breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	14,234	A→G	7.5%	E302G (GAA→GGA)	gyrB →	DNA gyrase subunit B
RA	15,617	G→A	7.5%	R763H (CGT→CAT)	gyrB →	DNA gyrase subunit B
RA	26,245	A→T	8.0%	Q122L (CAG→CTG)	PP_0021 →	hypothetical protein
RA	36,169	G→T	7.1%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	6.8%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	7.8%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,683	C→T	6.8%	A324T (GCG→ACG)	PP_0033 ←	undecaprenyl‑glycosyl transferase
RA	58,747	T→A	10.6%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	10.6%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	68,591	T→C	6.0%	I228V (ATT→GTT)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,598	T→G	6.3%	P225P (CCA→CCC)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,603	C→A	6.6%	G224W (GGG→TGG)	PP_0058 ←	1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	71,791	A→T	6.7%	A38A (GCT→GCA)	glyS ←	glycine‑tRNA ligase subunit beta
RA	71,796	C→G	6.6%	A37P (GCT→CCT)	glyS ←	glycine‑tRNA ligase subunit beta
RA	71,801	A→T	6.6%	L35Q (CTG→CAG)	glyS ←	glycine‑tRNA ligase subunit beta
RA	85,038	T→C	7.7%	intergenic (+16/+114)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,040	G→A	8.0%	intergenic (+18/+112)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	101,284	A→G	6.3%	N35S (AAC→AGC)	prlC →	oligopeptidase A
RA	130,603	G→A	7.6%	intergenic (+47/+38)	PP_mr02 → / ← engB	Pseudomon‑1 ncRNA/GTP‑binding protein
RA	132,467	G→C	6.3%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,471	T→C	6.2%	intergenic (+45/‑107)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	138,950	T→G	8.7%	R518S (AGA→AGC) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,951	C→A	8.5%	R518I (AGA→ATA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	138,952	T→C	9.1%	R518G (AGA→GGA) ‡	kinB ←	alginate biosynthesis sensor protein KinB
RA	147,906	C→T	6.5%	A62T (GCC→ACC)	PP_0139 ←	lipoprotein
RA	150,817	A→T	5.5%	C45S (TGC→AGC)	PP_0142 ←	ABC transporter permease
RA	168,379	T→C	6.6%	intergenic (‑136/‑25)	gcdR ← / → gcdH	gcdH transcriptional regulator/glutaryl‑CoA dehydrogenase
RA	195,559	C→A	24.0%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	12.2%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	12.2%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	37.8%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	7.5%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	26.9%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	28.7%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	36.6%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	36.5%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	6.8%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	12.7%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	10.8%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	9.5%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	8.5%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	14.1%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	15.3%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	9.7%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	6.2%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	200,152	G→A	6.6%	P1886P (CCG→CCA)	PP_0168 →	putative surface adhesion protein
RA	217,045	T→A	6.5%	A7517A (GCT→GCA)	PP_0168 →	putative surface adhesion protein
RA	217,051	C→G	6.4%	V7519V (GTC→GTG)	PP_0168 →	putative surface adhesion protein
RA	220,618	C→G	6.6%	intergenic (+75/‑53)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,619	T→C	6.6%	intergenic (+76/‑52)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,622	G→A	6.4%	intergenic (+79/‑49)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	220,623	C→G	6.5%	intergenic (+80/‑48)	PP_0168 → / → PP_5431	putative surface adhesion protein/hypothetical protein
RA	253,348	T→C	17.2%	intergenic (‑133/+38)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,356	C→T	17.2%	intergenic (‑141/+30)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,358	A→T	17.3%	intergenic (‑143/+28)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,359	A→T	17.1%	intergenic (‑144/+27)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,361	A→G	17.2%	intergenic (‑146/+25)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	253,369	G→A	14.5%	intergenic (‑154/+17)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	255,251	C→T	8.5%	intergenic (‑135/+28)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,256	T→C	8.3%	intergenic (‑140/+23)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,257	C→T	8.3%	intergenic (‑141/+22)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,258	A→G	8.3%	intergenic (‑142/+21)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,259	G→A	8.3%	intergenic (‑143/+20)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	255,264	A→G	7.7%	intergenic (‑148/+15)	PP_0203 ← / ← PP_t74	dipeptidase/tRNA‑Arg
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	284,587	T→A	6.5%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	297,803	C→T	6.6%	E67E (GAG→GAA)	gshA ←	glutamate‑‑cysteine ligase
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	308,738	C→T	5.5%	intergenic (+1753/‑116)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	318,967	G→A	10.7%	R259C (CGC→TGC)	PP_0264 ←	sensor histidine kinase
RA	318,970	T→C	10.3%	T258A (ACC→GCC)	PP_0264 ←	sensor histidine kinase
RA	326,065	C→A	9.0%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	7.5%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	31.5%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	31.3%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	34.0%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	30.2%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	29.4%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	28.8%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	32.0%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	342,755	Δ1 bp	7.7%	coding (1272/1386 nt)	gabP‑I →	gamma‑aminobutyrate permease
RA	344,041	Δ1 bp	10.1%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	10.1%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	346,118	G→A	14.5%	N576N (AAC→AAT) ‡	PP_0287 ←	hypothetical protein
RA	346,119	T→A	15.4%	N576I (AAC→ATC) ‡	PP_0287 ←	hypothetical protein
RA	346,120	T→C	15.4%	N576D (AAC→GAC) ‡	PP_0287 ←	hypothetical protein
RA	346,804	G→A	6.6%	R348C (CGC→TGC)	PP_0287 ←	hypothetical protein
RA	352,580	C→G	9.6%	A106A (GCC→GCG)	hisF →	imidazole glycerol phosphate synthase subunit HisF
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	356,719	G→A	7.6%	G22S (GGC→AGC)	tdcG‑I →	L‑serine dehydratase
RA	358,085	A→G	11.2%	intergenic (+53/‑77)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,087	C→T	10.7%	intergenic (+55/‑75)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,090	T→C	13.0%	intergenic (+58/‑72)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,091	G→A	15.3%	intergenic (+59/‑71)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,094	A→G	12.2%	intergenic (+62/‑68)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	358,096	C→T	10.9%	intergenic (+64/‑66)	tdcG‑I → / → PP_5441	L‑serine dehydratase/hypothetical protein
RA	362,933	T→C	6.4%	K184E (AAG→GAG)	lcdH ←	L‑carnitine dehydrogenase
RA	381,856	T→A	10.7%	D230V (GAC→GTC)	PP_0317 ←	methyl‑accepting chemotaxis transducer
RA	399,528	A→G	7.1%	V19A (GTG→GCG) ‡	PP_0332 ←	acyltransferase
RA	399,529	C→T	7.1%	V19M (GTG→ATG) ‡	PP_0332 ←	acyltransferase
RA	403,271	G→C	9.1%	intergenic (‑74/+95)	msrA ← / ← PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
RA	432,993	A→T	11.5%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,994	A→T	11.5%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,995	A→T	11.5%	intergenic (+20/+27)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	450,918	T→C	5.5%	noncoding (115/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,919	T→G	5.5%	noncoding (116/127 nt)	PP_mr05 →	RsmY ncRNA
RA	450,920	C→A	5.5%	noncoding (117/127 nt)	PP_mr05 →	RsmY ncRNA
RA	451,268	T→C	8.4%	Q202R (CAG→CGG)	PP_0371 ←	LysR family transcriptional regulator
RA	451,270	A→T	8.5%	R201R (CGT→CGA) ‡	PP_0371 ←	LysR family transcriptional regulator
RA	451,272	G→A	8.6%	R201C (CGT→TGT) ‡	PP_0371 ←	LysR family transcriptional regulator
RA	461,311	A→T	6.9%	L385Q (CTG→CAG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	468,461	C→T	9.4%	A832A (GCG→GCA)	PP_0386 ←	sensory box protein
RA	468,464	A→G	9.6%	C831C (TGT→TGC)	PP_0386 ←	sensory box protein
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	507,557	G→A	7.0%	A485V (GCG→GTG)	estP ←	esterase EstP
RA	508,763	T→C	6.1%	D83G (GAC→GGC)	estP ←	esterase EstP
RA	508,771	Δ1 bp	7.7%	coding (240/1890 nt)	estP ←	esterase EstP
RA	508,775	A→T	7.5%	V79D (GTC→GAC)	estP ←	esterase EstP
RA	508,778:1	+G	7.7%	coding (233/1890 nt)	estP ←	esterase EstP
RA	513,453	T→G	11.5%	intergenic (‑100/‑91)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,459	A→T	10.6%	intergenic (‑106/‑85)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,460	C→T	11.2%	intergenic (‑107/‑84)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,461	T→A	11.3%	intergenic (‑108/‑83)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,462	A→G	11.3%	intergenic (‑109/‑82)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,463	A→T	12.8%	intergenic (‑110/‑81)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	513,469	C→A	13.8%	intergenic (‑116/‑75)	crp ← / → yhfA	DNA‑binding transcriptional dual regulator/hypothetical protein
RA	516,693	T→G	7.0%	E100A (GAA→GCA) ‡	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	516,694	C→A	7.0%	E100* (GAA→TAA) ‡	PP_0429 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	519,674	T→C	6.7%	intergenic (+28/‑72)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,676	G→A	6.8%	intergenic (+30/‑70)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	519,677	T→C	6.7%	intergenic (+31/‑69)	argC → / → erpA	N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA
RA	536,279	C→T	8.1%	noncoding (179/190 nt)	PP_mr06 ←	P27 ncRNA
RA	536,280	A→G	8.0%	noncoding (178/190 nt)	PP_mr06 ←	P27 ncRNA
RA	543,727	A→G	5.5%	N656S (AAC→AGC)	rpoC →	DNA‑directed RNA polymerase subunit beta'
RA	562,705	C→T	8.3%	A144V (GCA→GTA)	rpsD →	30S ribosomal protein S4
RA	571,617	G→A	11.6%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,618	T→C	11.6%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	583,846	C→T	6.2%	T571M (ACG→ATG)	selB →	selenocysteyl‑tRNA‑specific translation elongation factor
RA	603,658	T→A	10.5%	intergenic (+54/‑38)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,660	G→A	10.4%	intergenic (+56/‑36)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,661	T→C	10.4%	intergenic (+57/‑35)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	603,663	T→A	10.5%	intergenic (+59/‑33)	ribAB‑I → / → ribH	bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
RA	615,007	C→T	6.3%	L80L (CTG→CTA)	ispA ←	farnesyl diphosphate synthase
RA	616,401	G→A	6.0%	noncoding (121/142 nt)	PP_mr11 ←	FMN regulatory region
RA	632,035	C→G	9.3%	G469A (GGC→GCC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,038	A→C	9.3%	F468C (TTC→TGC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,040	C→T	9.2%	A467A (GCG→GCA)	aldB‑I ←	aldehyde dehydrogenase
RA	632,043	G→C	8.9%	A466A (GCC→GCG)	aldB‑I ←	aldehyde dehydrogenase
RA	632,046	A→G	8.9%	H465H (CAT→CAC) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,048	G→T	8.3%	H465N (CAT→AAT) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,051	C→G	10.6%	A464P (GCG→CCG)	aldB‑I ←	aldehyde dehydrogenase
RA	646,602	C→T	6.9%	A75A (GCC→GCT)	acoR →	acetoin catabolism regulatory protein
RA	646,603	A→G	6.9%	S76G (AGC→GGC)	acoR →	acetoin catabolism regulatory protein
RA	652,764	G→C	8.2%	intergenic (‑101/+17)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	652,767	G→C	9.0%	intergenic (‑104/+14)	dsbD‑I ← / ← ctpL	thiol/disulfide interchange protein 1/methyl‑accepting chemotaxis protein CtpL
RA	660,940	G→T	9.4%	intergenic (+72/‑95)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,941	A→T	9.6%	intergenic (+73/‑94)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	660,942	A→C	9.6%	intergenic (+74/‑93)	speA → / → PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
RA	679,996	Δ1 bp	8.5%	coding (883/1278 nt)	PP_0582 →	thiolase family protein
RA	685,580	Δ1 bp	8.0%	coding (667/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	689,978	A→G	7.0%	V220A (GTG→GCG)	PP_0591 ←	adenosine deaminase
RA	693,590	C→G	8.2%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	697,481	G→A	6.7%	intergenic (+408/‑343)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,485	C→G	6.4%	intergenic (+412/‑339)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,486	C→G	8.6%	intergenic (+413/‑338)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,490	T→C	6.5%	intergenic (+417/‑334)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	51.2%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	14.4%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	14.6%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	14.6%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	708,972	A→G	9.1%	V458V (GTA→GTG)	murJ →	lipid II flippase
RA	719,424	C→T	6.6%	A165T (GCA→ACA)	PP_0613 ←	amidase family protein
RA	733,244	A→T	7.5%	intergenic (+219/‑144)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,245	A→G	7.4%	intergenic (+220/‑143)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,248	C→T	7.0%	intergenic (+223/‑140)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	733,249	A→T	7.0%	intergenic (+224/‑139)	clpB → / → PP_t07	chaperone protein ClpB/tRNA‑Asn
RA	739,976	C→T	8.1%	G217G (GGG→GGA)	pilC ←	type IV fimbrial assembly protein PilC
RA	750,543	T→C	5.5%	R107R (AGA→AGG)	PP_0640 ←	hypothetical protein
RA	762,579	A→T	6.3%	E204V (GAA→GTA)	mdh →	malate dehydrogenase
RA	765,351	T→A	8.1%	intergenic (‑7/‑55)	PP_0657 ← / → PP_0658	amino acid ABC transporter substrate‑binding protein/homocysteine S‑methyltransferase family protein
RA	780,556	A→C	8.5%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,558	T→A	8.5%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,560	G→T	8.7%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	782,044	T→A	10.0%	intergenic (‑199/+51)	glyA‑II ← / ← PP_0672	serine hydroxymethyltransferase/sensory box protein
RA	782,045	T→A	10.0%	intergenic (‑200/+50)	glyA‑II ← / ← PP_0672	serine hydroxymethyltransferase/sensory box protein
RA	782,046	T→A	10.0%	intergenic (‑201/+49)	glyA‑II ← / ← PP_0672	serine hydroxymethyltransferase/sensory box protein
RA	783,239	T→C	5.8%	D896G (GAC→GGC)	PP_0672 ←	sensory box protein
RA	783,242	C→G	5.7%	G895A (GGC→GCC)	PP_0672 ←	sensory box protein
RA	787,188	C→G	6.2%	A102A (GCC→GCG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,189	C→G	6.2%	R103G (CGC→GGC)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	787,576	C→T	5.6%	L232L (CTG→TTG)	ettA →	ADP/ATP ratio sensor/translation inhibitor
RA	788,581	C→A	11.0%	intergenic (+31/‑182)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,583	A→T	10.6%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,584	A→T	10.6%	intergenic (+34/‑179)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	788,586	T→G	11.6%	intergenic (+36/‑177)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	798,663	C→G	7.3%	intergenic (+18/+9)	fklB‑I → / ← PP_0685	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	799,835	A→T	14.1%	L213Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	799,841	T→A	11.4%	D211V (GAC→GTC)	ispB ←	octaprenyl diphosphate synthase
RA	799,847	A→T	8.3%	L209Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	817,393	C→T	11.1%	E259K (GAA→AAA)	PP_0703 ←	transmembrane sensor
RA	817,396	T→C	11.4%	S258G (AGC→GGC)	PP_0703 ←	transmembrane sensor
RA	817,397	G→A	11.6%	A257A (GCC→GCT)	PP_0703 ←	transmembrane sensor
RA	817,400	A→G	11.6%	F256F (TTT→TTC)	PP_0703 ←	transmembrane sensor
RA	838,003	Δ1 bp	5.8%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,007:1	+C	5.8%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,071	A→G	6.9%	A209A (GCT→GCC)	rplY ←	50S ribosomal protein L25/general stress protein Ctc
RA	839,878	C→A	7.8%	R275L (CGT→CTT)	ispE ←	4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol kinase
RA	852,159	A→T	5.1%	Q313L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	852,164	G→C	5.1%	A315P (GCG→CCG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,165	C→G	5.1%	A315G (GCG→GGG) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,166	G→C	5.3%	A315A (GCG→GCC) ‡	hemA →	glutamyl‑tRNA reductase
RA	852,171	A→T	5.6%	Q317L (CAG→CTG)	hemA →	glutamyl‑tRNA reductase
RA	855,327	G→A	8.0%	A60T (GCC→ACC)	murI →	glutamate racemase
RA	889,441	A→C	10.4%	intergenic (+178/‑16)	PP_0769 → / → PP_0770	sensor histidine kinase/PemI‑like protein
RA	889,444	T→A	10.0%	intergenic (+181/‑13)	PP_0769 → / → PP_0770	sensor histidine kinase/PemI‑like protein
RA	889,445	T→A	10.0%	intergenic (+182/‑12)	PP_0769 → / → PP_0770	sensor histidine kinase/PemI‑like protein
RA	889,448	G→T	10.2%	intergenic (+185/‑9)	PP_0769 → / → PP_0770	sensor histidine kinase/PemI‑like protein
RA	892,889	C→T	6.9%	A276T (GCA→ACA)	pta ←	phosphate acetyltransferase
RA	892,893	G→C	6.7%	S274R (AGC→AGG)	pta ←	phosphate acetyltransferase
RA	892,897	A→G	6.7%	V273A (GTC→GCC)	pta ←	phosphate acetyltransferase
RA	895,198	G→C	13.1%	intergenic (+38/+26)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,201	T→C	11.9%	intergenic (+41/+23)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,207	G→C	13.7%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,210	G→C	12.1%	intergenic (+50/+14)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,216	G→A	12.5%	intergenic (+56/+8)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,219	G→C	12.5%	intergenic (+59/+5)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	897,394	G→A	6.9%	A276T (GCA→ACA)	PP_0779 →	methyl‑accepting chemotaxis transducer/sensory box protein
RA	897,397	G→T	6.9%	D277Y (GAT→TAT) ‡	PP_0779 →	methyl‑accepting chemotaxis transducer/sensory box protein
RA	897,398	A→C	6.8%	D277A (GAT→GCT) ‡	PP_0779 →	methyl‑accepting chemotaxis transducer/sensory box protein
RA	900,534	C→A	8.1%	intergenic (+26/+19)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,535	C→G	8.0%	intergenic (+27/+18)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	900,536	T→G	7.7%	intergenic (+28/+17)	PP_0784 → / ← cysZ	hypothetical protein/sulfate transport protein CysZ
RA	953,549	A→C	9.5%	I120L (ATC→CTC)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,552	T→A	9.7%	Y121N (TAT→AAT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,553	A→T	9.7%	Y121F (TAT→TTT) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,554	T→A	9.8%	Y121* (TAT→TAA) ‡	cyoC →	cytochrome bo terminal oxidase subunit III
RA	953,557	G→T	9.8%	E122D (GAG→GAT)	cyoC →	cytochrome bo terminal oxidase subunit III
RA	955,076	Δ1 bp	6.9%	intergenic (+30/‑283)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,080	T→A	7.4%	intergenic (+34/‑279)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,082:1	+G	7.4%	intergenic (+36/‑277)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,149	A→G	15.1%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	15.8%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	14.5%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	15.8%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	15.5%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	971,677	C→T	6.7%	intergenic (+32/‑32)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,678	A→T	6.3%	intergenic (+33/‑31)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,679	A→G	6.4%	intergenic (+34/‑30)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	973,283	C→T	5.5%	A525A (GCC→GCT)	secD →	protein translocase subunit SecD
RA	983,581	T→A	7.0%	intergenic (+39/‑50)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,584	A→T	7.0%	intergenic (+42/‑47)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,587	T→A	7.0%	intergenic (+45/‑44)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,925	G→A	10.2%	A99T (GCT→ACT)	ndk →	nucleoside diphosphate kinase
RA	999,625	C→G	7.0%	G165A (GGC→GCC)	PP_0861 ←	outer membrane ferric siderophore receptor
RA	1,013,234	C→A	9.5%	intergenic (+62/+69)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,235	A→T	8.9%	intergenic (+63/+68)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,241	G→C	12.3%	intergenic (+69/+62)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,242	G→C	12.3%	intergenic (+70/+61)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,248	A→T	10.5%	intergenic (+76/+55)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,013,249	T→G	9.2%	intergenic (+77/+54)	prfC → / ← potF‑I	peptide chain release factor 3/putrescine‑binding protein
RA	1,014,084	T→A	7.7%	H100L (CAC→CTC)	potF‑I ←	putrescine‑binding protein
RA	1,026,484	G→C	8.0%	L162V (CTG→GTG)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,026,485	G→C	9.1%	T161T (ACC→ACG)	dppA‑II ←	dipeptide ABC transporter substrate‑binding protein
RA	1,040,839	A→G	6.9%	L166L (TTG→CTG)	PP_0900 ←	PAP2 family protein
RA	1,045,611	T→C	5.8%	N923D (AAT→GAT)	PP_0906 ←	RND family multidrug transporter
RA	1,045,613	G→T	5.8%	A922D (GCC→GAC)	PP_0906 ←	RND family multidrug transporter
RA	1,045,617	A→G	6.4%	F921L (TTC→CTC)	PP_0906 ←	RND family multidrug transporter
RA	1,045,618	C→T	6.4%	E920E (GAG→GAA)	PP_0906 ←	RND family multidrug transporter
RA	1,045,622	A→C	6.6%	V919G (GTC→GGC)	PP_0906 ←	RND family multidrug transporter
RA	1,045,624	G→A	6.8%	I918I (ATC→ATT)	PP_0906 ←	RND family multidrug transporter
RA	1,050,716	T→C	6.8%	Y46C (TAT→TGT)	PP_0908 ←	hypothetical protein
RA	1,051,965	A→G	7.4%	L468L (TTG→CTG)	PP_0910 ←	hypothetical protein
RA	1,051,969	A→G	7.7%	A466A (GCT→GCC) ‡	PP_0910 ←	hypothetical protein
RA	1,051,970	G→C	8.3%	A466G (GCT→GGT) ‡	PP_0910 ←	hypothetical protein
RA	1,051,971	C→T	12.5%	A466T (GCT→ACT) ‡	PP_0910 ←	hypothetical protein
RA	1,051,975	C→T	8.5%	Q464Q (CAG→CAA)	PP_0910 ←	hypothetical protein
RA	1,070,246:1	+G	92.3%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,246:2	+A	92.3%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,286	A→C	6.9%	intergenic (+86/+56)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,074,380	A→G	7.3%	V159A (GTG→GCG)	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,074,382	G→T	7.4%	A158A (GCC→GCA)	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,074,385	A→C	7.4%	A157A (GCT→GCG) ‡	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,074,387	C→T	7.3%	A157T (GCT→ACT) ‡	gatA ←	glutamyl‑tRNA(Gln) amidotransferase subunit A
RA	1,086,210	A→G	6.8%	D394G (GAT→GGT)	tldD →	microcin B17 maturation protease
RA	1,101,798	G→T	7.4%	A127S (GCA→TCA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,799	C→G	7.3%	A127G (GCA→GGA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,800	A→C	7.3%	A127A (GCA→GCC) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,102,425	A→G	5.7%	K171E (AAG→GAG)	ttg2D →	toluene tolerance protein
RA	1,102,431	T→G	5.6%	F173V (TTC→GTC)	ttg2D →	toluene tolerance protein
RA	1,102,435	G→C	5.3%	R174P (CGT→CCT) ‡	ttg2D →	toluene tolerance protein
RA	1,102,436	T→G	5.4%	R174R (CGT→CGG) ‡	ttg2D →	toluene tolerance protein
RA	1,102,439	C→A	5.2%	D175E (GAC→GAA)	ttg2D →	toluene tolerance protein
RA	1,102,443	T→C	5.2%	F177L (TTC→CTC)	ttg2D →	toluene tolerance protein
RA	1,105,685	G→T	7.4%	V55V (GTG→GTT)	hisD →	histidinol dehydrogenase
RA	1,105,693	C→A	7.4%	T58N (ACC→AAC)	hisD →	histidinol dehydrogenase
RA	1,120,469	T→A	12.9%	intergenic (‑211/‑91)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,470	T→A	14.4%	intergenic (‑212/‑90)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,471	T→A	12.9%	intergenic (‑213/‑89)	pepA ← / → PP_0982	cytosol aminopeptidase/YjgP/YjgQ family permease
RA	1,120,932	G→A	6.8%	V125I (GTT→ATT) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,120,933	T→A	6.9%	V125D (GTT→GAT) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,120,934	T→C	6.9%	V125V (GTT→GTC) ‡	PP_0982 →	YjgP/YjgQ family permease
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,130,192	A→T	13.5%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,174,227	Δ1 bp	6.6%	coding (105/756 nt)	PP_1029 →	membrane protein
RA	1,184,149	T→A	7.0%	K79M (AAG→ATG)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,152	A→T	7.0%	V78E (GTA→GAA)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,158:1	+C	6.6%	coding (227/1458 nt)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,184,163	Δ1 bp	6.6%	coding (222/1458 nt)	mltF ←	membrane‑bound lytic murein transglycosylase F
RA	1,200,465	G→A	7.5%	V41M (GTG→ATG) ‡	gspG →	protein secretion protein
RA	1,200,466	T→C	7.4%	V41A (GTG→GCG) ‡	gspG →	protein secretion protein
RA	1,202,625	C→G	6.0%	R152G (CGC→GGC)	xcpY →	type II secretion pathway protein XcpY
RA	1,207,624	T→C	5.3%	A459A (GCA→GCG)	PP_1058 ←	hypothetical protein
RA	1,226,707	T→A	7.7%	intergenic (‑217/‑114)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,226,710	T→A	7.7%	intergenic (‑220/‑111)	gltI ← / → PP_1072	glutamate/aspartate ABC transporter substrate‑binding protein/leucine‑rich repeat‑containing protein
RA	1,243,738	T→A	13.4%	intergenic (+27/+72)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,739	T→C	13.3%	intergenic (+28/+71)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,740	C→G	13.3%	intergenic (+29/+70)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,741	G→A	12.9%	intergenic (+30/+69)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,243,742	T→A	12.9%	intergenic (+31/+68)	tsaA → / ← rnt	peroxiredoxin/ribonuclease T
RA	1,245,697	A→G	6.7%	S18G (AGC→GGC)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,701	T→G	6.9%	L19R (CTG→CGG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,704	C→A	7.2%	P20Q (CCG→CAG)	PP_1087 →	OmpA family outer membrane protein
RA	1,245,708	C→T	7.2%	A21A (GCC→GCT)	PP_1087 →	OmpA family outer membrane protein
RA	1,248,921	G→T	7.5%	intergenic (‑184/‑183)	PP_1089 ← / → bvgA	hypothetical protein/virulence factors transcription regulator BvgA
RA	1,251,589:1	+G	7.7%	coding (253/603 nt)	PP_1094 ←	electron transport complex protein
RA	1,254,439	C→A	6.4%	L354L (CTG→CTT)	metG ←	methionine‑‑tRNA ligase
RA	1,256,790	G→A	6.5%	intergenic (+37/+74)	mrp → / ← PP_mr14	ATP‑dependent Fe‑S cluster transferase/cspA regulatory region
RA	1,256,881	A→T	7.3%	noncoding (434/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,882	G→T	7.1%	noncoding (433/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,883	A→C	7.2%	noncoding (432/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,256,884	A→T	6.8%	noncoding (431/451 nt)	PP_mr14 ←	cspA regulatory region
RA	1,264,180	T→C	8.7%	Y76C (TAT→TGT)	PP_1105 ←	ATP‑dependent DNA ligase
RA	1,275,084	G→C	14.3%	intergenic (‑281/+31)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,281,191	A→T	13.4%	intergenic (+17/+26)	PP_5742 → / ← PP_1118	membrane protein/recombinase‑like protein
RA	1,281,194	A→T	13.5%	intergenic (+20/+23)	PP_5742 → / ← PP_1118	membrane protein/recombinase‑like protein
RA	1,294,114	C→T	10.2%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,115	A→T	9.8%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,116	A→G	9.8%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,299,470	C→A	5.8%	L236L (CTG→CTT)	PP_1134 ←	hypothetical protein
RA	1,305,054	C→T	9.7%	D115N (GAC→AAC)	livM ←	branched‑chain amino acid ABC transporter permease
RA	1,311,739	T→C	12.5%	intergenic (‑207/+71)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,311,742	G→A	8.3%	intergenic (‑210/+68)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,317,134	G→A	7.2%	L184L (CTG→CTA)	PP_1150 →	membrane protein
RA	1,319,011	T→G	8.5%	F79V (TTC→GTC) ‡	PP_1152 →	membrane fusion efflux protein
RA	1,319,012	T→G	8.5%	F79C (TTC→TGC) ‡	PP_1152 →	membrane fusion efflux protein
RA	1,319,015	A→T	8.3%	Q80L (CAG→CTG)	PP_1152 →	membrane fusion efflux protein
RA	1,319,018	C→A	8.5%	A81D (GCC→GAC) ‡	PP_1152 →	membrane fusion efflux protein
RA	1,319,019	C→A	10.0%	A81A (GCC→GCA) ‡	PP_1152 →	membrane fusion efflux protein
RA	1,327,121	C→T	48.4%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,352,304	G→A	6.4%	G18G (GGC→GGT)	PP_1178 ←	hypothetical protein
RA	1,383,254	A→T	10.6%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,392,236	G→T	8.1%	L51L (CTG→CTT)	PP_1214 →	transcriptional regulator
RA	1,392,241	T→A	6.5%	L53Q (CTG→CAG)	PP_1214 →	transcriptional regulator
RA	1,392,244	A→G	8.2%	D54G (GAC→GGC)	PP_1214 →	transcriptional regulator
RA	1,392,246	A→C	6.8%	K55Q (AAG→CAG)	PP_1214 →	transcriptional regulator
RA	1,403,590	G→A	8.6%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	8.6%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,405,614	A→T	9.1%	I23N (ATT→AAT)	PP_1228 ←	methyl‑accepting chemotaxis transducer
RA	1,413,433	T→A	5.7%	N155I (AAC→ATC)	PP_1235 ←	AhpC/TSA family protein
RA	1,416,934	A→C	8.3%	H61P (CAC→CCC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,936	G→A	6.9%	V62M (GTG→ATG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,941	T→C	7.0%	H63H (CAT→CAC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,943	G→T	7.5%	G64V (GGG→GTG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,951	T→A	7.4%	L67M (TTG→ATG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,419,548:1	+C	56.5%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,434,165	C→T	6.3%	L73L (CTG→CTA)	PP_1255 ←	cis‑4‑hydroxy‑D‑proline oxidase
RA	1,458,117	T→G	10.0%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,119	A→T	10.0%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,121	C→A	9.8%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,464,196	G→A	9.3%	T474T (ACC→ACT) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,198	T→A	8.9%	T474S (ACC→TCC) ‡	algX ←	alginate biosynthesis protein AlgX
RA	1,464,200	T→C	9.2%	Q473R (CAG→CGG)	algX ←	alginate biosynthesis protein AlgX
RA	1,483,878	C→G	11.5%	intergenic (+23/‑45)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,491,218	A→T	8.7%	E294V (GAA→GTA)	cysNC →	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase
RA	1,492,266	T→C	5.6%	intergenic (+27/+68)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,267	T→G	5.6%	intergenic (+28/+67)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,268	C→A	5.8%	intergenic (+29/+66)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,492,269	G→A	5.8%	intergenic (+30/+65)	cysNC → / ← imm	sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein
RA	1,493,639	A→G	6.5%	V411A (GTA→GCA)	PP_1306 ←	Pyocin S‑type killer domain‑containing protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,501,071	A→G	9.3%	F213S (TTC→TCC)	PP_1313 ←	AraC family transcriptional regulator
RA	1,504,067	T→A	7.8%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	7.8%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,506,923	A→G	10.0%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	10.1%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	10.5%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	10.5%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,517,281	C→A	10.9%	A157A (GCC→GCA)	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,517,282	G→C	11.1%	V158L (GTG→CTG) ‡	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,517,283	T→G	11.1%	V158G (GTG→GGG) ‡	murE →	UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase
RA	1,521,246	T→G	11.9%	F168C (TTC→TGC) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,247	C→G	11.9%	F168L (TTC→TTG) ‡	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,521,248	C→A	11.9%	Q169K (CAG→AAG)	murD →	UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
RA	1,528,705	T→C	8.4%	V349A (GTA→GCA)	ftsA →	cell division protein FtsA
RA	1,528,711	T→C	8.3%	L351P (CTG→CCG) ‡	ftsA →	cell division protein FtsA
RA	1,528,712	G→A	8.6%	L351L (CTG→CTA) ‡	ftsA →	cell division protein FtsA
RA	1,528,718	G→A	11.0%	V353V (GTG→GTA)	ftsA →	cell division protein FtsA
RA	1,531,231	T→C	7.6%	intergenic (+33/+15)	lpxC → / ← PP_1344	UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
RA	1,531,232	T→G	7.6%	intergenic (+34/+14)	lpxC → / ← PP_1344	UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
RA	1,531,233	C→A	7.7%	intergenic (+35/+13)	lpxC → / ← PP_1344	UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
RA	1,531,234	G→A	8.2%	intergenic (+36/+12)	lpxC → / ← PP_1344	UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
RA	1,533,852	C→T	6.4%	S621S (AGC→AGT)	secA →	protein translocase subunit SecA
RA	1,544,107	T→A	8.2%	L304Q (CTG→CAG)	mdfA →	multidrug MFS transporter
RA	1,544,109	T→A	8.2%	C305S (TGC→AGC)	mdfA →	multidrug MFS transporter
RA	1,544,489	C→A	23.8%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,492	G→C	16.7%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,494	C→G	17.1%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,499	C→G	17.4%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,501	G→C	17.4%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,504	T→G	15.4%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,549,895	A→T	10.9%	I99F (ATC→TTC)	groL →	chaperonin GroEL
RA	1,549,900	C→T	9.2%	V100V (GTC→GTT)	groL →	chaperonin GroEL
RA	1,549,901	A→G	9.4%	N101D (AAC→GAC)	groL →	chaperonin GroEL
RA	1,549,906	A→T	9.6%	E102D (GAA→GAT)	groL →	chaperonin GroEL
RA	1,551,282	G→T	8.8%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,285	A→C	8.7%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,555,388	A→C	14.6%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	14.5%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	14.6%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,576,756	G→C	9.3%	intergenic (‑276/+37)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,757	A→T	9.1%	intergenic (‑277/+36)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,760	A→T	8.9%	intergenic (‑280/+33)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,576,761	G→C	9.1%	intergenic (‑281/+32)	galP‑II ← / ← ttgC	porin‑like protein/efflux pump outer membrane protein TtgC
RA	1,583,344	G→A	6.6%	W178* (TGG→TAG)	ttgR →	HTH‑type transcriptional regulator TtgR
RA	1,584,716	G→C	13.6%	P100A (CCG→GCG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,721	T→G	11.0%	D98A (GAC→GCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,724	T→C	11.1%	Q97R (CAG→CGG) ‡	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,725	G→A	11.6%	Q97* (CAG→TAG) ‡	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,728	C→A	13.8%	A96S (GCC→TCC)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,585,171	G→A	7.3%	intergenic (‑158/‑218)	PP_1388 ← / → PP_1389	EmrB/QacA family drug resistance transporter/oxaloacetate decarboxylase
RA	1,589,873	G→A	8.0%	R221H (CGC→CAC)	PP_1394 →	acetolactate synthase large subunit
RA	1,591,965	G→C	11.8%	intergenic (‑72/‑131)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,982	C→A	20.3%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,591,987	T→G	21.9%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,004	G→C	8.5%	intergenic (‑111/‑92)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,596,373	A→T	6.1%	L213Q (CTG→CAG)	dctD‑III ←	C4‑dicarboxylate transport transcriptional regulator
RA	1,597,536	T→A	8.0%	Q409L (CAG→CTG)	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,601,266	G→T	14.3%	intergenic (‑83/‑104)	bglX ← / → PP_1404	beta‑D‑glucoside glucohydrolase/hypothetical protein
RA	1,601,331	C→T	12.9%	intergenic (‑148/‑39)	bglX ← / → PP_1404	beta‑D‑glucoside glucohydrolase/hypothetical protein
RA	1,622,188	G→A	9.2%	E368K (GAG→AAG)	PP_1421 →	sensor histidine kinase TctE
RA	1,622,907	C→G	7.2%	G150G (GGG→GGC)	PP_1422 ←	hypothetical protein
RA	1,622,913	C→T	7.2%	L148L (TTG→TTA) ‡	PP_1422 ←	hypothetical protein
RA	1,622,914	A→T	7.2%	L148* (TTG→TAG) ‡	PP_1422 ←	hypothetical protein
RA	1,622,915	A→G	6.9%	L148L (TTG→CTG) ‡	PP_1422 ←	hypothetical protein
RA	1,622,921	C→G	7.3%	A146P (GCC→CCC)	PP_1422 ←	hypothetical protein
RA	1,631,093	T→C	5.8%	intergenic (+27/‑154)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,094	T→G	5.7%	intergenic (+28/‑153)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,095	C→A	5.2%	intergenic (+29/‑152)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,631,096	G→A	5.6%	intergenic (+30/‑151)	PP_1430 → / → lepA	DegP‑like serine endoprotease/elongation factor 4
RA	1,632,093	C→T	7.4%	P283S (CCT→TCT) ‡	lepA →	elongation factor 4
RA	1,632,095	T→A	7.4%	P283P (CCT→CCA) ‡	lepA →	elongation factor 4
RA	1,632,097	A→G	7.3%	E284G (GAG→GGG)	lepA →	elongation factor 4
RA	1,639,575	C→T	7.5%	intergenic (‑165/‑146)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,581	T→C	7.0%	intergenic (‑171/‑140)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,585	A→C	7.2%	intergenic (‑175/‑136)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,639,586	A→G	7.3%	intergenic (‑176/‑135)	czcR‑III ← / → PP_1439	response regulator/hypothetical protein
RA	1,642,255	T→C	8.3%	intergenic (‑83/+69)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,264	G→A	14.0%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,271	G→C	13.0%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,277	G→C	12.2%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,278	C→G	12.5%	intergenic (‑106/+46)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,279	G→C	12.7%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,285	G→C	12.7%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,292	T→C	7.7%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,457	C→T	8.1%	R422H (CGC→CAC)	oprB‑II ←	carbohydrate‑selective porin
RA	1,647,927	G→A	100%	Y265Y (TAC→TAT)	oprB‑II ←	carbohydrate‑selective porin
RA	1,661,477	C→A	10.0%	A50D (GCC→GAC)	PP_1456 →	membrane protein
RA	1,661,480	T→A	11.5%	L51Q (CTG→CAG)	PP_1456 →	membrane protein
RA	1,661,483	T→G	9.1%	V52G (GTC→GGC)	PP_1456 →	membrane protein
RA	1,663,076	A→T	8.3%	intergenic (+22/+16)	purT → / ← yhjE	phosphoribosylglycinamide formyltransferase/metabolite transport protein YhjE
RA	1,663,077	A→T	8.3%	intergenic (+23/+15)	purT → / ← yhjE	phosphoribosylglycinamide formyltransferase/metabolite transport protein YhjE
RA	1,667,060	A→G	7.3%	K21R (AAG→AGG)	ffh →	signal recognition particle GTPase subunit
RA	1,670,626	T→C	10.4%	intergenic (+49/‑46)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,627	T→G	10.4%	intergenic (+50/‑45)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,628	C→A	10.6%	intergenic (+51/‑44)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,670,629	G→A	11.1%	intergenic (+52/‑43)	rplS → / → PP_1466	50S ribosomal protein L19/acyl‑CoA thioesterase
RA	1,683,248	C→G	7.7%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,724	C→A	6.3%	A101A (GCC→GCA)	PP_1478 →	xenobiotic reductase
RA	1,685,130	G→T	6.2%	intergenic (‑8/+224)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,685,132	A→T	6.2%	intergenic (‑10/+222)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,685,134	A→C	6.2%	intergenic (‑12/+220)	PP_1480 ← / ← patD	hypothetical protein/medium chain aldehyde dehydrogenase
RA	1,686,149	C→T	8.5%	P210P (CCG→CCA)	patD ←	medium chain aldehyde dehydrogenase
RA	1,691,772	T→C	9.8%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	10.2%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	16.0%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	15.5%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	12.8%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,797	G→A	12.7%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,685	C→G	7.8%	P52A (CCT→GCT) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,693,686	C→G	7.7%	P52R (CCT→CGT) ‡	PP_1489 →	CheW domain‑containing protein
RA	1,695,020	C→G	6.5%	A329G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,023	G→A	6.4%	R330Q (CGG→CAG)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,026	T→C	6.4%	L331P (CTG→CCG)	wspC →	biofilm formation methyltransferase WspC
RA	1,695,029	C→G	6.5%	A332G (GCC→GGC)	wspC →	biofilm formation methyltransferase WspC
RA	1,698,641	T→C	10.0%	V130A (GTC→GCC)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,703,214	A→G	12.2%	intergenic (+63/‑104)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,216	C→T	11.9%	intergenic (+65/‑102)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,221	T→C	16.2%	intergenic (+70/‑97)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,248	A→G	32.0%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	31.9%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	33.2%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,738,440	T→A	9.2%	V251V (GTA→GTT)	PP_1532 ←	putative Phage integrase
RA	1,738,930	A→T	5.1%	V88D (GTC→GAC)	PP_1532 ←	putative Phage integrase
RA	1,764,227	A→G	8.5%	E45E (GAA→GAG)	PP_1573 →	major tail protein
RA	1,765,243	T→G	6.6%	S136S (TCT→TCG)	PP_1574 →	hypothetical protein
RA	1,765,244	G→T	6.2%	G137C (GGC→TGC)	PP_1574 →	hypothetical protein
RA	1,765,247	A→C	6.2%	T138P (ACG→CCG) ‡	PP_1574 →	hypothetical protein
RA	1,765,248	C→A	6.1%	T138K (ACG→AAG) ‡	PP_1574 →	hypothetical protein
RA	1,774,419	C→A	6.7%	V534V (GTC→GTA)	PP_1581 →	BNR domain‑containing protein
RA	1,774,420	A→C	6.7%	S535R (AGT→CGT) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,421	G→T	6.7%	S535I (AGT→ATT) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,774,422	T→G	6.7%	S535R (AGT→AGG) ‡	PP_1581 →	BNR domain‑containing protein
RA	1,780,737	T→A	8.1%	I203F (ATC→TTC)	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,743	A→C	7.4%	F201V (TTC→GTC)	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,744	G→T	7.6%	D200E (GAC→GAA)	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,780,750	T→A	8.7%	E198D (GAA→GAT)	dapC ←	N‑succinyl‑L,L‑diaminopimelate aminotransferase
RA	1,786,910	Δ1 bp	5.6%	coding (741/864 nt)	tsf →	elongation factor Ts
RA	1,788,630	G→C	8.6%	V35L (GTG→CTG) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,631	T→A	8.1%	V35E (GTG→GAG) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,632	G→C	8.5%	V35V (GTG→GTC) ‡	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,641	C→G	10.1%	H38Q (CAC→CAG)	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,788,642	A→C	9.9%	K39Q (AAG→CAG)	uppS →	(2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
RA	1,794,436	G→C	8.3%	E552Q (GAG→CAG) ‡	bamA‑I →	outer membrane protein assembly factor
RA	1,794,437	A→T	8.3%	E552V (GAG→GTG) ‡	bamA‑I →	outer membrane protein assembly factor
RA	1,794,438	G→C	10.4%	E552D (GAG→GAC) ‡	bamA‑I →	outer membrane protein assembly factor
RA	1,797,971	C→G	7.5%	T224T (ACC→ACG)	lpxA →	acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase
RA	1,802,441	A→T	9.8%	M809L (ATG→TTG) ‡	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,443	G→C	9.0%	M809I (ATG→ATC) ‡	dnaEA →	DNA polymerase III subunit alpha
RA	1,802,445	A→T	9.3%	K810M (AAG→ATG)	dnaEA →	DNA polymerase III subunit alpha
RA	1,810,335	T→G	12.1%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,810,336	C→A	10.0%	intergenic (+97/‑72)	eno → / → ftsB	enolase/cell division protein
RA	1,833,424	G→A	10.2%	R201C (CGC→TGC)	PP_1637 ←	LysR family transcriptional regulator
RA	1,833,427	T→C	10.5%	T200A (ACG→GCG)	PP_1637 ←	LysR family transcriptional regulator
RA	1,864,750	T→C	8.1%	A28A (GCT→GCC)	hda →	DnaA regulatory inactivator Hda
RA	1,864,753	G→A	8.0%	A29A (GCG→GCA)	hda →	DnaA regulatory inactivator Hda
RA	1,877,897	A→G	14.2%	M7V (ATG→GTG)	PP_1684 →	transporter
RA	1,879,890	G→A	12.8%	intergenic (+74/+62)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,891	C→A	11.9%	intergenic (+75/+61)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,894	T→G	11.4%	intergenic (+78/+58)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,879,895	T→C	11.4%	intergenic (+79/+57)	PP_1686 → / ← PP_1687	glutathione peroxidase/hypothetical protein
RA	1,882,347	C→T	8.3%	A73T (GCT→ACT)	PP_1689 ←	long‑chain fatty acid transporter
RA	1,898,650	G→A	6.6%	intergenic (+56/‑115)	PP_t16 → / → PP_t17	tRNA‑Asp/tRNA‑Val
RA	1,898,660	T→C	6.7%	intergenic (+66/‑105)	PP_t16 → / → PP_t17	tRNA‑Asp/tRNA‑Val
RA	1,916,384	T→G	11.6%	intergenic (+86/‑29)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,916,385	G→C	12.5%	intergenic (+87/‑28)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,916,386	C→A	12.5%	intergenic (+88/‑27)	PP_1715 → / → PP_1716	hypothetical protein/Cro/CI family transcriptional regulator
RA	1,920,303	T→G	12.5%	I52L (ATC→CTC)	prc ←	tail‑specific protease Prc
RA	1,920,304	C→A	10.3%	E51D (GAG→GAT)	prc ←	tail‑specific protease Prc
RA	1,928,266	A→G	8.0%	F609S (TTC→TCC)	PP_1728 ←	membrane protein
RA	1,928,269	A→T	8.0%	I608N (ATC→AAC)	PP_1728 ←	membrane protein
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,933,881	C→T	9.2%	L270L (TTG→TTA) ‡	minC ←	septum site‑determining protein MinC
RA	1,933,882	A→G	9.3%	L270S (TTG→TCG) ‡	minC ←	septum site‑determining protein MinC
RA	2,014,115	A→C	9.6%	L458R (CTG→CGG)	PP_1794 ←	hypothetical protein
RA	2,016,200	T→A	11.3%	M65L (ATG→TTG)	PP_1795 ←	hypothetical protein
RA	2,016,202	T→A	11.3%	N64I (AAC→ATC) ‡	PP_1795 ←	hypothetical protein
RA	2,016,203	T→A	11.3%	N64Y (AAC→TAC) ‡	PP_1795 ←	hypothetical protein
RA	2,016,205	T→A	14.1%	K63M (AAG→ATG)	PP_1795 ←	hypothetical protein
RA	2,021,487	G→C	11.4%	intergenic (+24/‑415)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,488	G→C	11.4%	intergenic (+25/‑414)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,489	G→C	11.0%	intergenic (+26/‑413)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,052,784	G→T	8.8%	intergenic (+16/+34)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,052,785	A→T	8.0%	intergenic (+17/+33)	prmB → / ← PP_1828	N5‑glutamine S‑adenosyl‑L‑methionine‑dependent methyltransferase/hypothetical protein
RA	2,063,185	C→G	10.0%	intergenic (+42/‑165)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,192	C→A	11.7%	intergenic (+49/‑158)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,193	A→C	11.6%	intergenic (+50/‑157)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,194	T→C	10.8%	intergenic (+51/‑156)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,201	G→A	18.3%	intergenic (+58/‑149)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,205	T→C	13.2%	intergenic (+62/‑145)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,208	G→A	13.6%	intergenic (+65/‑142)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,212	T→C	15.4%	intergenic (+69/‑138)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,219	G→A	13.1%	intergenic (+76/‑131)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,220	G→T	13.2%	intergenic (+77/‑130)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,221	T→G	23.1%	intergenic (+78/‑129)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,063,228	C→G	15.0%	intergenic (+85/‑122)	PP_1838 → / → PP_1839	membrane protein/hypothetical protein
RA	2,077,982	G→A	7.7%	E236K (GAG→AAG)	PP_1853 →	LysR family transcriptional regulator
RA	2,087,220	T→C	7.7%	intergenic (+33/+885)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,222	G→A	7.7%	intergenic (+35/+883)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,223	T→C	7.9%	intergenic (+36/+882)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,225	G→A	7.9%	intergenic (+38/+880)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,335	Δ1 bp	6.6%	intergenic (+148/+770)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,087,343	Δ1 bp	6.1%	intergenic (+156/+762)	PP_1865 → / ← aroH	transposase/3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,089,215	T→C	8.3%	A79A (GCA→GCG)	aroH ←	3‑deoxy‑7‑phosphoheptulonate synthase
RA	2,092,426	T→A	10.6%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,427	T→A	10.3%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,104,697	A→G	7.4%	F63L (TTC→CTC)	PP_1879 ←	hypothetical protein
RA	2,104,698	C→T	7.2%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein
RA	2,104,902	G→C	15.5%	intergenic (‑19/+22)	PP_1879 ← / ← PP_1880	hypothetical protein/outer membrane autotransporter
RA	2,112,732	C→A	11.1%	P518P (CCG→CCT) ‡	PP_1882 ←	membrane protein
RA	2,112,733	G→C	11.1%	P518R (CCG→CGG) ‡	PP_1882 ←	membrane protein
RA	2,112,738	G→C	11.1%	H516Q (CAC→CAG) ‡	PP_1882 ←	membrane protein
RA	2,112,739	T→G	11.1%	H516P (CAC→CCC) ‡	PP_1882 ←	membrane protein
RA	2,127,349	T→A	9.3%	V907E (GTG→GAG)	PP_1887 →	hypothetical protein
RA	2,154,386	T→G	9.4%	Q129P (CAG→CCG)	PP_1909 ←	septum formation protein
RA	2,154,391	T→A	9.2%	Q127H (CAA→CAT)	PP_1909 ←	septum formation protein
RA	2,154,396	C→A	9.6%	G126W (GGG→TGG)	PP_1909 ←	septum formation protein
RA	2,166,644	T→A	6.8%	intergenic (‑488/‑293)	PP_5483 ← / → PP_1921	hypothetical protein/hypothetical protein
RA	2,171,792	T→A	8.0%	intergenic (+327/+76)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,171,796	A→G	9.2%	intergenic (+331/+72)	PP_5484 → / ← PP_1924	hypothetical protein/phosphinothricin N‑acetyltransferase
RA	2,224,391	A→C	8.9%	I52M (ATT→ATG)	PP_1962 ←	site‑specific recombinase
RA	2,224,396	T→A	9.3%	N51Y (AAC→TAC)	PP_1962 ←	site‑specific recombinase
RA	2,224,830	C→T	9.1%	E601E (GAG→GAA) ‡	PP_1963 ←	hypothetical protein
RA	2,224,832	C→G	9.1%	E601Q (GAG→CAG) ‡	PP_1963 ←	hypothetical protein
RA	2,224,834	A→G	9.4%	I600T (ATT→ACT)	PP_1963 ←	hypothetical protein
RA	2,225,015	T→C	7.9%	I540V (ATT→GTT)	PP_1963 ←	hypothetical protein
RA	2,230,996	A→T	8.0%	E71D (GAA→GAT)	PP_1969 →	molybdenum cofactor biosynthesis protein A
RA	2,231,001	C→G	7.8%	A73G (GCC→GGC)	PP_1969 →	molybdenum cofactor biosynthesis protein A
RA	2,231,006	A→T	7.5%	I75F (ATC→TTC)	PP_1969 →	molybdenum cofactor biosynthesis protein A
RA	2,234,931	C→T	5.2%	G14G (GGC→GGT)	uvrB →	uvrABC excinuclease protein B
RA	2,234,932	G→C	7.4%	D15H (GAC→CAC) ‡	uvrB →	uvrABC excinuclease protein B
RA	2,234,933	A→G	5.4%	D15G (GAC→GGC) ‡	uvrB →	uvrABC excinuclease protein B
RA	2,235,038	A→G	6.6%	N50S (AAC→AGC)	uvrB →	uvrABC excinuclease protein B
RA	2,252,813	T→A	8.3%	intergenic (+69/‑50)	leuD → / → PP_1987	3‑isopropylmalate dehydratase small subunit/UbiE/COQ5 family methlytransferase
RA	2,260,746	G→C	10.1%	G445A (GGC→GCC)	fimV →	motility protein FimV
RA	2,280,705	C→T	5.9%	V615V (GTC→GTT)	fadH →	2,4‑dienoyl‑CoA reductase
RA	2,280,709	T→C	5.7%	Y617H (TAT→CAT)	fadH →	2,4‑dienoyl‑CoA reductase
RA	2,282,730	T→C	15.4%	intergenic (‑122/+107)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,737	T→G	15.6%	intergenic (‑129/+100)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,770	T→G	29.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	21.0%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	21.0%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	20.3%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,812	C→A	8.3%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,819	G→A	8.1%	intergenic (‑211/+18)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,304,497	C→G	8.9%	L115L (CTG→CTC)	PP_2027 ←	hypothetical protein
RA	2,311,048	G→A	8.0%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein
RA	2,311,049	T→C	8.0%	V267A (GTA→GCA) ‡	PP_2033 →	hypothetical protein
RA	2,311,147	A→G	8.7%	T300A (ACC→GCC)	PP_2033 →	hypothetical protein
RA	2,316,769	C→T	6.3%	S191S (AGC→AGT)	PP_2038 →	long‑chain‑fatty‑acid‑‑CoA ligase
RA	2,324,924	G→A	6.6%	R95Q (CGA→CAA)	yidH →	inner membrane protein
RA	2,324,928	T→G	6.8%	R96R (CGT→CGG)	yidH →	inner membrane protein
RA	2,329,762	A→C	6.9%	I39L (ATC→CTC)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,329,767	T→C	7.3%	L40L (CTT→CTC)	PP_2048 →	acyl‑CoA dehydrogenase
RA	2,332,944	T→G	9.8%	C109G (TGT→GGT)	PP_2050 →	hypothetical protein
RA	2,332,948	C→G	9.3%	A110G (GCC→GGC)	PP_2050 →	hypothetical protein
RA	2,332,952	C→A	8.9%	T111T (ACC→ACA)	PP_2050 →	hypothetical protein
RA	2,354,540	A→T	6.5%	intergenic (‑9/+49)	PP_2068 ← / ← PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
RA	2,354,541	T→G	6.6%	intergenic (‑10/+48)	PP_2068 ← / ← PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
RA	2,354,542	T→G	6.5%	intergenic (‑11/+47)	PP_2068 ← / ← PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
RA	2,367,410	A→C	7.1%	Q76H (CAA→CAC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,367,411	G→T	6.8%	V77L (GTG→TTG)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,385,477	Δ1 bp	7.9%	coding (401/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,483:1	+A	8.1%	coding (395/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,387,191	C→G	12.1%	intergenic (‑88/‑50)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,387,193	C→G	12.9%	intergenic (‑90/‑48)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,387,195	C→G	12.9%	intergenic (‑92/‑46)	PP_2094 ← / → pyrD	nitrate‑binding protein NasS/dihydroorotate dehydrogenase
RA	2,402,301:1	+A	6.3%	coding (66/330 nt)	PP_2103 ←	hypothetical protein
RA	2,402,308	A→T	6.4%	L20Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,402,317	Δ1 bp	6.1%	coding (50/330 nt)	PP_2103 ←	hypothetical protein
RA	2,417,286	C→G	6.5%	H107Q (CAC→CAG)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,418,565	C→A	9.3%	R534S (CGT→AGT)	PP_2119 →	ABC transporter permease/ATP‑binding protein
RA	2,419,298	C→A	10.6%	A150E (GCG→GAG) ‡	ctpH →	methyl‑accepting chemotaxis protein CtpH
RA	2,419,299	G→A	10.8%	A150A (GCG→GCA) ‡	ctpH →	methyl‑accepting chemotaxis protein CtpH
RA	2,419,300	T→C	10.6%	F151L (TTC→CTC) ‡	ctpH →	methyl‑accepting chemotaxis protein CtpH
RA	2,419,301	T→G	10.6%	F151C (TTC→TGC) ‡	ctpH →	methyl‑accepting chemotaxis protein CtpH
RA	2,420,598	Δ1 bp	11.1%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	10.3%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,422,357	G→A	8.9%	L215L (CTG→CTA)	moeA →	molybdenum::molybdopterin ligase
RA	2,426,561	G→A	8.1%	H111H (CAC→CAT)	PP_2127 ←	sensor histidine kinase
RA	2,441,353	A→G	8.7%	D164G (GAC→GGC)	topA →	DNA topoisomerase I
RA	2,441,367	A→G	7.5%	N169D (AAT→GAT)	topA →	DNA topoisomerase I
RA	2,441,371	C→T	7.5%	A170V (GCC→GTC)	topA →	DNA topoisomerase I
RA	2,458,093	G→A	8.5%	intergenic (+165/‑40)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,097	G→C	8.5%	intergenic (+169/‑36)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,458,100	C→G	8.9%	intergenic (+172/‑33)	PP_2150 → / → sthA	thiamine biosynthesis lipoprotein/pyridine nucleotide transhydrogenase
RA	2,461,707	C→A	8.4%	P236T (CCG→ACG)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,461,714	T→G	7.4%	V238G (GTA→GGA) ‡	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,461,715	A→C	7.6%	V238V (GTA→GTC) ‡	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,480,116	G→C	6.8%	intergenic (‑55/+52)	PP_2173 ← / ← PP_2174	AraC family transcriptional regulator/hypothetical protein
RA	2,480,117	G→C	8.1%	intergenic (‑56/+51)	PP_2173 ← / ← PP_2174	AraC family transcriptional regulator/hypothetical protein
RA	2,485,379	G→C	5.8%	intergenic (+40/‑30)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,485,380	C→G	5.8%	intergenic (+41/‑29)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,485,381	G→C	5.9%	intergenic (+42/‑28)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,493,580	A→C	8.3%	M42L (ATG→CTG) ‡	PP_2186 →	formate dehydrogenase subunit delta
RA	2,493,582	G→T	8.5%	M42I (ATG→ATT) ‡	PP_2186 →	formate dehydrogenase subunit delta
RA	2,493,781	C→T	8.7%	R286H (CGC→CAC)	PP_2187 ←	universal stress protein family protein
RA	2,495,409	A→G	8.0%	*206W (TGA→TGG)	PP_2188 →	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE
RA	2,495,412	G→C	8.2%	intergenic (+3/+20)	PP_2188 → / ← PP_2189	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE/hypothetical protein
RA	2,495,413	G→C	8.2%	intergenic (+4/+19)	PP_2188 → / ← PP_2189	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE/hypothetical protein
RA	2,495,416	C→T	8.0%	intergenic (+7/+16)	PP_2188 → / ← PP_2189	tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE/hypothetical protein
RA	2,504,727	Δ1 bp	10.4%	coding (514/1146 nt)	yliI →	aldose sugar dehydrogenase
RA	2,504,734	T→A	10.4%	L174Q (CTG→CAG)	yliI →	aldose sugar dehydrogenase
RA	2,504,740:1	+T	10.9%	coding (527/1146 nt)	yliI →	aldose sugar dehydrogenase
RA	2,520,583	A→T	6.0%	K612* (AAG→TAG)	PP_2212 →	leucine‑rich repeat‑containing protein
RA	2,526,650	C→G	7.8%	G298G (GGC→GGG)	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,526,654	A→G	7.8%	I300V (ATC→GTC)	PP_2215 →	acetyl‑CoA acetyltransferase
RA	2,534,893	G→A	8.9%	A297V (GCA→GTA)	mrpD ←	K(+)/H(+) antiporter subunit D
RA	2,537,470:1	+A	9.1%	coding (1569/2916 nt)	mrpAB ←	K(+)/H(+) antiporter subunit A/B
RA	2,542,845	T→C	14.8%	L102P (CTG→CCG)	PP_2235 →	hypothetical protein
RA	2,542,851	G→C	14.8%	S104T (AGC→ACC)	PP_2235 →	hypothetical protein
RA	2,542,853	C→A	14.8%	L105M (CTG→ATG) ‡	PP_2235 →	hypothetical protein
RA	2,542,854	T→G	14.3%	L105R (CTG→CGG) ‡	PP_2235 →	hypothetical protein
RA	2,542,856	G→C	14.3%	V106L (GTG→CTG)	PP_2235 →	hypothetical protein
RA	2,568,693	T→A	12.2%	Q285H (CAA→CAT)	PP_2252 ←	hypothetical protein
RA	2,568,696	T→G	10.3%	E284D (GAA→GAC)	PP_2252 ←	hypothetical protein
RA	2,568,701	C→A	8.9%	V283F (GTC→TTC)	PP_2252 ←	hypothetical protein
RA	2,603,077	A→C	13.1%	K12Q (AAG→CAG) ‡	PP_5513 →	hypothetical protein
RA	2,603,079	G→C	13.1%	K12N (AAG→AAC) ‡	PP_5513 →	hypothetical protein
RA	2,603,081	G→T	12.8%	W13L (TGG→TTG)	PP_5513 →	hypothetical protein
RA	2,603,088	Δ1 bp	9.6%	coding (45/441 nt)	PP_5513 →	hypothetical protein
RA	2,629,073	G→T	7.1%	P10P (CCG→CCT)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,631,141	C→G	11.3%	L202L (CTC→CTG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,631,143	T→A	12.9%	L203Q (CTG→CAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,631,145	C→G	11.4%	Q204E (CAG→GAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,669,671	T→G	17.0%	intergenic (+38/+37)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,669,674	C→A	17.1%	intergenic (+41/+34)	prpD → / ← acnB	2‑methylcitrate dehydratase/aconitate hydratase B
RA	2,680,805	G→A	9.3%	Y150Y (TAC→TAT)	PP_2350 ←	LysR family transcriptional regulator
RA	2,683,827	A→G	7.2%	G246G (GGT→GGC)	PP_2352 ←	hypothetical protein
RA	2,692,749	G→A	11.1%	G125S (GGT→AGT)	PP_2360 →	type I pili subunit CsuA/B
RA	2,703,531	T→C	11.9%	L230L (TTG→CTG)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,729,033	T→A	8.6%	L254Q (CTG→CAG)	PP_2390 →	LysR family transcriptional regulator
RA	2,741,399	G→A	7.8%	V1260I (GTC→ATC)	PP_2395 →	leucine‑rich repeat‑containing protein
RA	2,753,883	A→C	12.7%	E70A (GAG→GCG)	czcA‑II →	cation efflux system protein
RA	2,753,885	A→G	14.8%	T71A (ACC→GCC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,886	C→T	10.7%	T71I (ACC→ATC) ‡	czcA‑II →	cation efflux system protein
RA	2,753,888	G→T	11.9%	A72S (GCG→TCG)	czcA‑II →	cation efflux system protein
RA	2,774,810	T→C	7.7%	P234P (CCA→CCG) ‡	PP_5521 ←	hypothetical protein
RA	2,774,811	G→C	7.7%	P234R (CCA→CGA) ‡	PP_5521 ←	hypothetical protein
RA	2,774,812	G→A	7.8%	P234S (CCA→TCA) ‡	PP_5521 ←	hypothetical protein
RA	2,774,870:1	+G	9.3%	coding (642/1353 nt)	PP_5521 ←	hypothetical protein
RA	2,774,877	Δ1 bp	9.1%	coding (635/1353 nt)	PP_5521 ←	hypothetical protein
RA	2,793,145	G→A	7.4%	V69V (GTG→GTA)	PP_2445 →	membrane protein
RA	2,799,171	A→G	16.2%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,812,775	C→T	13.9%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,778	C→G	12.5%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,822,895	G→C	9.3%	A156A (GCG→GCC)	curA →	NADPH‑dependent curcumin/dihydrocurcumin reductase
RA	2,822,898	G→C	9.3%	A157A (GCG→GCC)	curA →	NADPH‑dependent curcumin/dihydrocurcumin reductase
RA	2,868,876	G→C	8.2%	intergenic (+415/‑516)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,904,052	C→T	9.0%	W292* (TGG→TGA)	PP_2556 ←	chromate transporter
RA	2,914,108	C→T	6.8%	P1043L (CCC→CTC)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,937,767	G→T	32.4%	R430S (CGC→AGC)	PP_2570 ←	transposase
RA	2,937,768	A→T	22.3%	L429L (CTT→CTA) ‡	PP_2570 ←	transposase
RA	2,937,769	A→C	21.9%	L429R (CTT→CGT) ‡	PP_2570 ←	transposase
RA	2,948,090	C→T	17.3%	intergenic (+202/+28)	PP_2580 → / ← PP_2581	hypothetical protein/hypothetical protein
RA	2,951,341	A→C	11.0%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	10.6%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	13.5%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
JC	2,957,081	Δ84 bp	18.7%	intergenic (+36/‑77)	PP_2588 → / → PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
RA	2,963,420	G→A	7.7%	S171L (TCG→TTG)	PP_2593 ←	ferric siderophore ABC transporter permease
RA	2,965,289	C→T	8.0%	M446I (ATG→ATA)	PP_2595 ←	ABC transporter permease/ATP‑binding protein
RA	2,981,016	C→T	11.1%	G450D (GGC→GAC)	PP_2607 ←	hypothetical protein
RA	2,990,750:1	+A	11.4%	coding (730/2169 nt)	vgrG‑I ←	type VI secretion system protein
RA	2,990,761	Δ1 bp	10.3%	coding (719/2169 nt)	vgrG‑I ←	type VI secretion system protein
RA	3,006,468	T→G	15.0%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,473	G→T	14.8%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,474	A→C	15.0%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,479	C→A	14.8%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,048,529	A→T	11.2%	Q195L (CAG→CTG)	PP_2661 →	hypothetical protein
RA	3,054,778	T→A	14.6%	intergenic (‑253/+55)	PP_2666 ← / ← PP_2667	hypothetical protein/ABC transporter permease
RA	3,056,321	C→T	7.4%	G14D (GGC→GAC)	PP_2668 ←	ABC transporter ATP‑binding protein
RA	3,078,131	A→G	10.2%	S379P (TCG→CCG)	PP_2688 ←	hypothetical protein
RA	3,078,133	G→C	10.4%	A378G (GCC→GGC)	PP_2688 ←	hypothetical protein
RA	3,078,135	G→C	12.3%	P377P (CCC→CCG) ‡	PP_2688 ←	hypothetical protein
RA	3,078,137	G→C	10.3%	P377A (CCC→GCC) ‡	PP_2688 ←	hypothetical protein
RA	3,078,139	C→T	10.9%	G376E (GGG→GAG)	PP_2688 ←	hypothetical protein
RA	3,085,952	C→T	13.8%	G205D (GGC→GAC)	PP_2694 ←	aldehyde dehydrogenase family protein
RA	3,092,365	A→G	7.7%	E109G (GAA→GGA)	PP_2701 →	LysR family transcriptional regulator
RA	3,098,376	A→C	5.9%	K247T (AAG→ACG)	PP_2707 →	exodeoxyribonuclease III
RA	3,122,363	C→G	8.2%	G20A (GGC→GCC)	PP_2739 ←	sensory box protein
RA	3,128,949	C→G	8.0%	L66V (CTG→GTG)	dmoA‑I →	dimethyl‑sulfide monooxygenase
RA	3,130,371	G→A	8.0%	R63H (CGC→CAC)	PP_2747 →	hypothetical protein
RA	3,141,493	Δ1 bp	7.7%	coding (410/972 nt)	PP_2757 →	sugar‑binding protein
RA	3,141,507:1	+A	8.0%	coding (424/972 nt)	PP_2757 →	sugar‑binding protein
RA	3,153,732	G→C	7.0%	intergenic (+3/‑65)	PP_2769 → / → PP_2770	branched‑chain amino acid ABC transporter permease/hypothetical protein
RA	3,200,601	G→A	8.0%	P279P (CCG→CCA)	PP_2807 →	hypothetical protein
RA	3,212,988	T→A	9.8%	L19M (TTG→ATG)	mexC →	multidrug RND transporter membrane fusion protein MexC
RA	3,214,225	C→T	7.1%	A47V (GCC→GTC)	mexD →	multidrug RND transporter MexD
RA	3,214,295	C→T	6.5%	N70N (AAC→AAT)	mexD →	multidrug RND transporter MexD
RA	3,217,770	G→A	12.5%	R187H (CGC→CAC)	oprJ →	outer membrane protein OprJ
RA	3,229,093	C→T	8.5%	R184C (CGC→TGC)	PP_2829 →	GntR family transcriptional regulator
RA	3,238,145	T→G	10.0%	L195R (CTG→CGG)	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,238,147	T→A	13.0%	S196T (TCC→ACC) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,238,149	C→A	8.5%	S196S (TCC→TCA) ‡	PP_2836 →	2‑keto‑3‑deoxyxylonate dehydratase
RA	3,260,338	T→A	9.2%	Q161L (CAG→CTG)	PP_2857 ←	hypothetical protein
RA	3,263,408	A→T	7.5%	V380E (GTG→GAG)	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,264,007	A→G	12.3%	D180D (GAT→GAC) ‡	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,264,008	T→A	9.8%	D180V (GAT→GTT) ‡	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,264,009	C→T	9.9%	D180N (GAT→AAT) ‡	PP_2861 ←	methyl‑accepting chemotaxis transducer
RA	3,269,893	A→C	8.9%	I67S (ATC→AGC)	PP_2868 ←	Cro/CI family transcriptional regulator
RA	3,269,903	G→T	8.7%	L64M (CTG→ATG)	PP_2868 ←	Cro/CI family transcriptional regulator
RA	3,271,941	G→A	7.8%	D48D (GAC→GAT) ‡	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,271,942	T→C	7.5%	D48G (GAC→GGC) ‡	PP_2869 ←	FMN‑binding oxidoreductase
RA	3,287,276	T→C	25.0%	intergenic (+17/+24)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,287,277	G→A	24.9%	intergenic (+18/+23)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,330,904	T→G	8.6%	*366Y (TAA→TAC)	nspC ←	carboxynorspermidine/carboxyspermidine decarboxylase
RA	3,330,907	C→A	8.8%	S365S (TCG→TCT)	nspC ←	carboxynorspermidine/carboxyspermidine decarboxylase
RA	3,330,911	A→C	8.6%	L364R (CTG→CGG)	nspC ←	carboxynorspermidine/carboxyspermidine decarboxylase
RA	3,337,454	G→T	6.6%	G220W (GGG→TGG)	PP_2934 →	hypothetical protein
RA	3,343,795	T→C	7.6%	R66R (CGT→CGC)	PP_5541 →	hypothetical protein
RA	3,349,419	G→A	9.7%	G576D (GGT→GAT)	PP_2944 →	sensor histidine kinase
RA	3,350,937	T→C	7.0%	intergenic (+30/‑128)	PP_2945 → / → arfB	two‑component system sensor histidine kinase/response regulator/peptidyl‑tRNA hydrolase
RA	3,351,095	C→G	11.4%	P11A (CCA→GCA)	arfB →	peptidyl‑tRNA hydrolase
RA	3,380,536	A→G	8.3%	N70D (AAC→GAC)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,540	T→A	8.3%	L71Q (CTG→CAG)	tnpT‑I →	cointegrate resolution protein T
RA	3,380,544	C→T	8.5%	V72V (GTC→GTT)	tnpT‑I →	cointegrate resolution protein T
RA	3,398,903	C→G	7.8%	intergenic (+123/‑119)	aroQ‑III → / → PP_3004	type II 3‑dehydroquinate dehydratase/hypothetical protein
RA	3,420,750	G→A	8.5%	A51V (GCC→GTC)	PP_5554 ←	hypothetical protein
RA	3,442,394	G→A	9.7%	E385K (GAG→AAG)	PP_3062 →	tail length determination protein
RA	3,463,556	A→G	8.3%	W268R (TGG→CGG)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,477,547	G→A	6.4%	A140V (GCC→GTC)	PP_3088 ←	hypothetical protein
RA	3,477,550	A→T	6.2%	I139N (ATT→AAT)	PP_3088 ←	hypothetical protein
RA	3,484,520	C→T	8.7%	L468L (CTG→CTA)	PP_3091 ←	membrane protein
RA	3,526,480	A→G	8.9%	V106V (GTA→GTG)	PP_3117 →	DNA lesion error‑prone processing protein
RA	3,536,386	G→A	7.7%	L8L (CTG→CTA)	PP_3125 →	Cro/CI family transcriptional regulator
RA	3,542,318	A→G	6.8%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,321	C→T	6.8%	P134P (CCG→CCA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,553,793	C→T	6.4%	R154C (CGC→TGC)	PP_3138 →	VirK domain‑containing protein
RA	3,553,796	A→G	6.4%	S155G (AGC→GGC)	PP_3138 →	VirK domain‑containing protein
RA	3,553,797:1	+C	6.6%	coding (464/1002 nt)	PP_3138 →	VirK domain‑containing protein
RA	3,553,840	C→T	6.9%	I169I (ATC→ATT)	PP_3138 →	VirK domain‑containing protein
RA	3,558,479	C→T	8.0%	R260C (CGT→TGT)	PP_3142 →	sugar transferase
RA	3,580,628	A→G	8.0%	I255V (ATC→GTC) ‡	benR →	BenABC operon transcriptional activator
RA	3,580,630	C→G	7.7%	I255M (ATC→ATG) ‡	benR →	BenABC operon transcriptional activator
RA	3,580,632	C→T	7.9%	T256M (ACG→ATG)	benR →	BenABC operon transcriptional activator
RA	3,589,518	G→A	7.1%	L13L (CTG→CTA)	nicP‑I →	porin‑like protein
RA	3,605,915	C→A	5.5%	G283C (GGC→TGC)	PP_3181 ←	site‑specific recombinase
RA	3,606,861	G→A	8.7%	C752C (TGC→TGT)	PP_3182 ←	GGDEF domain‑containing protein
RA	3,614,088	T→C	7.6%	intergenic (+42/‑40)	PP_mr40 → / → pet	TPP regulatory region/protein Pet18
RA	3,628,082	C→G	8.5%	intergenic (+11/‑129)	PP_3198 → / → PP_3199	2Fe‑2S ferredoxin/monooxygenase
RA	3,640,335	C→T	6.9%	A122V (GCG→GTG)	PP_3207 →	cyclase
RA	3,649,826	G→T	10.3%	intergenic (+1303/+388)	PP_3214 → / ← PP_3216	hypothetical protein/cysteine dioxygenase
RA	3,683,003	A→G	10.0%	K72R (AAG→AGG)	PP_3249 →	putative oxidoreductase
RA	3,686,434	A→C	11.8%	D281A (GAC→GCC)	PP_3251 →	hypothetical protein
RA	3,686,436	C→T	12.5%	L282L (CTG→TTG)	PP_3251 →	hypothetical protein
RA	3,686,441	A→G	12.4%	Q283Q (CAA→CAG)	PP_3251 →	hypothetical protein
RA	3,686,443	G→T	12.8%	G284V (GGC→GTC)	PP_3251 →	hypothetical protein
RA	3,717,845	T→G	16.3%	N250H (AAC→CAC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,717,846	C→A	16.4%	V249V (GTG→GTT)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,735,139	Δ1 bp	8.9%	coding (36/3093 nt)	PP_3302 →	RND family transporter
RA	3,735,143:1	+T	9.6%	coding (40/3093 nt)	PP_3302 →	RND family transporter
RA	3,760,424	T→C	6.4%	intergenic (+82/‑229)	folEB → / → PP_3325	GTP cyclohydrolase I/ferric siderophore receptor
RA	3,762,942	A→T	7.4%	N62I (AAC→ATC)	PP_3326 →	hypothetical protein
RA	3,762,947	A→T	7.3%	I64F (ATC→TTC)	PP_3326 →	hypothetical protein
RA	3,763,083	C→T	13.7%	T109I (ACC→ATC)	PP_3326 →	hypothetical protein
RA	3,763,086	A→T	13.7%	H110L (CAT→CTT)	PP_3326 →	hypothetical protein
RA	3,763,089	T→A	13.4%	V111D (GTC→GAC)	PP_3326 →	hypothetical protein
RA	3,763,092	A→T	14.0%	K112M (AAG→ATG)	PP_3326 →	hypothetical protein
RA	3,763,095	A→G	14.6%	D113G (GAT→GGT)	PP_3326 →	hypothetical protein
RA	3,772,148	A→G	5.0%	intergenic (+67/‑240)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,772,151	G→C	5.0%	intergenic (+70/‑237)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,772,154	A→T	5.7%	intergenic (+73/‑234)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,772,155	T→A	5.1%	intergenic (+74/‑233)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,772,156	G→C	5.0%	intergenic (+75/‑232)	PP_3331 → / → PP_3332	membrane protein/cytochrome c‑type protein
RA	3,786,058	Δ1 bp	6.7%	coding (1151/1242 nt)	mhpT ←	3‑(3‑hydroxy‑phenyl)propionate transporter MhpT
RA	3,786,061	A→T	6.8%	V383E (GTG→GAG)	mhpT ←	3‑(3‑hydroxy‑phenyl)propionate transporter MhpT
RA	3,797,855	C→G	11.1%	V47L (GTG→CTG)	vdh ←	vanillin dehydrogenase
RA	3,798,255	C→T	6.6%	V215V (GTG→GTA)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,848,334	C→G	7.5%	A33A (GCC→GCG)	PP_3397 →	hypothetical protein
RA	3,848,338	T→A	7.3%	F35I (TTC→ATC) ‡	PP_3397 →	hypothetical protein
RA	3,848,339	T→A	8.3%	F35Y (TTC→TAC) ‡	PP_3397 →	hypothetical protein
RA	3,848,343	C→G	7.6%	A36A (GCC→GCG)	PP_3397 →	hypothetical protein
RA	3,853,118	T→A	20.9%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,863,777	G→C	10.3%	P900P (CCG→CCC)	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,863,781	A→C	10.8%	M902L (ATG→CTG) ‡	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,863,782	T→A	11.1%	M902K (ATG→AAG) ‡	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,863,783	G→T	10.8%	M902I (ATG→ATT) ‡	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,863,787	G→C	11.2%	G904R (GGG→CGG)	PP_3413 →	two‑component system sensor histidine kinase/response regulator
RA	3,865,771	G→A	8.0%	intergenic (‑127/+87)	PP_3414 ← / ← PP_3415	methyl‑accepting chemotaxis transducer/sensory box protein/LacI family transcriptional regulator
RA	3,866,354	C→G	10.0%	R175P (CGT→CCT)	PP_3415 ←	LacI family transcriptional regulator
RA	3,866,358	C→G	9.1%	G174R (GGG→CGG)	PP_3415 ←	LacI family transcriptional regulator
RA	3,866,362	C→G	9.5%	Q172H (CAG→CAC)	PP_3415 ←	LacI family transcriptional regulator
RA	3,866,365	A→C	9.5%	H171Q (CAT→CAG)	PP_3415 ←	LacI family transcriptional regulator
RA	3,882,813	A→G	6.5%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,882,824	C→T	7.1%	intergenic (+67/‑158)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,893,843	A→G	9.6%	F406L (TTC→CTC)	yegH ←	putative transporter
RA	3,895,005	G→A	8.7%	V18V (GTC→GTT)	yegH ←	putative transporter
RA	3,932,047	T→G	9.1%	E477A (GAG→GCG)	PP_3466 ←	ABC transporter permease/ATP‑binding protein
RA	3,941,173	A→G	8.0%	G9G (GGT→GGC)  *129Q (TAA→CAA)	PP_3475 ← PP_3476 ←	type II secretion system pseudopilin PulG‑like signal peptide protein type II secretion system protein G
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,965,442	T→C	7.3%	Y83H (TAC→CAC)	PP_3496 →	endoribonuclease L‑PSP
RA	3,977,351	G→C	8.3%	L1094V (CTG→GTG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,977,353	T→A	9.3%	D1093V (GAC→GTC)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,977,355	G→C	8.4%	H1092Q (CAC→CAG)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,991,236	G→A	8.1%	R131C (CGT→TGT)	PP_3517 ←	hypothetical protein
RA	3,997,686	C→A	9.5%	H124Q (CAC→CAA)	PP_3526 →	AraC family transcriptional regulator
RA	4,006,295	G→A	7.1%	A527A (GCC→GCT)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,010,957	T→C	16.0%	Y55Y (TAT→TAC)	pobR →	transcriptional regulator
RA	4,010,958	G→A	16.0%	V56I (GTA→ATA)	pobR →	transcriptional regulator
RA	4,022,287	G→A	8.5%	R7C (CGC→TGC)	PP_3547 ←	NAD(P)‑binding oxidoreductase
RA	4,039,566	T→C	6.1%	D141D (GAT→GAC)	PP_3560 →	LysR family transcriptional regulator
RA	4,039,657	C→T	7.7%	P172S (CCT→TCT) ‡	PP_3560 →	LysR family transcriptional regulator
RA	4,039,659	T→A	8.4%	P172P (CCT→CCA) ‡	PP_3560 →	LysR family transcriptional regulator
RA	4,039,661	A→G	7.1%	E173G (GAG→GGG)	PP_3560 →	LysR family transcriptional regulator
RA	4,043,323	C→T	8.0%	E141K (GAG→AAG)	PP_3564 ←	AraC family transcriptional regulator
RA	4,043,345	C→A	8.3%	V133V (GTG→GTT)	PP_3564 ←	AraC family transcriptional regulator
RA	4,067,147	G→T	6.8%	P639P (CCC→CCA)	mdtC ←	multidrug transporter membrane protein
RA	4,104,627	T→C	8.7%	L389P (CTG→CCG)	PP_3612 →	TonB‑dependent receptor
RA	4,115,977	G→A	6.6%	N203N (AAC→AAT)	ycaO ←	ribosomal protein S12 methylthiotransferase accessory factor
RA	4,129,557	C→T	7.5%	C58C (TGC→TGT)	PP_3633 →	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase
RA	4,141,770	A→C	8.9%	M245L (ATG→CTG) ‡	PP_3645 →	L‑proline amide hydrolase
RA	4,141,771	T→A	8.9%	M245K (ATG→AAG) ‡	PP_3645 →	L‑proline amide hydrolase
RA	4,141,772	G→T	8.9%	M245I (ATG→ATT) ‡	PP_3645 →	L‑proline amide hydrolase
RA	4,141,779	G→T	8.7%	V248L (GTG→TTG)	PP_3645 →	L‑proline amide hydrolase
RA	4,143,883	T→A	8.3%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,151,933:1	+C	8.9%	intergenic (+123/+28)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,151,938	A→T	8.9%	intergenic (+128/+23)	PP_3655 → / ← PP_3656	cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin
RA	4,156,687	T→A	9.1%	H35L (CAC→CTC)	PP_3659 ←	transcriptional regulator, AraC family
RA	4,165,152	A→G	6.5%	F317S (TTT→TCT) ‡	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,165,153	A→T	7.6%	F317I (TTT→ATT) ‡	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,165,154	C→T	6.0%	Q316Q (CAG→CAA)	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,188,260	G→T	8.2%	A52A (GCG→GCT)	PP_3684 →	hypothetical protein
RA	4,188,263	G→T	7.5%	V53V (GTG→GTT)	PP_3684 →	hypothetical protein
RA	4,200,212	T→A	8.9%	R276* (AGA→TGA)	PP_3690 ←	hypothetical protein
RA	4,200,215	T→A	9.1%	N275Y (AAT→TAT)	PP_3690 ←	hypothetical protein
RA	4,200,645	G→A	6.1%	G131G (GGC→GGT)	PP_3690 ←	hypothetical protein
RA	4,213,352	A→C	9.5%	L125V (TTG→GTG)	PP_3695 ←	hypothetical protein
RA	4,229,010	C→A	9.3%	G400C (GGC→TGC)	PP_3707 ←	hypothetical protein
RA	4,237,547	Δ1 bp	9.8%	coding (703/1122 nt)	catB ←	muconate cycloisomerase 1
RA	4,240,102	A→C	6.4%	I63S (ATC→AGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,240,105	G→C	6.9%	A62G (GCC→GGC)	PP_3717 ←	LuxR family transcriptional regulator
RA	4,243,152	C→T	8.3%	A196T (GCT→ACT)	PP_3720 ←	NAD(P)H quinone oxidoreductase
RA	4,243,153	A→G	8.1%	S195S (AGT→AGC)	PP_3720 ←	NAD(P)H quinone oxidoreductase
RA	4,243,160	T→C	7.9%	Y193C (TAC→TGC) ‡	PP_3720 ←	NAD(P)H quinone oxidoreductase
RA	4,243,161	A→G	7.7%	Y193H (TAC→CAC) ‡	PP_3720 ←	NAD(P)H quinone oxidoreductase
RA	4,261,967	C→G	12.7%	E265D (GAG→GAC) ‡	PP_3734 ←	ABC transporter permease
RA	4,261,968	T→A	12.3%	E265V (GAG→GTG) ‡	PP_3734 ←	ABC transporter permease
RA	4,261,969	C→G	12.9%	E265Q (GAG→CAG) ‡	PP_3734 ←	ABC transporter permease
RA	4,270,955	C→T	6.5%	Y365Y (TAC→TAT)	mrdA‑I →	transpeptidase
RA	4,314,731	Δ1 bp	7.4%	coding (933/1209 nt)	aspC →	aminotransferase
RA	4,314,735:1	+T	7.3%	coding (937/1209 nt)	aspC →	aminotransferase
RA	4,316,022	A→C	10.3%	A35A (GCA→GCC)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,316,025	G→T	9.3%	A36A (GCG→GCT)	PP_3788 →	non‑ribosomal peptide synthetase
RA	4,327,252	A→T	17.5%	N74Y (AAC→TAC) ‡	PP_3797 →	membrane protein
RA	4,327,253	A→T	17.5%	N74I (AAC→ATC) ‡	PP_3797 →	membrane protein
RA	4,340,075	A→T	20.4%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,076	G→C	21.2%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,081	A→G	33.0%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,082	C→T	25.0%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,083	A→G	27.5%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,084	C→T	25.0%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,089	G→C	29.5%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,090	A→T	28.1%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,348,705	A→G	57.5%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,351,931	T→G	7.5%	K92Q (AAG→CAG)	PP_3824 ←	hypothetical protein
RA	4,351,934	C→G	7.7%	D91H (GAC→CAC)	PP_3824 ←	hypothetical protein
RA	4,351,941	C→G	7.7%	V88V (GTG→GTC)	PP_3824 ←	hypothetical protein
RA	4,351,944	C→A	10.5%	L87L (CTG→CTT)	PP_3824 ←	hypothetical protein
RA	4,353,888	C→T	7.7%	H338H (CAC→CAT)	yrpB →	2‑nitropropane dioxygenase
RA	4,353,889	A→G	7.7%	M339V (ATG→GTG)	yrpB →	2‑nitropropane dioxygenase
RA	4,355,046	Δ1 bp	9.1%	coding (246/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,355,050:1	+C	9.0%	coding (250/681 nt)	modB →	molybdate ABC transporter permease ModB
RA	4,357,496	G→C	10.6%	V289L (GTG→CTG) ‡	PP_3831 →	hypothetical protein
RA	4,357,497	T→A	10.4%	V289E (GTG→GAG) ‡	PP_3831 →	hypothetical protein
RA	4,357,498	G→C	10.2%	V289V (GTG→GTC) ‡	PP_3831 →	hypothetical protein
RA	4,365,164	A→C	6.0%	intergenic (‑25/‑48)	PP_3841 ← / → PP_3842	MerR family transcriptional regulator/hypothetical protein
RA	4,365,165	G→T	6.9%	intergenic (‑26/‑47)	PP_3841 ← / → PP_3842	MerR family transcriptional regulator/hypothetical protein
RA	4,379,582	T→C	6.6%	intergenic (‑244/+179)	PP_3855 ← / ← PP_3856	hypothetical protein/hypothetical protein
RA	4,385,287	A→T	6.0%	V83V (GTT→GTA)	PP_3860 ←	FluMu protein gp47
RA	4,405,492	A→T	7.3%	F23L (TTT→TTA) ‡	PP_3886 ←	hypothetical protein
RA	4,405,493	A→T	7.3%	F23Y (TTT→TAT) ‡	PP_3886 ←	hypothetical protein
RA	4,405,494	A→T	7.3%	F23I (TTT→ATT) ‡	PP_3886 ←	hypothetical protein
RA	4,410,778	G→C	11.1%	H121Q (CAC→CAG)	PP_3894 ←	replication protein O
RA	4,422,819	C→T	6.5%	T43T (ACG→ACA)	PP_5645 ←	hypothetical protein
RA	4,445,250	C→G	12.7%	G117A (GGG→GCG) ‡	nicE ←	maleate isomerase
RA	4,445,251	C→G	12.7%	G117R (GGG→CGG) ‡	nicE ←	maleate isomerase
RA	4,446,491	G→C	6.3%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,494	G→C	6.2%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,852	T→C	8.0%	Q238R (CAG→CGG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,448,507	C→T	6.8%	L208L (CTG→TTG)	nicX →	2,5‑dihydroxypyridine 5,6‑dioxygenase
RA	4,454,776	G→A	6.9%	intergenic (‑174/+31)	nicS ← / ← PP_3950	HTH‑type transcriptional repressor NicS/methyl‑accepting chemotaxis transducer
RA	4,471,652	T→C	7.5%	intergenic (‑463/‑431)	PP_3961 ← / → PP_3962	transporter/hypothetical protein
RA	4,471,656	A→T	7.2%	intergenic (‑467/‑427)	PP_3961 ← / → PP_3962	transporter/hypothetical protein
RA	4,471,659	A→T	7.1%	intergenic (‑470/‑424)	PP_3961 ← / → PP_3962	transporter/hypothetical protein
RA	4,475,092	C→G	7.5%	P148P (CCG→CCC)	PP_3964 ←	transposase
RA	4,488,991	A→G	10.0%	intergenic (+344/+227)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,488,992	C→G	10.0%	intergenic (+345/+226)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,488,993	C→T	10.0%	intergenic (+346/+225)	PP_3981 → / ← PP_3982	transposase/hypothetical protein
RA	4,502,358	G→T	6.3%	intergenic (+150/‑14)	yccA → / → xanP	FtsH‑mediated proteolysis substrate/modulator/xanthine permease
RA	4,509,782	C→G	6.3%	A94P (GCC→CCC)	serS ←	serine‑‑tRNA ligase
RA	4,509,935	G→A	6.3%	R43C (CGC→TGC)	serS ←	serine‑‑tRNA ligase
RA	4,509,938	T→C	6.3%	T42A (ACC→GCC)	serS ←	serine‑‑tRNA ligase
RA	4,509,940	T→C	6.3%	Q41R (CAG→CGG)	serS ←	serine‑‑tRNA ligase
RA	4,517,232	A→C	9.3%	intergenic (+69/+17)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,233	A→T	9.3%	intergenic (+70/+16)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,517,234	G→T	10.0%	intergenic (+71/+15)	infA → / ← clpA	translation initiation factor IF‑1/ATP‑dependent serine protease
RA	4,528,353	T→A	6.6%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,530,025	T→A	9.6%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,026	T→A	11.9%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,557,990	C→G	8.4%	A56P (GCG→CCG)	PP_4045 ←	hypothetical protein
RA	4,557,995	C→G	7.0%	G54A (GGC→GCC)	PP_4045 ←	hypothetical protein
RA	4,563,656	G→A	6.3%	R69C (CGT→TGT)	vgrG‑III ←	type VI secretion system protein
RA	4,576,036	G→C	6.7%	G145R (GGC→CGC)	ybhP‑II →	phosphohydrolase
RA	4,576,050	G→A	6.8%	A149A (GCG→GCA)	ybhP‑II →	phosphohydrolase
RA	4,576,054	T→C	6.7%	C151R (TGC→CGC)	ybhP‑II →	phosphohydrolase
RA	4,578,135	T→G	8.5%	E659A (GAG→GCG) ‡	glgB ←	1,4‑alpha‑glucan branching enzyme
RA	4,578,136	C→A	8.8%	E659* (GAG→TAG) ‡	glgB ←	1,4‑alpha‑glucan branching enzyme
RA	4,578,141	C→G	9.5%	S657T (AGC→ACC)	glgB ←	1,4‑alpha‑glucan branching enzyme
RA	4,580,599	C→A	8.5%	Q943H (CAG→CAT) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,600	T→A	8.7%	Q943L (CAG→CTG) ‡	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,580,604	T→G	8.7%	K942Q (AAG→CAG)	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,588,160	G→A	7.1%	A9T (GCC→ACC)	ivd →	isovaleryl‑CoA dehydrogenase
RA	4,593,193	T→C	7.3%	D484D (GAT→GAC)	mccA →	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
RA	4,621,712	T→C	10.5%	intergenic (+305/+4259)	PP_5654 → / ← PP_4091	phosphotriesterase/transposase
RA	4,632,992	A→T	5.4%	W88R (TGG→AGG)	pgsA ←	CDP‑diacylglycerol‑glycerol‑3‑phosphate 3‑phosphatidyltransferase
RA	4,664,878	T→A	9.5%	Y4* (TAT→TAA)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,666,493	T→C	8.7%	S87P (TCG→CCG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,503	T→C	17.0%	M90T (ATG→ACG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,506	T→C	15.7%	L91P (CTC→CCC) ‡	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,507	C→G	15.1%	L91L (CTC→CTG) ‡	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,508	G→A	15.0%	G92S (GGC→AGC)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,666,511	G→A	16.0%	V93M (GTG→ATG)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,667,164	C→T	7.5%	L310L (CTC→CTT)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,678,243	C→G	8.7%	A111P (GCC→CCC)	ldcC ←	lysine decarboxylase
RA	4,687,589	T→C	11.7%	Y189H (TAC→CAC)	PP_4148 →	ABC transporter permease
RA	4,687,693	C→G	6.7%	I223M (ATC→ATG)	PP_4148 →	ABC transporter permease
RA	4,687,696:1	+A	6.7%	coding (672/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,701	Δ1 bp	6.7%	coding (677/1074 nt)	PP_4148 →	ABC transporter permease
RA	4,687,705	C→G	6.4%	V227V (GTC→GTG)	PP_4148 →	ABC transporter permease
RA	4,701,210	T→A	7.4%	Q62L (CAG→CTG)	kdpC ←	potassium‑transporting ATPase subunit C
RA	4,701,214	A→C	7.9%	F61V (TTC→GTC)	kdpC ←	potassium‑transporting ATPase subunit C
RA	4,701,215	G→T	7.9%	D60E (GAC→GAA)	kdpC ←	potassium‑transporting ATPase subunit C
RA	4,701,219	T→A	8.0%	Q59L (CAG→CTG)	kdpC ←	potassium‑transporting ATPase subunit C
RA	4,716,345	A→G	5.6%	N526D (AAC→GAC)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,716,352	G→T	5.5%	S528I (AGT→ATT)	PP_4173 →	two‑component system sensor histidine kinase/response regulator
RA	4,718,688	C→A	7.8%	intergenic (+32/+99)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,689	T→C	8.4%	intergenic (+33/+98)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,690	G→C	8.2%	intergenic (+34/+97)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,691	G→A	8.4%	intergenic (+35/+96)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,718,692	T→G	9.8%	intergenic (+36/+95)	fabB → / ← PP_4176	3‑oxoacyl‑ACP synthase/5‑oxo‑L‑prolinase
RA	4,726,572	T→C	8.3%	V270V (GTA→GTG)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,615	G→A	11.3%	A256V (GCG→GTG)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,619	T→C	9.1%	I255V (ATC→GTC)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,620	G→A	9.2%	D254D (GAC→GAT)	brnQ ←	branched‑chain amino acid transporter
RA	4,726,624	T→C	9.6%	H253R (CAC→CGC)	brnQ ←	branched‑chain amino acid transporter
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,839	C→G	15.5%	intergenic (+76/+677)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,841	T→A	18.3%	intergenic (+78/+675)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,842	T→A	13.2%	intergenic (+79/+674)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,844	C→G	21.2%	intergenic (+81/+672)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,762,842	C→G	5.2%	A60A (GCC→GCG)	pvdO →	pyoverdine biosynthesis‑like protein
RA	4,764,004	G→A	6.4%	A134A (GCG→GCA)	pvdE →	pyoverdine ABC transporter ATP‑binding protein/permease
RA	4,789,889	C→T	11.6%	L1317L (CTG→CTA) ‡	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,890	A→G	11.1%	L1317P (CTG→CCG) ‡	pvdI ←	non‑ribosomal peptide synthetase
RA	4,789,896	C→G	12.8%	G1315A (GGA→GCA)	pvdI ←	non‑ribosomal peptide synthetase
RA	4,796,604	A→G	17.4%	intergenic (‑162/+56)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,612	C→T	26.2%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,614	G→C	26.2%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,617	G→C	23.7%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,619	A→G	23.8%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,627	C→T	17.9%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,806,115	A→T	8.4%	S593T (TCG→ACG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,806,116	A→T	8.4%	R592R (CGT→CGA)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,820,812	T→C	6.1%	M3460V (ATG→GTG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,820,817	C→G	5.7%	S3458T (AGC→ACC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,842,896	Δ1 bp	13.6%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,904:1	+G	17.4%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,858,519	A→C	8.6%	intergenic (‑25/+200)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,858,520	G→T	7.1%	intergenic (‑26/+199)	PP_mr50 ← / ← ligA	Bacteria_large_SRP ncRNA/DNA ligase
RA	4,900,065	A→G	7.7%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	7.9%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	7.9%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	8.2%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,088	T→C	7.5%	intergenic (+49/‑449)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,904,996	A→C	7.5%	intergenic (‑163/+72)	PP_4312 ← / ← PP_4313	hypothetical protein/peptidylprolyl isomerase
RA	4,909,921	C→G	9.8%	intergenic (+314/+165)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,909,922	C→G	9.8%	intergenic (+315/+164)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,917,689	A→G	8.1%	I30V (ATC→GTC) ‡	PP_4328 →	hypothetical protein
RA	4,917,690	T→A	8.1%	I30N (ATC→AAC) ‡	PP_4328 →	hypothetical protein
RA	4,917,691	C→T	8.1%	I30I (ATC→ATT) ‡	PP_4328 →	hypothetical protein
RA	4,936,626	G→C	8.6%	intergenic (‑37/‑381)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,628	G→C	7.5%	intergenic (‑39/‑379)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,936,630	G→C	7.5%	intergenic (‑41/‑377)	flhA ← / → PP_4345	flagellar export pore protein/GntR family transcriptional regulator
RA	4,949,775	A→T	6.5%	I190N (ATT→AAT)	fliM ←	flagellar biosynthesis switching/energizing protein
RA	4,955,263	C→T	5.9%	A38T (GCC→ACC)	fliJ ←	flagellar protein FliJ
RA	4,965,021	G→A	100%	Q113* (CAA→TAA)	fleQ ←	transcriptional regulator FleQ
RA	4,971,954	G→T	13.5%	intergenic (‑389/+28)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,955	C→G	13.5%	intergenic (‑390/+27)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,971,956	A→C	12.9%	intergenic (‑391/+26)	PP_4379 ← / ← flgL	3‑oxoacyl‑ACP synthase/flagellar hook‑associated protein FlgL
RA	4,976,212	C→G	7.6%	D187H (GAC→CAC)	flgJ ←	peptidoglycan hydrolase FlgJ
RA	4,979,788	T→A	7.0%	D141V (GAC→GTC)	flgF ←	flagellar basal‑body rod protein FlgF
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,986,048	C→G	5.3%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	4,988,362	G→C	7.9%	intergenic (+32/+62)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,364	T→G	7.8%	intergenic (+34/+60)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	4,988,365	G→C	7.3%	intergenic (+35/+59)	ycgR → / ← PP_4398	flagellar brake protein YcgR/MFS transporter
RA	5,019,947	G→A	6.8%	G55G (GGC→GGT)	PP_4423 ←	hypothetical protein
RA	5,028,905	G→A	6.7%	K391K (AAG→AAA)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,916	A→G	6.2%	K395R (AAG→AGG) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,917	G→T	5.9%	K395N (AAG→AAT) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,918	G→C	5.9%	D396H (GAC→CAC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,919	A→C	5.8%	D396A (GAC→GCC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,920	C→T	6.1%	D396D (GAC→GAT) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,046,442	A→G	7.1%	K134E (AAG→GAG)	PP_4450 →	phosphoglycerate mutase family protein
RA	5,074,670	T→C	9.0%	intergenic (‑107/‑75)	PP_5692 ← / → PP_4468	hypothetical protein/Cro/CI family transcriptional regulator
RA	5,077,234	G→T	5.8%	intergenic (+29/+79)	PP_4470 → / ← mgtE	Arc domain‑containing transcriptional regulator/magnesium transporter
RA	5,079,126	T→A	11.1%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,079,129	T→A	10.7%	intergenic (‑374/+23)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,082,380	G→A	5.8%	T629I (ACC→ATC)	alaS ←	alanine‑‑tRNA ligase
RA	5,092,225	A→G	5.1%	I27T (ATT→ACT)	astC ←	acetylornithine aminotransferase
RA	5,099,701	C→T	6.1%	G14G (GGC→GGT)	PP_4488 →	hypothetical protein
RA	5,112,011	T→C	5.5%	D134G (GAC→GGC)	rluB ←	23S rRNA pseudouridylate synthase B
RA	5,112,015	T→C	5.8%	T133A (ACC→GCC)	rluB ←	23S rRNA pseudouridylate synthase B
RA	5,113,912	Δ1 bp	6.3%	coding (407/888 nt)	scpA ←	segregation and condensation protein A
RA	5,119,195	G→C	9.9%	L323L (CTG→CTC)	PP_4505 →	sensor histidine kinase
RA	5,119,196	G→C	8.5%	E324Q (GAG→CAG)	PP_4505 →	sensor histidine kinase
RA	5,149,180	G→C	7.9%	intergenic (‑166/+282)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,149,183	G→C	8.1%	intergenic (‑169/+279)	PP_mr51 ← / ← PP_4535	C4 ncRNA/hypothetical protein
RA	5,154,168	G→T	7.6%	F15L (TTC→TTA)	PP_4537 ←	membrane protein
RA	5,169,719	A→C	6.7%	D446A (GAC→GCC)	PP_4547 →	glutamine synthetase
RA	5,169,724	C→T	7.0%	R448C (CGC→TGC)	PP_4547 →	glutamine synthetase
RA	5,169,727	T→A	7.0%	W449R (TGG→AGG)	PP_4547 →	glutamine synthetase
RA	5,169,734	T→A	7.3%	L451Q (CTG→CAG)	PP_4547 →	glutamine synthetase
RA	5,169,737	A→G	7.4%	H452R (CAC→CGC)	PP_4547 →	glutamine synthetase
RA	5,169,742	G→T	7.5%	A454S (GCC→TCC)	PP_4547 →	glutamine synthetase
RA	5,180,012	C→G	8.4%	intergenic (‑240/‑43)	PP_4557 ← / → PP_4558	hypothetical protein/GNAT family acetyltransferase
RA	5,182,059	G→T	14.8%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	16.7%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	15.0%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,923	G→C	7.9%	H271D (CAT→GAT)	PP_4563 ←	hypothetical protein
RA	5,182,924	G→C	8.2%	I270M (ATC→ATG)	PP_4563 ←	hypothetical protein
RA	5,194,887	T→G	13.0%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,212,487	A→G	11.6%	intergenic (+51/+43)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,488	C→A	11.6%	intergenic (+52/+42)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,491	T→G	11.7%	intergenic (+55/+39)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,212,492	C→T	11.6%	intergenic (+56/+38)	PP_4593 → / ← PP_4594	hypothetical protein/cystathionine gamma‑synthase
RA	5,220,277	C→T	10.7%	A153T (GCC→ACC)	moaB‑II ←	molybdenum cofactor biosynthesis protein B
RA	5,227,283:1	+T	9.5%	coding (1776/2391 nt)	PP_4606 ←	ferric siderophore receptor
RA	5,229,179	G→A	8.2%	intergenic (‑121/+55)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,191	Δ1 bp	15.4%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,195	C→G	15.4%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,198	C→G	15.3%	intergenic (‑140/+36)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,201:1	+C	15.8%	intergenic (‑143/+33)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,213	T→C	10.6%	intergenic (‑155/+21)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,239,884	G→A	8.5%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,889	T→C	8.7%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,241,585	A→C	100%	V96G (GTG→GGG)	hmgC ←	maleylacetoacetate isomerase
RA	5,257,689	A→C	9.4%	V38G (GTG→GGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,696	G→C	10.0%	P36A (CCG→GCG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,697	G→C	10.0%	R35R (CGC→CGG)	PP_4634 ←	alpha/beta family hydrolase
RA	5,266,830	C→A	8.0%	D22E (GAC→GAA)	PP_4642 →	cyclic diguanosine monophosphate‑binding protein
RA	5,266,831	T→G	8.6%	F23V (TTC→GTC)	PP_4642 →	cyclic diguanosine monophosphate‑binding protein
RA	5,297,191	A→C	9.5%	S58A (TCG→GCG)	TpbB ←	diguanylate cyclase
RA	5,297,192	G→C	9.6%	R57R (CGC→CGG)	TpbB ←	diguanylate cyclase
RA	5,297,195	G→C	9.6%	A56A (GCC→GCG) ‡	TpbB ←	diguanylate cyclase
RA	5,297,196	G→T	10.9%	A56D (GCC→GAC) ‡	TpbB ←	diguanylate cyclase
RA	5,319,755	C→T	5.3%	intergenic (‑382/+27)	ilvI ← / ← PP_4681	acetohydroxybutanoate synthase/acetolactate synthase/hypothetical protein
RA	5,319,933	A→C	17.4%	M62R (ATG→AGG)	PP_4681 ←	hypothetical protein
RA	5,319,937	G→C	17.7%	R61G (CGC→GGC)	PP_4681 ←	hypothetical protein
RA	5,319,938	G→C	17.4%	P60P (CCC→CCG) ‡	PP_4681 ←	hypothetical protein
RA	5,319,939	G→C	17.8%	P60R (CCC→CGC) ‡	PP_4681 ←	hypothetical protein
RA	5,319,943	G→T	17.5%	L59M (CTG→ATG)	PP_4681 ←	hypothetical protein
RA	5,325,511	T→A	7.0%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,336,737:1	+T	11.1%	coding (187/1443 nt)	PP_4696 →	nitrogen regulation protein NR(I)
RA	5,336,743	Δ1 bp	10.5%	coding (193/1443 nt)	PP_4696 →	nitrogen regulation protein NR(I)
RA	5,341,584	G→T	11.8%	V231L (GTG→TTG) ‡	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,586	G→C	12.0%	V231V (GTG→GTC) ‡	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,341,588	A→C	12.0%	K232T (AAG→ACG)	panB →	3‑methyl‑2‑oxobutanoate hydroxymethyltransferase
RA	5,344,461:1	+C	11.8%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,461:2	+T	11.8%	intergenic (+36/‑142)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,467	C→G	12.5%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,471	C→T	12.1%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,480	A→G	14.4%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,484	C→G	11.8%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,489	Δ1 bp	11.4%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,490	Δ1 bp	11.1%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,353,366	A→G	6.0%	F251L (TTC→CTC)	pnp ←	polyribonucleotide nucleotidyltransferase
RA	5,353,367	C→T	5.9%	E250E (GAG→GAA)	pnp ←	polyribonucleotide nucleotidyltransferase
RA	5,354,033	G→A	7.4%	G28G (GGC→GGT)	pnp ←	polyribonucleotide nucleotidyltransferase
RA	5,354,658	T→C	11.6%	G11G (GGA→GGG)  noncoding (17/97 nt)	rpsO ← PP_mr54 ←	30S ribosomal protein S15 S15 regulatory region
RA	5,354,671	G→A	8.9%	T7I (ACC→ATC)  noncoding (4/97 nt)	rpsO ← PP_mr54 ←	30S ribosomal protein S15 S15 regulatory region
RA	5,363,063	G→T	8.6%	L235I (CTC→ATC)	glmM ←	phosphoglucosamine mutase
RA	5,363,064	A→C	8.6%	D234E (GAT→GAG)	glmM ←	phosphoglucosamine mutase
RA	5,368,670	G→T	7.1%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,368,671	A→C	7.5%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,373,225	A→G	7.2%	noncoding (59/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,233	A→G	9.8%	noncoding (67/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,235	G→C	9.6%	noncoding (69/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,236	G→C	9.6%	noncoding (70/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,238	C→T	10.0%	noncoding (72/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,373,246	C→T	8.5%	noncoding (80/82 nt)	PP_mr55 →	P31 ncRNA
RA	5,378,884	C→G	7.7%	R157G (CGC→GGC)	recN →	DNA repair/recombination protein
RA	5,381,267	T→C	9.3%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	10.1%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	9.1%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,390,663	T→A	6.2%	noncoding (31/87 nt)	PP_mr56 →	C4 ncRNA
RA	5,390,664	T→A	6.3%	noncoding (32/87 nt)	PP_mr56 →	C4 ncRNA
RA	5,391,824	G→T	6.4%	L24L (CTC→CTA) ‡	PP_5709 ←	hypothetical protein
RA	5,391,825	A→C	6.7%	L24R (CTC→CGC) ‡	PP_5709 ←	hypothetical protein
RA	5,421,334	C→A	6.1%	D174Y (GAC→TAC)	PP_4761 ←	haloacid dehalogenase‑like family hydrolase
RA	5,427,281	G→A	9.4%	I274I (ATC→ATT)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,288	T→A	8.0%	D272V (GAC→GTC)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,427,295	T→C	7.7%	N270D (AAT→GAT)	rhlE‑I ←	ATP‑dependent RNA helicase
RA	5,438,832	G→T	5.1%	T175K (ACG→AAG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	5,457,903	G→A	6.6%	L545L (CTG→CTA)	leuS →	leucine‑‑tRNA ligase
RA	5,458,541	T→C	6.8%	L758P (CTG→CCG)	leuS →	leucine‑‑tRNA ligase
RA	5,459,232	A→T	9.3%	D99V (GAC→GTC)	PP_4795 →	lipoprotein
RA	5,464,858	A→T	7.7%	L87Q (CTG→CAG)	lipB ←	octanoyltransferase
RA	5,464,864	G→C	7.1%	A85G (GCC→GGC)	lipB ←	octanoyltransferase
RA	5,464,866	C→T	7.8%	V84V (GTG→GTA)	lipB ←	octanoyltransferase
RA	5,468,073:1	+A	5.7%	coding (819/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,468,078	Δ1 bp	5.9%	coding (814/1047 nt)	mltB ←	membrane‑bound lytic murein transglycosylase B
RA	5,479,939:1	+G	6.2%	coding (463/993 nt)	prmA →	ribosomal protein L11 methyltransferase
RA	5,485,159	G→A	15.8%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,488,151	G→A	92.0%	E494K (GAG→AAG)	PP_4824 →	two‑component system sensor histidine kinase/response regulator
RA	5,498,135	C→T	8.5%	A403V (GCG→GTG)  R2C (CGT→TGT)	cobL → cbiD →	precorrin‑6Y C(5,15)‑methyltransferase cobalt‑precorrin‑6A synthase
RA	5,503,135	C→A	9.2%	L29M (CTG→ATG) ‡	oprC →	copper receptor OprC
RA	5,503,136	T→G	9.4%	L29R (CTG→CGG) ‡	oprC →	copper receptor OprC
RA	5,503,142	C→G	9.8%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,503,148	C→A	9.1%	P33H (CCT→CAT) ‡	oprC →	copper receptor OprC
RA	5,503,149	T→G	8.7%	P33P (CCT→CCG) ‡	oprC →	copper receptor OprC
RA	5,518,734	T→A	11.6%	K59N (AAA→AAT) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,735	T→A	11.6%	K59I (AAA→ATA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,518,736	T→A	11.6%	K59* (AAA→TAA) ‡	PP_4851 ←	phosphate starvation‑inducible protein PsiF
RA	5,529,189	A→C	6.1%	intergenic (‑403/+191)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,529,360	C→G	12.1%	intergenic (‑574/+20)	ydfG ← / ← livF‑II	bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/malonic semialdehyde reductase/ABC transporter ATP‑binding protein
RA	5,535,236	C→T	6.8%	P85S (CCC→TCC)	pncB →	nicotinate phosphoribosyltransferase
RA	5,538,569	A→T	16.4%	intergenic (+59/+62)	PP_4871 → / ← PP_4872	lysine decarboxylase family protein/hypothetical protein
RA	5,539,112	G→T	7.0%	T625K (ACG→AAG) ‡	PP_4872 ←	hypothetical protein
RA	5,539,113	T→C	5.7%	T625A (ACG→GCG) ‡	PP_4872 ←	hypothetical protein
RA	5,539,119	A→C	5.6%	S623A (TCG→GCG)	PP_4872 ←	hypothetical protein
RA	5,552,913	T→G	5.2%	intergenic (+576/+85)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,914	T→A	5.2%	intergenic (+577/+84)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
RA	5,552,915	C→A	9.6%	intergenic (+578/+83)	PP_4882 → / ← PP_5717	iron ABC transporter permease/hypothetical protein
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,558,505	A→T	7.2%	S250T (TCC→ACC)	purA ←	adenylosuccinate synthetase
RA	5,558,507	A→T	7.2%	I249N (ATT→AAT)	purA ←	adenylosuccinate synthetase
RA	5,558,509	A→T	7.3%	G248G (GGT→GGA)	purA ←	adenylosuccinate synthetase
RA	5,561,959	T→A	7.4%	D309V (GAC→GTC)	hflK ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,570,177	T→G	7.5%	A24A (GCA→GCC)	nnrD ←	ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase
RA	5,582,559	A→G	6.6%	intergenic (+136/+31)	PP_4910 → / ← PP_4911	hypothetical protein/hypothetical protein
RA	5,583,521	T→C	10.9%	P737P (CCA→CCG)	parC ←	DNA topoisomerase IV subunit A
RA	5,583,528	T→A	10.5%	K735M (AAG→ATG) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,583,529	T→A	12.7%	K735* (AAG→TAG) ‡	parC ←	DNA topoisomerase IV subunit A
RA	5,587,815	G→T	6.1%	R445S (CGC→AGC)	parE ←	DNA topoisomerase IV subunit B
RA	5,587,816	C→G	5.9%	L444L (CTG→CTC) ‡	parE ←	DNA topoisomerase IV subunit B
RA	5,587,817	A→C	5.6%	L444R (CTG→CGG) ‡	parE ←	DNA topoisomerase IV subunit B
RA	5,622,479	A→G	6.3%	L420P (CTG→CCG)	PP_4941 ←	hypothetical protein
RA	5,634,457	T→G	6.1%	intergenic (+33/+350)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,634,458	C→A	7.0%	intergenic (+34/+349)	putA → / ← PP_5718	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase/membrane protein
RA	5,641,455	C→G	14.0%	S373C (TCC→TGC)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,641,460	C→G	11.6%	Q375E (CAG→GAG)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,643,261	G→A	13.6%	intergenic (+46/‑77)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,262	C→T	13.3%	intergenic (+47/‑76)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,263	A→G	13.0%	intergenic (+48/‑75)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,267	A→C	13.3%	intergenic (+52/‑71)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,270	G→T	13.4%	intergenic (+55/‑68)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,274	C→T	13.3%	intergenic (+59/‑64)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,275	A→G	13.3%	intergenic (+60/‑63)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,643,276	T→C	13.6%	intergenic (+61/‑62)	dbpA → / → yhiN	23S rRNA specific ATP‑dependent RNA helicase/FAD/NAD(P)‑binding domain‑containing oxidoreductase
RA	5,645,307	C→T	9.2%	A220A (GCC→GCT)	PP_4954 →	membrane protein
RA	5,645,311	C→T	8.6%	L222L (CTG→TTG) ‡	PP_4954 →	membrane protein
RA	5,645,313	G→C	8.8%	L222L (CTG→CTC) ‡	PP_4954 →	membrane protein
RA	5,645,315	A→G	9.1%	N223S (AAC→AGC)	PP_4954 →	membrane protein
RA	5,645,319	A→G	8.6%	A224A (GCA→GCG)	PP_4954 →	membrane protein
RA	5,650,674	A→C	12.4%	H173Q (CAT→CAG) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,675	T→A	12.7%	H173L (CAT→CTT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,650,676	G→T	12.6%	H173N (CAT→AAT) ‡	PP_4959 ←	diguanylate cyclase
RA	5,655,626:1	+A	15.6%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,631	T→G	18.2%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,636	C→A	18.7%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,641	Δ1 bp	17.6%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,667,258	G→T	6.6%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	7.0%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,269	G→T	7.0%	intergenic (+47/+24)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,670,443	T→A	6.8%	intergenic (+32/‑53)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,453	G→A	7.0%	intergenic (+42/‑43)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,457	A→T	7.2%	intergenic (+46/‑39)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,458	T→A	7.0%	intergenic (+47/‑38)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,459	A→T	7.6%	intergenic (+48/‑37)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,670,463	T→C	7.4%	intergenic (+52/‑33)	metF → / → PP_4978	5,10‑methylenetetrahydrofolate reductase/hypothetical protein
RA	5,672,372	G→C	6.3%	G208R (GGC→CGC)	PP_4979 →	substrate‑binding protein
RA	5,674,134	C→T	5.6%	R459R (CGC→CGT)	rhlE‑II →	ATP‑dependent RNA helicase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,138	A→G	10.0%	D255G (GAC→GGC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,142	G→T	9.5%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,143	A→C	9.5%	I257L (ATC→CTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,147	C→T	9.2%	A258V (GCC→GTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	94.5%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,683,673	A→G	8.0%	F1074L (TTC→CTC)	PP_4988 ←	signal transduction histidine kinase CheA/CheY‑like receiver
RA	5,690,616	C→G	7.5%	I12M (ATC→ATG)	gshB →	glutathione synthetase
RA	5,700,058	A→C	6.6%	D179A (GAT→GCT)	phaA →	poly(3‑hydroxyalkanoate) polymerase
RA	5,707,112	T→C	6.1%	L377P (CTG→CCG) ‡	PP_5009 →	hypothetical protein
RA	5,707,113	G→C	6.1%	L377L (CTG→CTC) ‡	PP_5009 →	hypothetical protein
RA	5,712,763	T→C	10.8%	F71S (TTC→TCC)	ubiB →	2‑octaprenylphenol hydroxylase
RA	5,737,602	G→C	7.8%	intergenic (‑157/+45)	hutU ← / ← PP_5034	urocanate hydratase/hypothetical protein
RA	5,740,467	T→G	22.4%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,470	A→T	19.6%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,471	A→T	15.8%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,474	C→A	16.7%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,484	T→C	15.1%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,448	A→C	8.6%	intergenic (‑119/+109)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,741,508	A→T	7.6%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
JC	5,743,332	Δ62 bp	7.6%	intergenic (‑165/+21)	fbp ← / ← glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
RA	5,743,847	A→C	7.1%	L673R (CTC→CGC)	glgP ←	glycogen phosphorylase
RA	5,743,850	G→T	8.3%	A672E (GCG→GAG)	glgP ←	glycogen phosphorylase
RA	5,748,120	C→T	5.4%	intergenic (‑147/+39)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,122	T→G	5.4%	intergenic (‑149/+37)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,123	T→A	5.4%	intergenic (‑150/+36)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,124	T→A	5.4%	intergenic (‑151/+35)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,125	C→A	5.1%	intergenic (‑152/+34)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,748,127	A→G	5.4%	intergenic (‑154/+32)	PP_5043 ← / ← typA	PhoPQ‑activated pathogenicity‑like protein/ribosome associated GTPase
RA	5,762,503	T→A	6.9%	intergenic (+19/‑122)	gpmI → / → PP_5057	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/M23/M37 family peptidase
RA	5,767,350	C→A	5.6%	M1174I (ATG→ATT) ‡	PP_5060 ←	hypothetical protein
RA	5,767,352	T→G	5.5%	M1174L (ATG→CTG) ‡	PP_5060 ←	hypothetical protein
RA	5,779,044	C→A	5.1%	Q177H (CAG→CAT)	PP_5065 ←	hypothetical protein
RA	5,790,143	A→T	10.2%	intergenic (+22/+46)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,150	A→G	8.9%	intergenic (+29/+39)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,151	C→G	8.6%	intergenic (+30/+38)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,152	C→T	8.5%	intergenic (+31/+37)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,801,450	T→C	11.7%	I47M (ATA→ATG)	aroK ←	shikimate kinase
RA	5,801,455	A→C	9.7%	W46G (TGG→GGG)	aroK ←	shikimate kinase
RA	5,801,456	C→G	10.2%	P45P (CCG→CCC) ‡	aroK ←	shikimate kinase
RA	5,801,457	G→T	11.4%	P45Q (CCG→CAG) ‡	aroK ←	shikimate kinase
RA	5,801,462	G→A	10.6%	N43N (AAC→AAT)	aroK ←	shikimate kinase
RA	5,807,984	A→G	10.0%	intergenic (+119/+36)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,985	T→C	6.7%	intergenic (+120/+35)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,986	G→A	9.4%	intergenic (+121/+34)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,807,987	C→T	9.4%	intergenic (+122/+33)	mrcA → / ← maeB	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase/malic enzyme B
RA	5,815,544	A→G	10.6%	intergenic (+28/+63)	PP_5090 → / ← PP_5091	cell division protein/membrane protein
RA	5,816,531	C→G	11.5%	A114G (GCC→GGC)	PP_5092 →	NLP/P60 protein
RA	5,822,424	C→T	8.3%	G128G (GGC→GGT)	PP_5099 →	hypothetical protein
RA	5,824,712	T→G	10.3%	intergenic (+136/+38)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,713	T→A	9.0%	intergenic (+137/+37)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,714	T→A	8.4%	intergenic (+138/+36)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,824,715	C→A	11.4%	intergenic (+139/+35)	PP_5102 → / ← trmB	hypothetical protein/tRNA (guanosine(46)‑N7)‑methyltransferase TrmB
RA	5,839,686	T→A	11.8%	intergenic (+63/+40)	yheT → / ← sseA	putative hydrolase/3‑mercaptopyruvate sulfurtransferase
RA	5,845,218	T→G	8.4%	P43P (CCT→CCG)	coaD →	phosphopantetheine adenylyltransferase
RA	5,864,711	C→T	5.9%	L480L (CTG→CTA)	cadA‑III ←	cadmium translocating P‑type ATPase
RA	5,890,791	A→C	11.5%	intergenic (+79/+41)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,792	A→T	11.2%	intergenic (+80/+40)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,890,793	G→T	11.1%	intergenic (+81/+39)	PP_5164 → / ← plpB	penicillin amidase family protein/NLPA lipoprotein
RA	5,897,770	A→G	10.9%	intergenic (‑170/+64)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,773	G→A	10.8%	intergenic (‑173/+61)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,778	C→G	11.1%	intergenic (‑178/+56)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,779	G→C	12.4%	intergenic (‑179/+55)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,782	G→C	10.5%	intergenic (‑182/+52)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,783	C→G	10.9%	intergenic (‑183/+51)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,788	T→C	8.9%	intergenic (‑188/+46)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,897,791	C→T	11.1%	intergenic (‑191/+43)	PP_5172 ← / ← PP_5173	hypothetical protein/RND family transporter
RA	5,903,165	A→C	9.3%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,914,124	C→T	12.9%	intergenic (+16/+137)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,126	C→G	11.4%	intergenic (+18/+135)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,914,128	A→G	11.6%	intergenic (+20/+133)	spuI → / ← argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
RA	5,923,706	A→C	10.0%	L242R (CTG→CGG) ‡	gcvP‑II ←	glycine dehydrogenase
RA	5,923,707	G→T	10.0%	L242M (CTG→ATG) ‡	gcvP‑II ←	glycine dehydrogenase
RA	5,954,925	G→A	7.3%	G26G (GGC→GGT)	PP_5219 ←	membrane protein
RA	5,970,525	A→G	6.7%	W257R (TGG→CGG)	PP_5236 ←	hypothetical protein
RA	5,970,526	G→C	6.7%	R256R (CGC→CGG) ‡	PP_5236 ←	hypothetical protein
RA	5,970,527	C→T	6.6%	R256H (CGC→CAC) ‡	PP_5236 ←	hypothetical protein
RA	5,970,533	A→G	7.4%	L254P (CTG→CCG)	PP_5236 ←	hypothetical protein
RA	5,975,672	C→T	10.4%	intergenic (+616/‑528)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,677	A→T	10.6%	intergenic (+621/‑523)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,678	T→A	10.6%	intergenic (+622/‑522)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,679	A→T	11.2%	intergenic (+623/‑521)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,975,684	A→G	10.2%	intergenic (+628/‑516)	PP_5727 → / → yifB	hypothetical protein/ATP‑dependent chelatase
RA	5,981,882	T→C	6.0%	W843R (TGG→CGG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,981,889	A→C	6.4%	Q845P (CAG→CCG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,988,809	G→A	24.7%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	23.9%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	22.2%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	22.0%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	22.2%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	21.0%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	21.6%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	23.3%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	20.8%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	21.8%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	20.6%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	20.5%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	25.9%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	33.6%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	32.9%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	34.2%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	31.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,994,761	G→C	14.6%	V496V (GTG→GTC)	PP_5251 →	transporter
RA	5,994,765:1	+G	13.2%	coding (1492/1599 nt)	PP_5251 →	transporter
RA	5,995,016	G→A	14.0%	intergenic (+144/+33)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,018	T→A	14.6%	intergenic (+146/+31)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	5,995,020	T→C	14.5%	intergenic (+148/+29)	PP_5251 → / ← PP_5252	transporter/hypothetical protein
RA	6,004,526	G→T	6.1%	G152V (GGC→GTC) ‡	PP_5259 →	LysR family transcriptional regulator
RA	6,004,527	C→G	6.3%	G152G (GGC→GGG) ‡	PP_5259 →	LysR family transcriptional regulator
RA	6,004,528	A→C	6.2%	T153P (ACC→CCC)	PP_5259 →	LysR family transcriptional regulator
RA	6,004,968	T→C	7.5%	intergenic (+6/‑170)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,973	G→C	11.1%	intergenic (+11/‑165)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,987	T→G	16.4%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,994	G→C	14.8%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	14.6%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	16.7%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,007	C→A	16.4%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,021	G→C	7.0%	intergenic (+59/‑117)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,013,836	G→A	12.7%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	13.0%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,845	G→C	13.0%	intergenic (+50/+60)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,846	T→G	15.4%	intergenic (+51/+59)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,847	C→T	14.0%	intergenic (+52/+58)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,852	A→G	12.1%	intergenic (+57/+53)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,853	C→A	9.9%	intergenic (+58/+52)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,854	G→C	13.3%	intergenic (+59/+51)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,861	C→T	13.2%	intergenic (+66/+44)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,863	T→C	14.0%	intergenic (+68/+42)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,026,542	G→T	7.2%	V472L (GTG→TTG) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,544	G→T	7.2%	V472V (GTG→GTT) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,545	A→C	6.7%	K473Q (AAA→CAA) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,547	A→C	7.2%	K473N (AAA→AAC) ‡	PP_5276 →	phospholipase D family protein
RA	6,039,236	C→T	6.8%	intergenic (‑256/+38)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,240	G→T	7.0%	intergenic (‑260/+34)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,241	A→C	7.0%	intergenic (‑261/+33)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,039,245	A→G	7.1%	intergenic (‑265/+29)	PP_5290 ← / ← pyrE	transposase/orotate phosphoribosyltransferase
RA	6,040,794	T→A	13.1%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,053,543	Δ1 bp	6.2%	intergenic (‑77/‑114)	PP_5305 ← / → exbB	epimerase/dehydratase‑like protein/biopolymer transport protein ExbB
RA	6,053,544	Δ1 bp	6.3%	intergenic (‑78/‑113)	PP_5305 ← / → exbB	epimerase/dehydratase‑like protein/biopolymer transport protein ExbB
RA	6,056,467	C→G	8.5%	H198Q (CAC→CAG)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator
JC	6,056,667	Δ6 bp	91.8%	coding (794‑799/927 nt)	oxyR →	oxidative and nitrosative stress transcriptional dual regulator
RA	6,060,463	G→T	5.5%	intergenic (+99/+82)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,464	A→T	6.3%	intergenic (+100/+81)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,465	A→C	5.4%	intergenic (+101/+80)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,061,025	T→C	5.2%	intergenic (‑106/+43)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,026	T→C	5.2%	intergenic (‑107/+42)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,027	G→A	5.4%	intergenic (‑108/+41)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,061,028	G→A	5.4%	intergenic (‑109/+40)	PP_5312 ← / ← hupA	hypothetical protein/DNA‑binding protein HU‑alpha
RA	6,062,645	T→C	6.5%	E20G (GAA→GGA)	alkT ←	rubredoxin‑NAD(+) reductase
RA	6,073,536	G→T	5.2%	H240Q (CAC→CAA)	PP_5327 ←	phosphate ABC transporter permease
RA	6,075,775	G→A	10.0%	H263Y (CAC→TAC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,103,777	T→G	9.6%	F204V (TTC→GTC) ‡	PP_5353 →	hypothetical protein
RA	6,103,778	T→A	10.0%	F204Y (TTC→TAC) ‡	PP_5353 →	hypothetical protein
RA	6,103,779	C→A	10.0%	F204L (TTC→TTA) ‡	PP_5353 →	hypothetical protein
RA	6,111,188	G→C	9.2%	P108A (CCA→GCA)	PP_5361 ←	protein P47K
RA	6,138,932	A→G	8.5%	Y46C (TAC→TGC)	cusB →	CzcB family copper RND transporter membrane fusion protein
RA	6,155,204	A→T	20.4%	intergenic (‑14/+192)	PP_5398 ← / ← PP_5399	transposase/hypothetical protein
RA	6,155,227	A→T	17.7%	intergenic (‑37/+169)	PP_5398 ← / ← PP_5399	transposase/hypothetical protein
RA	6,155,242	C→G	19.7%	intergenic (‑52/+154)	PP_5398 ← / ← PP_5399	transposase/hypothetical protein
RA	6,171,854	C→A	5.3%	A150S (GCG→TCG)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,859	T→C	5.4%	K148R (AAG→AGG)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,861	A→T	5.3%	L147L (CTT→CTA)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,171,868	T→G	5.7%	D145A (GAC→GCC)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,174,708	G→T	9.0%	intergenic (‑70/+49)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,174,709	A→C	8.7%	intergenic (‑71/+48)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,178,242	C→G	9.7%	R279P (CGC→CCC)	atpA ←	ATP synthase subunit alpha

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	171364–176293	176293	1–4930	17 [14]	[15] 19	PP_16SA–[PP_5SA]	PP_16SA,PP_23SA,[PP_5SA]
*	*	÷	NC_002947	176643–181707	181707	1–5065	17 [16]	[15] 17	PP_16SB–[PP_r01]	PP_16SB,PP_23SB,[PP_r01]
*	*	÷	NC_002947	1367580	1367831	252	18 [13]	[14] 17	PP_1193	membrane protein
*	*	÷	NC_002947	1425779–1427601	1430061–1429537	1937–4283	17 [16]	[15] 18	PP_1250–[PP_1252]	PP_1250,mqo‑II,[PP_1252]
*	*	÷	NC_002947	2038181	2038350	170	17 [16]	[15] 17	[rffE]	[rffE]
*	*	÷	NC_002947	2837055	2837256	202	17 [16]	[16] 19	[PP_2489]	[PP_2489]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 60129	54 (1.090)	4 (0.090)	4/240	NT	7.5%	coding (480/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 60157	48 (1.040)					coding (452/1293 nt)	PP_0051	sigma‑54 dependent transcriptional regulator
*	?	NC_002947	71964 =	59 (1.200)	3 (0.060)	3/248	NT	5.3%	coding (885/948 nt)	glyQ	glycine‑tRNA ligase subunit alpha
	?	NC_002947	72012 =	50 (1.050)					coding (837/948 nt)	glyQ	glycine‑tRNA ligase subunit alpha
*	?	NC_002947	78329 =	49 (0.990)	4 (0.090)	4/244	NT	7.9%	coding (144/933 nt)	fmt	methionyl‑tRNA formyltransferase
	?	NC_002947	78374 =	47 (1.000)					coding (99/933 nt)	fmt	methionyl‑tRNA formyltransferase
*	?	NC_002947	= 79432	38 (0.770)	6 (0.130)	4/244	NT	13.9%	coding (187/1098 nt)	PP_0069	rossmann fold nucleotide‑binding protein
	?	NC_002947	= 79457	38 (0.810)					coding (212/1098 nt)	PP_0069	rossmann fold nucleotide‑binding protein
*	?	NC_002947	= 106360	70 (1.420)	4 (0.090)	4/242	NT	5.7%	coding (227/1518 nt)	PP_0101	sulfate transporter
	?	NC_002947	= 106389	67 (1.440)					coding (256/1518 nt)	PP_0101	sulfate transporter
*	?	NC_002947	= 137335	55 (1.110)	6 (0.130)	4/240	NT	10.5%	coding (236/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
	?	NC_002947	= 137379	51 (1.100)					coding (280/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
*	?	NC_002947	= 174906	NA (NA)	5 (0.110)	5/246	NT	NA	noncoding (1704/2902 nt)	PP_23SA	23S ribosomal RNA
	?	NC_002947	= 174936	NA (NA)					noncoding (1734/2902 nt)	PP_23SA	23S ribosomal RNA
*	?	NC_002947	= 192172	31 (0.630)	4 (0.090)	4/238	NT	11.8%	coding (1346/2157 nt)	paxB	toxin secretion ATP‑binding protein
	?	NC_002947	= 192235	31 (0.680)					coding (1283/2157 nt)	paxB	toxin secretion ATP‑binding protein
*	?	NC_002947	= 199771	61 (1.240)	4 (0.080)	3/248	NT	5.9%	coding (5277/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 199796	68 (1.420)					coding (5302/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	216967 =	54 (1.090)	12 (0.250)	7/248	NT	19.3%	coding (22473/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	217038 =	48 (1.000)					coding (22544/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 237802	64 (1.300)	4 (0.090)	4/242	NT	6.0%	coding (683/744 nt)	algR	alginate biosynthesis regulatory protein
	?	NC_002947	= 237820	64 (1.370)					coding (701/744 nt)	algR	alginate biosynthesis regulatory protein
*	?	NC_002947	= 250236	35 (0.710)	3 (0.070)	3/236	NT	7.9%	coding (967/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 250260	38 (0.840)					coding (943/1347 nt)	nfeD	membrane bound peptidase NefD
*	?	NC_002947	259606 =	68 (1.380)	4 (0.080)	3/246	NT	6.4%	coding (1140/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	259644 =	52 (1.100)					coding (1178/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
*	?	NC_002947	266739 =	58 (1.170)	4 (0.090)	4/242	NT	7.6%	coding (449/1260 nt)	PP_0215	two‑component system response regulator
	?	NC_002947	266776 =	42 (0.900)					coding (486/1260 nt)	PP_0215	two‑component system response regulator
*	?	NC_002947	= 279658	42 (0.850)	3 (0.060)	3/246	NT	6.4%	coding (591/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 279717	47 (0.990)					coding (532/669 nt)	sctS	sulfur compound ABC transporter permease
*	?	NC_002947	286998 =	53 (1.070)	10 (0.210)	9/248	NT	15.3%	coding (125/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
	?	NC_002947	287027 =	59 (1.230)					coding (96/789 nt)	tauB‑II	taurine ABC transporter ATP‑binding protein
*	?	NC_002947	345396 =	41 (0.830)	4 (0.090)	4/244	NT	8.8%	coding (207/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	345422 =	44 (0.940)					coding (181/1068 nt)	mutY	A/G‑specific adenine glycosylase
*	?	NC_002947	= 352291	54 (1.090)	4 (0.090)	4/244	NT	6.8%	coding (29/771 nt)	hisF	imidazole glycerol phosphate synthase subunit HisF
	?	NC_002947	= 352318	59 (1.250)					coding (56/771 nt)	hisF	imidazole glycerol phosphate synthase subunit HisF
*	?	NC_002947	353371 =	59 (1.200)	3 (0.060)	3/240	NT	5.5%	coding (959/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353410 =	47 (1.020)					coding (920/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein
*	?	NC_002947	= 422593	45 (0.910)	3 (0.060)	3/240	NT	6.2%	coding (1355/2787 nt)	PP_0348	hypothetical protein
	?	NC_002947	= 422635	49 (1.060)					coding (1313/2787 nt)	PP_0348	hypothetical protein
*	?	NC_002947	= 440717	46 (0.930)	4 (0.090)	4/244	NT	8.3%	coding (658/1059 nt)	bioB	biotin synthase
	?	NC_002947	= 440759	45 (0.960)					coding (700/1059 nt)	bioB	biotin synthase
*	?	NC_002947	= 494433	55 (1.110)	3 (0.060)	3/242	NT	6.0%	coding (194/768 nt)	djlA	DnaJ‑like protein DjlA
	?	NC_002947	= 494462	42 (0.900)					coding (223/768 nt)	djlA	DnaJ‑like protein DjlA
*	?	NC_002947	504628 =	51 (1.030)	3 (0.070)	3/236	NT	6.2%	coding (10/819 nt)	PP_0416	phosphoglycolate phosphatase
	?	NC_002947	504742 =	43 (0.940)					coding (124/819 nt)	PP_0416	phosphoglycolate phosphatase
*	?	NC_002947	522020 =	46 (0.930)	5 (0.110)	4/244	NT	8.7%	coding (707/1428 nt)	PP_0435	M23/M37 family peptidase
	?	NC_002947	522075 =	61 (1.300)					coding (652/1428 nt)	PP_0435	M23/M37 family peptidase
*	?	NC_002947	539377 =	60 (1.220)	4 (0.080)	4/246	NT	6.1%	coding (1755/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	539420 =	66 (1.390)					coding (1798/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
*	?	NC_002947	611927 =	NA (NA)	4 (0.090)	4/238	NT	NA	coding (824/966 nt)	PP_0526	transposase
	?	NC_002947	611970 =	NA (NA)					coding (867/966 nt)	PP_0526	transposase
*	?	NC_002947	= 615213	46 (0.930)	3 (0.060)	3/240	NT	6.2%	coding (34/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	= 615257	48 (1.040)					coding (229/243 nt)	xseB	exodeoxyribonuclease 7 small subunit
*	?	NC_002947	624509 =	45 (0.910)	3 (0.060)	3/240	NT	5.7%	coding (398/702 nt)	PP_0537	transcriptional regulator
	?	NC_002947	624553 =	58 (1.250)					coding (354/702 nt)	PP_0537	transcriptional regulator
*	?	NC_002947	632192 =	49 (0.990)	3 (0.060)	3/246	NT	6.1%	coding (1249/1521 nt)	aldB‑I	aldehyde dehydrogenase
	?	NC_002947	632233 =	45 (0.950)					coding (1208/1521 nt)	aldB‑I	aldehyde dehydrogenase
*	?	NC_002947	= 636964	63 (1.280)	4 (0.080)	4/248	NT	6.1%	coding (1188/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
	?	NC_002947	= 636999	63 (1.320)					coding (1223/1350 nt)	mpl	UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase
*	?	NC_002947	642448 =	62 (1.260)	4 (0.090)	4/244	NT	6.2%	coding (539/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
	?	NC_002947	642503 =	62 (1.320)					coding (484/1107 nt)	acoC	acetoin cleaving system dihydrolipoyllysine‑residue acetyltransferase
*	?	NC_002947	= 652782	53 (1.070)	16 (0.380)	12/216	NT	41.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	= 654740	49 (0.990)	4 (0.090)	4/234	NT	8.1%	coding (3/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 654774	46 (1.020)					intergenic (‑32/+213)	ctpL/PP_0563	methyl‑accepting chemotaxis protein CtpL/two‑component system response regulator
*	?	NC_002947	663596 =	58 (1.170)	4 (0.080)	4/246	NT	6.8%	coding (462/4902 nt)	yfhM	lipoprotein
	?	NC_002947	663635 =	54 (1.140)					coding (501/4902 nt)	yfhM	lipoprotein
*	?	NC_002947	670029 =	33 (0.670)	4 (0.090)	3/244	NT	10.2%	coding (1471/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	670078 =	39 (0.830)					coding (1520/2355 nt)	pbpC	peptidoglycan glycosyltransferase
*	?	NC_002947	670925 =	57 (1.150)	4 (0.090)	4/242	NT	7.3%	intergenic (+12/‑21)	pbpC/PP_0573	peptidoglycan glycosyltransferase/hypothetical protein
	?	NC_002947	670972 =	47 (1.010)					coding (27/1725 nt)	PP_0573	hypothetical protein
*	?	NC_002947	673769 =	57 (1.150)	4 (0.080)	4/248	NT	7.4%	coding (340/471 nt)	PP_0575	membrane protein
	?	NC_002947	673812 =	45 (0.940)					coding (297/471 nt)	PP_0575	membrane protein
*	?	NC_002947	= 691803	58 (1.170)	3 (0.060)	3/244	NT	5.2%	coding (559/585 nt)	yigZ	ribosome‑binding factor
	?	NC_002947	= 691844	54 (1.150)					coding (518/585 nt)	yigZ	ribosome‑binding factor
*	?	NC_002947	= 714904	52 (1.050)	3 (0.060)	3/246	NT	5.7%	coding (918/948 nt)	ispH	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase
	?	NC_002947	= 714935	49 (1.030)					intergenic (+1/+76)	ispH/PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
*	?	NC_002947	741470 =	NA (NA)	7 (0.150)	7/248	NT	10.9%	intergenic (+70/‑430)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	2069163 =	59 (1.200)					intergenic (+10/‑464)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase
*	?	NC_002947	= 741643	NA (NA)	3 (0.060)	3/248	NT	NA	intergenic (+243/‑257)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741675	NA (NA)					intergenic (+275/‑225)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
*	?	NC_002947	742915 =	NA (NA)	6 (0.130)	5/244	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742945 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	760762 =	54 (1.090)	3 (0.060)	3/240	NT	5.8%	coding (778/1386 nt)	PP_0652	gluconate transporter
	?	NC_002947	760812 =	46 (0.990)					coding (728/1386 nt)	PP_0652	gluconate transporter
*	?	NC_002947	767988 =	56 (1.130)	4 (0.080)	4/246	NT	7.2%	coding (66/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	768018 =	49 (1.030)					coding (96/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
*	?	NC_002947	= 820231	52 (1.050)	4 (0.090)	4/242	NT	6.8%	coding (711/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
	?	NC_002947	= 820249	61 (1.310)					coding (729/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
*	?	NC_002947	822269 =	59 (1.200)	3 (0.060)	3/244	NT	5.8%	coding (1640/2412 nt)	PP_0707	hypothetical protein
	?	NC_002947	822299 =	42 (0.890)					coding (1670/2412 nt)	PP_0707	hypothetical protein
*	?	NC_002947	= 853445	47 (0.950)	3 (0.060)	3/244	NT	6.5%	coding (950/1083 nt)	prfA	peptide chain release factor 1
	?	NC_002947	= 853474	42 (0.890)					coding (979/1083 nt)	prfA	peptide chain release factor 1
*	?	NC_002947	= 885714	64 (1.300)	5 (0.110)	5/244	NT	7.4%	coding (1625/2718 nt)	PP_0767	LuxR family transcriptional regulator
	?	NC_002947	= 885737	64 (1.360)					coding (1648/2718 nt)	PP_0767	LuxR family transcriptional regulator
*	?	NC_002947	= 888950	60 (1.220)	4 (0.090)	4/244	NT	6.4%	coding (380/693 nt)	PP_0769	sensor histidine kinase
	?	NC_002947	= 888978	59 (1.250)					coding (408/693 nt)	PP_0769	sensor histidine kinase
*	?	NC_002947	= 893784	53 (1.070)	4 (0.090)	4/242	NT	7.9%	coding (265/303 nt)	PP_0775	hypothetical protein
	?	NC_002947	= 893815	43 (0.920)					coding (234/303 nt)	PP_0775	hypothetical protein
*	?	NC_002947	936444 =	45 (0.910)	3 (0.060)	3/246	NT	6.5%	coding (9178/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	936481 =	43 (0.910)					coding (9141/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	958380 =	37 (0.750)	4 (0.090)	4/230	NT	11.4%	intergenic (+27/‑166)	ykgJ/PP_0820	ferredoxin/acetyltransferase
	?	NC_002947	958419 =	29 (0.650)					intergenic (+66/‑127)	ykgJ/PP_0820	ferredoxin/acetyltransferase
*	?	NC_002947	= 971933	54 (1.090)	4 (0.090)	4/244	NT	7.1%	coding (225/1863 nt)	secD	protein translocase subunit SecD
	?	NC_002947	= 971965	53 (1.130)					coding (257/1863 nt)	secD	protein translocase subunit SecD
*	?	NC_002947	975171 =	43 (0.870)	3 (0.070)	3/216	NT	9.6%	intergenic (+20/+149)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
	?	NC_002947	975243 =	20 (0.480)					intergenic (+92/+77)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
*	?	NC_002947	990894 =	50 (1.010)	4 (0.090)	4/244	NT	8.5%	coding (775/1143 nt)	PP_0856	lipoprotein
	?	NC_002947	990935 =	38 (0.810)					coding (816/1143 nt)	PP_0856	lipoprotein
*	?	NC_002947	991669 =	42 (0.850)	4 (0.080)	4/248	NT	9.0%	coding (291/1464 nt)	der	GTPase Der
	?	NC_002947	991730 =	40 (0.840)					coding (352/1464 nt)	der	GTPase Der
*	?	NC_002947	= 991688	39 (0.790)	3 (0.060)	3/240	NT	7.2%	coding (310/1464 nt)	der	GTPase Der
	?	NC_002947	= 991712	41 (0.890)					coding (334/1464 nt)	der	GTPase Der
*	?	NC_002947	= 995883	66 (1.340)	4 (0.090)	4/244	NT	5.5%	coding (1713/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
	?	NC_002947	= 995914	75 (1.590)					coding (1682/2550 nt)	PP_0860	sulfite reductase flavoprotein subunit
*	?	NC_002947	1011706 =	51 (1.030)	3 (0.060)	3/248	NT	6.2%	coding (118/1584 nt)	prfC	peptide chain release factor 3
	?	NC_002947	1011757 =	42 (0.880)					coding (169/1584 nt)	prfC	peptide chain release factor 3
*	?	NC_002947	= 1063467	60 (1.220)	3 (0.060)	3/244	NT	5.3%	coding (422/1050 nt)	xenB	xenobiotic reductase B
	?	NC_002947	= 1063490	51 (1.080)					coding (399/1050 nt)	xenB	xenobiotic reductase B
*	?	NC_002947	1067194 =	54 (1.090)	3 (0.060)	3/248	NT	5.4%	coding (435/888 nt)	PP_0925	hypothetical protein
	?	NC_002947	1067235 =	52 (1.090)					coding (476/888 nt)	PP_0925	hypothetical protein
*	?	NC_002947	= 1069924	36 (0.730)	3 (0.060)	3/240	NT	7.3%	coding (1086/1362 nt)	aroP‑I	aromatic amino acid transport protein
	?	NC_002947	= 1069962	42 (0.910)					coding (1124/1362 nt)	aroP‑I	aromatic amino acid transport protein
*	?	NC_002947	1136258 =	61 (1.240)	4 (0.090)	3/242	NT	6.6%	coding (717/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
	?	NC_002947	1136328 =	55 (1.180)					coding (647/1509 nt)	PP_0997	sigma‑54 dependent transcriptional regulator/sensory box protein
*	?	NC_002947	1165638 =	53 (1.070)	4 (0.080)	4/246	NT	6.5%	coding (23/1470 nt)	zwfA	glucose 6‑phosphate‑1‑dehydrogenase
	?	NC_002947	1165688 =	65 (1.370)					coding (73/1470 nt)	zwfA	glucose 6‑phosphate‑1‑dehydrogenase
*	?	NC_002947	1188256 =	74 (1.500)	5 (0.100)	5/252	NT	6.3%	coding (3461/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
	?	NC_002947	1188298 =	77 (1.580)					coding (3503/3900 nt)	purL	phosphoribosylformylglycinamidine synthase
*	?	NC_002947	= 1195712	47 (0.950)	3 (0.060)	3/250	NT	5.6%	coding (202/426 nt)	xcpP	type II secretion pathway protein XcpP
	?	NC_002947	= 1195767	55 (1.140)					coding (257/426 nt)	xcpP	type II secretion pathway protein XcpP
*	?	NC_002947	= 1218645	57 (1.150)	7 (0.150)	7/244	NT	10.4%	coding (182/1137 nt)	PP_1064	alpha/beta family hydrolase
	?	NC_002947	= 1218666	66 (1.400)					coding (203/1137 nt)	PP_1064	alpha/beta family hydrolase
*	?	NC_002947	= 1371742	49 (0.990)	3 (0.070)	3/234	NT	6.6%	intergenic (+15/+57)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
	?	NC_002947	= 1371771	40 (0.890)					intergenic (+44/+28)	PP_1196/rimO	hypothetical protein/ribosomal protein S12 methylthiotransferase
*	?	NC_002947	1380487 =	45 (0.910)	6 (0.130) +CTGAC	5/246	NT	11.6%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380742 =	50 (1.010)					intergenic (‑130/+5)	PP_t67/PP_t66	tRNA‑Met/tRNA‑Met
*	?	NC_002947	1388256 =	47 (0.950)	3 (0.070)	3/238	NT	6.8%	coding (234/594 nt)	PP_1209	cold‑shock protein
	?	NC_002947	1388304 =	38 (0.830)					coding (186/594 nt)	PP_1209	cold‑shock protein
*	?	NC_002947	= 1419549	27 (0.550)	17 (0.350)	15/250	NT	39.8%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	25 (0.520)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1420319	52 (1.050)	4 (0.090)	4/242	NT	7.5%	intergenic (‑279/‑202)	PP_mr17/PP_1245	C4 ncRNA/hypothetical protein
	?	NC_002947	= 1420345	50 (1.070)					intergenic (‑305/‑176)	PP_mr17/PP_1245	C4 ncRNA/hypothetical protein
*	?	NC_002947	1446314 =	39 (0.790)	8 (0.170)	6/246	NT	16.6%	coding (412/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1446376 =	43 (0.910)					coding (474/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1452064 =	29 (0.590)	3 (0.060)	3/240	NT	10.3%	coding (226/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter
	?	NC_002947	1452131 =	25 (0.540)					coding (293/1542 nt)	PP_1271	putative Multidrug efflux MFS transporter
*	?	NC_002947	1487006 =	37 (0.750)	10 (0.260)	9/196	NT	29.3%	intergenic (+22/+108)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
	?	NC_002947	1487096 =	20 (0.530)					intergenic (+112/+18)	yhdZ/degS	amino acid ABC transporter ATP‑binding protein/serine endoprotease DegS
*	?	NC_002947	= 1499458	38 (0.770)	11 (0.230)	7/252	NT	24.3%	intergenic (+35/‑129)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 1499495	31 (0.640)					intergenic (+72/‑92)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	= 1531447	51 (1.030)	3 (0.060)	3/248	NT	6.6%	coding (429/630 nt)	PP_1344	hypothetical protein
	?	NC_002947	= 1531499	36 (0.750)					coding (377/630 nt)	PP_1344	hypothetical protein
*	?	NC_002947	1569744 =	41 (0.830)	8 (0.180)	7/236	NT	17.4%	coding (555/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
	?	NC_002947	1569779 =	38 (0.840)					coding (590/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
*	?	NC_002947	1596059 =	43 (0.870)	6 (0.130)	6/246	NT	14.2%	coding (952/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	1596148 =	31 (0.650)					coding (863/1335 nt)	dctD‑III	C4‑dicarboxylate transport transcriptional regulator
*	?	NC_002947	1636985 =	51 (1.030)	4 (0.080)	4/248	NT	8.2%	coding (435/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
	?	NC_002947	1637013 =	40 (0.840)					coding (463/741 nt)	pdxJ	pyridoxine 5'‑phosphate synthase
*	?	NC_002947	1638285 =	43 (0.870)	3 (0.060)	3/242	NT	7.3%	coding (455/1383 nt)	PP_1437	heavy metal sensor histidine kinase
	?	NC_002947	1638341 =	36 (0.770)					coding (399/1383 nt)	PP_1437	heavy metal sensor histidine kinase
*	?	NC_002947	= 1670783	47 (0.950)	3 (0.060)	3/242	NT	5.2%	coding (112/408 nt)	PP_1466	acyl‑CoA thioesterase
	?	NC_002947	= 1670833	64 (1.370)					coding (162/408 nt)	PP_1466	acyl‑CoA thioesterase
*	?	NC_002947	1675701 =	48 (0.970)	3 (0.060)	3/242	NT	6.6%	coding (868/1305 nt)	hom	homoserine dehydrogenase
	?	NC_002947	1675742 =	39 (0.840)					coding (909/1305 nt)	hom	homoserine dehydrogenase
*	?	NC_002947	1681194 =	69 (1.400)	4 (0.080)	4/246	NT	5.8%	coding (264/543 nt)	PP_1476	hypothetical protein
	?	NC_002947	1681256 =	63 (1.330)					coding (326/543 nt)	PP_1476	hypothetical protein
*	?	NC_002947	1697824 =	49 (0.990)	4 (0.090)	3/242	NT	7.7%	coding (1857/2289 nt)	PP_1492	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1697871 =	49 (1.050)					coding (1904/2289 nt)	PP_1492	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	1704143 =	58 (1.170)	4 (0.080)	4/246	NT	6.4%	coding (79/549 nt)	PP_1498	lipoprotein
	?	NC_002947	1704184 =	61 (1.290)					coding (120/549 nt)	PP_1498	lipoprotein
*	?	NC_002947	1710452 =	40 (0.810)	3 (0.060)	3/246	NT	6.9%	coding (1071/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	1710524 =	42 (0.890)					coding (1143/2628 nt)	ppc	phosphoenolpyruvate carboxylase
*	?	NC_002947	1723318 =	30 (0.610)	4 (0.080)	3/248	NT	11.8%	coding (1951/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	1723400 =	31 (0.650)					coding (2033/3066 nt)	PP_1517	RND family transporter
*	?	NC_002947	= 1733577	37 (0.750)	4 (0.090)	4/240	NT	10.7%	coding (293/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1733600	32 (0.690)					coding (270/2592 nt)	PP_1526	beta‑(1‑3)‑glucosyl transferase
*	?	NC_002947	1736968 =	50 (1.010)	3 (0.060)	3/242	NT	6.2%	coding (672/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
	?	NC_002947	1737010 =	43 (0.920)					coding (630/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
*	?	NC_002947	= 1750462	55 (1.110)	4 (0.080)	4/246	NT	6.7%	coding (139/177 nt)	PP_1550	Cro/CI family transcriptional regulator
	?	NC_002947	= 1750500	59 (1.240)					coding (177/177 nt)	PP_1550	Cro/CI family transcriptional regulator
*	?	NC_002947	1790414 =	52 (1.050)	3 (0.060)	3/244	NT	5.9%	coding (344/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
	?	NC_002947	1790444 =	47 (1.000)					coding (374/1215 nt)	dxr	1‑deoxy‑D‑xylulose‑5‑phosphate reductoisomerase
*	?	NC_002947	= 1855558	37 (0.750)	4 (0.090)	4/240	NT	9.8%	coding (570/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855620	39 (0.840)					coding (632/1341 nt)	PP_1659	hypothetical protein
*	?	NC_002947	= 1868503	50 (1.010)	4 (0.090)	4/242	NT	7.3%	coding (617/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
	?	NC_002947	= 1868531	55 (1.180)					coding (645/1296 nt)	cobB	cobyrinate a,c‑diamide synthase
*	?	NC_002947	1886308 =	46 (0.930)	3 (0.060)	3/244	NT	7.2%	coding (975/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	1886347 =	34 (0.720)					coding (1014/1488 nt)	rmuC	DNA recombination limiting inversions protein
*	?	NC_002947	= 1928727	40 (0.810)	4 (0.090)	4/242	NT	9.7%	coding (1365/2154 nt)	PP_1728	membrane protein
	?	NC_002947	= 1928783	37 (0.790)					coding (1309/2154 nt)	PP_1728	membrane protein
*	?	NC_002947	1935398 =	57 (1.150)	4 (0.080)	4/246	NT	8.2%	coding (663/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	1935456 =	35 (0.740)					coding (721/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
*	?	NC_002947	= 1936644	55 (1.110)	4 (0.090)	3/242	NT	8.2%	coding (946/1149 nt)	PP_1736	hypothetical protein
	?	NC_002947	= 1936722	37 (0.790)					coding (1024/1149 nt)	PP_1736	hypothetical protein
*	?	NC_002947	= 1950623	39 (0.790)	4 (0.090)	4/240	NT	9.8%	coding (823/1788 nt)	asnB	asparagine synthetase
	?	NC_002947	= 1950686	37 (0.800)					coding (760/1788 nt)	asnB	asparagine synthetase
*	?	NC_002947	= 1957618	49 (0.990)	5 (0.110)	5/236	NT	10.3%	intergenic (+46/+51)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase
	?	NC_002947	= 1957649	42 (0.920)					intergenic (+77/+20)	PP_1754/fumC‑II	hypothetical protein/class 2 fumarate hydratase
*	?	NC_002947	= 2085883	9 (0.180)	8 (0.170)	6/250	NT	47.7%	intergenic (+592/‑3)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 2413187	NA (NA)					coding (31/1302 nt)	PP_2114	transposase
*	?	NC_002947	2086243 =	NA (NA)	3 (0.060)	3/240	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	5 (0.110)	3/240	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2120463 =	41 (0.830)	3 (0.060)	3/240	NT	6.4%	coding (1614/2355 nt)	PP_1885	hypothetical protein
	?	NC_002947	2120512 =	49 (1.060)					coding (1663/2355 nt)	PP_1885	hypothetical protein
*	?	NC_002947	2228920 =	39 (0.790)	3 (0.060)	3/248	NT	7.1%	coding (56/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2228956 =	41 (0.860)					coding (92/783 nt)	ycfH	tRNA D‑aminoacylase
*	?	NC_002947	= 2254855	51 (1.030)	3 (0.060)	3/250	NT	5.2%	coding (28/1113 nt)	asd	aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2254919	60 (1.240)					coding (92/1113 nt)	asd	aspartate‑semialdehyde dehydrogenase
*	?	NC_002947	= 2268094	40 (0.810)	3 (0.060)	3/250	NT	7.4%	coding (419/1506 nt)	purF	amidophosphoribosyl transferase
	?	NC_002947	= 2268156	36 (0.750)					coding (481/1506 nt)	purF	amidophosphoribosyl transferase
*	?	NC_002947	2275170 =	67 (1.360)	5 (0.110)	5/240	NT	8.5%	coding (320/1119 nt)	PP_2005	hypothetical protein
	?	NC_002947	2275244 =	45 (0.970)					coding (246/1119 nt)	PP_2005	hypothetical protein
*	?	NC_002947	2301453 =	0 (0.000)	47 (0.970)	42/250	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	35 (0.720)	30/252	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 2348248	44 (0.890)	4 (0.090)	4/232	NT	8.3%	coding (455/3084 nt)	PP_2065	multidrug RND transporter
	?	NC_002947	= 2348288	49 (1.100)					coding (495/3084 nt)	PP_2065	multidrug RND transporter
*	?	NC_002947	= 2354551	55 (1.110)	6 (0.130)	4/240	NT	11.0%	intergenic (‑20/+38)	PP_2068/PP_2069	multidrug MFS transporter membrane fusion protein/multidrug MFS transporter outer membrane protein
	?	NC_002947	= 4856112	46 (0.990)					intergenic (+84/+112)	PP_4270/PP_5670	hypothetical protein/hypothetical protein
*	?	NC_002947	2357931 =	54 (1.090)	4 (0.090)	4/238	NT	7.8%	coding (380/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	2357977 =	45 (0.980)					coding (334/825 nt)	PP_2072	AraC family transcriptional regulator
*	?	NC_002947	2361924 =	41 (0.830)	5 (0.110)	5/238	NT	13.3%	coding (1953/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	= 3838237	27 (0.590)					coding (1832/2673 nt)	PP_3388	hypothetical protein
*	?	NC_002947	= 2362107	61 (1.240)	4 (0.090)	4/242	NT	6.1%	coding (1770/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	= 2362130	65 (1.390)					coding (1747/2724 nt)	PP_2076	hypothetical protein
*	?	NC_002947	2407945 =	43 (0.870)	6 (0.130)	4/248	NT	11.9%	coding (620/1566 nt)	PP_2111	aerotaxis receptor
	?	NC_002947	2408003 =	47 (0.980)					coding (562/1566 nt)	PP_2111	aerotaxis receptor
*	?	NC_002947	= 2491759	42 (0.850)	3 (0.060)	3/242	NT	6.5%	coding (1182/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
	?	NC_002947	= 2491788	47 (1.010)					coding (1211/2883 nt)	PP_2185	formate dehydrogenase subunit alpha
*	?	NC_002947	2547980 =	35 (0.710)	4 (0.090)	4/242	NT	10.7%	coding (222/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	2548026 =	34 (0.730)					coding (176/888 nt)	rhtA	threonine/homoserine exporter
*	?	NC_002947	= 2558200	41 (0.830)	4 (0.080)	4/246	NT	9.2%	coding (460/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
	?	NC_002947	= 2558235	40 (0.840)					coding (495/2235 nt)	fepA	ferric enterobactin transport system outer membrane subunit
*	?	NC_002947	= 2562510	40 (0.810)	3 (0.070)	3/238	NT	7.5%	coding (248/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	= 2562545	37 (0.810)					coding (283/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
*	?	NC_002947	2568772 =	47 (0.950)	3 (0.060)	3/244	NT	6.0%	coding (776/1050 nt)	PP_2252	hypothetical protein
	?	NC_002947	2568831 =	50 (1.060)					coding (717/1050 nt)	PP_2252	hypothetical protein
*	?	NC_002947	= 2593638	30 (0.610)	3 (0.060)	3/240	NT	9.7%	coding (136/411 nt)	PP_5509	hypothetical protein
	?	NC_002947	= 2593675	28 (0.610)					coding (173/411 nt)	PP_5509	hypothetical protein
*	?	NC_002947	= 2597695	57 (1.150)	4 (0.090)	4/242	NT	7.6%	coding (70/753 nt)	PP_2276	exonuclease
	?	NC_002947	= 2597753	44 (0.940)					coding (128/753 nt)	PP_2276	exonuclease
*	?	NC_002947	= 2646418	48 (0.970)	4 (0.090)	4/236	NT	8.6%	coding (896/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 2646516	41 (0.900)					coding (798/2499 nt)	PP_2316	ABC transporter permease
*	?	NC_002947	= 2692260	40 (0.810)	4 (0.090)	4/244	NT	8.2%	coding (421/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2692328	51 (1.080)					coding (489/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
*	?	NC_002947	2704862 =	37 (0.750)	4 (0.080)	4/246	NT	11.3%	coding (2019/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	2704882 =	27 (0.570)					coding (2039/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2705526	42 (0.850)	4 (0.090)	3/244	NT	10.5%	coding (2683/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2705600	28 (0.600)					coding (2757/4188 nt)	PP_2369	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2730749	38 (0.770)	5 (0.110)	5/240	NT	12.4%	coding (86/2361 nt)	polB	DNA polymerase II
	?	NC_002947	= 2730786	35 (0.760)					coding (123/2361 nt)	polB	DNA polymerase II
*	?	NC_002947	2757933 =	36 (0.730)	3 (0.060)	3/244	NT	7.1%	coding (259/1338 nt)	PP_2411	MFS transporter
	?	NC_002947	2757998 =	44 (0.940)					coding (194/1338 nt)	PP_2411	MFS transporter
*	?	NC_002947	2957072 =	39 (0.790)	5 (0.110)	5/226	NT	12.8%	intergenic (+27/‑169)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2957159 =	34 (0.780)					intergenic (+114/‑82)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
*	?	NC_002947	2964684 =	48 (0.970)	3 (0.060)	3/244	NT	6.4%	coding (186/942 nt)	fatD	ferric anguibactin transport system permease FatD
	?	NC_002947	2964750 =	42 (0.890)					coding (120/942 nt)	fatD	ferric anguibactin transport system permease FatD
*	?	NC_002947	2970432 =	45 (0.910)	4 (0.090)	4/242	NT	9.1%	coding (771/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
	?	NC_002947	2970464 =	37 (0.790)					coding (803/2391 nt)	PP_2599	chemotaxis sensory transducer family protein
*	?	NC_002947	= 2982538	42 (0.850)	3 (0.060)	3/250	NT	6.5%	coding (641/810 nt)	PP_2608	shikimate dehydrogenase family protein
	?	NC_002947	= 2982579	45 (0.930)					coding (600/810 nt)	PP_2608	shikimate dehydrogenase family protein
*	?	NC_002947	2988836 =	43 (0.870)	3 (0.060)	3/248	NT	7.2%	coding (506/951 nt)	PP_2613	hypothetical protein
	?	NC_002947	2988881 =	36 (0.750)					coding (461/951 nt)	PP_2613	hypothetical protein
*	?	NC_002947	= 3027808	58 (1.170)	4 (0.090)	4/242	NT	6.5%	coding (1173/1491 nt)	PP_2642	GntR family transcriptional regulator
	?	NC_002947	= 3027822	60 (1.290)					coding (1187/1491 nt)	PP_2642	GntR family transcriptional regulator
*	?	NC_002947	3039828 =	40 (0.810)	3 (0.060)	3/244	NT	8.4%	coding (913/1344 nt)	PP_2651	MFS transporter
	?	NC_002947	3039879 =	27 (0.570)					coding (964/1344 nt)	PP_2651	MFS transporter
*	?	NC_002947	= 3041581	35 (0.710)	4 (0.090)	4/242	NT	11.3%	coding (411/819 nt)	PP_2653	Cro/CI family transcriptional regulator
	?	NC_002947	= 3041607	30 (0.640)					coding (385/819 nt)	PP_2653	Cro/CI family transcriptional regulator
*	?	NC_002947	3082878 =	37 (0.750)	4 (0.090)	3/240	NT	10.7%	coding (1190/1551 nt)	PP_2692	BCCT family transporter
	?	NC_002947	3082933 =	32 (0.690)					coding (1135/1551 nt)	PP_2692	BCCT family transporter
*	?	NC_002947	3102027 =	32 (0.650)	3 (0.060)	3/246	NT	9.6%	coding (661/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	3102071 =	26 (0.550)					coding (705/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3102530	40 (0.810)	4 (0.090)	4/238	NT	9.4%	coding (361/642 nt)	PP_2712	hypothetical protein
	?	NC_002947	= 3102550	40 (0.870)					coding (381/642 nt)	PP_2712	hypothetical protein
*	?	NC_002947	= 3126029	49 (0.990)	4 (0.080)	4/246	NT	8.6%	coding (241/594 nt)	PP_2743	GNAT family acetyltransferase
	?	NC_002947	= 3126058	38 (0.800)					coding (212/594 nt)	PP_2743	GNAT family acetyltransferase
*	?	NC_002947	3138572 =	37 (0.750)	4 (0.080)	4/250	NT	9.4%	coding (711/1350 nt)	PP_2754	OprD family outer membrane porin
	?	NC_002947	3138643 =	41 (0.850)					coding (782/1350 nt)	PP_2754	OprD family outer membrane porin
*	?	NC_002947	3143125 =	52 (1.050)	4 (0.090)	3/240	NT	7.7%	coding (49/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
	?	NC_002947	3143163 =	47 (1.020)					coding (87/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
*	?	NC_002947	= 3168951	38 (0.770)	3 (0.060)	3/242	NT	7.9%	coding (846/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
	?	NC_002947	= 3168978	34 (0.730)					coding (873/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
*	?	NC_002947	3174829 =	33 (0.670)	3 (0.070)	3/238	NT	7.9%	coding (130/2610 nt)	PP_2787	transporter
	?	NC_002947	3174928 =	39 (0.850)					coding (229/2610 nt)	PP_2787	transporter
*	?	NC_002947	3177318 =	43 (0.870)	3 (0.060)	3/244	NT	6.3%	intergenic (+9/+61)	PP_2787/PP_2788	transporter/MerR family transcriptional regulator
	?	NC_002947	3177351 =	48 (1.020)					intergenic (+42/+28)	PP_2787/PP_2788	transporter/MerR family transcriptional regulator
*	?	NC_002947	3198090 =	35 (0.710)	3 (0.060)	3/248	NT	7.9%	coding (567/1527 nt)	ethA	FAD‑containing monooxygenase EthA
	?	NC_002947	3198123 =	36 (0.750)					coding (534/1527 nt)	ethA	FAD‑containing monooxygenase EthA
*	?	NC_002947	3213874 =	38 (0.770)	3 (0.060)	3/246	NT	7.7%	coding (941/1137 nt)	mexC	multidrug RND transporter membrane fusion protein MexC
	?	NC_002947	3213958 =	35 (0.740)					coding (1025/1137 nt)	mexC	multidrug RND transporter membrane fusion protein MexC
*	?	NC_002947	3214581 =	68 (1.380)	4 (0.090)	3/242	NT	5.9%	coding (496/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214620 =	63 (1.350)					coding (535/3129 nt)	mexD	multidrug RND transporter MexD
*	?	NC_002947	= 3241224	40 (0.810)	4 (0.090)	4/242	NT	9.1%	coding (920/1650 nt)	PP_2838	hypothetical protein
	?	NC_002947	= 3241320	42 (0.900)					coding (1016/1650 nt)	PP_2838	hypothetical protein
*	?	NC_002947	3282789 =	47 (0.950)	5 (0.110)	5/240	NT	10.0%	coding (125/546 nt)	PP_2884	XRE family transcriptional regulator
	?	NC_002947	3282839 =	46 (0.990)					coding (75/546 nt)	PP_2884	XRE family transcriptional regulator
*	?	NC_002947	= 3289797	39 (0.790)	4 (0.090)	4/242	NT	9.3%	coding (829/1752 nt)	PP_2892	hypothetical protein
	?	NC_002947	= 3289831	41 (0.880)					coding (863/1752 nt)	PP_2892	hypothetical protein
*	?	NC_002947	3364666 =	56 (1.130)	5 (0.110)	4/246	NT	8.9%	coding (560/879 nt)	PP_2961	LysR family transcriptional regulator
	?	NC_002947	3364702 =	49 (1.030)					coding (524/879 nt)	PP_2961	LysR family transcriptional regulator
*	?	NC_002947	3402153 =	33 (0.670)	3 (0.060)	3/242	NT	8.3%	coding (46/369 nt)	PP_3010	hypothetical protein
	?	NC_002947	3402180 =	35 (0.750)					coding (73/369 nt)	PP_3010	hypothetical protein
*	?	NC_002947	= 3406762	17 (0.340)	3 (0.060)	3/242	NT	10.9%	coding (280/744 nt)	PP_3019	carbon‑nitrogen hydrolase family protein
	?	NC_002947	= 3406814	33 (0.710)					coding (228/744 nt)	PP_3019	carbon‑nitrogen hydrolase family protein
*	?	NC_002947	3428206 =	48 (0.970)	3 (0.060)	3/248	NT	6.2%	coding (117/207 nt)	PP_3043	hypothetical protein
	?	NC_002947	3428250 =	45 (0.940)					coding (161/207 nt)	PP_3043	hypothetical protein
*	?	NC_002947	3452575 =	54 (1.090)	3 (0.070)	3/236	NT	6.3%	coding (872/2478 nt)	PP_3069	outer membrane autotransporter
	?	NC_002947	3452645 =	39 (0.860)					coding (802/2478 nt)	PP_3069	outer membrane autotransporter
*	?	NC_002947	= 3455551	38 (0.770)	3 (0.060)	3/244	NT	8.5%	coding (340/1953 nt)	aacs	acetoacetyl‑CoA synthetase
	?	NC_002947	= 3455614	28 (0.600)					coding (277/1953 nt)	aacs	acetoacetyl‑CoA synthetase
*	?	NC_002947	= 3466086	55 (1.110)	6 (0.120)	6/256	NT	9.5%	noncoding (74/119 nt)	PP_mr39	P15 ncRNA
	?	NC_002947	= 3466114	59 (1.200)					noncoding (46/119 nt)	PP_mr39	P15 ncRNA
*	?	NC_002947	= 3476250	41 (0.830)	3 (0.060)	3/246	NT	6.4%	coding (463/2517 nt)	PP_3087	excinuclease ABC subunit A
	?	NC_002947	= 3476286	49 (1.030)					coding (427/2517 nt)	PP_3087	excinuclease ABC subunit A
*	?	NC_002947	= 3493750	45 (0.910)	3 (0.060)	3/246	NT	6.1%	coding (453/1821 nt)	PP_3097	hypothetical protein
	?	NC_002947	= 3493773	49 (1.030)					coding (430/1821 nt)	PP_3097	hypothetical protein
*	?	NC_002947	= 3552652	32 (0.650)	3 (0.070)	3/238	NT	8.9%	coding (309/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	= 3552675	32 (0.700)					coding (332/978 nt)	PP_3137	group 2 family glycosyl transferase
*	?	NC_002947	3577425 =	26 (0.530)	3 (0.070)	3/228	NT	10.9%	intergenic (+19/‑161)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
	?	NC_002947	3577480 =	26 (0.590)					intergenic (+74/‑106)	PP_3157/PP_3158	inositol monophosphatase family protein/hypothetical protein
*	?	NC_002947	3608915 =	42 (0.850)	4 (0.080)	4/248	NT	8.4%	coding (202/2265 nt)	PP_3182	GGDEF domain‑containing protein
	?	NC_002947	3608979 =	47 (0.980)					coding (138/2265 nt)	PP_3182	GGDEF domain‑containing protein
*	?	NC_002947	3629073 =	29 (0.590)	4 (0.080)	4/246	NT	12.0%	coding (863/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629119 =	31 (0.650)					coding (909/1125 nt)	PP_3199	monooxygenase
*	?	NC_002947	3652862 =	46 (0.930)	9 (0.190)	6/244	NT	16.7%	coding (748/1320 nt)	PP_3218	NtaA/SnaA/SoxA family monooxygenase
	?	NC_002947	3652899 =	46 (0.980)					coding (785/1320 nt)	PP_3218	NtaA/SnaA/SoxA family monooxygenase
*	?	NC_002947	3661203 =	42 (0.850)	5 (0.110)	5/242	NT	11.7%	coding (492/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	3661254 =	36 (0.770)					coding (441/945 nt)	PP_3225	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	= 3677964	47 (0.950)	3 (0.060)	3/250	NT	5.4%	coding (967/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	= 3678010	60 (1.240)					coding (1013/1569 nt)	PP_3242	GGDEF domain‑containing protein
*	?	NC_002947	3680591 =	55 (1.110)	3 (0.060)	3/250	NT	5.5%	coding (345/468 nt)	crtZ	beta‑carotene hydroxylase
	?	NC_002947	3680632 =	50 (1.040)					coding (386/468 nt)	crtZ	beta‑carotene hydroxylase
*	?	NC_002947	= 3687632	62 (1.260)	4 (0.080)	4/246	NT	6.8%	coding (706/951 nt)	PP_3252	HemK family modification methylase
	?	NC_002947	= 3687669	50 (1.050)					coding (743/951 nt)	PP_3252	HemK family modification methylase
*	?	NC_002947	3693203 =	34 (0.690)	3 (0.070)	3/236	NT	8.1%	coding (423/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	3693283 =	37 (0.810)					coding (343/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
*	?	NC_002947	3711885 =	32 (0.650)	4 (0.080)	4/248	NT	10.8%	coding (96/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
	?	NC_002947	3711921 =	35 (0.730)					coding (60/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
*	?	NC_002947	3752195 =	47 (0.950)	4 (0.090)	4/240	NT	8.5%	coding (1688/2823 nt)	PP_3316	chaperone‑associated ATPase
	?	NC_002947	3752250 =	42 (0.910)					coding (1633/2823 nt)	PP_3316	chaperone‑associated ATPase
*	?	NC_002947	3762377 =	59 (1.200)	5 (0.100)	3/250	NT	8.5%	coding (1725/2091 nt)	PP_3325	ferric siderophore receptor
	?	NC_002947	3762439 =	50 (1.040)					coding (1787/2091 nt)	PP_3325	ferric siderophore receptor
*	?	NC_002947	3862763 =	76 (1.540)	4 (0.080)	4/246	NT	5.8%	coding (1686/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3862825 =	58 (1.220)					coding (1748/3282 nt)	PP_3413	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3874929	38 (0.770)	4 (0.090)	3/240	NT	10.9%	intergenic (‑22/‑80)	ltg/xcpT	lytic transglycosylase/type II secretion pathway protein XcpT
	?	NC_002947	= 3874973	30 (0.650)					intergenic (‑66/‑36)	ltg/xcpT	lytic transglycosylase/type II secretion pathway protein XcpT
*	?	NC_002947	3915087 =	59 (1.200)	4 (0.090)	4/244	NT	6.7%	coding (56/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
	?	NC_002947	3915136 =	55 (1.170)					coding (105/1176 nt)	PP_3455	multidrug RND transporter membrane fusion protein
*	?	NC_002947	3947913 =	27 (0.550)	5 (0.130)	5/200	NT	18.2%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947998 =	24 (0.620)					coding (51/1797 nt)	PP_3483	type II secretion system protein
*	?	NC_002947	= 4038846	61 (1.240)	4 (0.090)	4/242	NT	6.3%	coding (645/849 nt)	PP_3559	glycine betaine ABC transporter permease
	?	NC_002947	= 4038866	62 (1.330)					coding (665/849 nt)	PP_3559	glycine betaine ABC transporter permease
*	?	NC_002947	= 4060960	36 (0.730)	4 (0.080)	4/246	NT	9.7%	intergenic (‑62/‑112)	pgm/PP_3579	phosphoglucomutase/membrane protein
	?	NC_002947	= 4061004	40 (0.840)					intergenic (‑106/‑68)	pgm/PP_3579	phosphoglucomutase/membrane protein
*	?	NC_002947	= 4083542	42 (0.850)	4 (0.080)	3/250	NT	10.0%	coding (541/753 nt)	PP_3593	amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 4083578	31 (0.640)					coding (577/753 nt)	PP_3593	amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	4117877 =	34 (0.690)	4 (0.090)	4/238	NT	12.2%	coding (567/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	4117923 =	26 (0.570)					coding (613/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
*	?	NC_002947	= 4125982	35 (0.710)	4 (0.090)	4/242	NT	9.4%	intergenic (‑151/+35)	PP_3629/opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D
	?	NC_002947	= 4126008	44 (0.940)					intergenic (‑177/+9)	PP_3629/opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D
*	?	NC_002947	4140139 =	58 (1.170)	5 (0.110)	3/240	NT	8.2%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140178 =	57 (1.230)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
*	?	NC_002947	= 4186187	34 (0.690)	3 (0.060)	3/242	NT	9.4%	intergenic (+103/‑467)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
	?	NC_002947	= 4186222	26 (0.560)					intergenic (+138/‑432)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
*	?	NC_002947	4191286 =	50 (1.010)	3 (0.060)	3/246	NT	6.1%	intergenic (‑618/‑539)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
	?	NC_002947	4191312 =	45 (0.950)					intergenic (‑644/‑513)	PP_5612/PP_5613	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4206546	67 (1.360)	4 (0.090)	4/238	NT	5.9%	coding (1230/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	= 4206598	65 (1.420)					coding (1178/6624 nt)	PP_3691	DNA helicase‑related protein
*	?	NC_002947	4215342 =	61 (1.240)	5 (0.100)	5/248	NT	7.6%	coding (1701/2085 nt)	PP_3697	hypothetical protein
	?	NC_002947	4215376 =	62 (1.300)					coding (1667/2085 nt)	PP_3697	hypothetical protein
*	?	NC_002947	4330858 =	42 (0.850)	5 (0.110)	5/242	NT	10.0%	coding (304/747 nt)	PP_3802	cation ABC transporter ATP‑binding protein
	?	NC_002947	4330923 =	50 (1.070)					coding (369/747 nt)	PP_3802	cation ABC transporter ATP‑binding protein
*	?	NC_002947	= 4337054	47 (0.950)	3 (0.060)	3/244	NT	6.3%	coding (161/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337105	44 (0.940)					coding (110/885 nt)	PP_3811	LysR family transcriptional regulator
*	?	NC_002947	4348666 =	44 (0.890)	8 (0.170)	6/244	NT	16.0%	intergenic (‑31/+443)	PP_3820/galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
	?	NC_002947	4393012 =	NA (NA)					coding (3/1422 nt)	PP_3868	group II intron‑encoding maturase
*	?	NC_002947	= 4352363	61 (1.240)	6 (0.130)	4/244	NT	9.2%	coding (21/303 nt)	PP_3825	hypothetical protein
	?	NC_002947	= 4352407	60 (1.280)					coding (65/303 nt)	PP_3825	hypothetical protein
*	?	NC_002947	= 4405582	40 (0.810)	4 (0.080)	4/246	NT	8.9%	coding (634/672 nt)	PP_3887	hypothetical protein
	?	NC_002947	= 4405615	43 (0.910)					coding (601/672 nt)	PP_3887	hypothetical protein
*	?	NC_002947	= 4408579	48 (0.970)	3 (0.060)	3/246	NT	5.6%	coding (150/297 nt)	ybcO	hypothetical protein
	?	NC_002947	= 4408605	55 (1.160)					coding (124/297 nt)	ybcO	hypothetical protein
*	?	NC_002947	= 4452248	41 (0.830)	3 (0.060)	3/248	NT	7.7%	coding (1852/3564 nt)	nicB	nicotinate dehydrogenase subunit B
	?	NC_002947	= 4452306	32 (0.670)					coding (1910/3564 nt)	nicB	nicotinate dehydrogenase subunit B
*	?	NC_002947	4491345 =	57 (1.150)	3 (0.060)	3/246	NT	5.2%	coding (519/2646 nt)	PP_3982	hypothetical protein
	?	NC_002947	4491381 =	55 (1.160)					coding (483/2646 nt)	PP_3982	hypothetical protein
*	?	NC_002947	4507290 =	50 (1.010)	4 (0.080)	3/246	NT	7.7%	intergenic (+8/+99)	gqr/cysG	glutathionyl‑hydroquinone reductase/multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
	?	NC_002947	4507382 =	48 (1.010)					intergenic (+100/+7)	gqr/cysG	glutathionyl‑hydroquinone reductase/multifunctional uroporphyrinogen‑III C‑methyltransferase/precorrin‑2 dehydrogenase/sirohydrochlorin ferrochelatase
*	?	NC_002947	4520290 =	36 (0.730)	4 (0.090)	4/244	NT	9.7%	coding (148/267 nt)	cspD	DNA replication inhibitor
	?	NC_002947	4520332 =	40 (0.850)					coding (190/267 nt)	cspD	DNA replication inhibitor
*	?	NC_002947	= 4535677	48 (0.970)	4 (0.090)	4/240	NT	7.7%	intergenic (+204/‑611)	PP_4022/PP_4024	hypothetical protein/transposase
	?	NC_002947	= 4535712	51 (1.100)					intergenic (+239/‑576)	PP_4022/PP_4024	hypothetical protein/transposase
*	?	NC_002947	= 4569586	49 (0.990)	3 (0.060)	3/244	NT	5.7%	coding (1516/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	NC_002947	= 4569622	52 (1.110)					coding (1552/2070 nt)	malQ	4‑alpha‑glucanotransferase
*	?	NC_002947	= 4601395	56 (1.130)	7 (0.150)	6/242	NT	10.9%	coding (497/633 nt)	PP_4073	hypothetical protein
	?	NC_002947	= 4601418	61 (1.310)					coding (474/633 nt)	PP_4073	hypothetical protein
*	?	NC_002947	4625235 =	57 (1.150)	6 (0.130)	3/242	NT	10.4%	intergenic (+3828/+736)	PP_5654/PP_4091	phosphotriesterase/transposase
	?	NC_002947	4625280 =	49 (1.050)					intergenic (+3873/+691)	PP_5654/PP_4091	phosphotriesterase/transposase
*	?	NC_002947	= 4648496	28 (0.570)	6 (0.130)	4/242	NT	16.8%	coding (643/1461 nt)	PP_4112	sulfate transporter
	?	NC_002947	= 4648526	33 (0.710)					coding (613/1461 nt)	PP_4112	sulfate transporter
*	?	NC_002947	= 4691165	59 (1.200)	4 (0.080)	4/246	NT	6.4%	coding (299/474 nt)	PP_4151	excisionase domain‑containing protein
	?	NC_002947	= 4691214	60 (1.260)					coding (348/474 nt)	PP_4151	excisionase domain‑containing protein
*	?	NC_002947	4716967 =	36 (0.730)	3 (0.060)	3/240	NT	7.7%	coding (59/516 nt)	fabA	3R‑3‑hydroxydecanoyl‑ACP dehydratase
	?	NC_002947	4717006 =	38 (0.820)					coding (98/516 nt)	fabA	3R‑3‑hydroxydecanoyl‑ACP dehydratase
*	?	NC_002947	4733550 =	66 (1.340)	5 (0.110)	5/242	NT	7.6%	coding (2085/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
	?	NC_002947	4733587 =	60 (1.290)					coding (2048/2832 nt)	sucA	2‑oxoglutarate dehydrogenase subunit E1
*	?	NC_002947	4765379 =	44 (0.890)	4 (0.090)	4/240	NT	8.0%	coding (32/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4765420 =	51 (1.100)					coding (73/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4780866 =	33 (0.670)	3 (0.070)	3/236	NT	8.8%	coding (6448/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4780910 =	32 (0.700)					coding (6404/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4782678 =	47 (0.950)	3 (0.060)	3/248	NT	6.3%	coding (4636/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4782724 =	43 (0.900)					coding (4590/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4808174 =	0 (0.000)	23 (0.640)	18/186	NT	59.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	32 (0.890)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	10 (0.220)	5/232	NT	27.4%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	53 (1.180)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4819242 =	49 (0.990)	3 (0.060)	3/244	NT	6.2%	coding (11948/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4819316 =	44 (0.940)					coding (11874/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	4822859 =	44 (0.890)	3 (0.070)	3/238	NT	6.8%	coding (8331/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4822919 =	41 (0.890)					coding (8271/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4856278	59 (1.200)	4 (0.090)	4/242	NT	6.5%	coding (222/276 nt)	PP_5670	hypothetical protein
	?	NC_002947	= 4856311	60 (1.290)					coding (189/276 nt)	PP_5670	hypothetical protein
*	?	NC_002947	= 4866957	59 (1.200)	4 (0.090)	4/244	NT	6.4%	coding (154/1455 nt)	xdhA	xanthine dehydrogenase subunit XdhA
	?	NC_002947	= 4866973	60 (1.280)					coding (170/1455 nt)	xdhA	xanthine dehydrogenase subunit XdhA
*	?	NC_002947	4875844 =	30 (0.610)	3 (0.060)	3/240	NT	7.9%	coding (1032/1350 nt)	PP_4284	transporter
	?	NC_002947	4875913 =	42 (0.910)					coding (1101/1350 nt)	PP_4284	transporter
*	?	NC_002947	4889569 =	48 (0.970)	5 (0.130)	5/202	NT	14.7%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889660 =	20 (0.510)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	4891009 =	54 (1.090)	3 (0.060)	3/242	NT	5.9%	coding (171/1275 nt)	ttuD	hydroxypyruvate reductase
	?	NC_002947	4891070 =	44 (0.940)					coding (232/1275 nt)	ttuD	hydroxypyruvate reductase
*	?	NC_002947	= 4896398	33 (0.670)	8 (0.190)	5/214	NT	19.6%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896445	38 (0.920)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4907717	46 (0.930)	3 (0.060)	3/246	NT	6.7%	coding (72/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
	?	NC_002947	= 4907760	39 (0.820)					coding (29/939 nt)	PP_4316	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
*	?	NC_002947	4950087 =	43 (0.870)	3 (0.060)	3/244	NT	7.2%	coding (257/969 nt)	fliM	flagellar biosynthesis switching/energizing protein
	?	NC_002947	4950133 =	36 (0.770)					coding (211/969 nt)	fliM	flagellar biosynthesis switching/energizing protein
*	?	NC_002947	4956751 =	64 (1.300)	4 (0.080)	4/248	NT	6.0%	coding (4/1374 nt) coding (767/792 nt)	fliI fliH	flagellum‑specific ATP synthase flagellar assembly protein FliH
	?	NC_002947	4956805 =	63 (1.320)					coding (713/792 nt)	fliH	flagellar assembly protein FliH
*	?	NC_002947	4961891 =	49 (0.990)	3 (0.060)	3/246	NT	6.3%	coding (547/1356 nt)	atoC	two‑component system DNA‑binding transcriptional activator AtoC
	?	NC_002947	4961922 =	42 (0.890)					coding (516/1356 nt)	atoC	two‑component system DNA‑binding transcriptional activator AtoC
*	?	NC_002947	4968256 =	47 (0.950)	4 (0.090)	4/240	NT	8.9%	coding (1987/2064 nt)	fliC	flagellin
	?	NC_002947	4968293 =	38 (0.820)					coding (1950/2064 nt)	fliC	flagellin
*	?	NC_002947	5022830 =	38 (0.770)	4 (0.090)	4/240	NT	10.2%	coding (181/657 nt)	PP_4427	amino acid ABC transporter permease
	?	NC_002947	5022927 =	35 (0.760)					coding (84/657 nt)	PP_4427	amino acid ABC transporter permease
*	?	NC_002947	= 5036750	NA (NA)	3 (0.070)	3/238	NT	NA	coding (241/336 nt)	PP_4442	transposase
	?	NC_002947	= 5036798	NA (NA)					coding (289/336 nt)	PP_4442	transposase
*	?	NC_002947	= 5097969	60 (1.220)	4 (0.080)	4/250	NT	6.6%	coding (1423/2091 nt)	acsA‑I	acetyl‑CoA synthetase
	?	NC_002947	= 5098011	54 (1.120)					coding (1381/2091 nt)	acsA‑I	acetyl‑CoA synthetase
*	?	NC_002947	5167753 =	53 (1.070)	4 (0.090)	4/242	NT	7.8%	coding (127/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5167791 =	45 (0.960)					coding (89/3906 nt)	hrpA	ATP‑dependent helicase HrpA
*	?	NC_002947	5174206 =	54 (1.090)	3 (0.060)	3/244	NT	5.9%	coding (774/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174263 =	45 (0.960)					coding (717/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
*	?	NC_002947	= 5198801	51 (1.030)	4 (0.090)	4/244	NT	7.6%	coding (88/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5198838	49 (1.040)					coding (125/912 nt)	PP_4579	LysR family transcriptional regulator
*	?	NC_002947	= 5220318	48 (0.970)	4 (0.130) +50 bp	4/156	NT	12.0%	coding (416/519 nt)	moaB‑II	molybdenum cofactor biosynthesis protein B
	?	NC_002947	6037861 =	NA (NA)					intergenic (+63/+154)	argB/PP_5290	acetylglutamate kinase/transposase
*	?	NC_002947	= 5231328	43 (0.870)	4 (0.090)	4/242	NT	8.2%	coding (1368/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
	?	NC_002947	= 5231362	49 (1.050)					coding (1334/1578 nt)	PP_4610	PepSY‑associated TM helix domain‑containing protein
*	?	NC_002947	= 5238639	53 (1.070)	4 (0.080)	4/250	NT	7.4%	coding (151/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5238748	48 (1.000)					intergenic (+56/‑225)	PP_5701/PP_4616	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5244969	31 (0.630)	4 (0.080)	4/248	NT	12.5%	coding (376/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5245017	26 (0.540)					coding (424/834 nt)	hmgR	Hmg transcriptional repressor
*	?	NC_002947	5252364 =	54 (1.090)	6 (0.130)	6/242	NT	9.4%	coding (153/456 nt)	PP_4628	hypothetical protein
	?	NC_002947	5252443 =	65 (1.390)					coding (74/456 nt)	PP_4628	hypothetical protein
*	?	NC_002947	= 5261211	56 (1.130)	4 (0.090)	3/240	NT	7.2%	coding (390/825 nt)	PP_4637	5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
	?	NC_002947	= 5261242	50 (1.080)					coding (359/825 nt)	PP_4637	5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase family protein
*	?	NC_002947	5288394 =	32 (0.650)	5 (0.130)	4/196	NT	15.3%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288488 =	31 (0.820)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5327969 =	55 (1.110)	6 (0.130)	4/242	NT	10.6%	coding (370/1038 nt)	PP_4688	heme/hemin ABC transporter permease
	?	NC_002947	5328031 =	49 (1.050)					coding (308/1038 nt)	PP_4688	heme/hemin ABC transporter permease
*	?	NC_002947	= 5380827	58 (1.170)	3 (0.060)	3/242	NT	5.5%	coding (129/537 nt)	bamE	outer membrane protein assembly factor BamE
	?	NC_002947	= 5380868	49 (1.050)					coding (170/537 nt)	bamE	outer membrane protein assembly factor BamE
*	?	NC_002947	= 5403984	44 (0.890)	4 (0.080)	4/246	NT	7.7%	intergenic (‑282/+435)	PP_4746/PP_4748	transposase/amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 5404032	54 (1.140)					intergenic (‑330/+387)	PP_4746/PP_4748	transposase/amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 5432480	56 (1.130)	4 (0.090)	4/242	NT	6.8%	coding (334/519 nt)	PP_5713	hypothetical protein
	?	NC_002947	= 5432517	57 (1.220)					coding (371/519 nt)	PP_5713	hypothetical protein
*	?	NC_002947	5445157 =	47 (0.950)	3 (0.060)	3/244	NT	6.1%	coding (113/798 nt)	thiD	phosphomethylpyrimidine kinase
	?	NC_002947	5445189 =	47 (1.000)					coding (145/798 nt)	thiD	phosphomethylpyrimidine kinase
*	?	NC_002947	5450336 =	56 (1.130)	3 (0.060)	3/242	NT	5.2%	coding (214/474 nt)	ybeY	endoribonuclease YbeY
	?	NC_002947	5450378 =	57 (1.220)					coding (256/474 nt)	ybeY	endoribonuclease YbeY
*	?	NC_002947	5450868 =	59 (1.200)	4 (0.090)	4/242	NT	6.5%	coding (247/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
	?	NC_002947	5450909 =	59 (1.260)					coding (288/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
*	?	NC_002947	5459626 =	40 (0.810)	4 (0.090)	4/240	NT	9.4%	coding (45/1038 nt)	holA	DNA polymerase III subunit delta
	?	NC_002947	5459676 =	40 (0.860)					coding (95/1038 nt)	holA	DNA polymerase III subunit delta
*	?	NC_002947	= 5493020	29 (0.590)	5 (0.110)	4/238	NT	15.4%	coding (996/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
	?	NC_002947	= 5493054	28 (0.610)					coding (962/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase
*	?	NC_002947	= 5560048	54 (1.090)	5 (0.110)	5/246	NT	8.5%	coding (449/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
	?	NC_002947	= 5560078	56 (1.180)					coding (419/1188 nt)	hisZ	ATP phosphoribosyltransferase regulatory subunit
*	?	NC_002947	= 5567397	46 (0.930)	5 (0.110)	4/244	NT	8.9%	coding (89/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	= 5567439	58 (1.230)					coding (47/1899 nt)	mutL	DNA mismatch repair protein MutL
*	?	NC_002947	= 5583793	54 (1.090)	4 (0.090)	4/242	NT	6.7%	coding (1939/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	= 5583844	60 (1.290)					coding (1888/2259 nt)	parC	DNA topoisomerase IV subunit A
*	?	NC_002947	5584642 =	53 (1.070)	3 (0.060)	3/240	NT	5.5%	coding (1090/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	5584675 =	54 (1.170)					coding (1057/2259 nt)	parC	DNA topoisomerase IV subunit A
*	?	NC_002947	5586334 =	46 (0.930)	3 (0.060)	3/242	NT	6.9%	coding (952/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	5586372 =	38 (0.810)					coding (914/1026 nt)	PP_4914	phytase‑like protein
*	?	NC_002947	= 5599515	44 (0.890)	4 (0.090)	4/244	NT	8.6%	coding (3967/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5599547	43 (0.910)					coding (3935/5418 nt)	PP_4924	subtilase family serine protease
*	?	NC_002947	5649805 =	48 (0.970)	3 (0.060)	3/242	NT	6.9%	coding (1388/2127 nt)	PP_4959	diguanylate cyclase
	?	NC_002947	5649839 =	35 (0.750)					coding (1354/2127 nt)	PP_4959	diguanylate cyclase
*	?	NC_002947	5681058 =	60 (1.220)	3 (0.060)	3/248	NT	5.1%	coding (225/618 nt)	PP_4986	hemolysin III family channel protein
	?	NC_002947	5681096 =	54 (1.130)					coding (187/618 nt)	PP_4986	hemolysin III family channel protein
*	?	NC_002947	= 5772407	66 (1.340)	4 (0.080)	4/248	NT	5.4%	coding (556/2004 nt)	betT‑I	choline transporter
	?	NC_002947	= 5772451	75 (1.570)					coding (512/2004 nt)	betT‑I	choline transporter
*	?	NC_002947	5785094 =	62 (1.260)	4 (0.090)	3/244	NT	6.1%	coding (98/1461 nt)	PP_5068	hypothetical protein
	?	NC_002947	5785152 =	63 (1.340)					coding (156/1461 nt)	PP_5068	hypothetical protein
*	?	NC_002947	= 5811876	35 (0.710)	3 (0.060)	3/242	NT	7.5%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	41 (0.880)					coding (1235/2220 nt)	priA	primosome assembly protein
*	?	NC_002947	5818983 =	57 (1.150)	4 (0.080)	4/246	NT	5.8%	coding (252/819 nt)	proI	pyrroline‑5‑carboxylate reductase
	?	NC_002947	5819058 =	76 (1.600)					coding (327/819 nt)	proI	pyrroline‑5‑carboxylate reductase
*	?	NC_002947	= 5826216	69 (1.400)	4 (0.090)	4/244	NT	6.0%	coding (79/813 nt)	thiG	thiazole synthase
	?	NC_002947	= 5826245	59 (1.250)					coding (50/813 nt)	thiG	thiazole synthase
*	?	NC_002947	5841842 =	44 (0.890)	4 (0.080)	4/248	NT	8.5%	coding (411/1431 nt)	calB	coniferyl aldehyde dehydrogenase
	?	NC_002947	5841870 =	44 (0.920)					coding (439/1431 nt)	calB	coniferyl aldehyde dehydrogenase
*	?	NC_002947	= 5859694	67 (1.360)	4 (0.080)	4/250	NT	5.5%	coding (292/1026 nt)	PP_5135	ABC transporter substrate‑binding protein
	?	NC_002947	= 5859734	73 (1.510)					coding (252/1026 nt)	PP_5135	ABC transporter substrate‑binding protein
*	?	NC_002947	5870261 =	28 (0.570)	4 (0.100)	3/198	NT	17.5%	intergenic (+22/+112)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
	?	NC_002947	5870354 =	16 (0.420)					intergenic (+115/+19)	PP_5144/ptsP	hypothetical protein/phosphoenolpyruvate‑dependent regulator
*	?	NC_002947	= 5925900	41 (0.830)	4 (0.090)	3/240	NT	9.9%	coding (245/1083 nt)	gcvT‑II	aminomethyltransferase
	?	NC_002947	= 5925938	34 (0.730)					coding (207/1083 nt)	gcvT‑II	aminomethyltransferase
*	?	NC_002947	= 5952865	47 (0.950)	4 (0.090)	4/244	NT	8.2%	coding (92/2184 nt)	ppk	polyphosphate kinase
	?	NC_002947	= 5952895	45 (0.960)					coding (62/2184 nt)	ppk	polyphosphate kinase
*	?	NC_002947	5962157 =	62 (1.260)	3 (0.060)	3/246	NT	5.1%	coding (1053/1248 nt)	lysA‑II	diaminopimelate decarboxylase
	?	NC_002947	5962207 =	51 (1.080)					coding (1103/1248 nt)	lysA‑II	diaminopimelate decarboxylase
*	?	NC_002947	= 5972766	52 (1.050)	5 (0.110)	5/244	NT	9.7%	coding (55/288 nt)	PP_5725	hypothetical protein
	?	NC_002947	= 5972791	44 (0.940)					coding (80/288 nt)	PP_5725	hypothetical protein
*	?	NC_002947	5984910 =	71 (1.440)	4 (0.090)	4/242	NT	5.8%	coding (210/627 nt)	ycaC‑II	putative hydrolase
	?	NC_002947	5984947 =	64 (1.370)					coding (173/627 nt)	ycaC‑II	putative hydrolase
*	?	NC_002947	5987288 =	58 (1.170)	5 (0.100)	4/248	NT	8.5%	coding (370/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
	?	NC_002947	5987333 =	51 (1.070)					coding (415/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
*	?	NC_002947	= 5999327	59 (1.200)	3 (0.070)	3/226	NT	5.6%	intergenic (‑182/‑139)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein
	?	NC_002947	= 5999357	50 (1.150)					intergenic (‑212/‑109)	ycaC‑IV/PP_5256	putative hydrolase/cyclic nucleotide‑binding protein
*	?	NC_002947	6000903 =	60 (1.220)	6 (0.160)	6/196	NT	16.2%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6000997 =	16 (0.420)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
*	?	NC_002947	6011868 =	60 (1.220)	4 (0.080)	4/246	NT	6.3%	coding (720/2010 nt)	rep	single‑stranded DNA dependent ATPase
	?	NC_002947	6011913 =	62 (1.310)					coding (765/2010 nt)	rep	single‑stranded DNA dependent ATPase
*	?	NC_002947	6019248 =	75 (1.520)	5 (0.120)	5/210	NT	9.2%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6019324 =	37 (0.910)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6056495	55 (1.110)	3 (0.060)	3/246	NT	5.4%	coding (622/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056520	53 (1.120)					coding (647/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
*	?	NC_002947	= 6059891	57 (1.150)	5 (0.110)	3/244	NT	8.5%	coding (931/1404 nt)	PP_5311	signal transduction protein
	?	NC_002947	= 6059929	53 (1.130)					coding (969/1404 nt)	PP_5311	signal transduction protein
*	?	NC_002947	= 6078715	55 (1.110)	3 (0.060)	3/242	NT	5.7%	coding (511/1290 nt)	PP_5330	MFS transporter
	?	NC_002947	= 6078761	47 (1.010)					coding (465/1290 nt)	PP_5330	MFS transporter
*	?	NC_002947	6079724 =	61 (1.240)	4 (0.090)	4/242	NT	6.8%	coding (138/399 nt)	PP_5331	acyl‑CoA thioesterase
	?	NC_002947	6079785 =	52 (1.110)					coding (199/399 nt)	PP_5331	acyl‑CoA thioesterase
*	?	NC_002947	6117218 =	46 (0.930)	4 (0.090)	4/244	NT	8.7%	intergenic (+26/+86)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein
	?	NC_002947	6117252 =	40 (0.850)					intergenic (+60/+52)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein
*	?	NC_002947	= 6178440	44 (0.890)	5 (0.110)	5/246	NT	10.8%	coding (638/1545 nt)	atpA	ATP synthase subunit alpha
	?	NC_002947	= 6178464	40 (0.840)					coding (614/1545 nt)	atpA	ATP synthase subunit alpha