Mon Feb 17 17:43:16 2020

/usr/bin/breseq-0.33.1-Linux-x86_64/bin/breseq --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -p -j 1 -o breseq_processes/3 -r /var/data/Pseudomonas_putida_KT2440.gb /var/alemutpipe-outputs/good/ALE-3_S3_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L001_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L002_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L002_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L003_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L003_R2_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L004_R1_001.good.fq.gz /var/alemutpipe-outputs/good/ALE-3_S3_L004_R2_001.good.fq.gz