breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	6,429	Δ1 bp	7.0%	intergenic (‑47/+42)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	6,433:1	+T	7.4%	intergenic (‑51/+38)	trmE ← / ← oxaA	GTPase/membrane protein insertase
RA	20,298	T→C	6.0%	L34P (CTG→CCG)	PP_0016 →	hypothetical protein
RA	23,833	T→A	7.1%	F220I (TTT→ATT)	PP_0018 →	hypothetical protein
RA	39,564	C→T	7.5%	P98L (CCA→CTA)	PP_0036 →	transcriptional regulator
RA	45,774	T→A	6.7%	K93* (AAG→TAG)	PP_0042 ←	hypothetical protein
RA	58,747	T→A	8.9%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	8.5%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	65,820	G→A	6.4%	G293D (GGT→GAT)	betA‑I →	choline dehydrogenase
RA	103,818	A→T	7.4%	intergenic (+116/‑24)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,819	T→A	7.2%	intergenic (+117/‑23)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,820	T→A	7.0%	intergenic (+118/‑22)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,821	A→T	6.9%	intergenic (+119/‑21)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	104,876	G→C	7.0%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	146,599	G→T	6.2%	L119L (CTG→CTT)	PP_0138 →	membrane protein
RA	146,600	A→C	6.3%	K120Q (AAG→CAG)	PP_0138 →	membrane protein
RA	162,268	C→T	6.1%	intergenic (‑302/+72)	PP_0153 ← / ← scpC	hypothetical protein/propionyl‑CoA:succinate CoA transferase
RA	181,805	T→C	12.2%	intergenic (+19/‑87)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,811	C→T	10.9%	intergenic (+25/‑81)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,812	A→G	10.9%	intergenic (+26/‑80)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	181,818	G→A	10.3%	intergenic (+32/‑74)	PP_r01 → / → PP_5SB	5S ribosomal RNA/5S ribosomal RNA
RA	182,035	A→T	6.3%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	185,090	C→T	8.0%	D175N (GAC→AAC)	PP_0161 ←	putative transmembrane sensor
RA	195,559	C→A	26.3%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	41.3%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	24.2%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	26.8%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	32.8%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	27.1%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	7.4%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	12.8%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	10.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	5.6%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	12.9%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	22.0%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	23.8%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	16.0%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	13.3%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,367	G→C	6.1%	V1291V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	206,064	T→A	7.0%	L3857Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	213,354	T→A	9.6%	L6287Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	222,352	A→T	6.6%	E69D (GAA→GAT)	PP_0170 →	ABC transporter substrate‑binding protein
RA	233,872	T→G	8.9%	intergenic (+60/+3)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,873	G→C	8.9%	intergenic (+61/+2)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	233,874	C→A	8.8%	intergenic (+62/+1)	PP_0180 → / ← PP_0181	cytochrome c family protein/hypothetical protein
RA	235,742	T→C	5.9%	M365V (ATG→GTG)	argH ←	argininosuccinate lyase
RA	266,851	G→A	8.7%	V187V (GTG→GTA)	PP_0215 →	two‑component system response regulator
RA	274,145	A→T	6.8%	L142Q (CTG→CAG)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	274,148	A→T	6.8%	L141Q (CTG→CAG)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	274,151	A→T	6.8%	L140Q (CTG→CAG)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	274,154	A→T	9.8%	L139Q (CTG→CAG)	PP_0221 ←	methionine ABC transporter substrate‑binding protein
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,586	T→A	8.5%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	290,240	C→T	10.2%	A53A (GCC→GCT)	PP_0235 →	peroxidase
RA	294,408	C→G	6.4%	T202T (ACC→ACG)	ssuC →	aliphatic sulfonatesABC transporter permease
RA	294,409	A→G	6.0%	I203V (ATT→GTT)	ssuC →	aliphatic sulfonatesABC transporter permease
RA	306,288	T→A	8.0%	L68Q (CTG→CAG)	hslO →	molecular chaperone HslO
RA	306,291	T→A	7.4%	I69N (ATT→AAT)	hslO →	molecular chaperone HslO
RA	306,378	A→T	8.9%	E98V (GAA→GTA)	hslO →	molecular chaperone HslO
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	322,133	G→A	12.5%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	12.5%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	341,654	C→T	7.1%	V57V (GTC→GTT)	gabP‑I →	gamma‑aminobutyrate permease
RA	344,032	A→G	10.5%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	9.2%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	9.2%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	353,790	C→G	6.3%	R180R (CGG→CGC)	cbcV ←	choline/betaine/carnitine ABC transporter ATP binding protein
RA	353,803	A→G	6.3%	V176A (GTG→GCG) ‡	cbcV ←	choline/betaine/carnitine ABC transporter ATP binding protein
RA	353,804	C→G	6.3%	V176L (GTG→CTG) ‡	cbcV ←	choline/betaine/carnitine ABC transporter ATP binding protein
RA	354,547	T→C	8.9%	S209G (AGC→GGC)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,548	T→A	8.9%	P208P (CCA→CCT)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	367,362	C→A	16.3%	intergenic (‑48/+26)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	367,367	T→G	16.0%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	370,911	C→T	6.9%	P131L (CCT→CTT)	dgcA →	dimethylglycine dehydrogenase subunit
RA	392,293	T→C	7.4%	V856A (GTA→GCA)	soxA →	sarcosine oxidase subunit alpha
RA	392,295	C→G	7.6%	L857V (CTG→GTG) ‡	soxA →	sarcosine oxidase subunit alpha
RA	392,297	G→A	7.8%	L857L (CTG→CTA) ‡	soxA →	sarcosine oxidase subunit alpha
RA	410,220	C→A	5.7%	M148I (ATG→ATT) ‡	aceE ←	pyruvate dehydrogenase E1 component
RA	410,221	A→T	6.6%	M148K (ATG→AAG) ‡	aceE ←	pyruvate dehydrogenase E1 component
RA	410,222	T→G	5.6%	M148L (ATG→CTG) ‡	aceE ←	pyruvate dehydrogenase E1 component
RA	417,372	C→T	10.8%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,375	A→G	11.6%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	418,295	C→G	6.9%	L26L (CTC→CTG)	PP_0345 →	heptose kinase WapP
RA	418,296	C→G	6.9%	Q27E (CAG→GAG)	PP_0345 →	heptose kinase WapP
RA	431,362	C→T	8.0%	V318I (GTT→ATT)	PP_0354 ←	CBS domain‑containing protein
RA	432,503	G→A	13.3%	R33Q (CGG→CAG)	PP_0355 →	two‑component system response regulator
RA	463,678	G→A	7.8%	F473F (TTC→TTT)	davB ←	lysine 2‑monooxygenase
RA	467,098	A→G	9.3%	intergenic (‑31/+22)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	467,101	C→T	7.0%	intergenic (‑34/+19)	PP_5445 ← / ← PP_t71	hypothetical protein/tRNA‑Met
RA	481,213	A→G	11.7%	L383P (CTG→CCG)	PP_0396 ←	hypothetical protein
RA	483,678	A→G	8.1%	L254P (CTG→CCG)	yeaG ←	protein kinase
RA	487,675	G→T	6.2%	N209K (AAC→AAA)	pdxA ←	4‑hydroxythreonine‑4‑phosphate dehydrogenase
RA	494,056	T→A	5.7%	S164T (TCC→ACC)	PP_0406 →	nucleotidyltransferase family protein
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	504,094	C→G	6.1%	G49G (GGC→GGG)	rpe →	ribulose‑5‑phosphate 3‑epimerase
RA	519,673	G→A	6.7%	intergenic (+27/‑73)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,674	T→C	6.6%	intergenic (+28/‑72)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,675	C→G	6.3%	intergenic (+29/‑71)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,676	G→A	6.7%	intergenic (+30/‑70)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,677	T→C	6.6%	intergenic (+31/‑69)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	535,818	G→T	7.0%	E85* (GAA→TAA) ‡	rplA →	50S ribosomal protein L1
RA	535,819	A→C	6.1%	E85A (GAA→GCA) ‡	rplA →	50S ribosomal protein L1
RA	541,440	C→T	8.5%	P1273L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	548,908	G→T	7.0%	L586L (CTG→CTT)	fusA →	elongation factor G 1
RA	548,909	A→C	7.0%	K587Q (AAG→CAG)	fusA →	elongation factor G 1
RA	551,583	A→G	11.3%	V188V (GTA→GTG)	rplC →	50S ribosomal protein L3
RA	556,986	A→C	10.0%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	10.2%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	556,997	A→G	10.8%	T16A (ACG→GCG)	rpsN →	30S ribosomal protein S14
RA	557,065	A→T	7.9%	P38P (CCA→CCT)	rpsN →	30S ribosomal protein S14
RA	564,377:1	+A	12.8%	intergenic (+29/‑144)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	564,382	Δ1 bp	12.8%	intergenic (+34/‑139)	rplQ → / → katA	50S ribosomal protein L17/catalase
RA	571,477	A→G	8.3%	Q150R (CAG→CGG)	ssb →	single‑stranded DNA‑binding protein
RA	571,617	G→A	9.1%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,618	T→C	9.3%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	587,076	C→G	10.0%	P43R (CCG→CGG)	PP_0497 →	Cro/CI family transcriptional regulator
RA	591,082	T→C	6.8%	V110A (GTG→GCG)	PP_0501 →	NAD‑dependent epimerase/dehydratase family protein
RA	600,940	C→T	100%	V97V (GTC→GTT)	ribD →	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase
RA	614,606	A→T	8.6%	I214N (ATT→AAT)	ispA ←	farnesyl diphosphate synthase
RA	668,263	G→T	7.8%	F87L (TTC→TTA) ‡	PP_0571 ←	membrane protein
RA	668,264	A→C	7.9%	F87C (TTC→TGC) ‡	PP_0571 ←	membrane protein
RA	680,070	C→T	100%	R319R (CGC→CGT)	PP_0582 →	thiolase family protein
RA	680,671	C→T	10.3%	P64L (CCG→CTG)	PP_0583 →	AraC family transcriptional regulator
RA	680,674	A→G	10.5%	Q65R (CAG→CGG)	PP_0583 →	AraC family transcriptional regulator
RA	699,722	A→G	60.4%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	12.7%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	12.8%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	12.9%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	705,949	A→G	6.5%	S476G (AGT→GGT)	PP_0599 →	paraquat‑inducible protein B
RA	714,966	T→A	6.0%	intergenic (+32/+45)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,967	T→A	5.5%	intergenic (+33/+44)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,968	T→A	5.5%	intergenic (+34/+43)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	714,976	T→C	7.1%	intergenic (+42/+35)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	717,758	T→A	8.9%	G142G (GGT→GGA)	thiO →	FAD‑dependent glycine/D‑amino acid oxidase
RA	720,921	G→C	8.5%	T92S (ACC→AGC) ‡	PP_0614 ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	720,922	T→C	8.3%	T92A (ACC→GCC) ‡	PP_0614 ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	720,926	G→C	8.9%	I90M (ATC→ATG)	PP_0614 ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	720,931	G→C	8.7%	P89A (CCC→GCC)	PP_0614 ←	bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase
RA	733,645	A→T	8.5%	intergenic (+19/‑28)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	733,647	A→T	8.6%	intergenic (+21/‑26)	PP_t09 → / → PP_t10	tRNA‑Lys/tRNA‑Pro
RA	735,625	C→T	10.9%	intergenic (‑51/+82)	PP_0627 ← / ← PP_0628	hypothetical protein/hypothetical protein
RA	747,612:1	+G	100%	intergenic (‑739/‑55)	PP_0638 ← / → PP_5448	transposase/hypothetical protein
RA	766,138	A→G	9.1%	I245V (ATC→GTC)	PP_0658 →	homocysteine S‑methyltransferase family protein
RA	767,020	T→A	6.8%	V171E (GTG→GAG)	metB →	cystathionine gamma‑synthase
RA	788,581	C→A	6.1%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	6.1%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	6.1%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	6.4%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,596	T→C	6.9%	intergenic (+46/‑167)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	790,154	A→T	11.8%	intergenic (+42/+18)	gdhA → / ← PP_0676	NADP‑dependent glutamate dehydrogenase/transcription elongation factor
RA	790,155	A→T	11.9%	intergenic (+43/+17)	gdhA → / ← PP_0676	NADP‑dependent glutamate dehydrogenase/transcription elongation factor
RA	790,156	A→T	12.5%	intergenic (+44/+16)	gdhA → / ← PP_0676	NADP‑dependent glutamate dehydrogenase/transcription elongation factor
RA	802,770	T→C	11.1%	intergenic (+28/‑58)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,771	C→A	9.5%	intergenic (+29/‑57)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,772	T→G	11.0%	intergenic (+30/‑56)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	802,773	G→A	9.9%	intergenic (+31/‑55)	obg → / → proB	GTPase Obg/glutamate 5‑kinase
RA	826,700	G→C	13.9%	intergenic (‑102/‑110)	PP_0710 ← / → ycaC‑I	hypothetical protein/putative hydrolase
RA	827,124	G→T	6.1%	K105N (AAG→AAT)	ycaC‑I →	putative hydrolase
RA	827,125	A→C	6.2%	K106Q (AAG→CAG)	ycaC‑I →	putative hydrolase
RA	827,136	G→T	5.8%	L109L (CTG→CTT)	ycaC‑I →	putative hydrolase
RA	827,137	A→C	5.7%	I110L (ATT→CTT)	ycaC‑I →	putative hydrolase
RA	847,680	T→C	9.5%	N297S (AAC→AGC)	PP_0730 ←	hypothetical protein
RA	863,898	T→A	12.2%	intergenic (+15/+21)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,899	T→A	10.4%	intergenic (+16/+20)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	863,900	T→A	11.1%	intergenic (+17/+19)	hemH → / ← uraA	ferrochelatase/uracil permease
RA	902,619	A→C	7.0%	intergenic (+45/+31)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	902,622	C→G	7.3%	intergenic (+48/+28)	trxB → / ← nadC	thioredoxin reductase/quinolinate phosphoribosyltransferase
RA	955,149	A→G	57.2%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	50.0%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	44.5%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	44.4%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	44.4%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	961,035	G→C	6.2%	Q116E (CAG→GAG)	selU ←	tRNA 2‑selenouridine synthase
RA	961,037	A→G	6.2%	I115T (ATT→ACT)	selU ←	tRNA 2‑selenouridine synthase
RA	965,828	C→T	100%	A297T (GCC→ACC)	PP_0828 ←	membrane protein
RA	977,870	G→A	9.3%	intergenic (+36/‑144)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	995,254	T→C	8.3%	D781G (GAT→GGT)	PP_0860 ←	sulfite reductase flavoprotein subunit
RA	1,013,228	A→T	25.9%	intergenic (+56/+75)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,234	C→A	28.0%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	24.1%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	32.1%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	32.2%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	29.6%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	36.5%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,255	A→T	33.4%	intergenic (+83/+48)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,027,996	G→C	6.4%	A248A (GCC→GCG)	dppA‑III ←	dipeptide ABC transporter substrate‑binding protein
RA	1,027,999	G→C	6.3%	D247E (GAC→GAG)	dppA‑III ←	dipeptide ABC transporter substrate‑binding protein
RA	1,028,172	G→A	6.9%	Q190* (CAG→TAG)	dppA‑III ←	dipeptide ABC transporter substrate‑binding protein
RA	1,033,329	T→C	88.7%	L97P (CTG→CCG)	PP_0890 →	hypothetical protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,090,029	C→A	5.8%	P297Q (CCG→CAG)	fumC‑I →	class 2 fumarate hydratase
RA	1,090,032	T→G	7.0%	L298R (CTG→CGG)	fumC‑I →	class 2 fumarate hydratase
RA	1,099,753	T→C	100%	intergenic (‑188/‑61)	kdsD ← / → mlaF	D‑arabinose 5‑phosphate isomerase/ABC transporter ATP‑binding protein
RA	1,109,246	C→T	7.3%	A3T (GCA→ACA)	PP_0968 ←	hypothetical protein
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,138	G→T	9.8%	intergenic (‑193/+111)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,139	C→G	9.8%	intergenic (‑194/+110)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,130,140	A→C	10.0%	intergenic (‑195/+109)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,169,305	T→C	8.9%	I369V (ATC→GTC)	leuA ←	2‑isopropylmalate synthase
RA	1,169,306	G→A	7.4%	D368D (GAC→GAT)	leuA ←	2‑isopropylmalate synthase
RA	1,172,293	C→T	100%	A254T (GCT→ACT)	xseA ←	exodeoxyribonuclease 7 large subunit
RA	1,178,751	T→A	11.6%	intergenic (+56/+38)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,752	G→T	11.5%	intergenic (+57/+37)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,753	A→C	11.6%	intergenic (+58/+36)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,178,754	T→A	11.5%	intergenic (+59/+35)	guaA → / ← PP_1033	glutamine‑hydrolyzing GMP synthase/sulfatase domain‑containing protein
RA	1,184,588	G→C	22.8%	intergenic (‑204/‑208)	mltF ← / → purL	membrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
RA	1,187,241	C→T	8.1%	Q816* (CAA→TAA)	purL →	phosphoribosylformylglycinamidine synthase
RA	1,191,514	A→G	10.1%	intergenic (+70/+60)	xcpX → / ← upxB	type II secretion system protein K/phosphatase
RA	1,191,519	G→A	6.9%	intergenic (+75/+55)	xcpX → / ← upxB	type II secretion system protein K/phosphatase
RA	1,200,558	C→T	7.8%	L72L (CTG→TTG)	gspG →	protein secretion protein
RA	1,213,540	G→A	6.2%	A1140V (GCG→GTG)	PP_1061 ←	ATP‑dependent DNA helicase
RA	1,224,464	T→A	6.1%	T72S (ACC→TCC)	gltK ←	glutamate/aspartate ABC transporter permease
RA	1,225,473	G→T	11.4%	intergenic (‑49/+97)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,480	A→C	10.6%	intergenic (‑56/+90)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,481	A→T	10.3%	intergenic (‑57/+89)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,225,482	G→T	10.3%	intergenic (‑58/+88)	gltJ ← / ← gltI	glutamate/aspartate ABC transporter permease/glutamate/aspartate ABC transporter substrate‑binding protein
RA	1,226,710	T→A	10.4%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,236,968	G→A	9.4%	intergenic (+7/+31)	ybaK → / ← PP_1078	Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein
RA	1,236,976	C→T	9.6%	intergenic (+15/+23)	ybaK → / ← PP_1078	Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein
RA	1,236,977	A→T	9.6%	intergenic (+16/+22)	ybaK → / ← PP_1078	Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein
RA	1,236,978	A→G	9.6%	intergenic (+17/+21)	ybaK → / ← PP_1078	Cys‑tRNAPro deacylase/ABC transporter ATP‑binding protein
RA	1,248,213	C→A	8.1%	intergenic (+26/+42)	argG → / ← PP_1089	argininosuccinate synthase/hypothetical protein
RA	1,253,701	C→G	9.5%	L600F (TTG→TTC)	metG ←	methionine‑‑tRNA ligase
RA	1,256,882	G→T	7.6%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,883	A→C	7.0%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,884	A→T	7.0%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,269,386	C→G	6.4%	A16P (GCA→CCA)	PP_1109 ←	GntR family transcriptional regulator
RA	1,269,389	C→G	6.5%	D15H (GAT→CAT)	PP_1109 ←	GntR family transcriptional regulator
RA	1,273,533	A→C	7.2%	H14Q (CAT→CAG)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,537	T→C	6.0%	N13S (AAC→AGC)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,543	T→C	6.1%	D11G (GAC→GGC)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,273,546	G→T	8.2%	P10H (CCT→CAT)	PP_1114 ←	SEC‑C domain‑containing protein
RA	1,275,098:1	+G	100%	intergenic (‑295/+17)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,283,117	A→G	7.5%	F98S (TTC→TCC)	PP_1119 ←	hypothetical protein
RA	1,293,918	T→C	7.9%	L156P (CTG→CCG)	pdxH →	pyridoxine/pyridoxamine 5'‑phosphate oxidase
RA	1,307,218	A→G	6.2%	Y134H (TAC→CAC)	livK ←	branched‑chain amino acids ABC transporter substrate‑binding protein
RA	1,313,631	G→C	5.2%	A342A (GCC→GCG)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,313,636	G→C	5.2%	R341G (CGC→GGC)	rapA ←	RNA polymerase‑associated protein RapA
RA	1,327,121	C→T	51.0%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,335,441	T→C	9.4%	L206L (TTA→CTA)	PP_1160 →	asparaginase family protein
RA	1,336,732	C→T	9.1%	V35V (GTC→GTT)	gstA →	glutathione S‑transferase GstA
RA	1,356,405	G→C	13.1%	G94A (GGC→GCC)	PP_1181 →	two‑component system response regulator
RA	1,368,196	A→G	8.1%	intergenic (+25/‑158)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,197	G→T	7.8%	intergenic (+26/‑157)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,199	G→C	7.7%	intergenic (+28/‑155)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,201	A→C	8.8%	intergenic (+30/‑153)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,202	C→T	7.8%	intergenic (+31/‑152)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,376,321	A→T	8.3%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	8.3%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,323	A→T	8.3%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,383,070	T→G	5.7%	E77D (GAA→GAC)	PP_1204 ←	lipoprotein
RA	1,383,078	C→A	6.1%	V75F (GTC→TTC)	PP_1204 ←	lipoprotein
RA	1,387,895	G→A	5.7%	intergenic (+121/+1)	PP_1208 → / ← PP_1209	SlyX family protein/cold‑shock protein
RA	1,387,896	T→C	5.7%	*198W (TGA→TGG)	PP_1209 ←	cold‑shock protein
RA	1,403,590	G→A	17.8%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	17.8%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,407,796	G→A	6.6%	V83V (GTG→GTA)	PP_1230 →	hypothetical protein
RA	1,414,211	G→A	9.5%	S86S (AGC→AGT)	PP_1236 ←	glycine cleavage system transcriptional repressor
RA	1,416,739	A→T	7.8%	D370V (GAC→GTC)	PP_1238 →	lipoprotein
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,436,556	C→T	6.2%	A170T (GCC→ACC)	PP_1257 ←	1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
RA	1,443,053	T→A	10.3%	T4S (ACC→TCC)	ghrB ←	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase
RA	1,446,831	C→T	11.1%	A310V (GCG→GTG)	PP_1264 →	fusaric acid resistance protein
RA	1,458,117	T→G	8.7%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	8.5%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	10.5%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,463,417:1	+A	8.5%	coding (765/1116 nt)	algL ←	alginate lyase
RA	1,463,424	Δ1 bp	8.8%	coding (758/1116 nt)	algL ←	alginate lyase
RA	1,465,581	C→T	100%	A13T (GCC→ACC)	algX ←	alginate biosynthesis protein AlgX
RA	1,469,808	A→G	5.6%	V112A (GTG→GCG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,811	A→T	5.7%	L111Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,469,814	A→T	5.4%	L110Q (CTG→CAG)	algK ←	alginate biosynthesis protein AlgK
RA	1,489,370	A→G	6.1%	intergenic (+169/‑34)	ybgI → / → cysD	metal‑binding hydrolase/oxidase/sulfate adenylyltransferase subunit 2
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,501,401	T→C	6.4%	E103G (GAA→GGA)	PP_1313 ←	AraC family transcriptional regulator
RA	1,504,067	T→A	11.5%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	11.5%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,923	A→G	17.8%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	19.1%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	20.8%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	20.8%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,517,667	C→T	7.8%	T286I (ACC→ATC)	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,520,412	T→C	8.3%	L251P (CTG→CCG)	mraY →	phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase
RA	1,535,380	C→G	6.2%	A130G (GCG→GGG) ‡	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,535,381	G→C	6.1%	A130A (GCG→GCC) ‡	argJ →	glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,541,275	C→T	5.8%	A84T (GCC→ACC)	panE ←	2‑dehydropantoate 2‑reductase
RA	1,543,060	A→G	10.2%	A280A (GCA→GCG)	PP_1353 →	membrane protein
RA	1,545,072	T→C	10.8%	D344G (GAC→GGC)	ampG ←	muropeptide permease AmpG
RA	1,549,895	A→T	8.0%	I99F (ATC→TTC)	groL →	chaperonin GroEL
RA	1,549,906	A→T	6.4%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,555,061	T→C	12.5%	L378P (CTG→CCG)	sbcB →	exodeoxyribonuclease I
RA	1,555,064	A→T	11.1%	E379V (GAA→GTA) ‡	sbcB →	exodeoxyribonuclease I
RA	1,555,065	A→T	11.1%	E379D (GAA→GAT) ‡	sbcB →	exodeoxyribonuclease I
RA	1,555,068	G→A	11.8%	P380P (CCG→CCA)	sbcB →	exodeoxyribonuclease I
RA	1,567,259	A→T	8.9%	intergenic (+63/‑258)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,570,332	C→T	89.6%	G381G (GGC→GGT)	pcaF‑I →	beta‑ketoadipyl‑CoA thiolase
RA	1,572,248	T→C	8.8%	L124L (TTG→CTG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,249	T→A	8.8%	L124* (TTG→TAG) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,572,250	G→A	8.9%	L124L (TTG→TTA) ‡	pcaB →	3‑carboxy‑cis,cis‑muconate cycloisomerase
RA	1,576,018	G→A	9.1%	P155S (CCG→TCG)	galP‑II ←	porin‑like protein
RA	1,576,756	G→C	7.7%	intergenic (‑276/+37)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,757	A→T	7.7%	intergenic (‑277/+36)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,761	G→C	7.7%	intergenic (‑281/+32)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,591,131	C→G	6.7%	E255Q (GAG→CAG)	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,135	C→G	6.5%	L253L (CTG→CTC)	PP_1395 ←	AraC family transcriptional regulator
RA	1,591,982	C→A	14.2%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	14.3%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,597,097	G→C	7.4%	V555V (GTC→GTG)	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,828	A→G	12.2%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,831	C→G	12.8%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,832	T→C	12.7%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,833	G→A	12.2%	intergenic (‑72/+59)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,834	C→G	12.3%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,837	C→T	12.2%	intergenic (‑76/+55)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,602,002	T→A	6.2%	intergenic (+15/‑152)	PP_1404 → / → PP_5469	hypothetical protein/SAM‑dependent methyltransferase
RA	1,606,408	A→T	7.7%	intergenic (‑158/+53)	PP_1407 ← / ← PP_t64	sulfate transporter/tRNA‑Gly
RA	1,611,208	C→G	8.7%	E290D (GAG→GAC)	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,611,211	C→T	8.5%	W289* (TGG→TGA) ‡	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,611,212	C→G	8.5%	W289S (TGG→TCG) ‡	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,611,213	A→G	8.3%	W289R (TGG→CGG) ‡	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,611,216	C→G	8.3%	V288L (GTC→CTC)	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,611,222	G→C	7.5%	H286D (CAT→GAT)	PP_1412 ←	3‑hydroxyisobutyryl‑CoA hydrolase
RA	1,631,093	T→C	10.6%	intergenic (+27/‑154)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,094	T→G	10.6%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,095	C→A	8.6%	intergenic (+29/‑152)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,096	G→A	10.4%	intergenic (+30/‑151)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,637,315	T→C	8.3%	intergenic (+24/+42)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,325	A→T	11.6%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	11.2%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,642,271	G→C	9.8%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	7.8%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	8.1%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	8.1%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	8.1%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,292	T→C	6.5%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,659,042	A→G	7.1%	V51A (GTG→GCG)	PP_1451 ←	hypothetical protein
RA	1,661,637	G→A	11.3%	S103S (TCG→TCA)	PP_1456 →	membrane protein
RA	1,668,450	T→A	6.1%	intergenic (+75/‑107)	ffh → / → rpsP	signal recognition particle GTPase subunit/30S ribosomal protein S16
RA	1,670,221	C→T	75.0%	intergenic (+37/‑6)	trmD → / → rplS	tRNA (guanosine(37)‑N1)‑methyltransferase TrmD/50S ribosomal protein L19
RA	1,691,772	T→C	12.3%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	12.3%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	15.5%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	14.3%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	12.0%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,797	G→A	11.8%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,699,942	G→A	10.5%	D210N (GAT→AAT)	PP_1494 →	GGDEF domain‑containing response regulator
RA	1,703,248	A→G	27.3%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	24.9%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	23.1%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,712,542	G→T	7.6%	Q92H (CAG→CAT)	adk →	adenylate kinase
RA	1,712,951	T→A	9.4%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	8.1%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,715,647	T→C	7.8%	V198A (GTG→GCG)	PP_1510 →	carboxyvinyl‑carboxyphosphonate phosphorylmutase
RA	1,726,485	A→T	7.4%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,488	A→T	7.8%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,731,528	G→C	10.7%	P781R (CCG→CGG)	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,731,531	G→A	8.9%	T780M (ACG→ATG) ‡	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,731,532	T→C	9.0%	T780A (ACG→GCG) ‡	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,731,535	G→C	11.0%	R779G (CGC→GGC)	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,738,373	T→G	8.2%	K274Q (AAG→CAG)	PP_1532 ←	putative Phage integrase
RA	1,738,377	C→A	8.4%	L272L (CTG→CTT)	PP_1532 ←	putative Phage integrase
RA	1,750,765	A→T	8.9%	K42* (AAG→TAG) ‡	PP_1551 →	replication protein O
RA	1,750,766	A→T	9.1%	K42M (AAG→ATG) ‡	PP_1551 →	replication protein O
RA	1,780,712	T→G	8.3%	E211A (GAG→GCG) ‡	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,713	C→A	8.3%	E211* (GAG→TAG) ‡	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,022	T→A	9.6%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	8.1%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	8.5%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,794,994	G→A	9.5%	G738R (GGG→AGG)	bamA‑I →	outer membrane protein assembly factor
RA	1,817,333	G→A	9.1%	A159A (GCG→GCA)	pcm →	protein‑L‑isoaspartate O‑methyltransferase
RA	1,819,671	G→T	6.1%	E306* (GAA→TAA) ‡	rpoS →	RNA polymerase sigma S factor
RA	1,819,672	A→C	6.3%	E306A (GAA→GCA) ‡	rpoS →	RNA polymerase sigma S factor
RA	1,823,180	C→T	100%	D692N (GAC→AAC)	mutS ←	DNA mismatch repair protein MutS
RA	1,845,783	T→C	8.3%	L25P (CTC→CCC)	pfeS‑II →	histidine kinase
RA	1,845,787	T→G	10.0%	S26R (AGT→AGG)	pfeS‑II →	histidine kinase
RA	1,845,792	C→A	8.5%	T28N (ACC→AAC)	pfeS‑II →	histidine kinase
RA	1,845,796	G→A	7.5%	W29* (TGG→TGA)	pfeS‑II →	histidine kinase
RA	1,859,108	C→G	8.6%	intergenic (+28/+73)	PP_1661 → / ← PP_1662	dehydrogenase/hypothetical protein
RA	1,897,203	G→T	6.6%	intergenic (‑56/+88)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,207	T→A	6.9%	intergenic (‑60/+84)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,897,211	A→C	6.4%	intergenic (‑64/+80)	PP_mr24 ← / ← rdgC	mini‑ykkC regulatory region/recombination‑associated protein RdgC
RA	1,901,761	A→T	6.3%	D771V (GAC→GTC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,902,226	G→C	6.5%	R926P (CGC→CCC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,905,819	G→T	7.0%	E692* (GAG→TAG) ‡	nirB →	nitrite reductase large subunit
RA	1,905,820	A→C	7.0%	E692A (GAG→GCG) ‡	nirB →	nitrite reductase large subunit
RA	1,906,189	T→C	6.2%	F815S (TTT→TCT)	nirB →	nitrite reductase large subunit
RA	1,911,553	G→C	7.4%	L149L (CTG→CTC)	PP_1711 →	AraC family transcriptional regulator
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,939,120	A→C	6.4%	intergenic (‑65/‑114)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,939,121	G→T	6.4%	intergenic (‑66/‑113)	PP_1738 ← / → PP_1739	hypothetical protein/membrane protein
RA	1,942,105	T→A	6.8%	V216E (GTA→GAA)	betX →	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
RA	1,944,530	T→C	6.4%	intergenic (+31/+231)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,944,533	T→G	6.3%	intergenic (+34/+228)	actP‑I → / ← PP_1744	acetate permease/hypothetical protein
RA	1,955,209	T→A	9.5%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,210	T→A	9.8%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,969,232	C→T	8.6%	V96V (GTG→GTA)	ubiG ←	ubiquinone biosynthesis O‑methyltransferase
RA	1,980,991	A→G	6.2%	N554S (AAC→AGC)	rpsA →	30S ribosomal protein S1
RA	1,981,565	T→C	6.9%	S69P (TCG→CCG)	ihfB →	integration host factor subunit beta
RA	1,993,602	G→T	12.7%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	12.7%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	12.5%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	2,037,575	A→T	6.7%	intergenic (+169/+30)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,576	T→A	6.6%	intergenic (+170/+29)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,037,577	A→T	6.6%	intergenic (+171/+28)	PP_1810 → / ← PP_5478	hypothetical protein/hypothetical protein
RA	2,054,127	T→G	11.4%	S167R (AGC→CGC)	PP_1829 ←	alpha/beta family hydrolase
RA	2,057,905	A→G	83.2%	intergenic (+121/+7)	PP_1832 → / ← PP_1833	oxidase/hypothetical protein
RA	2,064,215	C→T	6.0%	M261I (ATG→ATA)	PP_1841 ←	cytochrome c family protein
RA	2,073,373	A→C	13.1%	L12R (CTG→CGG)	PP_1847 ←	TonB‑dependent ferric siderophore receptor
RA	2,081,112	G→T	6.2%	intergenic (+30/+85)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,114	A→G	6.2%	intergenic (+32/+83)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,081,115	A→C	7.7%	intergenic (+33/+82)	efp → / ← ohr	elongation factor P/organic hydroperoxide resistance protein
RA	2,102,999	C→G	11.9%	noncoding (35/76 nt)	PP_t23 →	tRNA‑Gly
RA	2,104,697	A→G	12.7%	F63L (TTC→CTC)	PP_1879 ←	hypothetical protein
RA	2,104,698	C→T	12.9%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein
RA	2,147,208	T→G	13.6%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,209	T→C	13.5%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,210	G→A	13.7%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,211	C→A	13.6%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,171,167	C→T	9.5%	T170M (ACG→ATG)	PP_5484 →	hypothetical protein
RA	2,172,573:1	+C	100%	coding (931/1083 nt)	PP_1925 ←	monooxygenase
RA	2,177,884	C→T	6.4%	L40L (CTC→CTT)	PP_1931 →	hypothetical protein
RA	2,179,314	T→A	9.9%	intergenic (+113/+155)	PP_1931 → / ← PP_5486	hypothetical protein/hypothetical protein
RA	2,192,436:1	+C	100%	intergenic (+45/‑159)	PP_1937 → / → PP_1938	helicase/hypothetical protein
RA	2,213,225	T→A	8.2%	V17V (GTT→GTA)	PP_1956 →	hypothetical protein
RA	2,213,229	G→C	8.1%	G19R (GGA→CGA) ‡	PP_1956 →	hypothetical protein
RA	2,213,230	G→C	8.0%	G19A (GGA→GCA) ‡	PP_1956 →	hypothetical protein
RA	2,224,391	A→C	7.8%	I52M (ATT→ATG)	PP_1962 ←	site‑specific recombinase
RA	2,224,396	T→A	8.1%	N51Y (AAC→TAC)	PP_1962 ←	site‑specific recombinase
RA	2,240,327	C→T	7.3%	L186L (CTG→TTG)	gltX →	glutamate‑‑tRNA ligase
RA	2,249,988	A→T	6.9%	L184Q (CTG→CAG)	PP_1984 ←	LysR family transcriptional regulator
RA	2,269,250	G→A	5.2%	G18D (GGT→GAT)	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,270,150	C→T	45.2%	A318V (GCA→GTA)	metZ →	O‑succinylhomoserine sulfhydrylase
RA	2,271,666	C→T	7.9%	intergenic (+50/‑50)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,271,667	A→G	7.9%	intergenic (+51/‑49)	PP_t32 → / → PP_t33	tRNA‑Asp/tRNA‑Asp
RA	2,273,062	C→G	11.8%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	11.9%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	12.4%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	8.0%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,282,770	T→G	20.6%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	21.4%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	21.4%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	21.1%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,812	C→A	10.9%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,819	G→A	10.1%	intergenic (‑211/+18)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,287,681	T→A	5.7%	Y270N (TAC→AAC)	PP_2016 →	hypothetical protein
RA	2,287,684	C→T	5.6%	Q271* (CAG→TAG) ‡	PP_2016 →	hypothetical protein
RA	2,287,685	A→G	5.5%	Q271R (CAG→CGG) ‡	PP_2016 →	hypothetical protein
RA	2,287,688	T→A	6.7%	L272* (TTG→TAG)	PP_2016 →	hypothetical protein
RA	2,290,396	C→T	5.8%	intergenic (+21/‑254)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,397	C→G	5.5%	intergenic (+22/‑253)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,398	A→G	5.3%	intergenic (+23/‑252)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,291,309	C→T	43.6%	S220S (AGC→AGT)	PP_2018 →	BNR domain‑containing protein
RA	2,297,142	T→A	7.3%	T994S (ACC→TCC)	sbcC ←	exonuclease subunit SbcC
RA	2,297,143	G→C	6.0%	D993E (GAC→GAG) ‡	sbcC ←	exonuclease subunit SbcC
RA	2,297,144	T→A	6.0%	D993V (GAC→GTC) ‡	sbcC ←	exonuclease subunit SbcC
RA	2,298,604	G→A	5.2%	D506D (GAC→GAT)	sbcC ←	exonuclease subunit SbcC
RA	2,298,609	T→C	5.0%	I505V (ATC→GTC)	sbcC ←	exonuclease subunit SbcC
RA	2,299,727	T→C	48.1%	Y132C (TAC→TGC)	sbcC ←	exonuclease subunit SbcC
RA	2,301,426	T→A	5.5%	intergenic (‑70/‑261)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,427	G→C	5.5%	intergenic (‑71/‑260)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,428	T→A	5.5%	intergenic (‑72/‑259)	sbcD ← / → PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
RA	2,301,768	G→C	5.6%	E28Q (GAA→CAA) ‡	PP_5497 →	rhs repeat‑associated core domain‑containing protein
RA	2,301,770	A→G	5.5%	E28E (GAA→GAG) ‡	PP_5497 →	rhs repeat‑associated core domain‑containing protein
RA	2,301,772	G→C	6.0%	R29P (CGG→CCG)	PP_5497 →	rhs repeat‑associated core domain‑containing protein
RA	2,301,774	C→T	5.5%	L30L (CTG→TTG) ‡	PP_5497 →	rhs repeat‑associated core domain‑containing protein
RA	2,301,776	G→C	5.4%	L30L (CTG→CTC) ‡	PP_5497 →	rhs repeat‑associated core domain‑containing protein
RA	2,313,672	A→T	6.2%	L139Q (CTG→CAG)	benE‑I ←	benzoate transport protein
RA	2,313,675	A→T	6.2%	L138Q (CTG→CAG)	benE‑I ←	benzoate transport protein
RA	2,316,038	A→T	5.1%	intergenic (‑87/‑159)	PP_2037 ← / → PP_2038	aldolase/long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,320,806	C→A	5.5%	V145V (GTG→GTT)	PP_2041 ←	LysR family transcriptional regulator
RA	2,332,043	C→G	5.4%	A196G (GCC→GGC)	PP_2049 →	alcohol dehydrogenase
RA	2,332,048	G→C	6.4%	V198L (GTG→CTG) ‡	PP_2049 →	alcohol dehydrogenase
RA	2,332,049	T→A	5.9%	V198E (GTG→GAG) ‡	PP_2049 →	alcohol dehydrogenase
RA	2,332,050	G→C	5.9%	V198V (GTG→GTC) ‡	PP_2049 →	alcohol dehydrogenase
RA	2,332,055	C→G	6.5%	A200G (GCC→GGC)	PP_2049 →	alcohol dehydrogenase
RA	2,336,497	C→T	8.6%	intergenic (‑41/+39)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,498	A→T	8.6%	intergenic (‑42/+38)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,336,499	A→G	8.6%	intergenic (‑43/+37)	PP_2052 ← / ← PP_5500	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase/hypothetical protein
RA	2,356,425	G→T	5.1%	L133M (CTG→ATG)	PP_2070 ←	AraC family transcriptional regulator
RA	2,360,180	T→C	5.3%	K326R (AAG→AGG)	PP_2075 ←	membrane protein
RA	2,360,185	G→C	5.1%	P324P (CCC→CCG)	PP_2075 ←	membrane protein
RA	2,361,719	C→G	6.1%	G720R (GGC→CGC)	PP_2076 ←	hypothetical protein
RA	2,361,724	C→G	6.5%	R718P (CGG→CCG)	PP_2076 ←	hypothetical protein
RA	2,363,386	T→A	7.6%	D164V (GAC→GTC)	PP_2076 ←	hypothetical protein
RA	2,369,767	T→C	10.1%	L862P (CTG→CCG) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,768	G→C	10.2%	L862L (CTG→CTC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,769	G→A	10.9%	G863S (GGC→AGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,371,613	G→T	5.6%	A1477A (GCG→GCT)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,371,620	A→C	5.5%	S1480R (AGC→CGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,381,402	T→G	9.1%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,403	C→A	9.1%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,383,620	C→T	36.1%	A93T (GCC→ACC)	PP_2091 ←	serine/threonine‑protein kinase
RA	2,389,141	T→C	5.4%	M1T (ATG→ACG) †	rlmKL →	23S rRNA (guanine(2445)‑N(2))/(guanine(2069)‑N(7))‑ methyltransferase
RA	2,393,863	G→A	5.7%	E798K (GAG→AAG)	PP_2097 →	sensory box protein
RA	2,395,587	G→C	5.1%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,404,558	G→A	7.3%	R395R (CGG→CGA)	PP_2106 →	ammonium transporter
RA	2,404,559	A→T	7.3%	I396F (ATC→TTC) ‡	PP_2106 →	ammonium transporter
RA	2,404,560	T→C	7.3%	I396T (ATC→ACC) ‡	PP_2106 →	ammonium transporter
RA	2,405,348	G→C	5.1%	W115C (TGG→TGC)	PP_2108 →	hypothetical protein
RA	2,405,349	G→A	5.2%	V116M (GTG→ATG) ‡	PP_2108 →	hypothetical protein
RA	2,405,350	T→C	5.3%	V116A (GTG→GCG) ‡	PP_2108 →	hypothetical protein
RA	2,405,351	G→C	5.4%	V116V (GTG→GTC) ‡	PP_2108 →	hypothetical protein
RA	2,406,965	G→C	5.8%	intergenic (+220/+34)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,412,876	G→C	5.4%	intergenic (+140/‑281)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,877	G→C	5.5%	intergenic (+141/‑280)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,417,954	C→G	5.3%	P330R (CCC→CGC)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,417,957	C→A	5.3%	P331H (CCC→CAC)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,417,960	A→T	5.8%	D332V (GAC→GTC)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,417,963	T→G	5.1%	V333G (GTG→GGG)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,417,966	C→G	5.1%	A334G (GCG→GGG)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,442,668	G→T	6.7%	P602P (CCG→CCT)	topA →	DNA topoisomerase I
RA	2,442,673	A→C	7.0%	K604T (AAG→ACG)	topA →	DNA topoisomerase I
RA	2,443,500	T→A	5.6%	F6I (TTT→ATT) ‡	PP_2140 →	hypothetical protein
RA	2,443,501	T→A	5.7%	F6Y (TTT→TAT) ‡	PP_2140 →	hypothetical protein
RA	2,443,502	T→A	5.6%	F6L (TTT→TTA) ‡	PP_2140 →	hypothetical protein
RA	2,444,415	A→C	11.3%	*159G (TGA→GGA)	sulA ←	cell division inhibitor SulA
RA	2,444,419	G→T	11.5%	L157L (CTC→CTA) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,420	A→C	11.2%	L157R (CTC→CGC) ‡	sulA ←	cell division inhibitor SulA
RA	2,444,424	G→T	11.8%	R156S (CGC→AGC)	sulA ←	cell division inhibitor SulA
RA	2,445,044	T→G	6.6%	E156D (GAA→GAC) ‡	lexA‑I ←	transcriptional repressor
RA	2,445,045	T→A	6.8%	E156V (GAA→GTA) ‡	lexA‑I ←	transcriptional repressor
RA	2,445,046	C→A	6.5%	E156* (GAA→TAA) ‡	lexA‑I ←	transcriptional repressor
RA	2,445,358	G→C	6.4%	R52G (CGC→GGC)	lexA‑I ←	transcriptional repressor
RA	2,445,359	G→C	6.4%	A51A (GCC→GCG)	lexA‑I ←	transcriptional repressor
RA	2,456,782	T→C	5.6%	intergenic (+33/‑148)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,783	T→G	5.2%	intergenic (+34/‑147)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,785	G→A	5.0%	intergenic (+36/‑145)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,997	G→T	5.6%	R23L (CGC→CTC)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,457,000	T→A	5.2%	L24Q (CTG→CAG)	PP_2150 →	thiamine biosynthesis lipoprotein
RA	2,458,093	G→A	6.3%	intergenic (+165/‑40)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,097	G→C	6.2%	intergenic (+169/‑36)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,100	C→G	6.0%	intergenic (+172/‑33)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,103	G→C	6.2%	intergenic (+175/‑30)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,107	T→C	6.2%	intergenic (+179/‑26)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,468,261	G→C	10.5%	intergenic (‑25/+98)	PP_2161 ← / ← PP_2162	hypothetical protein/phosphonoacetaldehyde phosphonohydrolase‑like protein
RA	2,469,842	T→C	11.3%	intergenic (+11/+24)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,844	G→A	12.7%	intergenic (+13/+22)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,851	A→T	12.0%	intergenic (+20/+15)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,852	A→T	11.9%	intergenic (+21/+14)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,853	A→T	12.0%	intergenic (+22/+13)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,860	T→C	5.5%	intergenic (+29/+6)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,469,862	G→A	5.7%	intergenic (+31/+4)	vacJ → / ← PP_2164	lipoprotein VacJ/hypothetical protein
RA	2,480,117	G→C	5.6%	intergenic (‑56/+51)	PP_2173 ← / ← PP_2174	AraC family transcriptional regulator/hypothetical protein
RA	2,490,729	G→T	7.0%	G51V (GGC→GTC) ‡	PP_2185 →	formate dehydrogenase subunit alpha
RA	2,490,730	C→G	6.6%	G51G (GGC→GGG) ‡	PP_2185 →	formate dehydrogenase subunit alpha
RA	2,490,731	A→C	6.7%	T52P (ACC→CCC)	PP_2185 →	formate dehydrogenase subunit alpha
RA	2,502,992	C→T	5.5%	T96M (ACG→ATG)	speB →	agmatinase
RA	2,508,777	G→A	5.3%	S113L (TCG→TTG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,778	A→T	7.0%	S113T (TCG→ACG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,789	A→T	6.7%	M109K (ATG→AAG)	PP_2203 ←	hypothetical protein
RA	2,545,948	G→A	8.5%	R350H (CGC→CAC)	PP_2238 →	metallopeptidase
RA	2,563,845	C→T	100%	intergenic (+56/‑57)	PP_2247 → / → PP_2248	endoribonuclease/putative transporter
RA	2,628,114	T→C	5.6%	L400P (CTG→CCG)	tig →	trigger factor
RA	2,628,386	A→C	7.0%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,387	G→T	7.3%	G17C (GGC→TGC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,490	C→A	7.1%	P51Q (CCG→CAG) ‡	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,491	G→T	9.6%	P51P (CCG→CCT) ‡	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,669,671	T→G	6.8%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,674	C→A	6.8%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,673,177	A→C	8.5%	D164A (GAT→GCT)	PP_2340 →	hypothetical protein
RA	2,673,182	A→C	8.9%	M166L (ATG→CTG) ‡	PP_2340 →	hypothetical protein
RA	2,673,183	T→A	9.3%	M166K (ATG→AAG) ‡	PP_2340 →	hypothetical protein
RA	2,673,184	G→T	9.4%	M166I (ATG→ATT) ‡	PP_2340 →	hypothetical protein
RA	2,673,189	G→T	9.1%	S168I (AGC→ATC)	PP_2340 →	hypothetical protein
RA	2,693,803	G→A	12.4%	A32T (GCC→ACC)	PP_2362 →	usher protein
RA	2,694,601	T→C	100%	Y298H (TAC→CAC)	PP_2362 →	usher protein
RA	2,712,841	T→C	8.0%	T755A (ACG→GCG)	metH ←	cobalamin‑dependent methionine synthase
RA	2,729,030	G→A	6.8%	R253H (CGC→CAC)	PP_2390 →	LysR family transcriptional regulator
RA	2,750,090	C→A	6.3%	G134C (GGT→TGT)	PP_2406 ←	quinate/shikimate dehydrogenase
RA	2,753,883	A→C	7.1%	E70A (GAG→GCG)	czcA‑II →	cation efflux system protein
RA	2,753,885	A→G	7.1%	T71A (ACC→GCC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,886	C→T	7.2%	T71I (ACC→ATC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,888	G→T	7.3%	A72S (GCG→TCG)	czcA‑II →	cation efflux system protein
RA	2,787,623	G→A	9.6%	intergenic (+70/‑55)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,629	C→G	9.8%	intergenic (+76/‑49)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,630	C→G	9.8%	intergenic (+77/‑48)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,787,636	T→C	9.6%	intergenic (+83/‑42)	ahpC → / → ahpF	peroxiredoxin/alkylhydroperoxide reductase small subunit/alkyl hydroperoxide reductase subunit F
RA	2,789,594	G→C	6.1%	*63S (TGA→TCA)	PP_2441 →	hypothetical protein
RA	2,797,359	G→A	9.1%	E138K (GAA→AAA)	PP_2449 →	hypothetical protein
RA	2,799,171	A→G	8.9%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,177	C→T	8.8%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	8.9%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,817,666	T→A	7.5%	D127V (GAC→GTC)	PP_5526 ←	hypothetical protein
RA	2,821,395	Δ1 bp	100%	intergenic (‑64/‑327)	PP_2474 ← / → PP_2475	glutathione S‑transferase family protein/TetR family transcriptional regulator
RA	2,822,277	G→A	7.7%	A186T (GCC→ACC)	PP_2475 →	TetR family transcriptional regulator
RA	2,826,935	T→G	6.8%	D116E (GAT→GAG)	PP_2479 →	cytochrome c family protein
RA	2,826,939	A→G	7.8%	I118V (ATC→GTC)	PP_2479 →	cytochrome c family protein
RA	2,826,942	C→A	8.7%	L119I (CTC→ATC)	PP_2479 →	cytochrome c family protein
RA	2,852,397	T→A	6.9%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,868,489	G→T	9.8%	intergenic (+28/‑903)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,491	C→G	9.7%	intergenic (+30/‑901)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,493	A→C	9.8%	intergenic (+32/‑899)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,882,525	Δ1 bp	100%	intergenic (+13/‑67)	PP_2537 → / → PP_2538	hypothetical protein/hypothetical protein
RA	2,885,724	A→T	7.4%	L52Q (CTG→CAG)	PP_2541 ←	transcriptional factor‑like protein
RA	2,885,730	C→A	7.8%	R50L (CGC→CTC)	PP_2541 ←	transcriptional factor‑like protein
RA	2,916,227	C→T	13.3%	N1749N (AAC→AAT)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,922,545	G→T	7.9%	T903N (ACC→AAC)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,547	A→T	7.8%	F902L (TTT→TTA) ‡	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,549	A→C	9.5%	F902V (TTT→GTT) ‡	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,551	A→C	7.8%	L901R (CTG→CGG)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,922,556	A→G	7.5%	R899R (CGT→CGC)	PP_2563 ←	antibiotic biosynthesis protein
RA	2,946,587	G→C	22.6%	P312R (CCG→CGG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,946,588	G→C	22.5%	P312A (CCG→GCG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,951,334	G→C	8.2%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	8.0%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	8.0%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	7.3%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,964,888	G→C	6.1%	P580R (CCG→CGG)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,973,403	Δ1 bp	12.1%	coding (471/1713 nt)	PP_2600 ←	hypothetical protein
RA	3,000,764	G→T	6.3%	P78T (CCG→ACG)	PP_2624 ←	hypothetical protein
RA	3,000,765	T→G	6.4%	V77V (GTA→GTC)	PP_2624 ←	hypothetical protein
RA	3,000,768	C→G	6.4%	T76T (ACG→ACC)	PP_2624 ←	hypothetical protein
RA	3,000,772	A→C	6.9%	V75G (GTG→GGG)	PP_2624 ←	hypothetical protein
RA	3,000,920	G→A	6.1%	Q26* (CAG→TAG)	PP_2624 ←	hypothetical protein
RA	3,001,815	C→G	6.1%	A180G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,001,821	G→A	8.0%	R182Q (CGG→CAG)	PP_2625 →	hypothetical protein
RA	3,001,824	G→C	7.6%	G183A (GGC→GCC)	PP_2625 →	hypothetical protein
RA	3,001,827	T→C	7.6%	L184P (CTG→CCG)	PP_2625 →	hypothetical protein
RA	3,001,833	C→G	8.7%	A186G (GCC→GGC)	PP_2625 →	hypothetical protein
RA	3,006,468	T→G	13.2%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	13.9%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	13.9%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	12.5%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,049,761	C→T	8.6%	V307V (GTC→GTT)	PP_2662 →	hypothetical protein
RA	3,050,043	T→C	16.6%	intergenic (+15/‑126)	PP_2662 → / → PP_2663	hypothetical protein/hypothetical protein
RA	3,050,044	A→T	16.7%	intergenic (+16/‑125)	PP_2662 → / → PP_2663	hypothetical protein/hypothetical protein
RA	3,050,045	G→A	18.5%	intergenic (+17/‑124)	PP_2662 → / → PP_2663	hypothetical protein/hypothetical protein
RA	3,053,249	C→T	100%	R221H (CGT→CAT)	agmR ←	glycerol metabolism activator
RA	3,063,976	G→C	7.4%	L87L (CTG→CTC)	PP_2675 →	cytochrome c‑type protein
RA	3,063,977	G→C	6.2%	E88Q (GAG→CAG)	PP_2675 →	cytochrome c‑type protein
RA	3,065,251	A→T	7.7%	E64V (GAG→GTG)	PP_2677 →	hypothetical protein
RA	3,065,253	G→C	7.8%	D65H (GAT→CAT)	PP_2677 →	hypothetical protein
RA	3,065,256	G→C	8.0%	A66P (GCA→CCA) ‡	PP_2677 →	hypothetical protein
RA	3,065,258	A→T	8.0%	A66A (GCA→GCT) ‡	PP_2677 →	hypothetical protein
RA	3,079,641	G→C	7.9%	intergenic (‑376/+58)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,087,768	G→C	11.7%	R259R (CGC→CGG) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,087,769	C→G	11.9%	R259P (CGC→CCC) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,087,770	G→C	12.0%	R259G (CGC→GGC) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,089,040	Δ1 bp	8.8%	coding (113/510 nt)	PP_2697 ←	flavin reductase domain‑containing oxidoreductase
RA	3,097,121	T→C	9.1%	V42A (GTT→GCT)	PP_2705 →	hypothetical protein
RA	3,097,123	G→T	9.1%	E43* (GAA→TAA) ‡	PP_2705 →	hypothetical protein
RA	3,097,124	A→C	9.3%	E43A (GAA→GCA) ‡	PP_2705 →	hypothetical protein
RA	3,097,126	G→A	8.7%	A44T (GCC→ACC)	PP_2705 →	hypothetical protein
RA	3,123,184	G→C	7.3%	G207R (GGG→CGG) ‡	PP_2740 →	MerR family transcriptional regulator
RA	3,123,185	G→C	7.3%	G207A (GGG→GCG) ‡	PP_2740 →	MerR family transcriptional regulator
RA	3,139,818	G→A	8.7%	E124E (GAG→GAA)	sfnB →	SfnB family sulfur acquisition oxidoreductase
RA	3,146,578	G→C	8.2%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,579	G→C	8.0%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,150,455	G→A	8.7%	G187R (GGG→AGG)	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,160,096	T→C	7.7%	F4L (TTC→CTC)	PP_2775 →	glycine betaine/L‑proline ABC transporter substrate‑binding protein
RA	3,189,278	G→C	10.2%	L458V (CTG→GTG)	PP_2799 ←	class III aminotransferase
RA	3,189,279	G→C	9.7%	H457Q (CAC→CAG)	PP_2799 ←	class III aminotransferase
RA	3,200,160	G→A	100%	Q132Q (CAG→CAA)	PP_2807 →	hypothetical protein
RA	3,204,809	T→C	6.6%	I38T (ATC→ACC)	PP_2811 →	hypothetical protein
RA	3,220,542	G→A	6.5%	A157V (GCC→GTC)	PP_5539 ←	hypothetical protein
RA	3,222,944	A→G	80.4%	intergenic (‑251/+309)	PP_2823 ← / ← PP_2824	methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator
RA	3,232,958	C→A	5.3%	P49Q (CCG→CAG)	GbpR →	galactose‑binding protein regulator
RA	3,232,964	C→G	5.3%	A51G (GCC→GGC)	GbpR →	galactose‑binding protein regulator
RA	3,232,966	A→G	5.2%	S52G (AGC→GGC)	GbpR →	galactose‑binding protein regulator
RA	3,232,970	T→G	5.1%	L53R (CTG→CGG)	GbpR →	galactose‑binding protein regulator
RA	3,239,055	G→T	6.1%	Q62H (CAG→CAT)	PP_2837 →	uronate transporter
RA	3,239,057	T→G	6.1%	L63W (TTG→TGG)	PP_2837 →	uronate transporter
RA	3,239,062	A→C	6.3%	M65L (ATG→CTG)	PP_2837 →	uronate transporter
RA	3,247,257	T→C	8.0%	L119P (CTG→CCG)	ureD →	urease accessory protein
RA	3,250,260	A→G	7.5%	E56G (GAA→GGA)	ureE →	urease accessory protein
RA	3,260,613	G→C	6.4%	T69T (ACC→ACG)	PP_2857 ←	hypothetical protein
RA	3,261,795	A→G	8.0%	Y111H (TAC→CAC)	PP_2859 ←	hypothetical protein
RA	3,266,102	T→C	10.2%	intergenic (+19/+40)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,103	C→T	10.2%	intergenic (+20/+39)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,111	G→C	14.6%	intergenic (+28/+31)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,113	A→T	15.1%	intergenic (+30/+29)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,114	A→T	15.0%	intergenic (+31/+28)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,116	G→C	17.0%	intergenic (+33/+26)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,124	A→G	10.2%	intergenic (+41/+18)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,266,125	G→A	11.1%	intergenic (+42/+17)	PP_2863 → / ← PP_2864	membrane protein/hypothetical protein
RA	3,273,655	G→A	8.8%	A111T (GCA→ACA)	PP_2871 →	class II aldolase/adducin domain‑containing protein
RA	3,273,660	G→C	8.8%	L112F (TTG→TTC)	PP_2871 →	class II aldolase/adducin domain‑containing protein
RA	3,273,661	G→C	9.7%	E113Q (GAA→CAA)	PP_2871 →	class II aldolase/adducin domain‑containing protein
RA	3,273,666	T→C	8.9%	C114C (TGT→TGC)	PP_2871 →	class II aldolase/adducin domain‑containing protein
RA	3,303,967	T→C	8.9%	G201G (GGT→GGC)	cysS →	cysteine‑‑tRNA ligase
RA	3,303,968	C→G	8.9%	R202G (CGC→GGC) ‡	cysS →	cysteine‑‑tRNA ligase
RA	3,303,969	G→A	8.8%	R202H (CGC→CAC) ‡	cysS →	cysteine‑‑tRNA ligase
RA	3,327,193	A→C	8.9%	L338R (CTG→CGG)	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,327,196	A→G	9.3%	V337A (GTC→GCC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,327,197	C→T	9.1%	V337I (GTC→ATC) ‡	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,327,200	G→T	8.9%	R336R (CGG→AGG)	udg ←	UDP‑glucose 6‑dehydrogenase
RA	3,335,781	C→T	8.4%	R272H (CGC→CAC)	yghU ←	GSH‑dependent disulfide bond oxidoreductase
RA	3,343,483	T→C	100%	intergenic (‑477/‑115)	yefM ← / → PP_5541	YoeB‑YefM toxin‑antitoxin system antitoxin/DNA‑binding transcriptional repressor/hypothetical protein
RA	3,372,120	T→C	10.5%	intergenic (‑48/‑71)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,121	G→C	10.9%	intergenic (‑49/‑70)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,372,122	G→A	11.0%	intergenic (‑50/‑69)	csoR ← / → PP_2970	copper utilization transcriptional regulator/hypothetical protein
RA	3,376,435	Δ1 bp	14.0%	intergenic (+10/‑138)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,439	G→C	14.0%	intergenic (+14/‑134)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,376,442:1	+T	13.7%	intergenic (+17/‑131)	PP_2975 → / → PP_2976	insertion element ISR1 protein A3/transposase
RA	3,394,889	G→A	8.7%	V130V (GTG→GTA)	PP_2998 →	2‑dehydropantoate 2‑reductase
RA	3,422,810	C→T	8.7%	A323V (GCT→GTT) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,811	T→A	8.7%	A323A (GCT→GCA) ‡	PP_3038 →	TraC domain‑containing protein
RA	3,422,812	A→G	8.7%	T324A (ACC→GCC)	PP_3038 →	TraC domain‑containing protein
RA	3,456,312	C→A	9.0%	E51* (GAG→TAG)	eco ←	ecotin
RA	3,471,333	A→G	7.7%	L400P (CTC→CCC)	PP_3084 ←	ferric siderophore receptor
RA	3,511,916	A→C	8.0%	K195T (AAA→ACA) ‡	PP_3108 →	rhs family protein
RA	3,511,917	A→G	8.0%	K195K (AAA→AAG) ‡	PP_3108 →	rhs family protein
RA	3,511,920	C→T	7.7%	A196A (GCC→GCT)	PP_3108 →	rhs family protein
RA	3,511,921	G→T	7.7%	V197F (GTC→TTC)	PP_3108 →	rhs family protein
RA	3,520,084	T→A	16.3%	intergenic (+703/‑177)	PP_5580 → / → PP_5582	hypothetical protein/hypothetical protein
RA	3,529,614	C→G	6.6%	G477G (GGC→GGG)	dnaEB →	error‑prone DNA polymerase
RA	3,535,669	T→C	10.5%	W268R (TGG→CGG)	PP_3124 →	short chain fatty acid transporter
RA	3,542,318	A→G	6.3%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,321	C→T	6.7%	P134P (CCG→CCA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,604,693	A→C	7.3%	intergenic (‑40/‑88)	PP_3179 ← / → PP_3180	LysR family transcriptional regulator/Smp‑30/Cgr1 family protein
RA	3,604,695	G→T	8.4%	intergenic (‑42/‑86)	PP_3179 ← / → PP_3180	LysR family transcriptional regulator/Smp‑30/Cgr1 family protein
RA	3,650,014	A→T	9.1%	intergenic (+1491/+200)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,015	T→A	8.8%	intergenic (+1492/+199)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,018	T→A	8.8%	intergenic (+1495/+196)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,650,019	A→T	8.3%	intergenic (+1496/+195)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,681,805	C→T	100%	intergenic (‑154/‑31)	PP_3247 ← / → PP_3248	bile acid/Na+ symporter family transporter/Dyp‑type peroxidase family protein
RA	3,685,015	C→A	6.3%	intergenic (+27/‑112)	PP_3250 → / → PP_5593	transporter/hypothetical protein
RA	3,694,029	T→G	10.7%	R713R (CGA→CGC) ‡	ligD ←	DNA ligase D
RA	3,694,030	C→A	10.0%	R713L (CGA→CTA) ‡	ligD ←	DNA ligase D
RA	3,703,267	Δ1 bp	11.1%	coding (91/270 nt)	PP_5596 →	hypothetical protein
RA	3,703,273:1	+C	10.3%	coding (97/270 nt)	PP_5596 →	hypothetical protein
RA	3,726,415	T→G	7.9%	F356L (TTT→TTG)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,726,416	C→A	7.6%	Q357K (CAA→AAA)	PP_3291 →	metallo‑beta‑lactamase family protein
RA	3,735,139	Δ1 bp	8.3%	coding (36/3093 nt)	PP_3302 →	RND family transporter
RA	3,735,143:1	+T	8.9%	coding (40/3093 nt)	PP_3302 →	RND family transporter
RA	3,747,964	A→T	8.0%	L266Q (CTG→CAG)	kefB‑II ←	glutathione‑regulated potassium/H+ antiporter
RA	3,752,381	T→C	80.5%	D501G (GAC→GGC)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,595	G→T	13.1%	A96A (GCC→GCA)	PP_3316 ←	chaperone‑associated ATPase
RA	3,753,598	A→C	14.3%	V95V (GTT→GTG)	PP_3316 ←	chaperone‑associated ATPase
RA	3,757,890	G→A	8.3%	S68N (AGC→AAC)	hemBB →	porphobilinogen synthase
RA	3,763,083	C→T	12.5%	T109I (ACC→ATC)	PP_3326 →	hypothetical protein
RA	3,763,086	A→T	12.1%	H110L (CAT→CTT)	PP_3326 →	hypothetical protein
RA	3,763,089	T→A	12.5%	V111D (GTC→GAC)	PP_3326 →	hypothetical protein
RA	3,763,092	A→T	12.5%	K112M (AAG→ATG)	PP_3326 →	hypothetical protein
RA	3,763,095	A→G	12.1%	D113G (GAT→GGT)	PP_3326 →	hypothetical protein
RA	3,763,502	A→G	6.9%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,504	G→C	6.8%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,506	C→T	6.8%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,787,536:1	+C	100%	coding (1099/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,824,767	G→A	100%	C65C (TGC→TGT)	kguE ←	epimerase
RA	3,829,356	A→G	9.7%	I78T (ATT→ACT)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,829,359	C→G	10.0%	G77A (GGC→GCC)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,829,362	C→T	10.0%	S76N (AGT→AAT)	PP_3382 ←	gluconate 2‑dehydrogenase cytochrome c subunit
RA	3,833,890	G→A	9.6%	L185L (CTG→CTA)	vgrG‑II →	type VI secretion system protein
RA	3,838,507	G→C	5.9%	R701P (CGG→CCG)	PP_3388 →	hypothetical protein
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,854,437	G→A	100%	P256S (CCG→TCG)	PP_3403 ←	quercetin 2,3‑dioxygenase
RA	3,870,423	G→A	8.5%	R166C (CGC→TGC)	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,880,375	C→G	7.1%	A737G (GCC→GGC)	mexF →	multidrug RND transporter MexF
RA	3,885,304	C→T	6.8%	P397S (CCA→TCA)	PP_3429 →	two component system response regulator/sensor histidine kinase
RA	3,890,401	T→C	7.0%	E106E (GAA→GAG)	hpd ←	4‑hydroxyphenylpyruvate dioxygenase
RA	3,893,823:1	+G	6.5%	coding (1236/1572 nt)	yegH ←	putative transporter
RA	3,893,834	A→C	8.1%	F409V (TTC→GTC)	yegH ←	putative transporter
RA	3,893,835	G→T	8.3%	D408E (GAC→GAA)	yegH ←	putative transporter
RA	3,893,842	A→G	7.9%	F406S (TTC→TCC) ‡	yegH ←	putative transporter
RA	3,893,843	A→G	8.0%	F406L (TTC→CTC) ‡	yegH ←	putative transporter
RA	3,893,846	Δ1 bp	8.1%	coding (1213/1572 nt)	yegH ←	putative transporter
RA	3,894,867	G→A	84.9%	S64S (AGC→AGT)	yegH ←	putative transporter
RA	3,920,270	A→G	7.4%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,920,273	C→T	7.7%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,924,590	A→T	6.2%	L75Q (CTG→CAG)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,931,916	T→C	100%	I521V (ATC→GTC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,932,041	C→G	6.9%	G479A (GGC→GCC)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,942,940	A→G	7.5%	V318A (GTG→GCG) ‡	PP_3478 ←	secretion protein
RA	3,942,941	C→A	7.8%	V318L (GTG→TTG) ‡	PP_3478 ←	secretion protein
RA	3,942,943	G→A	7.7%	A317V (GCG→GTG)	PP_3478 ←	secretion protein
RA	3,942,948	C→G	8.3%	S315S (TCG→TCC)	PP_3478 ←	secretion protein
RA	3,942,955	T→G	8.4%	D313A (GAC→GCC) ‡	PP_3478 ←	secretion protein
RA	3,942,956	C→T	7.8%	D313N (GAC→AAC) ‡	PP_3478 ←	secretion protein
RA	3,947,128	A→G	6.5%	G307G (GGT→GGC) ‡	PP_3483 ←	type II secretion system protein
RA	3,947,129	C→G	6.4%	G307A (GGT→GCT) ‡	PP_3483 ←	type II secretion system protein
RA	3,949,092	Δ1 bp	10.4%	coding (442/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,097	G→A	10.4%	P146L (CCG→CTG)	PP_3485 ←	hypothetical protein
RA	3,949,101:1	+A	10.9%	coding (433/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,108	Δ1 bp	11.9%	coding (426/642 nt)	PP_3485 ←	hypothetical protein
RA	3,949,113	T→C	11.9%	S141G (AGC→GGC)	PP_3485 ←	hypothetical protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,960,613	T→C	12.7%	intergenic (‑229/‑100)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,615	T→A	15.7%	intergenic (‑231/‑98)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,960,617	G→A	12.7%	intergenic (‑233/‑96)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,979,666	T→G	8.9%	D322A (GAC→GCC) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,979,667	C→T	8.8%	D322N (GAC→AAC) ‡	cobN ←	aerobic cobaltochelatase subunit CobN
RA	4,001,333	G→A	7.2%	A339T (GCC→ACC)	dmoA‑II →	dimethyl‑sulfide monooxygenase
RA	4,002,488	G→A	10.1%	V224V (GTG→GTA)	allE →	S‑ureidoglycine aminohydrolase
RA	4,002,489	T→C	10.2%	Y225H (TAC→CAC)	allE →	S‑ureidoglycine aminohydrolase
RA	4,010,375	C→G	6.8%	R82P (CGC→CCC)	pobA ←	4‑hydroxybenzoate 3‑monooxygenase
RA	4,010,377	C→G	6.8%	G81G (GGG→GGC)	pobA ←	4‑hydroxybenzoate 3‑monooxygenase
RA	4,021,361	C→T	11.1%	intergenic (+5/+3)	PP_3546 → / ← PP_3547	two‑component system sensor histidine kinase/response regulator/NAD(P)‑binding oxidoreductase
RA	4,030,448	C→T	6.1%	A37A (GCC→GCT)	PP_3554 →	acyl‑CoA dehydrogenase family protein
RA	4,042,321	C→A	7.4%	L137I (CTC→ATC) ‡	PP_3563 →	hypothetical protein
RA	4,042,322	T→G	7.4%	L137R (CTC→CGC) ‡	PP_3563 →	hypothetical protein
RA	4,046,859	C→A	9.1%	T8N (ACC→AAC)	PP_3568 →	hypothetical protein
RA	4,048,866	C→T	7.9%	H473Y (CAC→TAC)	quiA →	quinate dehydrogenase
RA	4,067,034	A→G	7.1%	L677S (TTG→TCG)	mdtC ←	multidrug transporter membrane protein
RA	4,070,583	T→C	5.2%	K526E (AAG→GAG)	mdtB ←	multidrug transporter membrane protein
RA	4,084,756	G→A	8.7%	R61H (CGC→CAC)	PP_3595 →	amino acid ABC transporter permease
RA	4,084,758	A→C	8.9%	M62L (ATG→CTG) ‡	PP_3595 →	amino acid ABC transporter permease
RA	4,084,759	T→A	9.1%	M62K (ATG→AAG) ‡	PP_3595 →	amino acid ABC transporter permease
RA	4,090,056	C→G	6.5%	S36C (TCC→TGC)	gudP →	glucarate transporter
RA	4,133,526	G→C	6.9%	T148S (ACC→AGC) ‡	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,527	T→C	6.9%	T148A (ACC→GCC) ‡	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,138,575	A→C	6.6%	D25A (GAC→GCC)	PP_3643 →	oxidoreductase
RA	4,138,585	C→A	7.9%	G28G (GGC→GGA)	PP_3643 →	oxidoreductase
RA	4,138,586	T→G	8.2%	S29A (TCG→GCG) ‡	PP_3643 →	oxidoreductase
RA	4,138,588	G→C	8.3%	S29S (TCG→TCC) ‡	PP_3643 →	oxidoreductase
RA	4,138,596	G→T	6.7%	G32V (GGC→GTC)	PP_3643 →	oxidoreductase
RA	4,149,779	G→C	7.9%	Q77H (CAG→CAC)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,781	C→G	7.4%	P78R (CCG→CGG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,149,783	G→C	7.7%	V79L (GTG→CTG)	PP_3654 →	leucine‑responsive regulatory protein
RA	4,151,043	G→A	6.9%	A216T (GCC→ACC)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,160,184	G→A	11.1%	T308T (ACG→ACA)	PP_3662 →	hypothetical protein
RA	4,163,502	T→G	7.9%	intergenic (‑41/‑141)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,505	C→A	8.0%	intergenic (‑44/‑138)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,163,509	G→A	8.5%	intergenic (‑48/‑134)	pssA ← / → PP_3665	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase/AraC family transcriptional regulator
RA	4,167,011	C→T	7.4%	M155I (ATG→ATA)	creA ←	creatinase
RA	4,176,696	C→T	7.8%	Y459Y (TAC→TAT)	PP_3676 →	hypothetical protein
RA	4,176,698	G→A	7.8%	R460H (CGT→CAT) ‡	PP_3676 →	hypothetical protein
RA	4,176,699	T→C	7.8%	R460R (CGT→CGC) ‡	PP_3676 →	hypothetical protein
RA	4,176,701	A→G	7.7%	D461G (GAT→GGT)	PP_3676 →	hypothetical protein
RA	4,188,519	A→T	9.2%	intergenic (+115/‑219)	PP_3684 → / → PP_5611	hypothetical protein/transcriptional regulator
RA	4,191,108	G→T	7.4%	intergenic (‑440/‑717)	PP_5612 ← / → PP_5613	hypothetical protein/hypothetical protein
RA	4,191,109	A→T	8.2%	intergenic (‑441/‑716)	PP_5612 ← / → PP_5613	hypothetical protein/hypothetical protein
RA	4,201,710	A→T	6.1%	V2022V (GTT→GTA)	PP_3691 ←	DNA helicase‑related protein
RA	4,214,483	G→A	12.1%	L157L (CTG→TTG)	PP_3696 ←	hypothetical protein
RA	4,232,797	A→G	9.7%	intergenic (‑4/‑65)	PP_3710 ← / → PP_5626	hypothetical protein/repressor‑like DNA‑binding domain‑containing protein
RA	4,232,804	C→T	8.8%	intergenic (‑11/‑58)	PP_3710 ← / → PP_5626	hypothetical protein/repressor‑like DNA‑binding domain‑containing protein
RA	4,232,808	T→A	8.9%	intergenic (‑15/‑54)	PP_3710 ← / → PP_5626	hypothetical protein/repressor‑like DNA‑binding domain‑containing protein
RA	4,233,578	A→G	7.8%	V496A (GTC→GCC) ‡	PP_3711 ←	diguanylate cyclase
RA	4,233,579	C→T	8.3%	V496I (GTC→ATC) ‡	PP_3711 ←	diguanylate cyclase
RA	4,235,170	A→T	7.3%	intergenic (‑106/+56)	PP_3711 ← / ← PP_3712	diguanylate cyclase/hypothetical protein
RA	4,239,320	C→G	8.6%	intergenic (+63/+70)	catR → / ← PP_3717	HTH‑type transcriptional regulator/LuxR family transcriptional regulator
RA	4,239,323	C→G	8.1%	intergenic (+66/+67)	catR → / ← PP_3717	HTH‑type transcriptional regulator/LuxR family transcriptional regulator
RA	4,244,358	G→C	6.9%	S221R (AGC→AGG)	aruH ←	arginine‑‑pyruvate transaminase AruH
RA	4,248,898	C→T	7.2%	A377T (GCG→ACG)	PP_3724 ←	acyl‑CoA synthetase
RA	4,267,765:1	+C	100%	coding (93/1254 nt)	galP‑IV ←	porin‑like protein
RA	4,271,256	G→A	7.5%	A466T (GCC→ACC)	mrdA‑I →	transpeptidase
RA	4,297,594	G→A	9.2%	R154C (CGC→TGC)	PP_3768 ←	shikimate 5‑dehydrogenase
RA	4,297,595	T→C	8.9%	A153A (GCA→GCG)	PP_3768 ←	shikimate 5‑dehydrogenase
RA	4,299,657	T→C	6.4%	G96G (GGT→GGC)	PP_3772 →	repressor protein‑like protein
RA	4,301,058	A→G	8.9%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,305,611	T→C	5.9%	A148A (GCA→GCG)	PP_3777 ←	hypothetical protein
RA	4,321,039	C→G	8.2%	intergenic (‑275/‑143)	PP_3791 ← / → PP_5629	site‑specific recombinase/protease/amidase
RA	4,336,532:1	+C	100%	coding (683/885 nt)	PP_3811 ←	LysR family transcriptional regulator
RA	4,341,848	A→G	9.1%	I161V (ATC→GTC)	PP_3815 →	polyamine ABC transporter permease
RA	4,348,705	A→G	53.7%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,365,164	A→C	6.8%	intergenic (‑25/‑48)	PP_3841 ← / → PP_3842	MerR family transcriptional regulator/hypothetical protein
RA	4,365,165	G→T	6.8%	intergenic (‑26/‑47)	PP_3841 ← / → PP_3842	MerR family transcriptional regulator/hypothetical protein
RA	4,366,723	G→A	100%	R4R (CGC→CGT)	PP_3843 ←	hypothetical protein
RA	4,375,442	C→A	13.5%	A32S (GCG→TCG)	PP_5637 ←	hypothetical protein
RA	4,375,444	A→T	13.9%	V31D (GTC→GAC)	PP_5637 ←	hypothetical protein
RA	4,375,446	T→G	14.3%	R30R (CGA→CGC)	PP_5637 ←	hypothetical protein
RA	4,381,086	G→A	11.1%	A568A (GCC→GCT)	PP_3857 ←	hypothetical protein
RA	4,395,523	G→C	7.2%	A84G (GCC→GGC)	PP_3871 ←	hypothetical protein
RA	4,400,023	C→T	9.7%	V379I (GTT→ATT)	PP_3879 ←	HK97 family portal protein
RA	4,410,778	G→C	10.3%	H121Q (CAC→CAG)	PP_3894 ←	replication protein O
RA	4,430,009	A→G	6.5%	M94V (ATG→GTG)	PP_3924 →	hypothetical protein
RA	4,436,713	C→T	8.9%	intergenic (+10/‑128)	yfbS → / → PP_3932	putative transporter/diguanylate cyclase
RA	4,452,687	G→A	100%	W764* (TGG→TAG)	nicB →	nicotinate dehydrogenase subunit B
RA	4,475,794	A→G	6.5%	A47A (GCT→GCC)	PP_3965 ←	transposase
RA	4,475,902	G→A	8.3%	T11T (ACC→ACT)	PP_3965 ←	transposase
RA	4,477,835	G→A	6.5%	R53C (CGT→TGT)	PP_3968 ←	sensor histidine kinase
RA	4,492,395	A→G	6.9%	Q93R (CAA→CGA)	PP_3983 →	hypothetical protein
RA	4,496,667	T→A	6.7%	intergenic (+17/+35)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,496,668	A→G	6.6%	intergenic (+18/+34)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,496,672	T→A	6.6%	intergenic (+22/+30)	PP_3987 → / ← PP_5651	site‑specific recombinase/hypothetical protein
RA	4,516,184	T→G	8.9%	C17G (TGC→GGC)	ate →	arginyl‑tRNA‑‑protein transferase
RA	4,516,189	C→G	9.1%	S18R (AGC→AGG)	ate →	arginyl‑tRNA‑‑protein transferase
RA	4,516,197	C→A	11.3%	P21Q (CCG→CAG)	ate →	arginyl‑tRNA‑‑protein transferase
RA	4,528,353	T→A	7.4%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,530,025	T→A	8.9%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	13.3%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,532,942	C→T	100%	A225V (GCC→GTC)	PP_4020 →	oxidoreductase
RA	4,557,029	T→G	9.3%	K150Q (AAG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,034	A→C	9.5%	L148R (CTG→CGG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,037	G→T	9.7%	P147Q (CCG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,042	C→A	10.0%	L145L (CTG→CTT)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,561,243	G→C	6.9%	I102M (ATC→ATG)	PP_4048 ←	hypothetical protein
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	66.7%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,057:1	+C	33.3%	intergenic (+140/+75)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,604,204	C→G	8.8%	P12A (CCG→GCG) ‡	PP_4076 →	hypothetical protein
RA	4,604,205	C→G	8.8%	P12R (CCG→CGG) ‡	PP_4076 →	hypothetical protein
RA	4,612,655	A→T	7.3%	intergenic (+1617/‑490)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,659	G→T	7.3%	intergenic (+1621/‑486)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,663	G→C	7.4%	intergenic (+1625/‑482)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,664	T→A	7.4%	intergenic (+1626/‑481)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,665	G→C	7.4%	intergenic (+1627/‑480)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,669	A→C	6.8%	intergenic (+1631/‑476)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,612,673	A→T	8.8%	intergenic (+1635/‑472)	hcpC‑II → / → PP_4084	hemolysin‑coregulated protein/hypothetical protein
RA	4,615,343	G→A	7.1%	V572M (GTG→ATG) ‡	PP_4085 →	rhs family protein
RA	4,615,345	G→C	7.0%	V572V (GTG→GTC) ‡	PP_4085 →	rhs family protein
RA	4,615,347	T→C	7.1%	I573T (ATT→ACT)	PP_4085 →	rhs family protein
RA	4,623,195	T→C	8.8%	intergenic (+1788/+2776)	PP_5654 → / ← PP_4091	phosphotriesterase/transposase
RA	4,623,823	C→T	9.6%	intergenic (+2416/+2148)	PP_5654 → / ← PP_4091	phosphotriesterase/transposase
RA	4,651,193	C→T	8.3%	R317Q (CGG→CAG)	PP_4114 ←	hypothetical protein
RA	4,669,731	G→C	10.8%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,732	G→A	10.7%	V22M (GTG→ATG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,733	T→C	11.1%	V22A (GTG→GCG) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,734	G→C	10.9%	V22V (GTG→GTC) ‡	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,744	C→G	8.7%	L26V (CTG→GTG)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,672,934	T→G	11.8%	Q25H (CAA→CAC)	PP_4136 ←	LuxR family transcriptional regulator
RA	4,673,550	G→C	8.7%	G108R (GGG→CGG)	PP_4137 →	outer membrane siderophore receptor
RA	4,694,425	C→G	5.9%	P767R (CCC→CGC)	PP_4154 →	class 3 aminotransferase
RA	4,694,433	T→A	5.5%	Y770N (TAC→AAC) ‡	PP_4154 →	class 3 aminotransferase
RA	4,694,434	A→G	5.5%	Y770C (TAC→TGC) ‡	PP_4154 →	class 3 aminotransferase
RA	4,694,441	C→G	5.5%	R772R (CGC→CGG)	PP_4154 →	class 3 aminotransferase
RA	4,694,739	T→C	100%	W872R (TGG→CGG)	PP_4154 →	class 3 aminotransferase
RA	4,710,174	T→C	6.6%	A102A (GCA→GCG)	PP_4168 ←	hypothetical protein
RA	4,713,788	T→C	6.8%	W674R (TGG→CGG)	PP_4171 →	hypothetical protein
RA	4,716,884	C→G	6.6%	intergenic (+183/‑25)	PP_4173 → / → fabA	two‑component system sensor histidine kinase/response regulator/3R‑3‑hydroxydecanoyl‑ACP dehydratase
RA	4,718,688	C→A	10.1%	intergenic (+32/+99)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,689	T→C	9.9%	intergenic (+33/+98)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,690	G→C	9.9%	intergenic (+34/+97)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,691	G→A	10.1%	intergenic (+35/+96)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,692	T→G	9.8%	intergenic (+36/+95)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,759,514	G→A	100%	G90G (GGC→GGT)	pvdP ←	pyoverdine biosynthesis‑like protein
RA	4,767,818	C→T	9.8%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	9.8%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,796,617	G→C	15.2%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	13.9%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	10.5%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,797,609	T→A	7.0%	N125I (AAC→ATC)	PP_4224 ←	sensor histidine kinase
RA	4,799,826	G→T	6.7%	G143C (GGC→TGC)	PP_5664 →	hypothetical protein
RA	4,822,513	G→A	7.4%	R2893C (CGT→TGT)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,823,343	G→A	7.8%	P2616L (CCG→CTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,272	G→C	17.3%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,788	T→C	9.8%	E134E (GAA→GAG) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,790	C→G	9.7%	E134Q (GAA→CAA) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,791	C→G	9.7%	L133L (CTG→CTC) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,793	G→A	9.2%	L133L (CTG→TTG) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,840,143	T→C	5.6%	V170A (GTG→GCG)	ccoN‑II →	cbb3‑type cytochrome c oxidase subunit 1
RA	4,842,896	Δ1 bp	13.8%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,904:1	+G	14.8%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,877,034	A→T	7.4%	intergenic (‑82/‑318)	pucM ← / → puuE	5‑hydroxyisourate hydrolase/allantoinase
RA	4,877,036	G→T	7.4%	intergenic (‑84/‑316)	pucM ← / → puuE	5‑hydroxyisourate hydrolase/allantoinase
RA	4,877,041	T→A	7.7%	intergenic (‑89/‑311)	pucM ← / → puuE	5‑hydroxyisourate hydrolase/allantoinase
RA	4,877,043	A→C	7.6%	intergenic (‑91/‑309)	pucM ← / → puuE	5‑hydroxyisourate hydrolase/allantoinase
RA	4,893,641	A→T	15.3%	intergenic (+116/‑92)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,893,642	A→T	15.4%	intergenic (+117/‑91)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,893,643	A→T	15.4%	intergenic (+118/‑90)	pyk → / → PP_4302	pyruvate kinase/urea transporter
RA	4,895,897	G→A	13.8%	V118I (GTC→ATC) ‡	PP_4304 →	VIC family cation transporter
RA	4,895,899	C→G	13.3%	V118V (GTC→GTG) ‡	PP_4304 →	VIC family cation transporter
RA	4,895,901	T→C	13.5%	I119T (ATC→ACC)	PP_4304 →	VIC family cation transporter
RA	4,898,333	Δ1 bp	5.6%	coding (211/957 nt)	PP_4306 ←	hypothetical protein
RA	4,900,065	A→G	7.2%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	7.2%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	7.4%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	7.5%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,902,585	C→T	7.2%	A167V (GCC→GTC)	PP_4310 →	hydantoin racemase
RA	4,913,888	T→C	9.4%	T271A (ACC→GCC)	ccmF ←	holocytochrome c synthetase
RA	4,917,965	G→A	8.7%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,917,966	T→C	8.8%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,921,094	A→T	5.8%	E501D (GAA→GAT)	PP_4330 →	toxin‑like protein
RA	4,928,017	A→G	9.5%	S719P (TCC→CCC)	cheA ←	chemotaxis histidine kinase CheA
RA	4,928,022	C→T	9.7%	G717D (GGC→GAC)	cheA ←	chemotaxis histidine kinase CheA
RA	4,950,972	T→G	12.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,957,895	A→G	100%	S269P (TCG→CCG)	fliG ←	flagellar motor switch protein
RA	4,971,954	G→T	8.6%	intergenic (‑389/+28)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,955	C→G	8.6%	intergenic (‑390/+27)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,956	A→C	8.5%	intergenic (‑391/+26)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,983,125	T→C	7.7%	S5G (AGT→GGT)	flgC ←	flagellar basal‑body rod protein FlgC
RA	4,988,362	G→C	13.1%	intergenic (+32/+62)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,363	C→A	13.0%	intergenic (+33/+61)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,364	T→G	13.1%	intergenic (+34/+60)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,365	G→C	13.0%	intergenic (+35/+59)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,998,172	A→C	6.4%	intergenic (‑72/‑144)	PP_4405 ← / → PP_4406	sensory box protein/hypothetical protein
RA	5,041,195	C→G	11.9%	intergenic (+173/‑489)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,198	C→T	11.1%	intergenic (+176/‑486)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,200	T→A	10.6%	intergenic (+178/‑484)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,202	A→G	10.6%	intergenic (+180/‑482)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,205	C→G	10.9%	intergenic (+183/‑479)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,211:1	+T	9.3%	intergenic (+189/‑473)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,043,260	T→C	7.1%	F110F (TTT→TTC)	PP_4448 →	hypothetical protein
RA	5,050,473	T→C	8.1%	P196P (CCA→CCG)	PP_5687 ←	MFS transporter
RA	5,070,807	T→G	7.6%	D27A (GAC→GCC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,809	G→T	7.4%	N26K (AAC→AAA)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,814	A→C	7.4%	F25V (TTC→GTC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,815	G→T	7.2%	D24E (GAC→GAA)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,820	A→C	6.7%	F23V (TTT→GTT)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,070,822	C→A	8.9%	G22V (GGC→GTC)	PP_4466 ←	TauD/TfdA family dioxygenase
RA	5,093,200	C→T	12.1%	S141N (AGC→AAC)	PP_4482 ←	AraC family transcriptional regulator
RA	5,102,594	G→T	6.1%	E237D (GAG→GAT)	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,596	A→T	6.1%	D238V (GAC→GTC)	phhA →	phenylalanine‑4‑hydroxylase
RA	5,102,598	A→C	6.0%	I239L (ATC→CTC)	phhA →	phenylalanine‑4‑hydroxylase
RA	5,134,564:1	+C	100%	coding (376/600 nt)	PP_4520 ←	hypothetical protein
RA	5,137,331	T→G	7.2%	K91Q (AAG→CAG)	PP_4522 ←	LysR family transcriptional regulator
RA	5,137,332	C→A	7.2%	L90L (CTG→CTT)	PP_4522 ←	LysR family transcriptional regulator
RA	5,137,425:1	+C	100%	coding (177/894 nt)	PP_4522 ←	LysR family transcriptional regulator
RA	5,140,917	G→A	5.7%	I215I (ATC→ATT)	PP_4525 ←	LysR family transcriptional regulator
RA	5,141,207	T→G	6.3%	N119H (AAC→CAC)	PP_4525 ←	LysR family transcriptional regulator
RA	5,141,208	C→A	6.5%	V118V (GTG→GTT)	PP_4525 ←	LysR family transcriptional regulator
RA	5,143,631	A→T	8.2%	A51A (GCT→GCA)	PP_4527 ←	DMT superfamily permease
RA	5,143,634	Δ1 bp	7.7%	coding (150/927 nt)	PP_4527 ←	DMT superfamily permease
RA	5,143,641	C→G	7.9%	G48A (GGC→GCC)	PP_4527 ←	DMT superfamily permease
RA	5,143,646:1	+C	7.8%	coding (138/927 nt)	PP_4527 ←	DMT superfamily permease
RA	5,143,650	A→T	7.5%	L45Q (CTG→CAG)	PP_4527 ←	DMT superfamily permease
RA	5,143,968	C→T	7.4%	R118H (CGC→CAC)	PP_4528 ←	hypothetical protein
RA	5,148,213	C→A	9.1%	intergenic (+16/+57)	mscMB → / ← PP_5695	miniconductance mechanosensitive channel protein/hypothetical protein
RA	5,148,214	T→A	9.1%	intergenic (+17/+56)	mscMB → / ← PP_5695	miniconductance mechanosensitive channel protein/hypothetical protein
RA	5,148,215	T→G	9.1%	intergenic (+18/+55)	mscMB → / ← PP_5695	miniconductance mechanosensitive channel protein/hypothetical protein
RA	5,149,436	C→G	10.0%	intergenic (‑422/+26)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,437	T→G	10.0%	intergenic (‑423/+25)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,440	C→A	12.1%	intergenic (‑426/+22)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,441	C→G	10.7%	intergenic (‑427/+21)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,444	C→T	10.7%	intergenic (‑430/+18)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,157,962:1	+C	100%	coding (58/1833 nt)	PP_4542 →	ABC transporter ATP‑binding protein/permease
RA	5,166,530	C→T	7.8%	L450L (CTG→CTA) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,166,531	A→G	7.7%	L450P (CTG→CCG) ‡	hrpA ←	ATP‑dependent helicase HrpA
RA	5,196,069:1	+C	7.3%	coding (446/690 nt)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,196,071	G→C	7.3%	S148R (AGC→AGG)	ybgJ ←	allophanate hydrolase subunit 1
RA	5,200,456	A→G	10.4%	F183L (TTC→CTC)	yafJ ←	amidotransferase
RA	5,212,487	A→G	7.8%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	7.9%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	8.0%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	8.0%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,228,129	C→T	7.2%	S310S (TCG→TCA)	PP_4606 ←	ferric siderophore receptor
RA	5,233,543	T→C	6.9%	V136A (GTC→GCC)	PP_4611 →	ECF family RNA polymerase sigma‑70 factor
RA	5,264,290:1	+T	9.5%	intergenic (‑44/+40)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,264,293	T→G	9.8%	intergenic (‑47/+37)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,264,296	C→A	9.8%	intergenic (‑50/+34)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,264,299	Δ1 bp	9.5%	intergenic (‑53/+31)	zinU ← / ← PP_4640	P‑loop guanosine triphosphatase‑dependent zinc chaperone/hypothetical protein
RA	5,272,965	C→G	6.2%	L38V (CTA→GTA)	rlmG →	ribosomal RNA large subunit methyltransferase G
RA	5,277,005:1	+C	100%	intergenic (‑309/‑35)	cioA ← / → PP_4652	cyanide insensitive ubiquinol oxidase subunit I/membrane protein
RA	5,298,506	T→C	11.3%	E532E (GAA→GAG)	recD ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
RA	5,318,949	A→G	6.0%	L142P (CTG→CCG)	ilvI ←	acetohydroxybutanoate synthase/acetolactate synthase
RA	5,338,050	C→G	7.8%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,053	C→G	8.0%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,359,064	T→A	5.0%	E402D (GAA→GAT)	nusA ←	transcription termination/antitermination factor L
RA	5,361,071	A→T	13.8%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,072	A→T	13.7%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,376,873	T→C	100%	D231G (GAC→GGC)	dnaK ←	chaperone protein DnaK
RA	5,388,019	T→C	7.4%	L510P (CTC→CCC)	dld2 →	D‑lactate dehydrogenase
RA	5,399,365	A→G	8.6%	N60D (AAC→GAC) ‡	PP_4743 →	hypothetical protein
RA	5,399,366	A→T	8.6%	N60I (AAC→ATC) ‡	PP_4743 →	hypothetical protein
RA	5,399,367	C→T	8.7%	N60N (AAC→AAT) ‡	PP_4743 →	hypothetical protein
RA	5,416,662	G→A	9.3%	S341F (TCT→TTT)	gudD ←	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
RA	5,447,367	C→T	6.5%	P291L (CCG→CTG)	hemL →	glutamate‑1‑semialdehyde 2,1‑aminomutase
RA	5,447,371	C→A	7.0%	V292V (GTC→GTA)	hemL →	glutamate‑1‑semialdehyde 2,1‑aminomutase
RA	5,447,372	T→G	7.3%	Y293D (TAC→GAC)	hemL →	glutamate‑1‑semialdehyde 2,1‑aminomutase
RA	5,447,376	A→G	7.0%	Q294R (CAG→CGG)	hemL →	glutamate‑1‑semialdehyde 2,1‑aminomutase
RA	5,452,102	G→C	8.3%	A211A (GCG→GCC)	lnt →	apolipoprotein N‑acyltransferase
RA	5,468,073:1	+A	10.4%	coding (819/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,468,078	Δ1 bp	10.0%	coding (814/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,469,180	A→T	8.8%	L273H (CTC→CAC)	mrdB ←	murein transpeptidase factor
RA	5,469,183	A→T	9.0%	V272E (GTG→GAG)	mrdB ←	murein transpeptidase factor
RA	5,472,797	C→T	7.2%	G8S (GGC→AGC)	rsfS ←	ribosomal silencing factor RsfS
RA	5,478,782	G→C	5.5%	I33M (ATC→ATG)	PP_4816 ←	hypothetical protein
RA	5,482,761	T→C	6.9%	A229A (GCT→GCC)	dusB →	tRNA dihydrouridine synthase DusB
RA	5,482,766	A→C	6.7%	Q231P (CAG→CCG) ‡	dusB →	tRNA dihydrouridine synthase DusB
RA	5,482,767	G→T	7.0%	Q231H (CAG→CAT) ‡	dusB →	tRNA dihydrouridine synthase DusB
RA	5,482,772	G→A	7.1%	R233Q (CGG→CAG)	dusB →	tRNA dihydrouridine synthase DusB
RA	5,485,153	A→G	25.0%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,154	T→C	33.7%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,159	G→A	30.8%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,162	T→C	33.4%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,335	C→G	7.4%	P32R (CCG→CGG)	purD →	phosphoribosylamine‑‑glycine ligase
RA	5,491,483	C→T	6.3%	intergenic (‑19/+33)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,490	G→A	7.3%	intergenic (‑26/+26)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,492	C→G	6.8%	intergenic (‑28/+24)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,494	T→C	6.9%	intergenic (‑30/+22)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,508,231	G→A	11.5%	intergenic (+85/‑165)	cycA → / → urtA	D‑alanine/beta‑alanine/D‑serine/glycine permease/urea ABC transporter substrate‑binding protein
RA	5,515,106	T→C	8.1%	E307G (GAG→GGG) ‡	cbpA ←	curved DNA‑binding protein
RA	5,515,107	C→G	8.2%	E307Q (GAG→CAG) ‡	cbpA ←	curved DNA‑binding protein
RA	5,515,108	G→A	7.9%	S306S (TCC→TCT)	cbpA ←	curved DNA‑binding protein
RA	5,537,058	A→G	17.6%	intergenic (+35/+68)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,061	A→T	24.1%	intergenic (+38/+65)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,537,062	G→C	18.3%	intergenic (+39/+64)	nadE → / ← PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
RA	5,541,039	Δ1 bp	100%	intergenic (‑54/+262)	PP_4872 ← / ← dnaB	hypothetical protein/replicative DNA helicase
RA	5,550,672	T→A	6.1%	L305Q (CTG→CAG)	PP_4881 →	iron ABC transporter substrate‑binding protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,566,413	T→A	8.4%	Q358L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,566,416	T→A	8.5%	Q357L (CAG→CTG)	mutL ←	DNA mismatch repair protein MutL
RA	5,570,177	T→G	12.8%	A24A (GCA→GCC) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,178	G→C	12.7%	A24G (GCA→GGA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,570,179	C→A	12.6%	A24S (GCA→TCA) ‡	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,573,867	A→T	8.4%	A317A (GCA→GCT)	rsgA →	ribosome biogenesis GTPase RsgA
RA	5,586,238	G→A	7.8%	A9V (GCG→GTG)	PP_4913 ←	hypothetical protein
RA	5,602,162	T→A	6.5%	E440D (GAA→GAT)	PP_4924 ←	subtilase family serine protease
RA	5,602,173	T→A	6.3%	I437F (ATC→TTC)	PP_4924 ←	subtilase family serine protease
RA	5,608,293:1	+A	12.8%	intergenic (‑155/+33)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,294	T→A	12.7%	intergenic (‑156/+32)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,300	G→C	12.5%	intergenic (‑162/+26)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,608,307	T→A	11.1%	intergenic (‑169/+19)	cyaB ← / ← waaA	cyclolysin secretion/processing ATP‑binding protein CyaB/3‑deoxy‑D‑manno‑octulosonic acid transferase
RA	5,611,430	T→C	11.6%	F142L (TTC→CTC)	PP_4931 →	hypothetical protein
RA	5,616,994	T→C	10.0%	D156G (GAC→GGC)	msbA ←	lipid A export ATP‑binding/permease MsbA
RA	5,616,997	G→C	10.0%	T155S (ACC→AGC)	msbA ←	lipid A export ATP‑binding/permease MsbA
RA	5,617,000	G→C	10.3%	A154G (GCT→GGT)	msbA ←	lipid A export ATP‑binding/permease MsbA
RA	5,617,003	G→A	10.3%	A153V (GCC→GTC)	msbA ←	lipid A export ATP‑binding/permease MsbA
RA	5,619,683	T→C	100%	H273R (CAC→CGC)	PP_4938 ←	glycosyl transferase
RA	5,622,932	A→C	11.9%	M269R (ATG→AGG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,933	T→A	12.3%	M269L (ATG→TTG) ‡	PP_4941 ←	hypothetical protein
RA	5,622,934	G→T	11.1%	A268A (GCC→GCA)	PP_4941 ←	hypothetical protein
RA	5,635,841	G→A	6.8%	G70D (GGC→GAC)	PP_4948 →	acyl‑CoA dehydrogenase family protein
RA	5,637,130	C→T	6.4%	Q500* (CAA→TAA)	PP_4948 →	acyl‑CoA dehydrogenase family protein
RA	5,637,439	G→A	6.4%	intergenic (+4/‑28)	PP_4948 → / → PP_4949	acyl‑CoA dehydrogenase family protein/TldD/PmbA family peptidase
RA	5,643,261	G→A	8.3%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,262	C→T	8.3%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,263	A→G	8.5%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,267	A→C	8.8%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,270	G→T	8.8%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,274	C→T	8.3%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,275	A→G	8.0%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,276	T→C	7.9%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,290	G→A	8.3%	intergenic (+75/‑48)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,301	C→T	9.5%	intergenic (+86/‑37)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,646,266	A→T	5.1%	D540V (GAC→GTC)	PP_4954 →	membrane protein
RA	5,649,301	T→C	5.5%	H631R (CAT→CGT)	PP_4959 ←	diguanylate cyclase
RA	5,651,374	T→G	12.1%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	12.1%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,626:1	+A	25.0%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	26.1%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	23.6%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,182	G→T	8.6%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,667,258	G→T	7.9%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	8.5%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,138	A→G	5.7%	D255G (GAC→GGC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,142	G→T	5.6%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,143	A→C	5.3%	I257L (ATC→CTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,147	C→T	5.7%	A258V (GCC→GTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,685,900	G→C	6.9%	P331P (CCC→CCG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,902	G→C	6.9%	P331A (CCC→GCC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,909	G→C	6.7%	R328R (CGC→CGG) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,685,911	G→C	6.4%	R328G (CGC→GGC) ‡	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,711,857	G→A	11.3%	E232E (GAG→GAA)	ubiE →	ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE
RA	5,711,864	T→C	10.9%	F235L (TTC→CTC)	ubiE →	ubiquinone/menaquinone biosynthesis C‑methyltransferase UbiE
RA	5,714,353	G→A	9.7%	R36H (CGT→CAT)	hisI →	phosphoribosyl‑AMP cyclohydrolase
RA	5,725,055	G→A	8.1%	G637G (GGC→GGT)	opgH ←	glucans biosynthesis glucosyltransferase H
RA	5,732,255	Δ1 bp	5.6%	coding (301/1206 nt)	hutI ←	imidazolonepropionase
RA	5,732,263	A→G	5.3%	I98T (ATC→ACC)	hutI ←	imidazolonepropionase
RA	5,732,271:1	+G	5.3%	coding (285/1206 nt)	hutI ←	imidazolonepropionase
RA	5,732,273	C→A	5.3%	G95C (GGT→TGT)	hutI ←	imidazolonepropionase
RA	5,737,599	G→C	7.4%	intergenic (‑154/+48)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,737,602	G→C	10.9%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,740,457	G→A	17.0%	intergenic (+22/+49)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,467	T→G	36.9%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	25.2%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	23.9%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	26.8%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	14.7%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,743,349	A→G	6.9%	intergenic (‑182/+65)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,351	A→C	6.9%	intergenic (‑184/+63)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,352	G→T	6.9%	intergenic (‑185/+62)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,360	C→T	6.6%	intergenic (‑193/+54)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,362	T→C	6.2%	intergenic (‑195/+52)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,365	A→G	6.4%	intergenic (‑198/+49)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,373	A→C	7.7%	intergenic (‑206/+41)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,374	G→T	6.5%	intergenic (‑207/+40)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,375	A→G	6.4%	intergenic (‑208/+39)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,376	C→T	6.5%	intergenic (‑209/+38)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,767,350	C→A	8.5%	M1174I (ATG→ATT) ‡	PP_5060 ←	hypothetical protein
RA	5,767,351	A→T	8.1%	M1174K (ATG→AAG) ‡	PP_5060 ←	hypothetical protein
RA	5,767,352	T→G	8.2%	M1174L (ATG→CTG) ‡	PP_5060 ←	hypothetical protein
RA	5,790,159	A→T	7.0%	intergenic (+38/+30)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,791,128	A→T	6.8%	I197N (ATC→AAC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,791,129	T→C	5.9%	I197V (ATC→GTC) ‡	hemE ←	uroporphyrinogen decarboxylase
RA	5,793,885	A→G	7.0%	F1339L (TTT→CTT)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,793,887	A→T	6.7%	L1338Q (CTG→CAG)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,793,889	C→T	6.8%	K1337K (AAG→AAA)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,797,312	G→T	5.3%	R196R (CGC→CGA)	gltB ←	L‑glutamate synthase subunit alpha
RA	5,800,955	G→A	7.1%	D7D (GAC→GAT)	aroB ←	3‑dehydroquinate synthase
RA	5,815,544	A→G	13.1%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,851,171	T→A	11.8%	intergenic (+34/+34)	ilvD → / ← PP_5129	dihydroxy‑acid dehydratase/hypothetical protein
RA	5,856,777	C→T	5.2%	A235V (GCC→GTC)	PP_5133 →	membrane protein
RA	5,856,780	T→G	5.2%	V236G (GTG→GGG)	PP_5133 →	membrane protein
RA	5,856,783	C→A	5.2%	P237H (CCC→CAC)	PP_5133 →	membrane protein
RA	5,856,786	A→G	5.2%	D238G (GAC→GGC)	PP_5133 →	membrane protein
RA	5,864,765	G→A	6.4%	A462A (GCC→GCT)	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,874,819	G→T	10.6%	S451* (TCG→TAG) ‡	ilvA‑II ←	threonine deaminase
RA	5,874,820	A→C	11.1%	S451A (TCG→GCG) ‡	ilvA‑II ←	threonine deaminase
RA	5,883,595	C→G	7.6%	A60G (GCC→GGC)	PP_5157 →	hypothetical protein
RA	5,887,056	T→G	12.7%	intergenic (‑41/‑89)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,059	C→T	11.0%	intergenic (‑44/‑86)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,060	G→C	11.1%	intergenic (‑45/‑85)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,061	A→G	10.3%	intergenic (‑46/‑84)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,887,064	C→A	10.2%	intergenic (‑49/‑81)	PP_5161 ← / → PP_5162	lysophospholipase/hypothetical protein
RA	5,896,312	A→G	5.8%	intergenic (‑137/+48)	cysU ← / ← sbp‑II	sulfate ABC transporter permease CysT/sulfate ABC transporter substrate‑binding protein
RA	5,903,164	G→T	22.4%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	19.6%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,916,535	C→T	7.8%	D98N (GAT→AAT)	argE ←	acetylornithine deacetylase
RA	5,917,643	A→T	7.1%	Q234L (CAG→CTG)	ygiF →	thiamine triphosphatase
RA	5,917,649	T→C	7.5%	L236P (CTG→CCG) ‡	ygiF →	thiamine triphosphatase
RA	5,917,650	G→C	7.8%	L236L (CTG→CTC) ‡	ygiF →	thiamine triphosphatase
RA	5,917,651	G→A	7.8%	G237S (GGC→AGC)	ygiF →	thiamine triphosphatase
RA	5,927,510	G→A	6.5%	L129L (CTG→TTG)	PP_5195 ←	iron ABC transporter permease
RA	5,940,938	C→T	7.0%	A259A (GCC→GCT)	yhhJ →	translation‑like protein
RA	5,957,001	T→A	6.4%	H135Q (CAT→CAA)	cyaA →	adenylate cyclase
RA	5,959,996	A→T	8.4%	noncoding (73/103 nt)	PP_mr63 ←	rnk_pseudo ncRNA
RA	5,962,273	A→C	6.0%	D390A (GAC→GCC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,276	G→T	7.1%	G391V (GGC→GTC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,962,531	G→C	7.3%	D70H (GAC→CAC)	dapF →	diaminopimelate epimerase
RA	5,966,333	A→T	5.0%	intergenic (‑402/+28)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,970,304	C→G	6.0%	W330C (TGG→TGC)	PP_5236 ←	hypothetical protein
RA	5,980,171	T→C	6.0%	A272A (GCT→GCC)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,986,861	C→T	100%	intergenic (+141/‑58)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,988,889	C→A	23.9%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	29.8%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	29.8%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	30.5%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	30.5%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,994,277	T→C	6.7%	V335A (GTG→GCG)	PP_5251 →	transporter
RA	6,000,817	A→G	6.0%	Q451R (CAG→CGG)	PP_5256 →	cyclic nucleotide‑binding protein
RA	6,013,836	G→A	18.2%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	18.2%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,845	G→C	18.2%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	19.2%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,847	C→T	19.0%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,852	A→G	16.7%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,853	C→A	16.7%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	16.7%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,861	C→T	14.8%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	14.3%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,023,159	G→A	10.4%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,160	T→C	10.3%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,042,337	G→C	7.3%	E92Q (GAA→CAA) ‡	PP_5295 →	hypothetical protein
RA	6,042,339	A→T	9.1%	E92D (GAA→GAT) ‡	PP_5295 →	hypothetical protein
RA	6,042,341	G→C	9.3%	C93S (TGC→TCC)	PP_5295 →	hypothetical protein
RA	6,042,454	G→C	100%	A131P (GCC→CCC)	PP_5295 →	hypothetical protein
RA	6,043,666	T→A	10.4%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,049,795	G→A	7.2%	S219S (TCG→TCA)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,050,872	G→A	9.0%	P578P (CCG→CCA)	spoT →	bifunctional (p)ppGpp synthase/hydrolase
RA	6,075,747	G→C	7.4%	A272G (GCC→GGC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,080,988	T→A	11.9%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,080,989	T→A	12.0%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,087,118	G→A	100%	A214T (GCC→ACC)	oruR →	ornithine utilization transcriptional regulator
RA	6,104,053	T→A	11.5%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,054	T→A	11.5%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,108,335	G→C	7.5%	W23C (TGG→TGC)	PP_5358 →	hypothetical protein
RA	6,129,170	C→T	7.3%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,173	A→T	7.4%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,176	A→G	7.6%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,186	G→T	6.9%	intergenic (+48/+19)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,143,635	G→A	100%	P72P (CCG→CCA)	cusF →	copper efflux protein
RA	6,146,373	G→A	8.0%	G326G (GGC→GGT)	PP_5392 ←	WD40/YVTN repeat‑containing protein
RA	6,177,324	C→T	8.0%	G54D (GGT→GAT)	atpG ←	ATP synthase subunit gamma
RA	6,177,327	A→G	7.8%	I53T (ATC→ACC)	atpG ←	ATP synthase subunit gamma
RA	6,177,331	C→T	9.8%	V52M (GTG→ATG)	atpG ←	ATP synthase subunit gamma

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 63729	53 (1.030)	5 (0.100)	5/244	NT	9.1%	coding (748/858 nt)	PP_0054	membrane protein
	?	NC_002947	= 63769	50 (1.030)					coding (788/858 nt)	PP_0054	membrane protein
*	?	NC_002947	80983 =	48 (0.930)	4 (0.080)	4/240	NT	8.7%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	40 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
*	?	NC_002947	86825 =	51 (0.990)	3 (0.060) +A	3/258	NT	5.8%	intergenic (‑108/+37)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	2301510 =	48 (0.930)					intergenic (‑154/‑177)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	= 94644	55 (1.060)	3 (0.060)	3/242	NT	5.3%	coding (442/489 nt)	PP_0085	hypothetical protein
	?	NC_002947	= 94713	55 (1.140)					coding (373/489 nt)	PP_0085	hypothetical protein
*	?	NC_002947	113621 =	54 (1.050)	4 (0.080)	4/248	NT	7.3%	coding (285/738 nt)	PP_0107	hypothetical protein
	?	NC_002947	113680 =	50 (1.020)					coding (344/738 nt)	PP_0107	hypothetical protein
*	?	NC_002947	= 156459	48 (0.930)	4 (0.080)	4/246	NT	8.1%	coding (1267/1308 nt)	citN	citrate transporter
	?	NC_002947	= 156485	45 (0.920)					coding (1241/1308 nt)	citN	citrate transporter
*	?	NC_002947	222422 =	70 (1.360)	4 (0.080)	4/248	NT	6.1%	coding (277/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
	?	NC_002947	222477 =	56 (1.140)					coding (332/1020 nt)	PP_0170	ABC transporter substrate‑binding protein
*	?	NC_002947	= 312464	49 (0.950)	6 (0.120)	6/246	NT	10.9%	coding (748/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312481	52 (1.060)					coding (731/831 nt)	fdhD	protein sulfur transferase
*	?	NC_002947	316761 =	53 (1.030)	3 (0.060)	3/246	NT	5.9%	coding (1170/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	316840 =	45 (0.920)					coding (1091/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
*	?	NC_002947	= 330293	54 (1.050)	4 (0.080)	3/252	NT	8.6%	coding (183/2298 nt)	PP_0272	ferric siderophore receptor
	?	NC_002947	= 330340	33 (0.660)					coding (230/2298 nt)	PP_0272	ferric siderophore receptor
*	?	NC_002947	379770 =	44 (0.850)	4 (0.080)	4/248	NT	8.3%	coding (67/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	379814 =	47 (0.950)					coding (111/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
*	?	NC_002947	401307 =	21 (0.410)	9 (0.180)	6/248	NT	19.6%	coding (893/1059 nt)	PP_0334	transposase
	?	NC_002947	401378 =	54 (1.100)					coding (964/1059 nt)	PP_0334	transposase
*	?	NC_002947	= 404617	49 (0.950)	3 (0.060)	3/246	NT	6.0%	coding (1440/2691 nt)	PP_0337	sensory box protein
	?	NC_002947	= 404657	47 (0.960)					coding (1400/2691 nt)	PP_0337	sensory box protein
*	?	NC_002947	= 454696	53 (1.030)	4 (0.080)	4/242	NT	7.1%	intergenic (‑36/+120)	PP_5444/PP_0375	hypothetical protein/prolyl oligopeptidase family protein
	?	NC_002947	= 454719	56 (1.170)					intergenic (‑59/+97)	PP_5444/PP_0375	hypothetical protein/prolyl oligopeptidase family protein
*	?	NC_002947	= 492913	55 (1.060)	3 (0.060)	3/246	NT	5.2%	coding (363/1020 nt)	PP_0405	hypothetical protein
	?	NC_002947	= 492925	58 (1.190)					coding (375/1020 nt)	PP_0405	hypothetical protein
*	?	NC_002947	= 530409	73 (1.410)	4 (0.080)	4/248	NT	5.6%	coding (323/960 nt)	birA	bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
	?	NC_002947	= 530450	65 (1.320)					coding (364/960 nt)	birA	bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
*	?	NC_002947	577883 =	39 (0.760)	4 (0.080)	4/250	NT	9.2%	coding (2920/3069 nt)	fdoG	formate dehydrogenase‑O major subunit
	?	NC_002947	577910 =	41 (0.830)					coding (2947/3069 nt)	fdoG	formate dehydrogenase‑O major subunit
*	?	NC_002947	= 581902	37 (0.720)	3 (0.060)	3/250	NT	7.2%	coding (1192/1428 nt)	selA	selenocysteine synthase
	?	NC_002947	= 581933	42 (0.850)					coding (1223/1428 nt)	selA	selenocysteine synthase
*	?	NC_002947	= 603905	56 (1.080)	3 (0.060)	3/246	NT	5.2%	coding (210/477 nt)	ribH	6,7‑dimethyl‑8‑ribityllumazine synthase
	?	NC_002947	= 603932	57 (1.170)					coding (237/477 nt)	ribH	6,7‑dimethyl‑8‑ribityllumazine synthase
*	?	NC_002947	= 610297	41 (0.790)	3 (0.060)	3/246	NT	6.8%	coding (549/1926 nt)	PP_0525	B12 family TonB‑dependent receptor
	?	NC_002947	= 610328	43 (0.880)					coding (518/1926 nt)	PP_0525	B12 family TonB‑dependent receptor
*	?	NC_002947	= 621350	59 (1.140)	5 (0.100)	5/246	NT	7.8%	coding (480/2178 nt)	PP_0535	ferric siderophore receptor
	?	NC_002947	= 621371	63 (1.290)					coding (501/2178 nt)	PP_0535	ferric siderophore receptor
*	?	NC_002947	673259 =	43 (0.830)	4 (0.080)	4/248	NT	7.6%	coding (261/777 nt)	PP_0574	LuxR family transcriptional regulator
	?	NC_002947	673325 =	56 (1.140)					coding (195/777 nt)	PP_0574	LuxR family transcriptional regulator
*	?	NC_002947	683421 =	44 (0.850)	4 (0.080)	3/250	NT	9.6%	intergenic (‑149/+19)	PP_0584/PP_0585	methyl‑accepting chemotaxis transducer/MerR family metal‑sensitive transcriptional regulator
	?	NC_002947	683473 =	33 (0.660)					coding (378/411 nt)	PP_0585	MerR family metal‑sensitive transcriptional regulator
*	?	NC_002947	693811 =	39 (0.760)	4 (0.080)	4/246	NT	10.1%	coding (231/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	693892 =	34 (0.700)					coding (150/918 nt)	PP_0595	LysR family transcriptional regulator
*	?	NC_002947	= 693838	40 (0.770)	4 (0.080)	4/252	NT	9.7%	coding (204/918 nt)	PP_0595	LysR family transcriptional regulator
	?	NC_002947	= 693882	36 (0.720)					coding (160/918 nt)	PP_0595	LysR family transcriptional regulator
*	?	NC_002947	= 694954	41 (0.790)	3 (0.060)	3/246	NT	7.5%	coding (795/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase
	?	NC_002947	= 694981	35 (0.720)					coding (822/1347 nt)	PP_0596	omega‑amino acid‑‑pyruvate aminotransferase
*	?	NC_002947	724777 =	51 (0.990)	3 (0.060)	3/252	NT	5.8%	coding (1122/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	724805 =	48 (0.960)					coding (1094/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 734329	43 (0.830)	3 (0.060)	3/238	NT	6.7%	coding (988/1296 nt)	ndh	NADH dehydrogenase
	?	NC_002947	= 734369	44 (0.930)					coding (948/1296 nt)	ndh	NADH dehydrogenase
*	?	NC_002947	760621 =	42 (0.810)	4 (0.080)	4/244	NT	8.4%	coding (919/1386 nt)	PP_0652	gluconate transporter
	?	NC_002947	760674 =	48 (0.990)					coding (866/1386 nt)	PP_0652	gluconate transporter
*	?	NC_002947	= 769351	39 (0.760)	3 (0.060)	3/244	NT	8.6%	coding (1429/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	= 769381	27 (0.560)					intergenic (+19/‑27)	mmuP/PP_0661	S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR
*	?	NC_002947	= 772928	46 (0.890)	5 (0.100)	4/252	NT	9.7%	coding (591/1044 nt)	PP_0664	homoserine dehydrogenase
	?	NC_002947	= 772998	49 (0.980)					coding (661/1044 nt)	PP_0664	homoserine dehydrogenase
*	?	NC_002947	810546 =	48 (0.930)	3 (0.060)	3/252	NT	6.0%	coding (241/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
	?	NC_002947	810588 =	47 (0.940)					coding (283/456 nt)	rimI	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
*	?	NC_002947	= 823602	58 (1.120)	4 (0.080)	4/252	NT	6.7%	coding (1002/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
	?	NC_002947	= 823631	56 (1.120)					coding (973/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
*	?	NC_002947	= 832534	45 (0.870)	3 (0.060)	3/244	NT	6.5%	coding (297/1098 nt)	PP_0716	HlyD family secretion protein
	?	NC_002947	= 832564	44 (0.910)					coding (327/1098 nt)	PP_0716	HlyD family secretion protein
*	?	NC_002947	842007 =	56 (1.080)	4 (0.080)	4/248	NT	7.4%	coding (1043/1722 nt)	PP_0725	TPR repeat‑containing protein
	?	NC_002947	842073 =	47 (0.950)					coding (977/1722 nt)	PP_0725	TPR repeat‑containing protein
*	?	NC_002947	877021 =	51 (0.990)	4 (0.090)	4/236	NT	7.5%	coding (138/999 nt)	rsmC	16S rRNA methyltransferase
	?	NC_002947	877102 =	53 (1.130)					coding (57/999 nt)	rsmC	16S rRNA methyltransferase
*	?	NC_002947	= 937436	44 (0.850)	4 (0.080)	4/250	NT	8.8%	coding (8186/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937482	41 (0.830)					coding (8140/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 937856	48 (0.930)	4 (0.080)	4/248	NT	7.9%	coding (7766/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937891	48 (0.970)					coding (7731/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 949735	54 (1.050)	3 (0.060)	3/242	NT	5.7%	intergenic (+70/‑490)	dsbB/cyoA	disulfide bond formation protein B/cytochrome bo terminal oxidase subunit II
	?	NC_002947	= 949778	49 (1.020)					intergenic (+113/‑447)	dsbB/cyoA	disulfide bond formation protein B/cytochrome bo terminal oxidase subunit II
*	?	NC_002947	958572 =	43 (0.830)	5 (0.100)	5/246	NT	10.1%	coding (27/564 nt)	PP_0820	acetyltransferase
	?	NC_002947	958667 =	48 (0.980)					coding (122/564 nt)	PP_0820	acetyltransferase
*	?	NC_002947	= 975190	28 (0.540)	5 (0.110)	4/220	NT	17.0%	intergenic (+39/+130)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
	?	NC_002947	= 975222	25 (0.570)					intergenic (+71/+98)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
*	?	NC_002947	= 991688	60 (1.160)	5 (0.100)	5/244	NT	7.7%	coding (310/1464 nt)	der	GTPase Der
	?	NC_002947	= 991712	64 (1.320)					coding (334/1464 nt)	der	GTPase Der
*	?	NC_002947	1033743 =	45 (0.870)	3 (0.060)	3/246	NT	6.2%	coding (363/582 nt)	PP_0891	hypothetical protein
	?	NC_002947	1033828 =	48 (0.980)					coding (448/582 nt)	PP_0891	hypothetical protein
*	?	NC_002947	1071845 =	54 (1.050)	5 (0.100)	5/246	NT	10.0%	intergenic (‑25/+102)	PP_0929/gatB	lipoprotein/aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B
	?	NC_002947	1071908 =	39 (0.800)					intergenic (‑88/+39)	PP_0929/gatB	lipoprotein/aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit B
*	?	NC_002947	= 1079366	60 (1.160)	4 (0.080)	4/246	NT	6.7%	coding (561/1458 nt)	rng	endoribonuclease G
	?	NC_002947	= 1079400	55 (1.130)					coding (595/1458 nt)	rng	endoribonuclease G
*	?	NC_002947	1138531 =	39 (0.760)	3 (0.070)	3/232	NT	8.1%	intergenic (‑62/+103)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
	?	NC_002947	1138620 =	33 (0.720)					intergenic (‑151/+14)	arcC/arcB	carbamate kinase/ornithine carbamoyltransferase
*	?	NC_002947	= 1167195	43 (0.830)	4 (0.080)	4/246	NT	8.3%	coding (139/729 nt)	pgl	6‑phosphogluconolactonase
	?	NC_002947	= 1167220	48 (0.980)					coding (164/729 nt)	pgl	6‑phosphogluconolactonase
*	?	NC_002947	1191508 =	56 (1.080)	4 (0.090) +CTGGTTCTGAAACCAGTGA	4/222	NT	8.9%	intergenic (+64/+66)	xcpX/upxB	type II secretion system protein K/phosphatase
	?	NC_002947	= 5207717	40 (0.770)					intergenic (+55/+59)	PP_4588/PP_4589	nitroreductase family oxidoreductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	1223650 =	56 (1.080)	4 (0.080)	3/248	NT	7.0%	coding (396/771 nt)	gltL	glutamate/aspartate ABC transporter ATP binding protein
	?	NC_002947	1223707 =	53 (1.080)					coding (339/771 nt)	gltL	glutamate/aspartate ABC transporter ATP binding protein
*	?	NC_002947	1296784 =	NA (NA)	7 (0.140)	5/246	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1311719	39 (0.760)	6 (0.120) +AC	4/256	NT	16.7%	intergenic (‑187/+91)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	5594111 =	22 (0.430)					intergenic (‑58/+87)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	= 1337176	56 (1.080)	3 (0.060)	3/248	NT	5.0%	coding (549/630 nt)	gstA	glutathione S‑transferase GstA
	?	NC_002947	= 1337223	60 (1.220)					coding (596/630 nt)	gstA	glutathione S‑transferase GstA
*	?	NC_002947	= 1375310	51 (0.990)	3 (0.060)	3/252	NT	6.3%	coding (930/1911 nt)	kup	potassium transport system protein Kup
	?	NC_002947	= 1375342	40 (0.800)					coding (962/1911 nt)	kup	potassium transport system protein Kup
*	?	NC_002947	1401051 =	16 (0.310)	3 (0.060)	3/248	NT	14.5%	coding (46/648 nt)	queE	7‑carboxy‑7‑deazaguanine synthase
	?	NC_002947	1401099 =	20 (0.410)					coding (94/648 nt)	queE	7‑carboxy‑7‑deazaguanine synthase
*	?	NC_002947	1407830 =	47 (0.910)	4 (0.080)	4/248	NT	9.9%	coding (283/1509 nt)	PP_1230	hypothetical protein
	?	NC_002947	1407882 =	28 (0.570)					coding (335/1509 nt)	PP_1230	hypothetical protein
*	?	NC_002947	1410031 =	48 (0.930)	5 (0.100)	4/250	NT	10.6%	coding (701/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	1410076 =	38 (0.770)					coding (746/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
*	?	NC_002947	= 1413510	63 (1.220)	7 (0.150)	6/242	NT	10.8%	coding (387/474 nt)	PP_1235	AhpC/TSA family protein
	?	NC_002947	= 1413530	57 (1.190)					coding (367/474 nt)	PP_1235	AhpC/TSA family protein
*	?	NC_002947	1419549 =	24 (0.460)	6 (0.150)	5/202	NT	35.7%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419637 =	3 (0.070)					intergenic (‑126/+10)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1426800 =	NA (NA)	3 (0.060)	3/254	NT	NA	coding (698/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	1426860 =	NA (NA)					coding (758/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1445921 =	60 (1.160)	4 (0.080)	3/252	NT	6.7%	coding (19/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1445958 =	54 (1.080)					coding (56/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1472511 =	56 (1.080)	3 (0.060)	3/248	NT	5.4%	coding (316/1491 nt)	alg8	glycosyltransferase Alg8
	?	NC_002947	1472544 =	51 (1.040)					coding (283/1491 nt)	alg8	glycosyltransferase Alg8
*	?	NC_002947	= 1478911	50 (0.970)	3 (0.060)	3/248	NT	6.1%	intergenic (+170/‑26)	PP_1291/moaC	PhoH family protein/cyclic pyranopterin monophosphate synthase accessory protein
	?	NC_002947	= 1478933	45 (0.910)					intergenic (+192/‑4)	PP_1291/moaC	PhoH family protein/cyclic pyranopterin monophosphate synthase accessory protein
*	?	NC_002947	1602950 =	39 (0.760)	4 (0.080)	4/240	NT	9.8%	coding (797/1215 nt)	PP_5469	SAM‑dependent methyltransferase
	?	NC_002947	1603031 =	38 (0.800)					coding (878/1215 nt)	PP_5469	SAM‑dependent methyltransferase
*	?	NC_002947	= 1607270	49 (0.950)	3 (0.060)	3/246	NT	5.9%	coding (264/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
	?	NC_002947	= 1607299	49 (1.000)					coding (235/888 nt)	PP_1408	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase
*	?	NC_002947	1607679 =	79 (1.530)	4 (0.080)	3/246	NT	5.6%	intergenic (‑146/+198)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
	?	NC_002947	1607722 =	60 (1.230)					intergenic (‑189/+155)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
*	?	NC_002947	1656936 =	60 (1.160)	4 (0.080)	4/250	NT	6.9%	coding (1558/1698 nt)	PP_1450	TPS family activation/secretion protein
	?	NC_002947	1656995 =	50 (1.010)					coding (1499/1698 nt)	PP_1450	TPS family activation/secretion protein
*	?	NC_002947	= 1694846	48 (0.930)	4 (0.080)	3/248	NT	7.6%	coding (812/1275 nt)	wspC	biofilm formation methyltransferase WspC
	?	NC_002947	= 1694865	52 (1.060)					coding (831/1275 nt)	wspC	biofilm formation methyltransferase WspC
*	?	NC_002947	= 1701464	57 (1.100)	3 (0.060)	3/246	NT	5.0%	coding (932/1023 nt)	prfB	peptide chain release factor 2
	?	NC_002947	= 1701496	59 (1.210)					coding (964/1023 nt)	prfB	peptide chain release factor 2
*	?	NC_002947	= 1735443	44 (0.850)	3 (0.060)	3/250	NT	6.4%	coding (1081/1206 nt)	csdA	cysteine desulfurase
	?	NC_002947	= 1735471	45 (0.910)					coding (1053/1206 nt)	csdA	cysteine desulfurase
*	?	NC_002947	1741391 =	35 (0.680)	4 (0.080)	4/246	NT	10.0%	coding (522/753 nt)	PP_1538	hypothetical protein
	?	NC_002947	1741436 =	39 (0.800)					coding (477/753 nt)	PP_1538	hypothetical protein
*	?	NC_002947	= 1790646	32 (0.620)	4 (0.080)	4/250	NT	11.3%	coding (576/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
	?	NC_002947	= 1790684	32 (0.640)					coding (614/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
*	?	NC_002947	= 1875246	57 (1.100)	3 (0.060)	3/252	NT	5.6%	coding (505/567 nt)	PP_1680	alpha‑ribazole‑5'‑phosphate phosphatase
	?	NC_002947	= 1875287	46 (0.920)					coding (546/567 nt) coding (11/756 nt)	PP_1680 cobS	alpha‑ribazole‑5'‑phosphate phosphatase adenosylcobinamide‑GDP ribazoletransferase
*	?	NC_002947	1899206 =	43 (0.830)	3 (0.060)	3/260	NT	7.4%	intergenic (+276/‑244)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899290 =	32 (0.620)					intergenic (+360/‑160)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1928721 =	64 (1.240)	3 (0.060)	3/246	NT	5.8%	coding (1371/2154 nt)	PP_1728	membrane protein
	?	NC_002947	1928791 =	37 (0.760)					coding (1301/2154 nt)	PP_1728	membrane protein
*	?	NC_002947	1978503 =	57 (1.100)	4 (0.080)	4/250	NT	7.0%	coding (2167/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1978559 =	52 (1.050)					coding (2223/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	NC_002947	2032810 =	NA (NA)	3 (0.060)	3/248	NT	16.4%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032835 =	16 (0.310)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
*	?	NC_002947	= 2047257	52 (1.010)	3 (0.060)	3/250	NT	5.5%	coding (764/1197 nt)	PP_1820	benzoate transport protein
	?	NC_002947	= 2047296	53 (1.070)					coding (725/1197 nt)	PP_1820	benzoate transport protein
*	?	NC_002947	= 2050897	54 (1.050)	3 (0.060)	3/250	NT	5.6%	coding (106/321 nt)	PP_1825	hypothetical protein
	?	NC_002947	= 2050975	49 (0.990)					coding (28/321 nt)	PP_1825	hypothetical protein
*	?	NC_002947	2085428 =	61 (1.180)	5 (0.100)	4/244	NT	10.2%	intergenic (+137/‑458)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	2085520 =	31 (0.640)					intergenic (+229/‑366)	PP_1864/PP_1865	hypothetical protein/transposase
*	?	NC_002947	= 2086250	NA (NA)	4 (0.080)	4/244	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2089797	42 (0.810)	5 (0.100)	4/244	NT	10.3%	coding (230/756 nt)	PP_1867	hypothetical protein
	?	NC_002947	= 2089811	48 (0.990)					coding (244/756 nt)	PP_1867	hypothetical protein
*	?	NC_002947	2099960 =	19 (0.370)	4 (0.090)	4/214	NT	17.9%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100055 =	21 (0.490)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2101481 =	36 (0.700)	3 (0.060)	3/236	NT	8.6%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101525 =	31 (0.660)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
*	?	NC_002947	2116591 =	64 (1.240)	4 (0.080)	4/252	NT	5.8%	coding (267/2466 nt)	PP_1884	hypothetical protein
	?	NC_002947	2116623 =	68 (1.360)					coding (299/2466 nt)	PP_1884	hypothetical protein
*	?	NC_002947	2129966 =	54 (1.050)	5 (0.100)	5/244	NT	10.1%	coding (2233/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2130009 =	38 (0.780)					coding (2190/2496 nt)	fimD	type I pili subunit FimD
*	?	NC_002947	2295775 =	87 (1.680)	3 (0.070)	3/212	NT	5.2%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2295860 =	39 (0.930)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	2301453 =	0 (0.000)	82 (1.630)	66/254	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	83 (1.630)	68/256	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2303099 =	86 (1.670)	5 (0.100)	3/246	NT	5.6%	intergenic (‑184/+111)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	2303144 =	86 (1.760)					intergenic (‑229/+66)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	2306873 =	95 (1.840)	5 (0.100)	5/250	NT	5.6%	coding (757/1077 nt)	PP_2029	von Willebrand factor type A domain‑containing protein
	?	NC_002947	2306910 =	77 (1.550)					coding (720/1077 nt)	PP_2029	von Willebrand factor type A domain‑containing protein
*	?	NC_002947	= 2309182	94 (1.820)	5 (0.100)	5/248	NT	5.2%	coding (840/960 nt)	PP_2032	ATPase
	?	NC_002947	= 2309217	92 (1.870)					coding (805/960 nt)	PP_2032	ATPase
*	?	NC_002947	2357050 =	97 (1.880)	5 (0.100)	4/240	NT	5.2%	coding (328/387 nt)	PP_2071	hypothetical protein
	?	NC_002947	2357122 =	91 (1.910)					coding (256/387 nt)	PP_2071	hypothetical protein
*	?	NC_002947	2363970 =	94 (1.820)	6 (0.120)	6/244	NT	6.6%	intergenic (‑94/+239)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase
	?	NC_002947	2364009 =	81 (1.670)					intergenic (‑133/+200)	PP_2076/lysA‑I	hypothetical protein/diaminopimelate decarboxylase
*	?	NC_002947	2373098 =	96 (1.860)	5 (0.100)	4/248	NT	5.3%	intergenic (‑120/‑72)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase
	?	NC_002947	2373130 =	87 (1.770)					intergenic (‑152/‑40)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase
*	?	NC_002947	2384162 =	77 (1.490)	6 (0.120)	6/246	NT	7.2%	coding (980/1236 nt)	nasA	nitrate transporter
	?	NC_002947	2384196 =	82 (1.680)					coding (946/1236 nt)	nasA	nitrate transporter
*	?	NC_002947	2392868 =	83 (1.610)	4 (0.080)	4/246	NT	5.0%	coding (1397/2403 nt)	PP_2097	sensory box protein
	?	NC_002947	2392908 =	72 (1.470)					coding (1437/2403 nt)	PP_2097	sensory box protein
*	?	NC_002947	2394741 =	101 (1.960)	5 (0.100)	4/246	NT	5.2%	coding (652/1413 nt)	dacB	D‑alanyl‑D‑alanine carboxypeptidase
	?	NC_002947	2394771 =	87 (1.780)					coding (622/1413 nt)	dacB	D‑alanyl‑D‑alanine carboxypeptidase
*	?	NC_002947	2403799 =	73 (1.410)	5 (0.100)	4/240	NT	6.6%	coding (426/1209 nt)	PP_2106	ammonium transporter
	?	NC_002947	2403860 =	75 (1.570)					coding (487/1209 nt)	PP_2106	ammonium transporter
*	?	NC_002947	2421704 =	130 (2.520)	9 (0.190)	8/244	NT	7.4%	coding (515/540 nt)	moaB‑I	molybdenum cofactor biosynthesis protein B
	?	NC_002947	2421752 =	103 (2.130)					coding (40/1227 nt)	moeA	molybdenum::molybdopterin ligase
*	?	NC_002947	= 2472140	36 (0.700)	8 (0.220)	6/182	NT	20.7%	intergenic (+44/+105)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	= 2472186	36 (1.000)					intergenic (+90/+59)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
*	?	NC_002947	= 2480722	74 (1.430)	5 (0.100)	5/248	NT	6.4%	coding (625/705 nt)	PP_2175	3‑oxoacyl‑ACP reductase
	?	NC_002947	= 2480755	76 (1.540)					coding (592/705 nt)	PP_2175	3‑oxoacyl‑ACP reductase
*	?	NC_002947	2506321 =	80 (1.550)	4 (0.080)	4/252	NT	5.3%	coding (921/1107 nt)	PP_2199	hypothetical protein
	?	NC_002947	2506367 =	65 (1.300)					coding (967/1107 nt)	PP_2199	hypothetical protein
*	?	NC_002947	= 2513407	86 (1.670)	6 (0.120)	6/252	NT	6.0%	coding (132/1065 nt)	PP_2207	membrane protein
	?	NC_002947	= 2513444	104 (2.080)					coding (169/1065 nt)	PP_2207	membrane protein
*	?	NC_002947	= 2521628	80 (1.550)	5 (0.100)	5/246	NT	6.2%	coding (2879/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2521668	76 (1.560)					coding (2919/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2530695	NA (NA)	6 (0.120)	3/244	NT	12.7%	intergenic (+114/‑67)	PP_2218/PP_2219	transposase/hypothetical protein
	?	NC_002947	4022279 =	44 (0.850)					coding (27/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase
*	?	NC_002947	2537768 =	48 (0.930)	6 (0.120)	5/242	NT	11.5%	coding (1271/2916 nt)	mrpAB	K(+)/H(+) antiporter subunit A/B
	?	NC_002947	2537815 =	48 (1.000)					coding (1224/2916 nt)	mrpAB	K(+)/H(+) antiporter subunit A/B
*	?	NC_002947	2542061 =	55 (1.060)	3 (0.060)	3/250	NT	5.4%	coding (595/993 nt)	PP_2234	AraC family transcriptional regulator
	?	NC_002947	2542124 =	52 (1.050)					coding (658/993 nt)	PP_2234	AraC family transcriptional regulator
*	?	NC_002947	= 2556868	37 (0.720)	5 (0.100)	4/248	NT	11.1%	coding (443/1200 nt)	PP_2241	MFS transporter
	?	NC_002947	= 2556900	45 (0.910)					coding (411/1200 nt)	PP_2241	MFS transporter
*	?	NC_002947	2590875 =	55 (1.060)	3 (0.060)	3/242	NT	5.7%	coding (219/426 nt)	PP_2268	endodeoxyribonuclease I
	?	NC_002947	2590910 =	48 (1.000)					coding (254/426 nt)	PP_2268	endodeoxyribonuclease I
*	?	NC_002947	2621926 =	37 (0.720)	3 (0.060)	3/246	NT	7.0%	intergenic (+300/‑41)	PP_2294/PP_5515	hypothetical protein/hypothetical protein
	?	NC_002947	2621965 =	45 (0.920)					intergenic (+339/‑2)	PP_2294/PP_5515	hypothetical protein/hypothetical protein
*	?	NC_002947	2626206 =	26 (0.500)	3 (0.060)	3/242	NT	11.5%	intergenic (+9/‑141)	PP_t40/PP_2298	tRNA‑His/hypothetical protein
	?	NC_002947	2626239 =	22 (0.460)					intergenic (+42/‑108)	PP_t40/PP_2298	tRNA‑His/hypothetical protein
*	?	NC_002947	2647348 =	57 (1.100)	3 (0.060)	3/246	NT	5.5%	coding (658/687 nt)	ybbA	ABC transporter ATP‑binding protein
	?	NC_002947	2647389 =	50 (1.020)					coding (617/687 nt)	ybbA	ABC transporter ATP‑binding protein
*	?	NC_002947	2653222 =	29 (0.560)	3 (0.060)	3/244	NT	9.3%	coding (609/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase
	?	NC_002947	2653271 =	31 (0.640)					coding (658/948 nt)	PP_2325	2‑dehydropantoate 2‑reductase
*	?	NC_002947	2669969 =	43 (0.830)	3 (0.060)	3/252	NT	7.1%	coding (2349/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2670006 =	37 (0.740)					coding (2312/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	= 2764604	39 (0.760)	3 (0.060)	3/248	NT	7.3%	coding (398/1095 nt)	PP_2418	cobalamin ABC transporter substrate‑binding protein
	?	NC_002947	= 2764631	39 (0.790)					coding (371/1095 nt)	PP_2418	cobalamin ABC transporter substrate‑binding protein
*	?	NC_002947	= 2936886	46 (0.890)	5 (0.100)	5/244	NT	9.6%	coding (920/1677 nt)	PP_2569	MHS family metabolite MFS transporter
	?	NC_002947	= 2936914	51 (1.050)					coding (948/1677 nt)	PP_2569	MHS family metabolite MFS transporter
*	?	NC_002947	2944810 =	60 (1.160)	4 (0.080)	3/244	NT	6.3%	coding (1239/1641 nt)	PP_2577	paraquat‑inducible protein B
	?	NC_002947	2944851 =	63 (1.300)					coding (1280/1641 nt)	PP_2577	paraquat‑inducible protein B
*	?	NC_002947	= 2954846	58 (1.120)	4 (0.080)	4/240	NT	7.4%	coding (69/843 nt)	PP_2587	LuxR family transcriptional regulator
	?	NC_002947	= 2954887	46 (0.970)					coding (110/843 nt)	PP_2587	LuxR family transcriptional regulator
*	?	NC_002947	= 2987610	NA (NA)	4 (0.080)	4/246	NT	NA	coding (789/2991 nt)	PP_2612	membrane protein
	?	NC_002947	= 2987639	NA (NA)					coding (760/2991 nt)	PP_2612	membrane protein
*	?	NC_002947	= 2988913	36 (0.700)	3 (0.060)	3/250	NT	8.4%	coding (429/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	= 2988969	31 (0.620)					coding (373/951 nt)	PP_2613	hypothetical protein
*	?	NC_002947	= 3027469	44 (0.850)	4 (0.080)	4/244	NT	8.9%	coding (834/1491 nt)	PP_2642	GntR family transcriptional regulator
	?	NC_002947	= 3027531	41 (0.850)					coding (896/1491 nt)	PP_2642	GntR family transcriptional regulator
*	?	NC_002947	= 3059142	35 (0.680)	4 (0.080)	4/244	NT	11.0%	coding (421/1275 nt)	PP_2671	sensor histidine kinase
	?	NC_002947	= 3059164	32 (0.660)					coding (443/1275 nt)	PP_2671	sensor histidine kinase
*	?	NC_002947	= 3092890	39 (0.760)	5 (0.100)	5/256	NT	11.7%	coding (851/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	= 3092929	37 (0.730)					coding (890/939 nt)	PP_2701	LysR family transcriptional regulator
*	?	NC_002947	= 3190948	49 (0.950)	4 (0.080)	4/246	NT	7.7%	coding (1051/1254 nt)	PP_2800	diaminobutyrate‑2‑oxoglutarate transaminase
	?	NC_002947	= 3190996	50 (1.020)					coding (1003/1254 nt)	PP_2800	diaminobutyrate‑2‑oxoglutarate transaminase
*	?	NC_002947	= 3242037	36 (0.700)	4 (0.080)	4/250	NT	10.2%	coding (114/2289 nt)	PP_2839	hypothetical protein
	?	NC_002947	= 3242069	36 (0.730)					coding (146/2289 nt)	PP_2839	hypothetical protein
*	?	NC_002947	= 3254349	40 (0.770)	3 (0.060)	3/248	NT	7.1%	coding (1389/2202 nt)	PP_2852	sulfatase domain‑containing protein
	?	NC_002947	= 3254378	40 (0.810)					coding (1360/2202 nt)	PP_2852	sulfatase domain‑containing protein
*	?	NC_002947	3266247 =	41 (0.790)	3 (0.060)	3/246	NT	6.8%	coding (267/372 nt)	PP_2864	hypothetical protein
	?	NC_002947	3266291 =	43 (0.880)					coding (223/372 nt)	PP_2864	hypothetical protein
*	?	NC_002947	3314412 =	35 (0.680)	3 (0.060)	3/246	NT	8.9%	coding (459/1503 nt)	proP	osmosensory proline/betaine/H+ permease
	?	NC_002947	3314453 =	28 (0.570)					coding (500/1503 nt)	proP	osmosensory proline/betaine/H+ permease
*	?	NC_002947	= 3315571	49 (0.950)	4 (0.080)	4/248	NT	7.8%	coding (588/702 nt)	PP_2915	membrane protein
	?	NC_002947	= 3315596	48 (0.970)					coding (563/702 nt)	PP_2915	membrane protein
*	?	NC_002947	= 3332679	55 (1.060)	4 (0.080)	4/238	NT	7.7%	coding (426/918 nt)	PP_2930	L‑serine dehydratase
	?	NC_002947	= 3332719	45 (0.950)					coding (386/918 nt)	PP_2930	L‑serine dehydratase
*	?	NC_002947	3337342 =	33 (0.640)	3 (0.060)	3/236	NT	9.8%	coding (546/1047 nt)	PP_2934	hypothetical protein
	?	NC_002947	3337387 =	25 (0.530)					coding (591/1047 nt)	PP_2934	hypothetical protein
*	?	NC_002947	= 3357887	49 (0.950)	3 (0.060)	3/248	NT	5.6%	coding (935/1008 nt)	PP_2953	alcohol dehydrogenase
	?	NC_002947	= 3357931	54 (1.100)					coding (979/1008 nt)	PP_2953	alcohol dehydrogenase
*	?	NC_002947	3381881 =	38 (0.740)	3 (0.060)	3/248	NT	8.5%	coding (527/657 nt)	PP_2983	hypothetical protein
	?	NC_002947	3381900 =	28 (0.570)					coding (546/657 nt)	PP_2983	hypothetical protein
*	?	NC_002947	3393834 =	37 (0.720)	3 (0.060)	3/252	NT	7.9%	coding (573/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393867 =	34 (0.680)					coding (540/900 nt)	PP_2997	protein CnmA
*	?	NC_002947	3433578 =	42 (0.810)	4 (0.080)	4/248	NT	8.4%	coding (257/531 nt)	PP_3050	hypothetical protein
	?	NC_002947	3433622 =	47 (0.950)					coding (301/531 nt)	PP_3050	hypothetical protein
*	?	NC_002947	= 3457526	27 (0.520)	3 (0.060)	3/248	NT	8.1%	coding (1165/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
	?	NC_002947	= 3457565	42 (0.850)					coding (1126/1392 nt)	bhbP	D‑beta‑hydroxybutyrate permease
*	?	NC_002947	3471591 =	53 (1.030)	5 (0.100)	4/248	NT	9.9%	coding (941/2460 nt)	PP_3084	ferric siderophore receptor
	?	NC_002947	3471661 =	40 (0.810)					coding (871/2460 nt)	PP_3084	ferric siderophore receptor
*	?	NC_002947	= 3513489	32 (0.620)	3 (0.060)	3/250	NT	8.5%	coding (2157/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3513524	34 (0.680)					coding (2192/4158 nt)	PP_3108	rhs family protein
*	?	NC_002947	= 3588095	34 (0.660)	3 (0.060)	3/250	NT	9.7%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588165	23 (0.460)					coding (12/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	3588097 =	34 (0.660)	3 (0.070)	3/220	NT	10.6%	intergenic (+18/‑57)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	3588165 =	22 (0.500)					coding (12/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	3597423 =	44 (0.850)	4 (0.080)	4/252	NT	8.4%	coding (689/1011 nt)	PP_3174	oxidoreductase
	?	NC_002947	3597463 =	45 (0.900)					coding (649/1011 nt)	PP_3174	oxidoreductase
*	?	NC_002947	3677188 =	48 (0.930)	3 (0.060)	3/246	NT	5.9%	coding (191/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	3677237 =	50 (1.020)					coding (240/1569 nt)	PP_3242	GGDEF domain‑containing protein
*	?	NC_002947	3790971 =	33 (0.640)	3 (0.060)	3/248	NT	7.8%	coding (415/1026 nt)	PP_3353	sulfatase‑modifying protein
	?	NC_002947	3791040 =	39 (0.790)					coding (484/1026 nt)	PP_3353	sulfatase‑modifying protein
*	?	NC_002947	3792154 =	43 (0.830)	3 (0.060)	3/246	NT	7.4%	coding (1164/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	3792203 =	34 (0.700)					coding (1115/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
*	?	NC_002947	= 3881632	61 (1.180)	4 (0.080)	4/248	NT	6.2%	coding (291/1416 nt)	oprN	multidrug RND transporter outer membrane protein OprN
	?	NC_002947	= 3881701	63 (1.280)					coding (360/1416 nt)	oprN	multidrug RND transporter outer membrane protein OprN
*	?	NC_002947	3912312 =	48 (0.930)	5 (0.100)	5/252	NT	9.3%	coding (658/1092 nt)	PP_3452	GGDEF domain‑containing protein
	?	NC_002947	3912352 =	51 (1.020)					coding (698/1092 nt)	PP_3452	GGDEF domain‑containing protein
*	?	NC_002947	= 3934402	59 (1.140)	4 (0.080)	3/248	NT	6.3%	coding (1011/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3934434	63 (1.280)					coding (979/1911 nt)	PP_3467	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	= 3992148	48 (0.930)	3 (0.060)	3/246	NT	5.8%	coding (921/1446 nt)	PP_3518	hypothetical protein
	?	NC_002947	= 3992171	52 (1.060)					coding (898/1446 nt)	PP_3518	hypothetical protein
*	?	NC_002947	= 4012716	33 (0.640)	4 (0.080)	4/246	NT	9.9%	coding (552/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
	?	NC_002947	= 4012757	42 (0.860)					coding (593/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
*	?	NC_002947	4013887 =	37 (0.720)	7 (0.150)	7/242	NT	15.7%	coding (229/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	4013931 =	41 (0.850)					coding (185/519 nt)	PP_3541	MgtC family transporter
*	?	NC_002947	= 4013895	36 (0.700)	5 (0.100)	5/242	NT	11.8%	coding (221/519 nt)	PP_3541	MgtC family transporter
	?	NC_002947	= 4013921	41 (0.850)					coding (195/519 nt)	PP_3541	MgtC family transporter
*	?	NC_002947	= 4065096	36 (0.700)	3 (0.060)	3/248	NT	7.4%	coding (864/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	= 4065143	41 (0.830)					coding (817/1491 nt)	PP_3582	RND transporter outer membrane protein
*	?	NC_002947	= 4088741	25 (0.480)	4 (0.080)	4/250	NT	14.0%	intergenic (+155/‑193)	PP_3598/kdgD	peptidase C26/5‑dehydro‑4‑deoxyglucarate dehydratase
	?	NC_002947	= 4088761	25 (0.500)					intergenic (+175/‑173)	PP_3598/kdgD	peptidase C26/5‑dehydro‑4‑deoxyglucarate dehydratase
*	?	NC_002947	4095586 =	40 (0.770)	4 (0.080)	3/246	NT	9.4%	intergenic (‑103/‑83)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein
	?	NC_002947	4095617 =	39 (0.800)					intergenic (‑134/‑52)	PP_3603/PP_5607	GntR family transcriptional regulator/membrane protein
*	?	NC_002947	4096282 =	50 (0.970)	5 (0.100)	5/250	NT	10.6%	coding (614/651 nt)	PP_5607	membrane protein
	?	NC_002947	4096343 =	36 (0.730)					intergenic (+24/‑51)	PP_5607/PP_5608	membrane protein/hypothetical protein
*	?	NC_002947	4099369 =	44 (0.850)	3 (0.060)	3/248	NT	6.5%	coding (649/1215 nt)	PP_3607	membrane protein
	?	NC_002947	4099406 =	44 (0.890)					coding (612/1215 nt)	PP_3607	membrane protein
*	?	NC_002947	= 4136428	46 (0.890)	4 (0.080)	4/252	NT	8.5%	coding (637/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	= 4136464	42 (0.840)					coding (673/921 nt)	PP_3640	AraC family transcriptional regulator
*	?	NC_002947	= 4150041	20 (0.390)	4 (0.090)	4/224	NT	19.0%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4150072	17 (0.380)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
*	?	NC_002947	4170895 =	36 (0.700)	3 (0.060)	3/244	NT	9.0%	coding (617/906 nt)	PP_3669	LysR family transcriptional regulator
	?	NC_002947	4170939 =	27 (0.560)					coding (661/906 nt)	PP_3669	LysR family transcriptional regulator
*	?	NC_002947	= 4247728	43 (0.830)	3 (0.060)	3/244	NT	6.8%	coding (189/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
	?	NC_002947	= 4247766	42 (0.870)					coding (151/1608 nt)	aruI	2‑ketoarginine decarboxylase AruI
*	?	NC_002947	4259919 =	46 (0.890)	4 (0.080)	4/252	NT	7.4%	coding (394/1059 nt)	PP_3733	hydrolase
	?	NC_002947	4260007 =	55 (1.100)					coding (306/1059 nt)	PP_3733	hydrolase
*	?	NC_002947	= 4261053	47 (0.910)	4 (0.080)	4/242	NT	8.6%	coding (1709/2460 nt)	PP_3734	ABC transporter permease
	?	NC_002947	= 4261087	41 (0.850)					coding (1675/2460 nt)	PP_3734	ABC transporter permease
*	?	NC_002947	4281263 =	49 (0.950)	4 (0.080)	4/246	NT	7.6%	coding (161/1197 nt)	PP_3751	cyanate transporter
	?	NC_002947	4281337 =	51 (1.040)					coding (87/1197 nt)	PP_3751	cyanate transporter
*	?	NC_002947	= 4421594	44 (0.850)	4 (0.080)	4/244	NT	8.5%	coding (1344/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
	?	NC_002947	= 4421633	45 (0.930)					coding (1383/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
*	?	NC_002947	4425420 =	51 (0.990)	3 (0.060)	3/250	NT	6.3%	intergenic (‑478/‑322)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
	?	NC_002947	4425465 =	40 (0.810)					intergenic (‑523/‑277)	PP_5647/PP_3917	hypothetical protein/hypothetical protein
*	?	NC_002947	4427633 =	48 (0.930)	3 (0.060)	3/246	NT	6.8%	intergenic (‑42/+113)	PP_t61/sohB	tRNA‑Cys/peptidase
	?	NC_002947	4427669 =	37 (0.760)					intergenic (‑78/+77)	PP_t61/sohB	tRNA‑Cys/peptidase
*	?	NC_002947	4429562 =	46 (0.890)	3 (0.060)	3/244	NT	6.3%	coding (600/711 nt)	PP_3923	phosphoglycerate mutase
	?	NC_002947	4429602 =	46 (0.950)					coding (640/711 nt)	PP_3923	phosphoglycerate mutase
*	?	NC_002947	= 4438181	30 (0.580)	4 (0.080)	4/242	NT	10.8%	coding (1341/1425 nt)	PP_3932	diguanylate cyclase
	?	NC_002947	= 4438272	38 (0.790)					coding (757/762 nt)	PP_3933	membrane protein
*	?	NC_002947	4474244 =	41 (0.790)	4 (0.080)	4/248	NT	9.5%	coding (1292/1536 nt)	PP_3964	transposase
	?	NC_002947	4474296 =	37 (0.750)					coding (1240/1536 nt)	PP_3964	transposase
*	?	NC_002947	4475792 =	54 (1.050)	5 (0.100)	4/242	NT	9.9%	coding (143/336 nt)	PP_3965	transposase
	?	NC_002947	4475866 =	41 (0.850)					coding (69/336 nt)	PP_3965	transposase
*	?	NC_002947	4502497 =	53 (1.030)	3 (0.060)	3/250	NT	5.9%	coding (126/1380 nt)	xanP	xanthine permease
	?	NC_002947	4502554 =	45 (0.910)					coding (183/1380 nt)	xanP	xanthine permease
*	?	NC_002947	4586034 =	23 (0.450)	6 (0.140)	6/216	NT	27.9%	intergenic (+117/+98)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586105 =	12 (0.280)					intergenic (+188/+27)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	4626524 =	NA (NA)	11 (0.210)	5/260	NT	NA	coding (980/1533 nt)	PP_4091	transposase
	?	NC_002947	4626581 =	NA (NA)					coding (923/1533 nt)	PP_4091	transposase
*	?	NC_002947	= 4699089	61 (1.180)	4 (0.080)	4/246	NT	6.4%	coding (1599/2655 nt)	kdpD	sensor protein
	?	NC_002947	= 4699105	59 (1.210)					coding (1583/2655 nt)	kdpD	sensor protein
*	?	NC_002947	4712124 =	51 (0.990)	4 (0.080)	4/248	NT	8.1%	coding (356/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	4712160 =	42 (0.850)					coding (392/2115 nt)	PP_4171	hypothetical protein
*	?	NC_002947	= 4731657	51 (0.990)	3 (0.060)	3/244	NT	6.0%	coding (1104/1224 nt)	sucB	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
	?	NC_002947	= 4731698	47 (0.970)					coding (1063/1224 nt)	sucB	2‑oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase subunit
*	?	NC_002947	4759856 =	60 (1.160)	4 (0.080)	4/238	NT	7.4%	intergenic (‑73/‑83)	pvdP/pvdM	pyoverdine biosynthesis‑like protein/dipeptidase
	?	NC_002947	4759907 =	45 (0.950)					intergenic (‑124/‑32)	pvdP/pvdM	pyoverdine biosynthesis‑like protein/dipeptidase
*	?	NC_002947	= 4765593	52 (1.010)	3 (0.060)	3/248	NT	5.9%	coding (246/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	= 4765635	46 (0.930)					coding (288/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4808174 =	0 (0.000)	17 (0.450)	15/190	NT	54.8%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	28 (0.740)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4810232 =	56 (1.080)	3 (0.060)	3/250	NT	5.4%	coding (72/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
	?	NC_002947	4810270 =	52 (1.050)					coding (110/837 nt)	PP_4236	thiol:disulfide interchange protein DsbE
*	?	NC_002947	= 4828483	42 (0.810)	3 (0.060)	3/246	NT	6.2%	coding (2707/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4828510	51 (1.040)					coding (2680/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4852078	42 (0.810)	4 (0.080)	4/250	NT	8.8%	coding (252/603 nt)	recR	recombination protein RecR
	?	NC_002947	= 4852106	43 (0.870)					coding (224/603 nt)	recR	recombination protein RecR
*	?	NC_002947	4876426 =	52 (1.010)	3 (0.060)	3/242	NT	5.9%	intergenic (+264/+173)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
	?	NC_002947	4876502 =	47 (0.980)					intergenic (+340/+97)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
*	?	NC_002947	= 4889595	20 (0.390)	4 (0.100)	3/206	NT	17.9%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889632	21 (0.510)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4912499 =	55 (1.060)	4 (0.080)	4/252	NT	6.3%	coding (215/537 nt)	ccmG	holocytochrome c synthetase subunit
	?	NC_002947	4912570 =	65 (1.300)					coding (144/537 nt)	ccmG	holocytochrome c synthetase subunit
*	?	NC_002947	= 4927257	47 (0.910)	4 (0.080)	3/248	NT	7.8%	coding (625/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4927286	50 (1.020)					coding (596/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
*	?	NC_002947	5045329 =	61 (1.180)	4 (0.080)	4/240	NT	7.9%	intergenic (‑131/+50)	PP_5681/PP_4449	hypothetical protein/hypothetical protein
	?	NC_002947	5045395 =	37 (0.780)					coding (239/255 nt)	PP_4449	hypothetical protein
*	?	NC_002947	5052526 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	intergenic (‑13/+92)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein
	?	NC_002947	5052573 =	36 (0.740)					intergenic (‑60/+45)	PP_4452/gsiA	NAD/NADP octopine/nopaline dehydrogenase family protein/glutathione ABC transporter ATP‑binding protein
*	?	NC_002947	= 5109707	51 (0.990)	4 (0.080)	4/250	NT	6.8%	coding (999/1419 nt)	aroP‑II	aromatic amino acid transport protein
	?	NC_002947	= 5109733	60 (1.210)					coding (973/1419 nt)	aroP‑II	aromatic amino acid transport protein
*	?	NC_002947	5207123 =	45 (0.870)	4 (0.080)	4/250	NT	9.3%	coding (55/594 nt)	PP_4588	nitroreductase family oxidoreductase
	?	NC_002947	5207163 =	35 (0.710)					coding (95/594 nt)	PP_4588	nitroreductase family oxidoreductase
*	?	NC_002947	5226225 =	59 (1.140)	5 (0.100)	4/250	NT	8.5%	coding (463/876 nt)	PP_4605	AraC family transcriptional regulator
	?	NC_002947	5226276 =	51 (1.030)					coding (514/876 nt)	PP_4605	AraC family transcriptional regulator
*	?	NC_002947	= 5258442	58 (1.120)	4 (0.080)	4/244	NT	7.2%	coding (715/1212 nt)	PP_4635	trans‑2‑enoyl‑CoA reductase
	?	NC_002947	= 5258487	49 (1.010)					coding (670/1212 nt)	PP_4635	trans‑2‑enoyl‑CoA reductase
*	?	NC_002947	= 5259968	47 (0.910)	3 (0.060)	3/246	NT	6.7%	coding (510/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
	?	NC_002947	= 5260028	39 (0.800)					coding (570/1179 nt)	yqeF	acetyl‑CoA acetyltransferase
*	?	NC_002947	5320576 =	42 (0.810)	4 (0.080)	3/248	NT	8.3%	coding (339/801 nt)	PP_4682	TPR repeat‑containing protein
	?	NC_002947	5320623 =	48 (0.970)					coding (292/801 nt)	PP_4682	TPR repeat‑containing protein
*	?	NC_002947	5383071 =	35 (0.680)	3 (0.060)	3/246	NT	8.0%	coding (210/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
	?	NC_002947	5383142 =	36 (0.740)					coding (139/768 nt)	pdhR	DNA‑binding transcriptional regulator LldR
*	?	NC_002947	5386665 =	47 (0.910)	3 (0.060)	3/248	NT	6.1%	coding (175/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5386728 =	47 (0.950)					coding (238/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	= 5486251	52 (1.010)	4 (0.080)	4/246	NT	7.3%	coding (1011/1296 nt)	purD	phosphoribosylamine‑‑glycine ligase
	?	NC_002947	= 5486301	52 (1.060)					coding (1061/1296 nt)	purD	phosphoribosylamine‑‑glycine ligase
*	?	NC_002947	= 5487779	50 (0.970)	3 (0.060)	3/246	NT	5.5%	coding (1108/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 5487836	55 (1.130)					coding (1165/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	5490301 =	46 (0.890)	4 (0.080)	4/238	NT	9.4%	coding (482/657 nt)	PP_5714	hypothetical protein
	?	NC_002947	5490342 =	35 (0.740)					coding (441/657 nt)	PP_5714	hypothetical protein
*	?	NC_002947	5493394 =	52 (1.010)	4 (0.080)	4/248	NT	8.0%	coding (622/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
	?	NC_002947	5493483 =	43 (0.870)					coding (533/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
*	?	NC_002947	= 5499268	49 (0.950)	5 (0.100)	4/242	NT	11.2%	coding (46/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	= 5499329	34 (0.710)					coding (107/720 nt)	cobK	precorrin‑6x reductase
*	?	NC_002947	5552330 =	57 (1.100)	5 (0.100)	5/246	NT	9.3%	coding (1559/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	5552377 =	44 (0.900)					intergenic (+40/+621)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	5559119 =	41 (0.790)	3 (0.060)	3/242	NT	8.3%	coding (134/1293 nt)	purA	adenylosuccinate synthetase
	?	NC_002947	5559153 =	28 (0.580)					coding (100/1293 nt)	purA	adenylosuccinate synthetase
*	?	NC_002947	= 5565307	48 (0.930)	3 (0.060)	3/250	NT	5.8%	coding (279/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
	?	NC_002947	= 5565341	51 (1.030)					coding (245/972 nt)	miaA	tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA
*	?	NC_002947	= 5594119	26 (0.500)	3 (0.070)	3/204	NT	12.2%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594156	23 (0.570)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	5611374 =	45 (0.870)	4 (0.080)	4/250	NT	8.1%	coding (368/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	5611414 =	48 (0.970)					coding (408/1176 nt)	PP_4931	hypothetical protein
*	?	NC_002947	= 5612120	44 (0.850)	6 (0.120)	5/246	NT	12.2%	coding (1114/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	= 5612156	45 (0.920)					coding (1150/1176 nt)	PP_4931	hypothetical protein
*	?	NC_002947	5627319 =	48 (0.930)	3 (0.060)	3/252	NT	5.3%	coding (183/1758 nt)	PP_4944	carbamoyltransferase
	?	NC_002947	5627357 =	60 (1.200)					coding (145/1758 nt)	PP_4944	carbamoyltransferase
*	?	NC_002947	= 5637262	50 (0.970)	4 (0.080)	4/252	NT	8.4%	coding (1630/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5637286	39 (0.780)					coding (1654/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
*	?	NC_002947	= 5669426	48 (0.930)	4 (0.090)	4/232	NT	7.9%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669447	51 (1.110)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	5698727 =	24 (0.460)	3 (0.070)	3/226	NT	11.6%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	25 (0.560)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5759140 =	65 (1.260)	3 (0.060)	3/244	NT	5.2%	coding (223/474 nt)	trmL	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL
	?	NC_002947	5759250 =	49 (1.010)					coding (333/474 nt)	trmL	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL
*	?	NC_002947	= 5764064	56 (1.080)	4 (0.080)	4/252	NT	6.4%	coding (45/1317 nt)	ctpA	carboxy‑terminal‑processing protease
	?	NC_002947	= 5764144	63 (1.260)					coding (125/1317 nt)	ctpA	carboxy‑terminal‑processing protease
*	?	NC_002947	= 5770663	37 (0.720)	4 (0.080)	4/244	NT	9.3%	coding (209/4716 nt)	PP_5060	hypothetical protein
	?	NC_002947	= 5770682	43 (0.890)					coding (190/4716 nt)	PP_5060	hypothetical protein
*	?	NC_002947	= 5802409	51 (0.990)	4 (0.080)	4/252	NT	7.5%	coding (425/1239 nt)	pilQ	type IV pili biogenesis protein
	?	NC_002947	= 5802485	49 (0.980)					coding (349/1239 nt)	pilQ	type IV pili biogenesis protein
*	?	NC_002947	5818359 =	57 (1.100)	3 (0.060)	3/242	NT	5.5%	coding (353/687 nt)	PP_5094	PLP binding domain‑containing protein
	?	NC_002947	5818398 =	50 (1.040)					coding (392/687 nt)	PP_5094	PLP binding domain‑containing protein
*	?	NC_002947	5865008 =	42 (0.810)	3 (0.060)	3/246	NT	6.5%	coding (1143/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5865052 =	47 (0.960)					coding (1099/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
*	?	NC_002947	= 5874406	60 (1.160)	4 (0.080)	4/246	NT	6.3%	coding (103/426 nt)	PP_5148	membrane protein
	?	NC_002947	= 5874439	62 (1.270)					coding (70/426 nt)	PP_5148	membrane protein
*	?	NC_002947	= 5883926	54 (1.050)	4 (0.080)	4/242	NT	8.1%	intergenic (+21/+99)	PP_5157/PP_5158	hypothetical protein/hypothetical protein
	?	NC_002947	= 5884016	41 (0.850)					intergenic (+111/+9)	PP_5157/PP_5158	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5923411	46 (0.890)	3 (0.060)	3/246	NT	6.3%	coding (1020/2874 nt)	gcvP‑II	glycine dehydrogenase
	?	NC_002947	= 5923437	45 (0.920)					coding (994/2874 nt)	gcvP‑II	glycine dehydrogenase
*	?	NC_002947	= 5925467	46 (0.890)	3 (0.060)	3/250	NT	5.8%	coding (678/1083 nt)	gcvT‑II	aminomethyltransferase
	?	NC_002947	= 5925506	54 (1.090)					coding (639/1083 nt)	gcvT‑II	aminomethyltransferase
*	?	NC_002947	5958930 =	55 (1.060)	5 (0.100)	5/242	NT	10.6%	coding (2334/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5958980 =	33 (0.690)					coding (2384/2856 nt)	cyaA	adenylate cyclase
*	?	NC_002947	5980745 =	48 (0.930)	3 (0.060)	3/248	NT	6.8%	coding (1390/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5980780 =	36 (0.730)					coding (1425/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
*	?	NC_002947	5987288 =	60 (1.160)	5 (0.100)	5/252	NT	8.7%	coding (370/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	5987333 =	47 (0.940)					coding (415/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	5990819 =	44 (0.850)	3 (0.060)	3/236	NT	7.1%	intergenic (‑153/‑76)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
	?	NC_002947	5990863 =	39 (0.830)					intergenic (‑197/‑32)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
*	?	NC_002947	5992446 =	53 (1.030)	3 (0.060)	3/246	NT	6.2%	coding (437/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	5992516 =	40 (0.820)					coding (507/1263 nt)	opdB	proline‑specific outer membrane porin D
*	?	NC_002947	= 6002866	49 (0.950)	4 (0.080)	4/240	NT	9.3%	coding (1071/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
	?	NC_002947	= 6002960	33 (0.690)					coding (977/1491 nt)	amaB	L‑piperidine‑6‑carboxylate dehydrogenase
*	?	NC_002947	= 6015200	44 (0.850)	5 (0.100)	5/244	NT	11.9%	coding (565/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
	?	NC_002947	= 6015290	33 (0.680)					coding (475/1860 nt)	PP_5266	acetyl‑CoA hydrolase family protein
*	?	NC_002947	6060431 =	64 (1.240)	6 (0.130)	4/232	NT	10.3%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060518 =	47 (1.020)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	6117172 =	47 (0.910)	4 (0.080)	4/242	NT	8.7%	coding (1381/1401 nt)	lpd	dihydrolipoyl dehydrogenase
	?	NC_002947	6117223 =	40 (0.830)					intergenic (+31/+81)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein