New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_KO_pgi	2219625 =	NA (NA)	5 (0.100)	5/272	6.7	6.7%	noncoding (1/34 nt)	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_KO_pgi	3114542 =	70 (1.450)					noncoding (165/168 nt)	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATGCTTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGAACTTGCCAGGCTCGGCGTC  >  NC_000913_3_KO_pgi/2219481‑2219772                                                                                                                                                 |                                                                                                                                                    tgatgCTTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATCATGGCGGCGTTAGCTTGCGCGGAAGGATTCAGTTTCCGAATCAGATCAATACTTAAGAGGCATATTCCGTCCGGCGTTTCCTGCCgg                                                                                                                                                 >  2:93022/1‑149 (MQ=255)    tgCTTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGGTTCAGTTCGAGAATCAGTTAAATACTTAAGAGGCCTATTCGGTCCGACGTTTCCTGCCGGATg                                                                                                                                              >  1:394870/1‑149 (MQ=255)            tCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGa                                                                                                                                      >  1:873307/1‑149 (MQ=255)            tCATTCTTTTACTGGTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCCGAATCAGATAAATACTTAAGAGGCCTCTTCGGTCCGGCGTTTCCTGCCGGGGGCGGCGCGa                                                                                                                                      >  1:384699/1‑149 (MQ=255)                tCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGCTTCCTGCCGGATGCGGCGCGAgcgc                                                                                                                                  <  1:685073/149‑1 (MQ=255)                        tgttgtTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCg                                                                                                                          >  2:702848/1‑149 (MQ=255)                          ttgttTTCAGCGAATTAATAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTCCAGAATCAGATAAATACTGAAGAGGCATATTCGGTCCGGCCTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGc                                                                                                                        <  2:304669/149‑1 (MQ=255)                          ttgttTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGc                                                                                                                        <  1:559078/149‑1 (MQ=255)                           tgttTTCAGCGAATTAAGAGAAAAGCAGAGTTTATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGcc                                                                                                                       <  2:340871/149‑1 (MQ=255)                             ttttCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTTCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCCGATGCGGCGCGAGCGCCTTATCCGGCCTa                                                                                                                     >  2:734044/1‑149 (MQ=255)                              tttCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTAc                                                                                                                    >  1:552925/1‑149 (MQ=255)                                  aGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAg                                                                                                                >  2:54801/1‑149 (MQ=255)                                   gccagtcaaGAGAAAGGCATAGTGGATAATGGCGGGTGTAGCTTGAGGGGAAGGATTCAGTTGTAGAAGCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTGCTGACGGATGCGGCGCGGGCGCCTTATCCGGCCTACAAAgg                                                                                                               <  2:420678/142‑1 (MQ=255)                                   gCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCTGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAgg                                                                                                               <  1:587216/149‑1 (MQ=255)                                   gCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAgg                                                                                                               <  1:463086/149‑1 (MQ=255)                                     gAATTAAGAGAAAAGTATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGgc                                                                                                             <  2:576208/149‑1 (MQ=255)                                     gAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGgc                                                                                                             <  2:164775/149‑1 (MQ=255)                                               aaaaGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTcg                                                                                                   <  1:362317/149‑1 (MQ=255)                                                  aGCATAGTTGATAATGGCGGGGTTAGCTTGACCGGAAGGATTCAGTTGCAGAAACAGATAAATACTTAAAAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGGGGCCCGAGCGCCTTATCCGGCCTAAAAAAGACGCAACCGgcgcgc                                                                                                >  2:36791/1‑149 (MQ=255)                                                        gTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCttgc                                                                                          >  1:695680/1‑147 (MQ=255)                                                           gATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTa                                                                                           >  2:699301/1‑145 (MQ=255)                                                           gATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTa                                                                                           <  1:699301/145‑1 (MQ=255)                                                            aTAATGGCGGGGTTAGCTTGAGCGGATGGATTTAGTTGGAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTaaa                                                                                      <  1:617232/149‑1 (MQ=255)                                                            aTAATGGCGGGGTTAGCTCGAGCGGAAGGATTCAGTTGCAGAATCAGCTAAATACTTAAGAGGCATATTCGGTCCGGCGATTCCTGCCGGATGCGGCGCGAGCGCTTTATCCGGCCTACAAAGTGCGCAAACGTCGCGCCCTTACTaaa                                                                                      <  1:688465/149‑1 (MQ=255)                                                             tAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAg                                                                                     <  1:702848/149‑1 (MQ=255)                                                               aTGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGGGGCATATTCGGTCCTGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGGCTACAAAGGGCGCAAACGTCGCGCCCTTACTGAAGCa                                                                                   >  2:654639/1‑149 (MQ=255)                                                                  gCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTa                                                                                <  1:487571/149‑1 (MQ=255)                                                                         tAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAAc                                                                         <  2:873307/149‑1 (MQ=255)                                                                             ttGAGCGGAAGAATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTAGGTCCAGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGGCCTTACTAAAGCATTACAGCAAATcga                                                                     >  2:463408/1‑147 (MQ=39)                                                                              tGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCaaa                                                                    <  1:552858/149‑1 (MQ=255)                                                                              tGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCaaa                                                                    <  2:466875/149‑1 (MQ=255)                                                                                  cGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGCTGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAACCATTACCCAAACTCAAACTCg                                                                >  2:64010/1‑149 (MQ=255)                                                                                        gATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTc                                                          >  1:152500/1‑149 (MQ=255)                                                                                                        cAGATAAATACTGAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAAt                                          <  1:190846/149‑1 (MQ=255)                                                                                                         aGATAAATACTCAAGAGGCATATGCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATc                                         <  2:31287/149‑1 (MQ=255)                                                                                                            tAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGt                                      <  1:68641/149‑1 (MQ=255)                                                                                                               aTACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCgcgc                                                                                                <  1:713650/88‑1 (MQ=255)                                                                                                               aTACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCgcgc                                                                                                >  2:713650/1‑88 (MQ=255)                                                                                                               aTACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGGCACTCAAACTCGCCTTTCTTAACGCGTGCGGAATAAGTGcc                                   >  2:619751/1‑149 (MQ=255)                                                                                                                tACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTc                                                          <  2:556452/125‑1 (MQ=255)                                                                                                                tACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTc                                                          >  1:556452/1‑125 (MQ=255)                                                                                                                   ttAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCAAAAAAGGGCGCAGACGTCGCGCCCTTACTAAAGCCTTGCAGCAACTCAAACTCGCCTTTCTTAACGCGTACGGAATCAGTGCCGATa                               >  2:450581/1‑149 (MQ=255)                                                                                                                         ggCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAg                            <  2:128578/146‑1 (MQ=255)                                                                                                                         ggCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTACCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAg                            >  1:128578/1‑146 (MQ=255)                                                                                                                            atatTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGGATTATCCGGCCTAACTGGGGCCCAAACGTCGCGCCCTTACTAAAGCCTTACAGAAACTCAAACTCGCCTTTCTTACCCGGTGCGGAATCAATGCCGACTAAGaacttg                      >  2:327727/1‑144 (MQ=255)                                                                                                                                              ccggCCGGATGCGGCGCCAGCTCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACCCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGAACTTGCCAGGCTCGGCg    <  1:405968/146‑1 (MQ=255)                                                                                                                                                tGCCGGATGCGGCGCGAGCGCCTTATCCGGCGTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGCACTTGCAAGGCTCcgcggc  >  2:863781/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGATGCTTTCCTCATTCTTTTACTGTTGTTTTCAGCGAATTAAGAGAAAAGCATAGTTGATAATGGCGGGGTTAGCTTGAGCGGAAGGATTCAGTTGCAGAATCAGATAAATACTTAAGAGGCATATTCGGTCCGGCGTTTCCTGCCGGATGCGGCGCGAGCGCCTTATCCGGCCTACAAAGGGCGCAAACGTCGCGCCCTTACTAAAGCATTACAGCAACTCAAACTCGCCTTTCTTAACGCGTGCGGAATCAGTGCCGATAAAGACATTGAACTTGCCAGGCTCGGCGTC  >  NC_000913_3_KO_pgi/2219481‑2219772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.