mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 22.4% | 70.5 / 19.3 | 51 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 187 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 225281 | NA (NA) | 8 (0.200) | 7/272 | 4.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_KO_pgi | 1097007 = | 51 (1.250) | 8 (0.200) | 7/276 | 4.2 | 17.6% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097534 = | 25 (0.630) | intergenic (+705/+31) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 1097007 = | 51 (1.250) | 8 (0.200) | 7/276 | 4.2 | 13.8% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097172 = | NA (NA) | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 1096961 = | 59 (1.440) | 3 (0.110) +47 bp |
3/188 | 4.4 | 7.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 1096961 = | 59 (1.440) | 3 (0.110) +47 bp |
3/188 | 4.4 | 8.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097062 = | 44 (1.080) | intergenic (+233/+503) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 951207 = | 45 (1.100) | 6 (0.150) | 6/270 | 4.5 | 13.2% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913_3_KO_pgi | 951233 = | 36 (0.920) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||
| * | ? | NC_000913_3_KO_pgi | 1097372 = | NA (NA) | 6 (0.150) | 6/276 | 4.6 | 19.7% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097531 = | 25 (0.610) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 1097188 = | 24 (0.590) | 6 (0.150) | 6/276 | 4.6 | 17.0% | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097353 = | 35 (0.880) | intergenic (+524/+212) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 1096988 = | 52 (1.270) | 6 (0.150) | 6/276 | 4.6 | 10.5% | intergenic (+159/+577) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_KO_pgi | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_KO_pgi | 3239675 = | 38 (0.930) | 5 (0.130) | 5/272 | 4.9 | 11.4% | intergenic (+130/‑269) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| ? | NC_000913_3_KO_pgi | 3239699 = | 41 (1.040) | intergenic (+154/‑245) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter | |||||