Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
13 3 4
15 3 4
17 3 3
19 3 4
21 3 4
23 3 4
7 19 24

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 84 105
Multiple Base Substitutions 0 0
Deletions 13 14
Insertions 16 19
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 113 138

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 48 0 63.8 2989836 94.5% 2825395 139.3
A13 F28 I1 R1 49 0 74.1 3405600 94.6% 3221697 141.5
A13 F65 I1 R1 54 0 67.7 3126398 94.6% 2957572 141.0
A13 F103 I0 R1 1593 0 59.4 2889406 94.0% 2716041 140.5
A13 F103 I2 R1 53 0 31.5 1385422 96.5% 1336932 146.2
A15 F27 I1 R1 49 0 62.2 2883858 93.4% 2693523 142.0
A15 F70 I1 R1 48 0 73.3 3202848 96.5% 3090748 141.5
A15 F112 I0 R1 1434 0 61.8 2963302 95.2% 2821063 140.4
A15 F112 I2 R1 54 0 26.1 1107868 96.7% 1071308 145.9
A17 F30 I1 R1 47 0 66.3 3044154 95.1% 2894990 142.9
A17 F63 I1 R1 49 0 71.0 3360508 94.5% 3175680 138.1
A17 F107 I0 R1 1271 0 54.2 2599312 94.9% 2466747 140.9
A19 F32 I1 R1 58 0 62.1 3119284 94.1% 2935246 140.7
A19 F59 I1 R1 50 0 53.8 2482450 93.2% 2313643 143.2
A19 F119 I0 R1 1314 0 58.2 2860838 94.7% 2709213 140.3
A19 F119 I2 R1 61 0 29.7 1365986 97.4% 1330470 146.2
A21 F28 I1 R1 49 0 59.7 2689356 96.3% 2589849 141.7
A21 F72 I1 R1 54 0 71.6 3318548 93.8% 3112798 141.8
A21 F113 I0 R1 1665 0 58.2 2847182 94.4% 2687739 138.8
A21 F113 I2 R1 52 0 32.3 1402968 97.1% 1362281 146.1
A23 F30 I1 R1 49 0 78.6 3601400 95.0% 3421330 141.3
A23 F75 I1 R1 49 0 69.1 3320668 91.0% 3021807 140.8
A23 F114 I0 R1 1965 0 55.6 2796252 92.6% 2589329 137.9
A23 F114 I2 R1 53 0 35.3 1558392 96.1% 1497614 145.7

Mutation Needle Plot

Mutation Targets

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