (0.920)					coding (471/738 nt)	folM	bifunctional dihydrofolate reductase/dihydromonapterin reductase
*	?	NC_002947	= 5256691	49 (0.830)	4 (0.070)	4/248	NT	8.0%	coding (185/342 nt)	PP_5703	type III effector protein HopJ
	?	NC_002947	= 5256717	45 (0.800)					coding (211/342 nt)	PP_5703	type III effector protein HopJ
*	?	NC_002947	= 5273028	43 (0.730)	3 (0.050)	3/244	NT	6.1%	coding (175/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	= 5273084	51 (0.920)					coding (231/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
*	?	NC_002947	= 5283665	47 (0.800)	3 (0.050)	3/242	NT	6.5%	coding (70/1920 nt)	PP_4658	methyl‑accepting chemotaxis protein
	?	NC_002947	= 5283692	42 (0.760)					coding (97/1920 nt)	PP_4658	methyl‑accepting chemotaxis protein
*	?	NC_002947	5288394 =	24 (0.410)	4 (0.090)	4/198	NT	21.4%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	11 (0.240)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	= 5296760	62 (1.050)	3 (0.050)	3/252	NT	5.4%	coding (603/1272 nt)	TpbB	diguanylate cyclase
	?	NC_002947	= 5296804	44 (0.770)					coding (559/1272 nt)	TpbB	diguanylate cyclase
*	?	NC_002947	= 5306320	45 (0.760)	3 (0.060)	3/238	NT	6.7%	coding (932/3483 nt)	recC	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
	?	NC_002947	= 5306376	42 (0.770)					coding (876/3483 nt)	recC	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
*	?	NC_002947	= 5375384	39 (0.660)	4 (0.070)	3/242	NT	9.5%	coding (57/1128 nt)	dnaJ	chaperone protein DnaJ
	?	NC_002947	= 5375412	40 (0.720)					coding (29/1128 nt)	dnaJ	chaperone protein DnaJ
*	?	NC_002947	= 5380510	48 (0.820)	3 (0.050)	3/248	NT	5.8%	coding (92/405 nt)	fur	ferric iron uptake global transcriptional repressor Fur
	?	NC_002947	= 5380557	52 (0.920)					coding (45/405 nt)	fur	ferric iron uptake global transcriptional repressor Fur
*	?	NC_002947	5416755 =	58 (0.990)	5 (0.090)	4/242	NT	8.2%	coding (929/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
	?	NC_002947	5416799 =	57 (1.030)					coding (885/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
*	?	NC_002947	5441488 =	40 (0.680)	3 (0.050)	3/242	NT	7.3%	coding (1096/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
	?	NC_002947	5441541 =	39 (0.710)					coding (1043/1653 nt)	PP_4780	acyl‑CoA dehydrogenase
*	?	NC_002947	= 5447383	37 (0.630)	4 (0.070)	3/240	NT	9.8%	coding (888/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
	?	NC_002947	= 5447413	39 (0.710)					coding (918/1284 nt)	hemL	glutamate‑1‑semialdehyde 2,1‑aminomutase
*	?	NC_002947	5474528 =	49 (0.830)	3 (0.050)	3/244	NT	5.8%	coding (267/1272 nt)	proA	gamma‑glutamyl phosphate reductase
	?	NC_002947	5474579 =	51 (0.920)					coding (216/1272 nt)	proA	gamma‑glutamyl phosphate reductase
*	?	NC_002947	5489812 =	38 (0.650)	3 (0.050)	3/248	NT	7.0%	coding (294/597 nt)	PP_4825	MarC family membrane protein
	?	NC_002947	5489865 =	43 (0.760)					coding (347/597 nt)	PP_4825	MarC family membrane protein
*	?	NC_002947	5492542 =	48 (0.820)	4 (0.070)	4/248	NT	8.5%	coding (1474/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
	?	NC_002947	5492572 =	40 (0.710)					coding (1444/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
*	?	NC_002947	5513242 =	30 (0.510)	5 (0.110)	5/206	NT	20.9%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	14 (0.300)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
*	?	NC_002947	5514378 =	78 (1.330)	4 (0.070)	4/240	NT	5.5%	coding (273/516 nt)	mnaT	L‑amino acid N‑acyltransferase
	?	NC_002947	5514428 =	65 (1.190)					coding (323/516 nt)	mnaT	L‑amino acid N‑acyltransferase
*	?	NC_002947	5534108 =	44 (0.750)	3 (0.050)	3/248	NT	7.0%	coding (367/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	5534150 =	37 (0.650)					coding (325/1137 nt)	PP_4867	BraC‑like branched‑chain amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 5557381	42 (0.710)	3 (0.050)	3/244	NT	6.1%	coding (249/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 5557420	53 (0.950)					coding (210/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer
*	?	NC_002947	5566146 =	53 (0.900)	5 (0.090)	4/242	NT	9.1%	coding (1340/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	5566183 =	50 (0.910)					coding (1303/1899 nt)	mutL	DNA mismatch repair protein MutL
*	?	NC_002947	= 5596413	63 (1.070)	3 (0.050)	3/242	NT	5.3%	intergenic (‑79/‑87)	PP_mr58/PP_4923	TPP regulatory region/outer membrane efflux protein
	?	NC_002947	= 5596446	49 (0.890)					intergenic (‑112/‑54)	PP_mr58/PP_4923	TPP regulatory region/outer membrane efflux protein
*	?	NC_002947	= 5602436	68 (1.160)	5 (0.090)	4/248	NT	6.9%	coding (1046/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5602448	69 (1.220)					coding (1034/5418 nt)	PP_4924	subtilase family serine protease
*	?	NC_002947	5637379 =	47 (0.800)	3 (0.050)	3/250	NT	6.4%	coding (1747/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	5637419 =	42 (0.740)					coding (1787/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	= 5637686	46 (0.780)	3 (0.050)	3/244	NT	6.7%	coding (220/1443 nt)	PP_4949	TldD/PmbA family peptidase
	?	NC_002947	= 5637741	40 (0.720)					coding (275/1443 nt)	PP_4949	TldD/PmbA family peptidase
*	?	NC_002947	5639854 =	48 (0.820)	4 (0.070)	4/246	NT	7.4%	coding (946/1320 nt)	PP_4950	hypothetical protein
	?	NC_002947	5639898 =	55 (0.980)					coding (990/1320 nt)	PP_4950	hypothetical protein
*	?	NC_002947	5644528 =	52 (0.880)	4 (0.070)	4/242	NT	7.6%	intergenic (+9/‑120)	yhiN/PP_4954	FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
	?	NC_002947	5644617 =	48 (0.870)					intergenic (+98/‑31)	yhiN/PP_4954	FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
*	?	NC_002947	= 5669426	52 (0.880)	4 (0.080)	4/230	NT	7.2%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669447	56 (1.070)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	= 5679023	68 (1.160)	5 (0.090)	4/244	NT	7.1%	coding (649/1407 nt)	bioA	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
	?	NC_002947	= 5679038	67 (1.200)					coding (664/1407 nt)	bioA	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
*	?	NC_002947	5680908 =	53 (0.900)	4 (0.070)	4/246	NT	7.5%	coding (375/618 nt)	PP_4986	hemolysin III family channel protein
	?	NC_002947	5680926 =	48 (0.860)					coding (357/618 nt)	PP_4986	hemolysin III family channel protein
*	?	NC_002947	= 5699460	60 (1.020)	4 (0.070)	4/242	NT	6.2%	intergenic (+206/‑63)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5699488	64 (1.160)					intergenic (+234/‑35)	PP_5002/phaA	hypothetical protein/poly(3‑hydroxyalkanoate) polymerase
*	?	NC_002947	5727157 =	56 (0.950)	3 (0.050)	3/244	NT	5.4%	coding (1481/1680 nt)	opgG	glucans biosynthesis protein G
	?	NC_002947	5727201 =	53 (0.950)					coding (1437/1680 nt)	opgG	glucans biosynthesis protein G
*	?	NC_002947	= 5758533	38 (0.650)	5 (0.090)	4/252	NT	11.3%	coding (399/438 nt)	PP_5051	hypothetical protein
	?	NC_002947	= 5758566	41 (0.710)					coding (366/438 nt)	PP_5051	hypothetical protein
*	?	NC_002947	= 5759402	24 (0.410)	4 (0.070)	4/256	NT	14.6%	intergenic (+11/+145)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759496	23 (0.390)					intergenic (+105/+51)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	= 5783559	44 (0.750)	4 (0.070)	4/244	NT	8.0%	coding (2034/3309 nt)	kefA	intermediate mechanosensitive channel protein
	?	NC_002947	= 5783588	51 (0.920)					coding (2063/3309 nt)	kefA	intermediate mechanosensitive channel protein
*	?	NC_002947	= 5797718	55 (0.930)	4 (0.070)	4/244	NT	7.1%	coding (182/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	= 5797772	52 (0.930)					coding (128/4446 nt)	gltB	L‑glutamate synthase subunit alpha
*	?	NC_002947	5816854 =	16 (0.270)	6 (0.120)	6/222	NT	35.5%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816917 =	8 (0.160)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
*	?	NC_002947	5818359 =	50 (0.850)	4 (0.070)	3/240	NT	8.3%	coding (353/687 nt)	PP_5094	PLP binding domain‑containing protein
	?	NC_002947	5818398 =	42 (0.770)					coding (392/687 nt)	PP_5094	PLP binding domain‑containing protein
*	?	NC_002947	5831615 =	59 (1.000)	3 (0.050)	3/240	NT	5.6%	coding (529/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase
	?	NC_002947	5831673 =	46 (0.840)					coding (471/1485 nt)	ftsY	signal recognition particle protein translocation receptor GTPase
*	?	NC_002947	= 5850864	49 (0.830)	3 (0.050)	3/242	NT	6.0%	coding (1569/1842 nt)	ilvD	dihydroxy‑acid dehydratase
	?	NC_002947	= 5850932	48 (0.870)					coding (1637/1842 nt)	ilvD	dihydroxy‑acid dehydratase
*	?	NC_002947	5855296 =	51 (0.870)	4 (0.070)	3/248	NT	8.3%	coding (1316/1392 nt)	tcyP	sodium/cystine symporter
	?	NC_002947	5855345 =	39 (0.690)					coding (1365/1392 nt)	tcyP	sodium/cystine symporter
*	?	NC_002947	5870261 =	31 (0.530)	6 (0.130)	6/200	NT	24.5%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	13 (0.290)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	5876984 =	40 (0.680)	4 (0.080)	4/210	NT	13.0%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.440)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5882284 =	58 (0.990)	3 (0.050)	3/248	NT	5.4%	coding (845/1230 nt)	serA	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
	?	NC_002947	5882314 =	49 (0.870)					coding (875/1230 nt)	serA	bifunctional D‑3‑phosphoglycerate dehydrogenase/alpha‑ketoglutarate reductase
*	?	NC_002947	= 5903769	49 (0.830)	3 (0.060)	3/238	NT	5.9%	intergenic (+25/+82)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903831	51 (0.940)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5907249	64 (1.090)	6 (0.110)	6/240	NT	8.9%	coding (718/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
	?	NC_002947	= 5907291	64 (1.170)					coding (676/1095 nt)	spuE	spermidine/putrescine ABC transporter substrate‑binding protein
*	?	NC_002947	5917105 =	60 (1.020)	7 (0.120)	6/246	NT	12.5%	coding (163/1368 nt)	ygiF	thiamine triphosphatase
	?	NC_002947	5917135 =	41 (0.730)					coding (193/1368 nt)	ygiF	thiamine triphosphatase
*	?	NC_002947	= 5923171	54 (0.920)	3 (0.050)	3/246	NT	5.2%	coding (1260/2874 nt)	gcvP‑II	glycine dehydrogenase
	?	NC_002947	= 5923232	57 (1.020)					coding (1199/2874 nt)	gcvP‑II	glycine dehydrogenase
*	?	NC_002947	5925111 =	63 (1.070)	4 (0.070)	4/246	NT	5.8%	coding (1034/1083 nt)	gcvT‑II	aminomethyltransferase
	?	NC_002947	5925158 =	69 (1.230)					coding (987/1083 nt)	gcvT‑II	aminomethyltransferase
*	?	NC_002947	= 5936201	58 (0.990)	5 (0.090)	4/246	NT	8.2%	coding (263/450 nt)	PP_5205	hypothetical protein
	?	NC_002947	= 5936232	57 (1.020)					coding (294/450 nt)	PP_5205	hypothetical protein
*	?	NC_002947	= 5960794	79 (1.340)	5 (0.090)	5/246	NT	6.0%	intergenic (‑157/‑83)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
	?	NC_002947	= 5960840	82 (1.460)					intergenic (‑203/‑37)	cyaY/PP_5226	frataxin/Lppl family lipoprotein
*	?	NC_002947	6021465 =	51 (0.870)	3 (0.050)	3/246	NT	5.6%	coding (185/354 nt)	PP_5272	hypothetical protein
	?	NC_002947	6021517 =	53 (0.940)					coding (133/354 nt)	PP_5272	hypothetical protein
*	?	NC_002947	= 6032423	38 (0.650)	5 (0.090)	5/246	NT	11.5%	coding (1277/1590 nt)	dppA‑IV	dipeptide transport protein
	?	NC_002947	= 6032456	41 (0.730)					coding (1310/1590 nt)	dppA‑IV	dipeptide transport protein
*	?	NC_002947	6055813 =	58 (0.990)	3 (0.060)	3/234	NT	5.3%	intergenic (+34/‑61)	tonB/oxyR	TonB energy transducing system subunit TonB/oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	6055876 =	55 (1.030)					coding (3/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
*	?	NC_002947	6071622 =	60 (1.020)	3 (0.050)	3/246	NT	5.5%	intergenic (‑45/+57)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein
	?	NC_002947	6071671 =	46 (0.820)					intergenic (‑94/+8)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein