Thu Feb  3 20:24:52 2022

/usr/bin/breseq-0.35.4-Linux-x86_64/bin/breseq -j 2 --consensus-frequency-cutoff=0.75 --require-match-fraction=0.95 -o breseq_processes/0 -r /var/data/NC_00913_3.gb /var/alemutpipe-outputs/good/JBEISALT_PLXW_3Strain_A_3_F_82_I1_S243_ME_L001_R1_001.good.fq.gz /var/alemutpipe-outputs/good/JBEISALT_PLXW_3Strain_A_3_F_82_I1_S243_ME_L001_R2_001.good.fq.gz