breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	1,699	G→T	6.5%	P41Q (CCG→CAG)	parA ←	chromosome partition protein
RA	1,706	G→C	7.8%	L39V (CTC→GTC)	parA ←	chromosome partition protein
RA	1,707	G→C	7.8%	D38E (GAC→GAG)	parA ←	chromosome partition protein
RA	3,120	A→T	6.0%	L421* (TTG→TAG) ‡	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,121	A→G	6.0%	L421L (TTG→CTG) ‡	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	3,126	A→C	6.2%	I419S (ATT→AGT)	trmF ←	tRNA uridine 5‑carboxymethylaminomethyl modification protein
RA	6,332	C→A	7.6%	R17R (CGG→CGT)	trmE ←	GTPase
RA	6,339	T→A	7.1%	Q15L (CAG→CTG)	trmE ←	GTPase
RA	6,346	T→G	6.9%	T13P (ACG→CCG)	trmE ←	GTPase
RA	16,945	T→C	7.8%	T119T (ACT→ACC)	PP_5421 →	hypothetical protein
RA	25,224	T→A	6.3%	V177D (GTC→GAC)	PP_0020 →	hypothetical protein
RA	29,915	G→A	7.0%	intergenic (‑368/+75)	PP_0024 ← / ← PP_0025	membrane‑associated metal‑dependent hydrolase/hypothetical protein
RA	29,916	T→A	7.0%	intergenic (‑369/+74)	PP_0024 ← / ← PP_0025	membrane‑associated metal‑dependent hydrolase/hypothetical protein
RA	29,917	T→A	8.0%	intergenic (‑370/+73)	PP_0024 ← / ← PP_0025	membrane‑associated metal‑dependent hydrolase/hypothetical protein
RA	29,918	T→C	7.0%	intergenic (‑371/+72)	PP_0024 ← / ← PP_0025	membrane‑associated metal‑dependent hydrolase/hypothetical protein
RA	35,009	A→G	6.6%	intergenic (+27/+31)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	35,012	C→T	6.1%	intergenic (+30/+28)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	36,169	G→T	18.9%	intergenic (+54/+29)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,171	A→T	20.7%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	19.3%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	19.2%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,671	A→G	7.4%	W328R (TGG→CGG)	PP_0033 ←	undecaprenyl‑glycosyl transferase
RA	49,672	A→C	11.2%	R326R (CGT→CGG) ‡	czcB‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	49,673	C→G	9.6%	R326P (CGT→CCT) ‡	czcB‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	49,674	G→T	11.5%	R326S (CGT→AGT) ‡	czcB‑I ←	cobalt‑zinc‑cadmium resistance protein
RA	58,435	G→C	7.3%	intergenic (‑346/+342)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,437	T→A	7.1%	intergenic (‑348/+340)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,439	G→C	8.9%	intergenic (‑350/+338)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,747	T→A	16.3%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	14.9%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,766	C→T	10.3%	intergenic (‑677/+11)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	61,255	G→A	9.7%	R142H (CGT→CAT) ‡	PP_0052 →	beta‑lactamase domain‑containing protein
RA	61,256	T→G	9.8%	R142R (CGT→CGG) ‡	PP_0052 →	beta‑lactamase domain‑containing protein
RA	61,260:1	+G	10.0%	coding (430/885 nt)	PP_0052 →	beta‑lactamase domain‑containing protein
RA	61,265	Δ1 bp	10.5%	coding (435/885 nt)	PP_0052 →	beta‑lactamase domain‑containing protein
RA	61,270	C→A	10.2%	P147H (CCT→CAT) ‡	PP_0052 →	beta‑lactamase domain‑containing protein
RA	61,271	T→C	10.2%	P147P (CCT→CCC) ‡	PP_0052 →	beta‑lactamase domain‑containing protein
RA	64,006	G→T	6.9%	P237H (CCC→CAC)	PP_0055 ←	transcriptional regulator
RA	68,340	G→T	8.7%	intergenic (+28/+147)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,342	A→T	7.8%	intergenic (+30/+145)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	68,344	A→C	7.8%	intergenic (+32/+143)	PP_0057 → / ← PP_0058	major facilitator family transporter/1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase
RA	85,066	T→C	13.6%	intergenic (+44/+86)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,074	A→G	14.0%	intergenic (+52/+78)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,077	T→G	12.2%	intergenic (+55/+75)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,078:1	+T	13.2%	intergenic (+56/+74)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,081	T→G	15.6%	intergenic (+59/+71)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,088	C→A	13.9%	intergenic (+66/+64)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,091	Δ1 bp	12.8%	intergenic (+69/+61)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,093	C→A	12.6%	intergenic (+71/+59)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	85,096	C→T	13.5%	intergenic (+74/+56)	aroE → / ← PP_0075	shikimate 5‑dehydrogenase/choline sulfate transporter
RA	96,132	C→G	7.1%	G185R (GGC→CGC)	PP_0088 ←	alkanal monooxygenase
RA	96,133	G→C	7.0%	R184R (CGC→CGG) ‡	PP_0088 ←	alkanal monooxygenase
RA	96,134	C→G	7.0%	R184P (CGC→CCC) ‡	PP_0088 ←	alkanal monooxygenase
RA	101,802	A→C	10.3%	K208Q (AAG→CAG) ‡	prlC →	oligopeptidase A
RA	101,803	A→T	10.3%	K208M (AAG→ATG) ‡	prlC →	oligopeptidase A
RA	101,804	G→T	10.7%	K208N (AAG→AAT) ‡	prlC →	oligopeptidase A
RA	103,818	A→T	9.3%	intergenic (+116/‑24)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,819	T→A	8.6%	intergenic (+117/‑23)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,820	T→A	10.0%	intergenic (+118/‑22)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	103,821	A→T	10.1%	intergenic (+119/‑21)	PP_0098 → / → PP_0099	hypothetical protein/hypothetical protein
RA	104,876	G→C	10.1%	P345P (CCG→CCC)	PP_0099 →	hypothetical protein
RA	132,463	G→A	10.4%	intergenic (+37/‑115)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,467	G→C	9.4%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,471	T→C	9.4%	intergenic (+45/‑107)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	142,172	T→C	5.8%	L39S (TTG→TCG)	PP_0134 →	hypothetical protein
RA	159,931	A→T	7.3%	L153Q (CTG→CAG)	PP_0149 ←	hypothetical protein
RA	182,034	G→A	11.0%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,035	A→T	10.8%	intergenic (+24/+41)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036	T→C	10.8%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	188,613	T→C	12.5%	L241P (CTG→CCG)	PP_0165 →	GGDEF domain‑containing protein
RA	188,615	A→G	12.5%	T242A (ACC→GCC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,616	C→T	12.0%	T242I (ACC→ATC) ‡	PP_0165 →	GGDEF domain‑containing protein
RA	188,618	G→A	12.0%	G243R (GGG→AGG)	PP_0165 →	GGDEF domain‑containing protein
RA	195,559	C→A	34.5%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	10.6%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	10.7%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	46.8%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	195,724	A→G	6.6%	V410V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	18.6%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	21.8%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	27.0%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,372	A→G	9.1%	K626K (AAA→AAG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	22.8%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	6.7%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	14.9%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	5.2%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	7.6%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	21.0%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	22.8%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	12.6%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	6.4%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	211,621	G→C	6.2%	V5709V (GTG→GTC)	PP_0168 →	putative surface adhesion protein
RA	222,817	C→T	8.0%	Y224Y (TAC→TAT)	PP_0170 →	ABC transporter substrate‑binding protein
RA	226,226	T→A	6.7%	L151Q (CTG→CAG)	PP_0174 →	hypothetical protein
RA	235,390	G→A	8.4%	intergenic (+87/+38)	PP_0183 → / ← argH	glutathione S‑transferase/argininosuccinate lyase
RA	239,631	G→A	11.1%	A238T (GCC→ACC) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,633	C→T	10.3%	A238A (GCC→GCT) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,634	A→G	10.4%	S239G (AGT→GGT) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,636	T→C	10.6%	S239S (AGT→AGC) ‡	hemD →	uroporphyrinogen‑III synthase
RA	239,942	G→T	7.2%	E79D (GAG→GAT)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	239,944	C→T	8.0%	A80V (GCG→GTG)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	239,949	A→G	6.3%	T82A (ACC→GCC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	240,396	G→A	8.1%	D231N (GAC→AAC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	253,256	C→G	7.5%	intergenic (‑41/+130)	PP_0202 ← / ← PP_0203	CBS domain‑containing protein/dipeptidase
RA	274,692	T→C	5.4%	K419R (AAG→AGG)	PP_0222 ←	DszA family monooxygenase
RA	278,742:1	+A	100%	intergenic (‑237/+77)	PP_0224 ← / ← sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
RA	283,151	T→A	6.2%	I201N (ATC→AAC)	betT‑II →	choline/carnitine/betaine transporter
RA	285,098	G→T	5.4%	P118T (CCT→ACT)	atsK ←	alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	287,067	G→C	17.2%	P19R (CCG→CGG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	287,068	G→C	15.0%	P19A (CCG→GCG) ‡	tauB‑II ←	taurine ABC transporter ATP‑binding protein
RA	289,942	C→A	6.3%	intergenic (+26/‑140)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,944	G→C	5.8%	intergenic (+28/‑138)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	289,946	T→G	5.8%	intergenic (+30/‑136)	oprE → / → PP_0235	outer‑membrane porin E/peroxidase
RA	307,865:1	+C	100%	intergenic (+880/‑989)	hslO → / → PP_0254	molecular chaperone HslO/hypothetical protein
RA	317,974	Δ1 bp	7.7%	coding (1768/1815 nt)	PP_0264 ←	sensor histidine kinase
RA	322,100	C→T	6.4%	intergenic (+387/+71)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,133	G→A	12.7%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,140	T→C	13.0%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	326,065	C→A	12.1%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,068	T→G	10.9%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	336,124:1	+T	100%	coding (209/237 nt)	PP_0278 →	hypothetical protein
RA	337,809	A→G	28.0%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,816:1	+A	21.4%	intergenic (‑66/+63)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,819	A→C	17.9%	intergenic (‑69/+60)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,822	C→G	19.3%	intergenic (‑72/+57)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,825	G→T	18.8%	intergenic (‑75/+54)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,827	Δ1 bp	19.4%	intergenic (‑77/+52)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	337,836	C→T	25.0%	intergenic (‑86/+43)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	343,510	G→T	6.4%	intergenic (‑66/‑174)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,512:1	+A	6.6%	intergenic (‑68/‑172)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,518	T→C	6.0%	intergenic (‑74/‑166)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,607	T→A	10.2%	intergenic (‑163/‑77)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,608	G→C	10.6%	intergenic (‑164/‑76)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	343,609	T→A	10.9%	intergenic (‑165/‑75)	PP_5439 ← / → PP_5440	hypothetical protein/hypothetical protein
RA	344,032	A→G	15.1%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,041	Δ1 bp	15.4%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,045:1	+T	15.6%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	353,067	A→G	100%	intergenic (+34/+84)	hisF → / ← cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
RA	354,547	T→C	5.8%	S209G (AGC→GGC)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,548	T→A	5.6%	P208P (CCA→CCT)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	354,883	G→T	8.2%	Q97K (CAG→AAG)	cbcW ←	choline/betaine/carnitine ABC transporter permease
RA	355,218	C→A	17.3%	intergenic (‑47/+38)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,219	A→C	18.4%	intergenic (‑48/+37)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,222	G→T	16.1%	intergenic (‑51/+34)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	355,223	T→G	15.8%	intergenic (‑52/+33)	cbcW ← / ← cbcX	choline/betaine/carnitine ABC transporter permease/choline/betaine/carnitine ABC transporter substrate‑binding protein
RA	374,771	C→T	8.3%	P21S (CCG→TCG)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	374,775	T→G	8.5%	L22R (CTG→CGG)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	374,782	C→A	9.3%	A24A (GCC→GCA)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	374,784:1	+G	9.3%	coding (74/1233 nt)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	374,786	A→G	9.1%	M26V (ATG→GTG)	PP_0312 →	electron transfer flavoprotein subunit alpha
RA	385,476	C→G	10.0%	intergenic (+16/+19)	PP_0320 → / ← ltaE	methyl‑accepting chemotaxis transducer/low specificity l‑threonine aldolase
RA	388,722	T→A	9.1%	L198Q (CTG→CAG)	soxB →	sarcosine oxidase subunit beta
RA	402,065	A→C	5.7%	I154S (ATC→AGC)	PP_0335 ←	glutathione S‑transferase family protein
RA	402,067	C→G	5.5%	L153L (CTG→CTC) ‡	PP_0335 ←	glutathione S‑transferase family protein
RA	402,069	G→T	5.5%	L153M (CTG→ATG) ‡	PP_0335 ←	glutathione S‑transferase family protein
RA	410,834	A→G	8.0%	intergenic (‑171/‑213)	aceE ← / → glnE	pyruvate dehydrogenase E1 component/glutamate‑ammonia‑ligase adenylyltransferase
RA	417,306	A→T	7.4%	Q339L (CAG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,310	G→A	7.8%	A340A (GCG→GCA)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,317	A→T	7.3%	S343C (AGC→TGC)	waaG →	lipopolysaccharide glucosyltransferase I
RA	419,313	C→T	8.4%	A122V (GCC→GTC)	PP_0346 →	heptose kinase WapQ
RA	427,752	A→C	6.8%	L16R (CTG→CGG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	427,753	G→T	6.7%	L16M (CTG→ATG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	431,350	C→T	7.6%	G322S (GGC→AGC)	PP_0354 ←	CBS domain‑containing protein
RA	431,355	A→G	7.5%	L320P (CTG→CCG)	PP_0354 ←	CBS domain‑containing protein
RA	431,362	C→T	7.6%	V318I (GTT→ATT)	PP_0354 ←	CBS domain‑containing protein
RA	432,993	A→T	6.7%	intergenic (+18/+29)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	432,994	A→T	6.7%	intergenic (+19/+28)	PP_0355 → / ← glcB	two‑component system response regulator/malate synthase G
RA	435,369	T→C	6.8%	intergenic (‑170/‑280)	glcB ← / → PP_0357	malate synthase G/ACT domain‑containing protein
RA	461,030	C→G	11.2%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,037	T→G	11.4%	P476P (CCA→CCC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	465,442	A→G	11.9%	L124L (TTG→CTG)	PP_0384 ←	AsnC family transcriptional regulator
RA	465,446	A→G	11.7%	D122D (GAT→GAC) ‡	PP_0384 ←	AsnC family transcriptional regulator
RA	465,447	T→A	11.7%	D122V (GAT→GTT) ‡	PP_0384 ←	AsnC family transcriptional regulator
RA	465,448	C→T	12.0%	D122N (GAT→AAT) ‡	PP_0384 ←	AsnC family transcriptional regulator
RA	465,452	C→T	11.3%	Q120Q (CAG→CAA)	PP_0384 ←	AsnC family transcriptional regulator
RA	467,649	T→C	7.4%	Q1103R (CAG→CGG)	PP_0386 ←	sensory box protein
RA	473,116	T→C	6.0%	E623E (GAA→GAG)	dnaG ←	DNA primase
RA	473,169	A→G	6.2%	F606L (TTT→CTT)	dnaG ←	DNA primase
RA	491,016	T→C	6.5%	T469A (ACC→GCC)	lptD ←	LPS‑assembly protein LptD
RA	491,017	C→G	5.4%	A468A (GCG→GCC)	lptD ←	LPS‑assembly protein LptD
RA	493,321	G→A	6.6%	A257A (GCG→GCA)	PP_0405 →	hypothetical protein
RA	494,811	C→T	8.3%	A191V (GCG→GTG)	djlA →	DnaJ‑like protein DjlA
RA	499,203	A→G	100%	intergenic (+47/‑249)	uhpA → / → PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
RA	503,825	Δ1 bp	8.6%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,831	A→T	11.9%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,832	A→T	11.9%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,837:1	+C	13.0%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	505,105	T→C	7.5%	L163L (TTG→CTG)	PP_0416 →	phosphoglycolate phosphatase
RA	524,365	C→T	11.5%	intergenic (+232/‑584)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	535,818	G→T	8.6%	E85* (GAA→TAA) ‡	rplA →	50S ribosomal protein L1
RA	535,819	A→C	8.1%	E85A (GAA→GCA) ‡	rplA →	50S ribosomal protein L1
RA	537,458	T→A	6.3%	noncoding (54/66 nt)	PP_mr07 →	P26 ncRNA
RA	537,461	T→A	6.1%	noncoding (57/66 nt)	PP_mr07 →	P26 ncRNA
RA	556,986	A→C	8.9%	K12T (AAG→ACG)	rpsN →	30S ribosomal protein S14
RA	556,989	G→T	8.3%	R13L (CGT→CTT)	rpsN →	30S ribosomal protein S14
RA	558,477	A→C	5.3%	E21D (GAA→GAC)	rplR →	50S ribosomal protein L18
RA	565,986	T→A	7.8%	intergenic (+26/‑138)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,987	C→A	8.6%	intergenic (+27/‑137)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,990	T→G	7.3%	intergenic (+30/‑134)	katA → / → bfr‑I	catalase/bacterioferritin
RA	565,991	T→A	7.7%	intergenic (+31/‑133)	katA → / → bfr‑I	catalase/bacterioferritin
RA	566,888	G→A	8.1%	L870L (CTG→TTG)	uvrA ←	uvrABC excinuclease protein A
RA	566,889	T→C	7.7%	Q869Q (CAA→CAG)	uvrA ←	uvrABC excinuclease protein A
RA	573,559	G→T	8.4%	S108S (TCG→TCT)	PP_0487 →	membrane protein
RA	575,944	C→T	5.3%	Y327Y (TAC→TAT)	fdoG →	formate dehydrogenase‑O major subunit
RA	581,758	G→A	5.5%	A350T (GCC→ACC)	selA →	selenocysteine synthase
RA	593,433	G→T	7.4%	E391* (GAG→TAG) ‡	PP_0503 →	MFS transporter
RA	593,434	A→C	7.4%	E391A (GAG→GCG) ‡	PP_0503 →	MFS transporter
RA	600,244	T→G	8.2%	V24G (GTC→GGC)	nrdR →	DNA‑binding transcriptional repressor NrdR
RA	618,312	C→T	10.1%	G86E (GGG→GAG)	PP_0532 ←	hypothetical protein
RA	630,319	G→A	7.7%	S458S (AGC→AGT)	PP_0544 ←	ethanolamine transporter
RA	632,035	C→G	13.5%	G469A (GGC→GCC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,038	A→C	13.0%	F468C (TTC→TGC)	aldB‑I ←	aldehyde dehydrogenase
RA	632,040	C→T	13.1%	A467A (GCG→GCA)	aldB‑I ←	aldehyde dehydrogenase
RA	632,043	G→C	14.0%	A466A (GCC→GCG)	aldB‑I ←	aldehyde dehydrogenase
RA	632,046	A→G	13.2%	H465H (CAT→CAC) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,048	G→T	13.5%	H465N (CAT→AAT) ‡	aldB‑I ←	aldehyde dehydrogenase
RA	632,051	C→G	13.5%	A464P (GCG→CCG)	aldB‑I ←	aldehyde dehydrogenase
RA	646,602	C→T	8.8%	A75A (GCC→GCT)	acoR →	acetoin catabolism regulatory protein
RA	646,603	A→G	8.8%	S76G (AGC→GGC)	acoR →	acetoin catabolism regulatory protein
RA	648,287	A→C	16.9%	intergenic (+56/+35)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,289	A→T	16.9%	intergenic (+58/+33)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,291	G→T	14.5%	intergenic (+60/+31)	acoR → / ← accC	acetoin catabolism regulatory protein/acetyl‑CoA carboxylase biotin carboxylase subunit
RA	672,002	C→T	10.5%	L353L (CTG→TTG)	PP_0573 →	hypothetical protein
RA	680,138	G→A	9.7%	C342Y (TGC→TAC)	PP_0582 →	thiolase family protein
RA	684,841	Δ1 bp	10.8%	coding (1406/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	684,846:1	+A	10.9%	coding (1401/2400 nt)	cadA‑II ←	cadmium translocating P‑type ATPase
RA	693,590	C→G	10.9%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	697,214	T→C	7.8%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,225	C→G	9.3%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	9.3%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,239	G→A	8.7%	intergenic (+166/‑585)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,722	A→G	44.3%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	702,764	T→G	13.7%	intergenic (+12/‑120)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,765	A→T	13.7%	intergenic (+13/‑119)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	702,766	C→A	13.4%	intergenic (+14/‑118)	PP_23SD → / → PP_5SD	23S ribosomal RNA/5S ribosomal RNA
RA	706,842	C→G	9.1%	intergenic (+18/+228)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,843	A→C	8.5%	intergenic (+19/+227)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,844	A→T	9.0%	intergenic (+20/+226)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,846	C→G	8.5%	intergenic (+22/+224)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	706,855	G→A	11.7%	intergenic (+31/+215)	PP_0599 → / ← rpsT	paraquat‑inducible protein B/30S ribosomal protein S20
RA	714,998	T→A	7.0%	intergenic (+64/+13)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,009:1	+T	11.3%	intergenic (+75/+2)	ispH → / ← PP_0607	4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase/type IV pili biogenesis protein FimT
RA	715,016	Δ1 bp	12.5%	coding (478/483 nt)	PP_0607 ←	type IV pili biogenesis protein FimT
RA	743,430	G→A	8.9%	intergenic (+109/+165)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,432	A→C	9.1%	intergenic (+111/+163)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,439	T→G	9.0%	intergenic (+118/+156)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,440	T→A	8.9%	intergenic (+119/+155)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,441	C→A	8.6%	intergenic (+120/+154)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,448	G→T	10.4%	intergenic (+127/+147)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,450	T→C	10.8%	intergenic (+129/+145)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	743,460	A→G	9.6%	intergenic (+139/+135)	PP_0635 → / ← PP_0636	group II intron‑encoding maturase/cold shock DNA‑binding domain‑containing protein
RA	793,656	T→C	5.8%	intergenic (‑21/‑203)	PP_0679 ← / → PP_0680	hypothetical protein/ATP‑dependent protease‑like protein
RA	805,137	G→T	5.3%	S731S (TCC→TCA) ‡	PP_0693 ←	hypothetical protein
RA	805,138	G→C	5.3%	S731C (TCC→TGC) ‡	PP_0693 ←	hypothetical protein
RA	805,139	A→C	5.3%	S731A (TCC→GCC) ‡	PP_0693 ←	hypothetical protein
RA	855,864	A→G	8.0%	T239A (ACC→GCC) ‡	murI →	glutamate racemase
RA	855,865	C→T	8.0%	T239I (ACC→ATC) ‡	murI →	glutamate racemase
RA	855,874	A→G	9.6%	D242G (GAC→GGC) ‡	murI →	glutamate racemase
RA	855,875	C→T	10.0%	D242D (GAC→GAT) ‡	murI →	glutamate racemase
RA	857,638	C→A	7.4%	A396S (GCG→TCG)	phr ←	deoxyribodipyrimidine photolyase
RA	857,639	G→C	7.2%	D395E (GAC→GAG) ‡	phr ←	deoxyribodipyrimidine photolyase
RA	857,640	T→G	7.3%	D395A (GAC→GCC) ‡	phr ←	deoxyribodipyrimidine photolyase
RA	868,379	C→T	8.1%	P403P (CCG→CCA)	mqo‑I ←	malate:quinone oxidoreductase
RA	871,871	A→G	9.4%	intergenic (+17/+19)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	871,872	A→T	9.4%	intergenic (+18/+18)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	871,873	C→T	9.0%	intergenic (+19/+17)	PP_0755 → / ← PP_0756	hypothetical protein/hypothetical protein
RA	886,941	C→T	6.9%	intergenic (+134/‑26)	PP_0767 → / → PP_0768	LuxR family transcriptional regulator/TPR domain‑containing response regulator
RA	901,418	G→A	12.9%	intergenic (‑137/‑194)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	901,419	A→T	12.7%	intergenic (‑138/‑193)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	901,420	T→C	12.7%	intergenic (‑139/‑192)	cysZ ← / → trxB	sulfate transport protein CysZ/thioredoxin reductase
RA	906,437	G→A	7.5%	A150T (GCC→ACC)	ampD →	N‑acetyl‑anhydromuramyl‑L‑alanine‑amidase
RA	914,631	G→C	7.7%	A448P (GCC→CCC) ‡	fruA →	PTS fructose transporter subunit IIBC
RA	914,633	C→G	9.3%	A448A (GCC→GCG) ‡	fruA →	PTS fructose transporter subunit IIBC
RA	914,636	C→G	9.6%	A449A (GCC→GCG)	fruA →	PTS fructose transporter subunit IIBC
RA	914,638	G→C	11.1%	G450A (GGC→GCC)	fruA →	PTS fructose transporter subunit IIBC
RA	914,644:1	+C	9.8%	coding (1355/1743 nt)	fruA →	PTS fructose transporter subunit IIBC
RA	919,672	G→C	8.7%	intergenic (‑143/+48)	PP_5458 ← / ← PP_0800	hypothetical protein/hypothetical protein
RA	924,319	T→C	7.9%	T292A (ACG→GCG)	PP_0804 ←	protein secretion ABC transporter permease/ATP‑binding protein
RA	931,227	C→G	8.4%	E4799Q (GAG→CAG)	PP_0806 ←	surface adhesion protein
RA	931,229	C→G	6.9%	G4798A (GGC→GCC)	PP_0806 ←	surface adhesion protein
RA	931,231	C→G	6.9%	L4797L (CTG→CTC)	PP_0806 ←	surface adhesion protein
RA	932,603	A→G	6.3%	V4340A (GTG→GCG) ‡	PP_0806 ←	surface adhesion protein
RA	932,604	C→T	6.5%	V4340M (GTG→ATG) ‡	PP_0806 ←	surface adhesion protein
RA	932,607	T→C	6.6%	N4339D (AAC→GAC)	PP_0806 ←	surface adhesion protein
RA	942,008	A→C	5.0%	F1205C (TTC→TGC)	PP_0806 ←	surface adhesion protein
RA	955,149	A→G	22.6%	intergenic (+103/‑210)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,151	G→A	25.0%	intergenic (+105/‑208)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,152	T→A	24.7%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,153	T→C	25.0%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	C→T	30.1%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	971,677	C→T	13.5%	intergenic (+32/‑32)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,678	A→T	13.3%	intergenic (+33/‑31)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,679	A→G	13.7%	intergenic (+34/‑30)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	983,581	T→A	8.2%	intergenic (+39/‑50)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,584	A→T	8.2%	intergenic (+42/‑47)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	983,587	T→A	8.0%	intergenic (+45/‑44)	iscX → / → ndk	cysteine desulfurase activity regulator/nucleoside diphosphate kinase
RA	1,001,193	A→T	7.9%	Q57L (CAG→CTG)	PP_0863 →	hypothetical protein
RA	1,001,196	A→T	7.9%	Q58L (CAG→CTG)	PP_0863 →	hypothetical protein
RA	1,004,350	C→G	7.7%	A125A (GCC→GCG)	PP_0866 →	transmembrane sensor
RA	1,004,351	T→C	7.4%	F126L (TTC→CTC)	PP_0866 →	transmembrane sensor
RA	1,004,355	A→T	7.3%	N127I (AAT→ATT)	PP_0866 →	transmembrane sensor
RA	1,004,360	C→G	7.0%	R129G (CGC→GGC)	PP_0866 →	transmembrane sensor
RA	1,030,799	A→T	8.3%	E286V (GAG→GTG) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,800	G→C	8.4%	E286D (GAG→GAC) ‡	PP_0887 →	sensor histidine kinase
RA	1,030,801	A→T	8.6%	T287S (ACT→TCT)	PP_0887 →	sensor histidine kinase
RA	1,030,808	Δ1 bp	8.7%	coding (866/1353 nt)	PP_0887 →	sensor histidine kinase
RA	1,031,919	T→A	9.4%	L5M (TTG→ATG) ‡	PP_0889 →	hypothetical protein
RA	1,031,920	T→A	9.3%	L5* (TTG→TAG) ‡	PP_0889 →	hypothetical protein
RA	1,035,095	G→A	8.7%	V378I (GTC→ATC)	PP_0892 →	phospholipase family protein
RA	1,036,818	C→T	9.2%	R175C (CGC→TGC)	PP_0895 →	hypothetical protein
RA	1,037,951	T→C	5.9%	N482D (AAC→GAC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,037,954	T→C	6.0%	S481G (AGC→GGC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,037,957	C→G	5.9%	D480H (GAC→CAC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,037,958	C→G	5.9%	V479V (GTG→GTC)	PP_0897 ←	class 1 fumarate hydratase
RA	1,045,258	T→C	10.2%	intergenic (+31/+75)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,262	G→A	8.1%	intergenic (+35/+71)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,265	T→C	8.3%	intergenic (+38/+68)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,045,269	G→A	8.5%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter
RA	1,049,179	T→G	6.2%	K141Q (AAG→CAG)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,049,184	A→T	6.2%	L139Q (CTG→CAG)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,049,189	C→A	6.2%	L137L (CTG→CTT)	PP_0907 ←	RND transporter membrane fusion protein‑like protein
RA	1,051,604	T→C	6.6%	K106E (AAA→GAA)	PP_0909 ←	hypothetical protein
RA	1,068,945	T→A	6.5%	I36N (ATT→AAT)	aroP‑I →	aromatic amino acid transport protein
RA	1,070,147	G→A	7.0%	A437T (GCT→ACT)	aroP‑I →	aromatic amino acid transport protein
RA	1,070,246:1	+GA	100%	intergenic (+46/+96)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,090,835	G→C	7.1%	D97H (GAT→CAT) ‡	PP_0945 →	hypothetical protein
RA	1,090,837	T→C	7.0%	D97D (GAT→GAC) ‡	PP_0945 →	hypothetical protein
RA	1,098,297	G→A	9.7%	G94G (GGC→GGT)	kdsC ←	3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase
RA	1,100,207	G→C	11.1%	V132L (GTG→CTG) ‡	mlaF →	ABC transporter ATP‑binding protein
RA	1,100,208	T→A	10.8%	V132E (GTG→GAG) ‡	mlaF →	ABC transporter ATP‑binding protein
RA	1,100,209	G→C	11.5%	V132V (GTG→GTC) ‡	mlaF →	ABC transporter ATP‑binding protein
RA	1,101,790	A→T	6.9%	K124M (AAG→ATG)	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,798	G→T	12.5%	A127S (GCA→TCA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,799	C→G	12.7%	A127G (GCA→GGA) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,800	A→C	12.5%	A127A (GCA→GCC) ‡	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,101,808	A→T	8.1%	H130L (CAT→CTT)	mlaD →	phospholipid ABC transporter substrate‑binding protein
RA	1,110,924	T→A	7.2%	V317D (GTC→GAC)	PP_0970 →	cyanate MFS transporter
RA	1,114,869	T→C	9.4%	intergenic (‑63/+116)	rlmF ← / ← valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
RA	1,121,444	C→T	9.4%	V295V (GTC→GTT)	PP_0982 →	YjgP/YjgQ family permease
RA	1,121,445	A→G	9.4%	N296D (AAC→GAC)	PP_0982 →	YjgP/YjgQ family permease
RA	1,121,453	C→A	8.5%	R298R (CGC→CGA)	PP_0982 →	YjgP/YjgQ family permease
RA	1,122,758	T→C	18.4%	intergenic (+29/+118)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,759	C→T	18.7%	intergenic (+30/+117)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,760	A→G	18.4%	intergenic (+31/+116)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,122,761	G→A	19.3%	intergenic (+32/+115)	PP_0983 → / ← PP_0984	membrane protein/membrane protein
RA	1,126,645:1	+C	100%	intergenic (‑99/+50)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,140,505	G→A	7.5%	L155L (CTG→TTG)	arcA ←	arginine deiminase
RA	1,145,433	C→T	15.2%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,440	G→A	13.6%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,441	T→C	13.7%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,155,067	G→A	7.0%	V75V (GTG→GTA)	PP_1013 →	sensor histidine kinase
RA	1,155,069	C→G	6.7%	A76G (GCC→GGC)	PP_1013 →	sensor histidine kinase
RA	1,155,071	T→C	6.7%	Y77H (TAC→CAC)	PP_1013 →	sensor histidine kinase
RA	1,158,920	G→A	6.3%	M351I (ATG→ATA)	gtsA →	mannose/glucose ABC transporter substrate‑binding protein
RA	1,171,338	C→T	8.5%	R111H (CGC→CAC)	PP_1026 ←	M23/M37 family peptidase
RA	1,178,808	G→A	8.5%	A657V (GCC→GTC)	PP_1033 ←	sulfatase domain‑containing protein
RA	1,191,971	T→A	8.6%	N560I (AAC→ATC)	upxB ←	phosphatase
RA	1,205,130	T→C	6.3%	I32V (ATC→GTC)	PP_1056 ←	iron‑chelator utilization protein
RA	1,205,133	G→C	6.5%	R31G (CGG→GGG)	PP_1056 ←	iron‑chelator utilization protein
RA	1,205,640	G→A	7.7%	P41L (CCC→CTC)	PP_1057 ←	PadR family transcriptional regulator
RA	1,205,643	T→A	7.7%	Q40L (CAG→CTG)	PP_1057 ←	PadR family transcriptional regulator
RA	1,205,646	T→C	7.7%	E39G (GAG→GGG)	PP_1057 ←	PadR family transcriptional regulator
RA	1,207,675	T→C	6.6%	Q442Q (CAA→CAG)	PP_1058 ←	hypothetical protein
RA	1,210,131	T→A	6.4%	I247N (ATC→AAC)	ytnA →	amino acid permease YtnA
RA	1,234,328	T→A	7.0%	I320F (ATC→TTC)	glpK ←	glycerol kinase
RA	1,234,331	T→G	7.4%	K319Q (AAG→CAG)	glpK ←	glycerol kinase
RA	1,234,335	T→A	7.8%	E317D (GAA→GAT)	glpK ←	glycerol kinase
RA	1,238,748	A→G	6.9%	V93A (GTG→GCG)	argF ←	ornithine carbamoyltransferase
RA	1,238,750	G→C	6.9%	I92M (ATC→ATG)	argF ←	ornithine carbamoyltransferase
RA	1,238,753	G→C	7.0%	A91A (GCC→GCG)	argF ←	ornithine carbamoyltransferase
RA	1,245,330	G→C	12.5%	A66A (GCC→GCG)	pyrC ←	dihydroorotase
RA	1,245,334	G→C	10.7%	P65R (CCG→CGG)	pyrC ←	dihydroorotase
RA	1,245,338	G→C	10.5%	R64G (CGC→GGC)	pyrC ←	dihydroorotase
RA	1,249,749	A→T	6.5%	intergenic (+22/+49)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,751	C→G	7.4%	intergenic (+24/+47)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,249,753	A→T	7.7%	intergenic (+26/+45)	bvgA → / ← PP_1091	virulence factors transcription regulator BvgA/hypothetical protein
RA	1,253,429	G→C	10.0%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,431	A→T	9.5%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,433	G→C	9.5%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,266,910	G→C	8.6%	R360G (CGC→GGC)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,266,914	G→C	8.9%	R358R (CGC→CGG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,266,917	G→C	8.9%	A357A (GCC→GCG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,266,921	G→C	8.9%	P356R (CCG→CGG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,267,257	A→G	5.5%	L244P (CTG→CCG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,267,264	G→C	5.6%	P242A (CCA→GCA)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,273,747	T→A	6.3%	R113R (CGA→CGT)	PP_1115 ←	lipoprotein
RA	1,274,851	T→A	5.9%	intergenic (‑48/+264)	PP_5462 ← / ← PP_5463	hypothetical protein/hypothetical protein
RA	1,280,163	T→C	7.1%	intergenic (‑168/‑439)	PP_1117 ← / → PP_5742	hypothetical protein/membrane protein
RA	1,294,114	C→T	9.0%	intergenic (+15/+25)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,115	A→T	9.1%	intergenic (+16/+24)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,294,116	A→G	9.1%	intergenic (+17/+23)	pdxH → / ← PP_1130	pyridoxine/pyridoxamine 5'‑phosphate oxidase/hypothetical protein
RA	1,327,121	C→T	57.4%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,336,638	C→A	6.1%	P4Q (CCG→CAG)	gstA →	glutathione S‑transferase GstA
RA	1,350,501	T→A	10.0%	K11N (AAA→AAT) ‡	PP_1176 ←	hypothetical protein
RA	1,350,502	T→A	9.4%	K11I (AAA→ATA) ‡	PP_1176 ←	hypothetical protein
RA	1,366,655	G→C	7.4%	L15L (CTC→CTG) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,656	A→G	7.5%	L15P (CTC→CCC) ‡	PP_1191 ←	S4 domain‑containing protein
RA	1,366,966	G→A	9.1%	A114A (GCC→GCT)	PP_1192 ←	GNAT family acetyltransferase
RA	1,368,196	A→G	7.9%	intergenic (+25/‑158)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,197	G→T	7.9%	intergenic (+26/‑157)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,199	G→C	8.0%	intergenic (+28/‑155)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,201	A→C	7.9%	intergenic (+30/‑153)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,368,202	C→T	9.4%	intergenic (+31/‑152)	PP_1193 → / → PP_1194	membrane protein/hypothetical protein
RA	1,376,321	A→T	12.6%	intergenic (+30/+19)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,322	G→C	13.0%	intergenic (+31/+18)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,376,323	A→T	13.0%	intergenic (+32/+17)	kup → / ← PP_1201	potassium transport system protein Kup/hypothetical protein
RA	1,380,746	C→A	6.7%	intergenic (‑134/+1)	PP_t67 ← / ← PP_t66	tRNA‑Met/tRNA‑Met
RA	1,383,254	A→T	9.5%	L16Q (CTG→CAG)	PP_1204 ←	lipoprotein
RA	1,384,505	G→T	7.8%	R176S (CGC→AGC)	proS ←	proline‑‑tRNA ligase
RA	1,386,621	T→G	7.0%	intergenic (‑165/‑526)	oprD ← / → PP_1207	basic amino acid specific porin OprD/hypothetical protein
RA	1,387,265	G→T	6.1%	R40L (CGC→CTC)	PP_1207 →	hypothetical protein
RA	1,387,274	T→C	6.0%	I43T (ATC→ACC)	PP_1207 →	hypothetical protein
RA	1,389,946	C→G	5.1%	A23G (GCC→GGC)	PP_1212 →	hypothetical protein
RA	1,389,951	C→G	5.1%	P25A (CCG→GCG)	PP_1212 →	hypothetical protein
RA	1,390,996	G→C	8.5%	G268A (GGC→GCC)	aspS →	aspartate‑‑tRNA ligase
RA	1,403,590	G→A	21.8%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,591	T→C	23.3%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,418,249	G→T	7.4%	L236L (CTG→CTT)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,418,251	A→C	6.4%	*237S (TAA→TCA)	purC →	phosphoribosylaminoimidazole‑succinocarboxamide synthase
RA	1,419,548:1	+C	100%	intergenic (‑37/+99)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein
RA	1,428,975	A→G	8.6%	Y359C (TAC→TGC) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,976	C→G	8.6%	Y359* (TAC→TAG) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,977	C→G	8.6%	P360A (CCA→GCA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,428,978	C→T	8.7%	P360L (CCA→CTA) ‡	mqo‑II →	malate:quinone oxidoreductase
RA	1,447,026	A→T	8.3%	H375L (CAC→CTC)	PP_1264 →	fusaric acid resistance protein
RA	1,447,029	A→T	7.7%	K376M (AAG→ATG)	PP_1264 →	fusaric acid resistance protein
RA	1,447,032	A→T	7.9%	H377L (CAT→CTT)	PP_1264 →	fusaric acid resistance protein
RA	1,447,035	A→T	7.9%	E378V (GAG→GTG)	PP_1264 →	fusaric acid resistance protein
RA	1,456,488	C→T	7.9%	M165I (ATG→ATA)	PP_1274 ←	short‑chain dehydrogenase/reductase family oxidoreductase
RA	1,470,044	A→T	9.4%	C33* (TGT→TGA) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,470,045	C→G	8.1%	C33S (TGT→TCT) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,470,046	A→T	8.4%	C33S (TGT→AGT) ‡	algK ←	alginate biosynthesis protein AlgK
RA	1,470,735	G→A	10.0%	H188H (CAC→CAT)	alg44 ←	alginate biosynthesis protein Alg44
RA	1,474,995	T→G	14.0%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,474,996	C→A	14.0%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,483,877	T→G	7.3%	intergenic (+22/‑46)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,483,878	C→G	7.0%	intergenic (+23/‑45)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,483,879	C→A	8.7%	intergenic (+24/‑44)	yhdW → / → yhdX	amino acid ABC transporter‑binding protein YhdW/amino acid ABC transporter permease
RA	1,486,293	G→T	8.0%	G25V (GGC→GTC)	yhdZ →	amino acid ABC transporter ATP‑binding protein
RA	1,488,058	T→A	6.6%	K89* (AAG→TAG)	degS ←	serine endoprotease DegS
RA	1,488,066	T→A	6.4%	Y86F (TAC→TTC)	degS ←	serine endoprotease DegS
RA	1,496,815	T→G	6.2%	intergenic (+47/+25)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,496,816	T→C	6.7%	intergenic (+48/+24)	mdeA → / ← PP_1309	methionine gamma‑lyase/hypothetical protein
RA	1,499,480	2 bp→AC	100%	intergenic (+57/‑106)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,498	1 bp→CG	100%	intergenic (+75/‑89)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,499,506:1	+C	100%	intergenic (+83/‑81)	trpS → / → zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
RA	1,504,067	T→A	8.2%	intergenic (+34/‑229)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,068	T→A	8.2%	intergenic (+35/‑228)	rpsI → / → petA	30S ribosomal protein S9/ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,584	T→G	6.7%	S97A (TCC→GCC)	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,587	A→T	6.1%	K98* (AAG→TAG)	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,504,591	C→A	6.0%	A99D (GCC→GAC)	petA →	ubiquinol‑cytochrome c reductase iron‑sulfur subunit
RA	1,505,538	G→T	15.7%	G217V (GGC→GTC)	petB →	cytochrome b
RA	1,505,541	T→A	12.3%	V218D (GTC→GAC)	petB →	cytochrome b
RA	1,505,544	A→C	11.5%	D219A (GAC→GCC)	petB →	cytochrome b
RA	1,506,923	A→G	13.3%	intergenic (+44/‑73)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,927	G→A	17.6%	intergenic (+48/‑69)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,930	T→C	17.6%	intergenic (+51/‑66)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,506,934	C→T	15.9%	intergenic (+55/‑62)	petC → / → sspA	ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit/stringent starvation protein A
RA	1,508,080	A→C	5.9%	intergenic (+19/+43)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,508,081	T→C	5.9%	intergenic (+20/+42)	sspB → / ← PP_1322	ClpXP protease specificity‑enhancing factor/lipoprotein
RA	1,509,659	G→T	6.7%	R32S (CGC→AGC)	PP_1324 ←	endonuclease
RA	1,509,660	T→G	6.8%	A31A (GCA→GCC)	PP_1324 ←	endonuclease
RA	1,509,663	C→A	7.0%	L30L (CTG→CTT) ‡	PP_1324 ←	endonuclease
RA	1,509,664	A→C	7.0%	L30R (CTG→CGG) ‡	PP_1324 ←	endonuclease
RA	1,528,300	G→C	6.7%	G214A (GGC→GCC)	ftsA →	cell division protein FtsA
RA	1,528,302	A→G	6.5%	T215A (ACC→GCC)	ftsA →	cell division protein FtsA
RA	1,531,495	C→T	8.3%	W127* (TGG→TGA)	PP_1344 ←	hypothetical protein
RA	1,544,492	G→C	50.0%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,494	C→G	50.1%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,499	C→G	49.8%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,501	G→C	50.0%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,504	T→G	46.7%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,555,388	A→C	11.0%	intergenic (+26/+48)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,389	T→A	11.8%	intergenic (+27/+47)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,555,390	G→T	11.8%	intergenic (+28/+46)	sbcB → / ← PP_1366	exodeoxyribonuclease I/transcriptional regulator MvaT
RA	1,556,982	T→G	8.8%	intergenic (+34/‑59)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,556,983	G→C	8.8%	intergenic (+35/‑58)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,556,984	C→A	8.9%	intergenic (+36/‑57)	purU‑II → / → PP_5468	formyltetrahydrofolate hydrolase/hypothetical protein
RA	1,563,828	A→C	8.0%	intergenic (+94/+28)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,564,931	A→T	7.8%	L133Q (CTG→CAG)	pitB ←	phosphate transporter
RA	1,567,255	A→T	12.6%	intergenic (+59/‑262)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,567,257	A→T	12.3%	intergenic (+61/‑260)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,567,259	A→T	12.7%	intergenic (+63/‑258)	pcaR → / → pcaK	pca regulon transcriptional regulator/4‑hydroxybenzoate transporter
RA	1,575,201	T→A	7.5%	intergenic (‑187/+23)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,575,211	G→T	7.4%	intergenic (‑197/+13)	pcaP ← / ← galP‑II	porin/porin‑like protein
RA	1,582,773	C→A	8.7%	intergenic (‑219/‑39)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,582,780	T→A	8.9%	intergenic (‑226/‑32)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,582,787	T→G	9.5%	intergenic (‑233/‑25)	ttgA ← / → ttgR	efflux pump periplasmic linker TtgA/HTH‑type transcriptional regulator TtgR
RA	1,584,487	A→T	5.7%	L176Q (CTG→CAG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,584,491	C→G	5.6%	G175R (GGG→CGG)	PP_1388 ←	EmrB/QacA family drug resistance transporter
RA	1,589,458	A→T	6.9%	M83L (ATG→TTG)	PP_1394 →	acetolactate synthase large subunit
RA	1,594,061	T→C	6.9%	intergenic (‑259/+42)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,066	G→T	7.8%	intergenic (‑264/+37)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,067	C→G	8.3%	intergenic (‑265/+36)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,068	A→C	7.0%	intergenic (‑266/+35)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,594,073	G→A	7.2%	intergenic (‑271/+30)	PP_1399 ← / ← kgtP	hypothetical protein/alpha‑ketoglutarate permease
RA	1,598,492	G→A	8.9%	A90A (GCC→GCT) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,493	G→A	8.9%	A90V (GCC→GTC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,496	T→C	8.5%	N89S (AAC→AGC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,497	T→C	8.5%	N89D (AAC→GAC) ‡	dctB ←	C4‑dicarboxylate transport sensor protein
RA	1,598,828	A→G	8.2%	intergenic (‑67/+64)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,831	C→G	8.0%	intergenic (‑70/+61)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,832	T→C	8.0%	intergenic (‑71/+60)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,598,834	C→G	7.4%	intergenic (‑73/+58)	dctB ← / ← bglX	C4‑dicarboxylate transport sensor protein/beta‑D‑glucoside glucohydrolase
RA	1,602,520	C→T	7.9%	Q123* (CAG→TAG) ‡	PP_5469 →	SAM‑dependent methyltransferase
RA	1,602,521	A→G	7.4%	Q123R (CAG→CGG) ‡	PP_5469 →	SAM‑dependent methyltransferase
RA	1,629,453	G→T	5.3%	Q321H (CAG→CAT)	mucB →	sigma factor AlgU regulator MucB
RA	1,629,456	A→C	5.3%	*322Y (TAA→TAC)	mucB →	sigma factor AlgU regulator MucB
RA	1,637,325	A→T	9.3%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,326	A→T	8.8%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,648,949	G→A	15.1%	intergenic (‑228/+68)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,952	C→A	14.1%	intergenic (‑231/+65)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,953	C→T	14.4%	intergenic (‑232/+64)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,957	T→A	13.3%	intergenic (‑236/+60)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,959	C→G	13.9%	intergenic (‑238/+58)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,960	C→G	14.1%	intergenic (‑239/+57)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,962	T→A	13.0%	intergenic (‑241/+55)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,966	A→G	13.1%	intergenic (‑245/+51)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,967	T→G	13.0%	intergenic (‑246/+50)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,648,970	T→C	12.0%	intergenic (‑249/+47)	oprB‑II ← / ← PP_1446	carbohydrate‑selective porin/TonB‑dependent receptor
RA	1,652,964	G→A	5.5%	H1269Y (CAT→TAT)	PP_1449 ←	hypothetical protein
RA	1,660,083	C→A	9.1%	P65T (CCG→ACG)	nudL →	NUDIX hydrolase
RA	1,667,902	A→G	7.8%	S302G (AGC→GGC)	ffh →	signal recognition particle GTPase subunit
RA	1,667,908	A→C	8.7%	I304L (ATC→CTC)	ffh →	signal recognition particle GTPase subunit
RA	1,667,913	G→T	9.2%	E305D (GAG→GAT)	ffh →	signal recognition particle GTPase subunit
RA	1,667,919	C→T	9.3%	A307A (GCC→GCT)	ffh →	signal recognition particle GTPase subunit
RA	1,671,162	A→C	7.2%	V576G (GTA→GGA)	PP_1467 ←	NhaP‑type Na+(K+)/H+ antiporter
RA	1,671,167	G→T	7.5%	V574V (GTC→GTA)	PP_1467 ←	NhaP‑type Na+(K+)/H+ antiporter
RA	1,677,629	A→G	10.1%	intergenic (+22/‑109)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,677,630	G→C	10.2%	intergenic (+23/‑108)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,677,631	C→T	10.1%	intergenic (+24/‑107)	thrC → / → PP_5471	threonine synthase/two‑component system response regulator
RA	1,683,248	C→G	8.1%	intergenic (+57/‑174)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,683,251	C→G	8.2%	intergenic (+60/‑171)	recJ → / → PP_1478	ssDNA‑specific exonuclease RecJ/xenobiotic reductase
RA	1,691,772	T→C	8.0%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,773	C→G	8.0%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,783	C→A	9.1%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,786	T→G	8.6%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,796	C→G	7.7%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,703,221	T→C	10.8%	intergenic (+70/‑97)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,248	A→G	29.4%	intergenic (+97/‑70)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,250	G→C	30.6%	intergenic (+99/‑68)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,703,252	C→T	31.6%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,707,227	G→C	15.0%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,230	G→C	15.1%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,951	T→A	12.7%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,952	T→A	12.7%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,725,779	C→G	9.5%	L795L (CTG→CTC)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,725,784	C→G	9.3%	E794Q (GAG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,734,866	C→A	9.3%	intergenic (+68/+45)	tcdA → / ← PP_1528	tRNA cyclic N6‑threonylcarbamoyladenosine(37) synthase TcdA/hypothetical protein
RA	1,734,870	C→T	9.1%	intergenic (+72/+41)	tcdA → / ← PP_1528	tRNA cyclic N6‑threonylcarbamoyladenosine(37) synthase TcdA/hypothetical protein
RA	1,748,902	A→T	5.8%	intergenic (‑235/‑97)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,903	A→G	5.8%	intergenic (‑236/‑96)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,914	Δ1 bp	6.3%	intergenic (‑247/‑85)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,922	T→A	5.6%	intergenic (‑255/‑77)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,925	T→A	5.9%	intergenic (‑258/‑74)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,927:1	+C	6.1%	intergenic (‑260/‑72)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,932	T→A	6.0%	intergenic (‑265/‑67)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,748,944	A→T	6.4%	intergenic (‑277/‑55)	PP_1548 ← / → PP_5744	hypothetical protein/hypothetical protein
RA	1,771,705	A→G	8.9%	D818G (GAT→GGT)	PP_1579 →	hypothetical protein
RA	1,784,031	C→G	6.3%	A16P (GCG→CCG)	glnD ←	uridylyltransferase
RA	1,784,032	C→G	6.3%	Q15H (CAG→CAC) ‡	glnD ←	uridylyltransferase
RA	1,784,033	T→C	6.5%	Q15R (CAG→CGG) ‡	glnD ←	uridylyltransferase
RA	1,786,022	T→A	9.9%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,023	T→A	9.8%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,024	T→A	9.9%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,944	A→G	8.3%	T259A (ACC→GCC)	tsf →	elongation factor Ts
RA	1,786,952	C→T	8.3%	F261F (TTC→TTT)	tsf →	elongation factor Ts
RA	1,786,953	A→G	8.3%	K262E (AAA→GAA)	tsf →	elongation factor Ts
RA	1,786,961	C→T	8.0%	G264G (GGC→GGT)	tsf →	elongation factor Ts
RA	1,812,302	G→C	11.3%	A39G (GCC→GGC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,303	C→A	10.4%	A39S (GCC→TCC) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,308	T→G	9.4%	Q37P (CAG→CCG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,812,309	G→C	9.6%	Q37E (CAG→GAG) ‡	PP_1615 ←	LysR family transcriptional regulator
RA	1,835,835	A→T	13.7%	L152* (TTG→TAG) ‡	yohC ←	inner membrane protein
RA	1,835,836	A→T	13.6%	L152M (TTG→ATG) ‡	yohC ←	inner membrane protein
RA	1,843,996	T→G	100%	E266D (GAA→GAC)	gacS ←	sensor protein GacS
RA	1,853,207	G→A	7.2%	intergenic (+52/‑72)	relA → / → mazG	ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase
RA	1,853,211	G→C	7.5%	intergenic (+56/‑68)	relA → / → mazG	ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase
RA	1,853,215	T→C	7.4%	intergenic (+60/‑64)	relA → / → mazG	ATP:GTP 3'‑pyrophosphotransferase/modified nucleoside triphosphate pyrophosphohydrolase
RA	1,859,527	A→C	6.6%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,529	T→A	5.9%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,531	G→T	6.1%	intergenic (‑123/+33)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,860,700:1	+C	8.3%	coding (237/654 nt)	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,706	C→T	8.3%	M77I (ATG→ATA) ‡	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,708	T→A	9.6%	M77L (ATG→TTG) ‡	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,860,710	A→G	8.4%	L76P (CTA→CCA)	purN ←	phosphoribosylglycinamide formyltransferase
RA	1,871,686	G→T	6.3%	Q320H (CAG→CAT)	cobC →	adenosylcobinamide‑phosphate synthase subunit beta
RA	1,873,456	A→T	6.7%	E95D (GAA→GAT)	cobP →	adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase
RA	1,892,225	C→A	6.0%	P156Q (CCG→CAG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,892,228	T→G	6.3%	L157R (CTG→CGG)	PP_1697 →	transcriptional regulator, GntR family
RA	1,899,807	A→T	7.9%	K120* (AAG→TAG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,899,808	A→T	7.9%	K120M (AAG→ATG) ‡	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,905,625	A→T	6.7%	E627V (GAG→GTG)	nirB →	nitrite reductase large subunit
RA	1,932,638:1	+C	100%	intergenic (‑105/+45)	rluA ← / ← minE	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor
RA	1,939,277	T→C	8.5%	L15P (CTG→CCG)	PP_1739 →	membrane protein
RA	1,942,366	T→A	12.9%	intergenic (+44/‑161)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,942,369	T→C	13.0%	intergenic (+47/‑158)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,942,370	A→G	13.2%	intergenic (+48/‑157)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,942,371	C→T	13.2%	intergenic (+49/‑156)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,942,372	G→A	13.5%	intergenic (+50/‑155)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,942,375	T→A	13.6%	intergenic (+53/‑152)	betX → / → yjcH	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX/inner membrane protein
RA	1,946,536	T→A	7.3%	intergenic (‑65/+19)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,537	T→A	7.3%	intergenic (‑66/+18)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,538	T→A	7.4%	intergenic (‑67/+17)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,946,541	A→G	7.4%	intergenic (‑70/+14)	PP_1747 ← / ← PP_1748	hypothetical protein/hypothetical protein
RA	1,948,173	C→G	9.5%	R494R (CGG→CGC)	PP_1749 ←	acetyltransferase
RA	1,955,209	T→A	11.3%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,210	T→A	11.3%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,962,593	C→A	7.6%	L286M (CTG→ATG)	PP_1760 →	ABC transporter ATP‑binding protein
RA	1,966,349	T→A	8.9%	I2N (ATT→AAT)	PP_1762 →	hypothetical protein
RA	1,973,871	A→T	8.2%	intergenic (+28/‑120)	gyrA → / → serC	DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase
RA	1,973,872	A→T	8.2%	intergenic (+29/‑119)	gyrA → / → serC	DNA gyrase subunit A/3‑phosphoserine/phosphohydroxythreonine aminotransferase
RA	1,981,092	T→G	7.8%	intergenic (+31/‑269)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,981,093	C→A	7.9%	intergenic (+32/‑268)	rpsA → / → ihfB	30S ribosomal protein S1/integration host factor subunit beta
RA	1,993,602	G→T	20.7%	intergenic (+40/+58)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,603	C→G	24.0%	intergenic (+41/+57)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,993,604	A→C	19.6%	intergenic (+42/+56)	PP_1780 → / ← PP_1781	mannosyltransferase/acyltransferase
RA	1,997,790	G→A	8.0%	A198V (GCA→GTA)	rfbD ←	dTDP‑4‑dehydrorhamnose reductase
RA	1,998,329:1	+C	8.3%	coding (54/903 nt)	rfbD ←	dTDP‑4‑dehydrorhamnose reductase
RA	2,021,487	G→C	9.5%	intergenic (+24/‑415)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,488	G→C	9.5%	intergenic (+25/‑414)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,021,489	G→C	9.5%	intergenic (+26/‑413)	PP_1798 → / → gmd	outer membrane efflux protein/GDP‑mannose 4,6‑dehydratase
RA	2,028,080	T→C	7.3%	A290A (GCT→GCC)	wbpL →	glycosyl transferase WbpL
RA	2,028,639:1	+C	11.3%	coding (379/2067 nt)	wbpM →	polysaccharide biosynthesis protein
RA	2,028,645	T→C	11.8%	W129R (TGG→CGG) ‡	wbpM →	polysaccharide biosynthesis protein
RA	2,028,646	G→A	11.7%	W129* (TGG→TAG) ‡	wbpM →	polysaccharide biosynthesis protein
RA	2,028,652	Δ1 bp	11.5%	coding (392/2067 nt)	wbpM →	polysaccharide biosynthesis protein
RA	2,039,009	G→C	5.4%	N157K (AAC→AAG)	rffE ←	UDP‑N‑acetylglucosamine‑2‑epimerase
RA	2,043,319	G→A	6.1%	R196H (CGC→CAC)	PP_1817 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	2,048,730:1	+C	8.7%	coding (572/603 nt)	PP_1821 →	glutathione S‑transferase family protein
RA	2,048,736	C→A	8.5%	P193Q (CCG→CAG) ‡	PP_1821 →	glutathione S‑transferase family protein
RA	2,048,737	G→T	8.5%	P193P (CCG→CCT) ‡	PP_1821 →	glutathione S‑transferase family protein
RA	2,048,743	T→C	8.5%	H195H (CAT→CAC)	PP_1821 →	glutathione S‑transferase family protein
RA	2,048,744	G→A	8.5%	V196M (GTG→ATG)	PP_1821 →	glutathione S‑transferase family protein
RA	2,048,750	A→C	7.9%	M198L (ATG→CTG)	PP_1821 →	glutathione S‑transferase family protein
RA	2,051,065	T→A	9.3%	intergenic (‑63/+23)	PP_1825 ← / ← PP_1826	hypothetical protein/isochorismatase family hydrolase
RA	2,057,851	G→A	12.1%	intergenic (+67/+61)	PP_1832 → / ← PP_1833	oxidase/hypothetical protein
RA	2,062,856	G→T	7.2%	G591W (GGG→TGG)	PP_1838 →	membrane protein
RA	2,084,111	T→A	9.4%	intergenic (+15/+14)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,112	T→A	9.4%	intergenic (+16/+13)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,084,113	T→A	9.4%	intergenic (+17/+12)	PP_1862 → / ← PP_1863	membrane protein/LysR family transcriptional regulator
RA	2,092,426	T→A	8.6%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,427	T→A	8.6%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,095,310	C→T	11.1%	A390T (GCA→ACA)	alaA ←	glutamate‑pyruvate aminotransferase
RA	2,118,728	G→C	8.3%	G802R (GGG→CGG)	PP_1884 →	hypothetical protein
RA	2,134,271	A→C	13.3%	intergenic (‑37/+32)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,278	G→T	12.9%	intergenic (‑44/+25)	PP_1892 ← / ← fadE	hypothetical protein/medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,909	G→C	7.0%	L614L (CTC→CTG)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,916	Δ1 bp	7.7%	coding (1835/2448 nt)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,920:1	+A	7.7%	coding (1831/2448 nt)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,925	T→C	7.4%	K609R (AAG→AGG)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,134,927	G→C	7.4%	L608L (CTC→CTG)	fadE ←	medium‑long chain acyl‑CoA dehydrogenase
RA	2,138,409	T→G	5.8%	L171R (CTG→CGG)	yadG →	ABC transporter ATP‑binding protein
RA	2,139,622	T→G	8.8%	Q167H (CAA→CAC)	PP_5481 ←	hypothetical protein
RA	2,139,628	A→T	8.4%	R165R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,631	A→T	8.9%	R164R (CGT→CGA)	PP_5481 ←	hypothetical protein
RA	2,139,637	C→A	7.3%	Q162H (CAG→CAT)	PP_5481 ←	hypothetical protein
RA	2,141,384	T→A	6.1%	L374M (TTG→ATG)	PP_1897 →	DNA internalization‑related competence protein ComEC/Rec2
RA	2,144,368	G→C	9.8%	Q239H (CAG→CAC)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,372	C→A	11.3%	L241M (CTG→ATG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,377	T→G	11.1%	H242Q (CAT→CAG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,144,381	G→C	9.4%	V244L (GTG→CTG)	lpxK →	tetraacyldisaccharide 4'‑kinase
RA	2,147,208	T→G	5.8%	intergenic (+81/+36)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,209	T→C	5.7%	intergenic (+82/+35)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,210	G→A	5.8%	intergenic (+83/+34)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,147,211	C→A	5.7%	intergenic (+84/+33)	murB → / ← rne	UDP‑N‑acetylenolpyruvoylglucosamine reductase/ribonuclease E
RA	2,149,448	C→G	9.9%	E358Q (GAG→CAG)	rne ←	ribonuclease E
RA	2,149,451	C→G	10.0%	E357Q (GAA→CAA)	rne ←	ribonuclease E
RA	2,149,454	C→G	9.2%	V356L (GTT→CTT)	rne ←	ribonuclease E
RA	2,154,403	G→A	7.7%	S123S (AGC→AGT)	PP_1909 ←	septum formation protein
RA	2,154,407	T→C	7.9%	N122S (AAC→AGC)	PP_1909 ←	septum formation protein
RA	2,154,409	C→G	8.0%	L121L (CTG→CTC) ‡	PP_1909 ←	septum formation protein
RA	2,154,411	G→A	8.0%	L121L (CTG→TTG) ‡	PP_1909 ←	septum formation protein
RA	2,154,415	T→C	7.8%	A119A (GCA→GCG)	PP_1909 ←	septum formation protein
RA	2,165,573	T→C	6.9%	intergenic (‑36/+32)	PP_1920 ← / ← PP_5483	hypothetical protein/hypothetical protein
RA	2,173,832	C→A	5.7%	A65A (GCG→GCT) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,173,833	G→T	5.2%	A65E (GCG→GAG) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,173,836	A→C	5.2%	I64S (ATC→AGC) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,173,837	T→G	5.2%	I64L (ATC→CTC) ‡	PP_1926 ←	phosphotyrosine‑protein phosphatase
RA	2,195,356	A→G	7.1%	S103S (TCT→TCC)	PP_1940 ←	methyl‑accepting chemotaxis transducer
RA	2,224,100	C→T	7.0%	W149* (TGG→TGA)	PP_1962 ←	site‑specific recombinase
RA	2,227,745	C→T	6.8%	intergenic (‑344/‑103)	PP_1964 ← / → holB	dGMP/dTMP/dhydroxyCMP kinase/DNA polymerase III subunit delta'
RA	2,227,746	A→T	6.6%	intergenic (‑345/‑102)	PP_1964 ← / → holB	dGMP/dTMP/dhydroxyCMP kinase/DNA polymerase III subunit delta'
RA	2,227,747	A→G	6.6%	intergenic (‑346/‑101)	PP_1964 ← / → holB	dGMP/dTMP/dhydroxyCMP kinase/DNA polymerase III subunit delta'
RA	2,228,440	T→C	5.3%	L198S (TTG→TCG)	holB →	DNA polymerase III subunit delta'
RA	2,231,466	T→C	8.9%	L228P (CTG→CCG)	PP_1969 →	molybdenum cofactor biosynthesis protein A
RA	2,241,568	G→C	6.8%	noncoding (35/76 nt)	PP_t25 →	tRNA‑Ala
RA	2,246,241	C→T	8.6%	intergenic (+30/+61)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,246,242	A→G	8.6%	intergenic (+31/+60)	ibpA → / ← PP_1983	small heat shock protein IbpA/PAS/PAC/GAF sensor‑containing diguanylate cyclase/phosphodiesterase
RA	2,250,895	A→G	6.5%	I76V (ATC→GTC)	leuC →	3‑isopropylmalate dehydratase large subunit
RA	2,252,813	T→A	9.1%	intergenic (+69/‑50)	leuD → / → PP_1987	3‑isopropylmalate dehydratase small subunit/UbiE/COQ5 family methlytransferase
RA	2,252,814	T→A	8.2%	intergenic (+70/‑49)	leuD → / → PP_1987	3‑isopropylmalate dehydratase small subunit/UbiE/COQ5 family methlytransferase
RA	2,273,052	A→G	6.9%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,062	C→G	7.2%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,066	A→T	7.2%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,070	C→G	7.3%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,080	C→T	6.2%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,867	T→G	7.7%	Q167P (CAG→CCG)	PP_2004 ←	AraC family transcriptional regulator
RA	2,273,873	G→C	7.7%	P165R (CCG→CGG) ‡	PP_2004 ←	AraC family transcriptional regulator
RA	2,273,874	G→C	7.7%	P165A (CCG→GCG) ‡	PP_2004 ←	AraC family transcriptional regulator
RA	2,273,880	C→A	8.4%	G163C (GGC→TGC)	PP_2004 ←	AraC family transcriptional regulator
RA	2,282,770	T→G	31.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,774	G→C	29.0%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,775	G→C	29.2%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,779	C→A	27.9%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,812	C→A	15.9%	intergenic (‑204/+25)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,819	G→A	10.4%	intergenic (‑211/+18)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,290,396	C→T	5.4%	intergenic (+21/‑254)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,397	C→G	5.1%	intergenic (+22/‑253)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,290,398	A→G	5.0%	intergenic (+23/‑252)	pepN → / → PP_2018	aminopeptidase N/BNR domain‑containing protein
RA	2,294,021	T→A	6.0%	L6M (TTG→ATG)	PP_2020 →	lipoprotein
RA	2,308,753	T→C	5.7%	Q106R (CAA→CGA)	PP_2031 ←	hypothetical protein
RA	2,318,661	A→G	5.3%	A301A (GCA→GCG)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,318,662	C→T	5.4%	R302C (CGC→TGC)	PP_2039 →	acyl‑CoA dehydrogenase
RA	2,342,102	C→A	6.7%	intergenic (+17/‑47)	yraO → / → PP_2058	transporter YraO/porin
RA	2,342,103	T→G	6.3%	intergenic (+18/‑46)	yraO → / → PP_2058	transporter YraO/porin
RA	2,344,682	G→T	5.8%	intergenic (‑33/+42)	PP_2061 ← / ← PP_2062	hypothetical protein/hypothetical protein
RA	2,345,324	T→G	6.2%	G8G (GGA→GGC) ‡	PP_2062 ←	hypothetical protein
RA	2,345,325	C→G	6.0%	G8A (GGA→GCA) ‡	PP_2062 ←	hypothetical protein
RA	2,345,326	C→A	6.9%	G8* (GGA→TGA) ‡	PP_2062 ←	hypothetical protein
RA	2,351,763	C→G	6.5%	R501T (AGG→ACG) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,764	T→G	6.1%	R501R (AGG→CGG) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,766	G→C	6.1%	A500G (GCC→GGC)	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,768	C→A	6.7%	R499R (CGG→CGT) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,351,769	C→G	6.1%	R499P (CGG→CCG) ‡	PP_2067 ←	EmrB/QacA family drug resistance transporter
RA	2,355,495	C→T	5.1%	A172A (GCG→GCA)	PP_2069 ←	multidrug MFS transporter outer membrane protein
RA	2,356,511	C→A	6.1%	G104V (GGC→GTC)	PP_2070 ←	AraC family transcriptional regulator
RA	2,356,514	T→G	5.2%	D103A (GAC→GCC)	PP_2070 ←	AraC family transcriptional regulator
RA	2,369,767	T→C	6.1%	L862P (CTG→CCG) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,768	G→C	7.2%	L862L (CTG→CTC) ‡	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,369,769	G→A	6.6%	G863S (GGC→AGC)	gdhB →	NAD‑specific glutamate dehydrogenase
RA	2,372,081	G→T	6.0%	intergenic (+33/+79)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,082	T→C	6.4%	intergenic (+34/+78)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,083	G→A	6.5%	intergenic (+35/+77)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,372,084	A→C	7.2%	intergenic (+36/+76)	gdhB → / ← PP_2081	NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein
RA	2,378,690	A→T	5.1%	N82I (AAT→ATT)	PP_2086 →	CrfX family protein
RA	2,381,402	T→G	9.7%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,403	C→A	10.5%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,385,793	Δ1 bp	6.8%	coding (85/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,385,797:1	+A	6.8%	coding (81/576 nt)	PP_2093 ←	two‑component system response regulator NasT
RA	2,388,336	C→G	5.1%	intergenic (+73/+71)	pyrD → / ← rmf	dihydroorotate dehydrogenase/ribosome modulation factor
RA	2,395,583	G→C	8.3%	intergenic (‑191/+52)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,585	A→T	8.3%	intergenic (‑193/+50)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,395,587	G→C	9.2%	intergenic (‑195/+48)	dacB ← / ← PP_2099	D‑alanyl‑D‑alanine carboxypeptidase/hypothetical protein
RA	2,397,172	A→C	10.3%	F829V (TTC→GTC)	PP_2100 ←	two‑component system sensor protein
RA	2,397,173	G→C	9.9%	R828R (CGC→CGG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,177	A→T	9.8%	L827Q (CTG→CAG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,181	G→C	10.5%	P826A (CCG→GCG)	PP_2100 ←	two‑component system sensor protein
RA	2,397,182	G→T	9.8%	D825E (GAC→GAA)	PP_2100 ←	two‑component system sensor protein
RA	2,402,301:1	+A	6.7%	coding (66/330 nt)	PP_2103 ←	hypothetical protein
RA	2,402,308	A→T	6.8%	L20Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,402,311	A→T	6.5%	L19Q (CTG→CAG)	PP_2103 ←	hypothetical protein
RA	2,406,964	A→T	6.4%	intergenic (+219/+35)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,406,965	G→C	5.9%	intergenic (+220/+34)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,406,966	A→T	5.9%	intergenic (+221/+33)	PP_2110 → / ← PP_2111	ribosomal large subunit pseudouridine synthase/aerotaxis receptor
RA	2,420,598	Δ1 bp	5.7%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,602:1	+T	5.6%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,438,202	G→C	5.4%	K374N (AAG→AAC)	fadB →	enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
RA	2,447,418	G→C	5.5%	L269L (CTG→CTC)	nagZ →	beta‑N‑acetylglucosaminidase
RA	2,454,312	C→A	9.8%	S269S (TCG→TCT)	mfd ←	transcription‑repair coupling factor
RA	2,456,782	T→C	5.4%	intergenic (+33/‑148)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,783	T→G	6.0%	intergenic (+34/‑147)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,784	C→A	5.4%	intergenic (+35/‑146)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,456,785	G→A	5.7%	intergenic (+36/‑145)	gapB → / → PP_2150	glyceraldehyde‑3‑phosphate dehydrogenase/thiamine biosynthesis lipoprotein
RA	2,461,735	A→T	8.8%	Q245L (CAG→CTG)	lolC →	lipoprotein releasing system transmembrane protein LolC
RA	2,462,930	T→A	5.8%	L229Q (CTG→CAG)	lolD →	lipoprotein‑releasing system ATP‑binding protein LolD
RA	2,478,849	T→G	5.0%	intergenic (+102/+343)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,478,850	T→C	5.0%	intergenic (+103/+342)	PP_2172 → / ← PP_2173	hypothetical protein/AraC family transcriptional regulator
RA	2,483,397	G→A	5.9%	R88H (CGC→CAC)	puuA‑I →	glutamate‑putrescine ligase
RA	2,483,400	T→A	5.3%	L89Q (CTG→CAG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,483,403	T→C	5.7%	V90A (GTG→GCG)	puuA‑I →	glutamate‑putrescine ligase
RA	2,485,379	G→C	5.4%	intergenic (+40/‑30)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,485,380	C→G	5.4%	intergenic (+41/‑29)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,485,381	G→C	5.4%	intergenic (+42/‑28)	spuA → / → spuC‑I	glutamine amidotransferase/polyamine:pyruvate transaminase
RA	2,486,181	C→G	5.3%	A258G (GCC→GGC)	spuC‑I →	polyamine:pyruvate transaminase
RA	2,486,810	A→G	7.9%	intergenic (+43/‑141)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,819	C→G	7.0%	intergenic (+52/‑132)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,820	T→C	7.2%	intergenic (+53/‑131)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,821	G→A	7.3%	intergenic (+54/‑130)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,822	C→G	7.9%	intergenic (+55/‑129)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,486,831	C→T	5.8%	intergenic (+64/‑120)	spuC‑I → / → PP_2181	polyamine:pyruvate transaminase/Cro/CI family transcriptional regulator
RA	2,508,898	A→G	5.5%	C73R (TGC→CGC)	PP_2203 ←	hypothetical protein
RA	2,508,900	G→C	5.6%	S72W (TCG→TGG)	PP_2203 ←	hypothetical protein
RA	2,508,905	A→C	6.3%	L70L (CTT→CTG) ‡	PP_2203 ←	hypothetical protein
RA	2,508,906	A→T	5.7%	L70H (CTT→CAT) ‡	PP_2203 ←	hypothetical protein
RA	2,508,907	G→T	6.4%	L70I (CTT→ATT) ‡	PP_2203 ←	hypothetical protein
RA	2,508,912	G→C	5.7%	P68R (CCA→CGA)	PP_2203 ←	hypothetical protein
RA	2,508,914	C→T	5.8%	A67A (GCG→GCA)	PP_2203 ←	hypothetical protein
RA	2,508,920	G→A	6.0%	G65G (GGC→GGT)	PP_2203 ←	hypothetical protein
RA	2,531,110	A→C	10.1%	I117L (ATA→CTA)	PP_2219 →	hypothetical protein
RA	2,532,024	T→C	7.1%	intergenic (+81/‑205)	PP_2222 → / → PP_2223	hypothetical protein/hypothetical protein
RA	2,540,810	G→C	8.3%	intergenic (+23/+26)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,540,811	T→A	8.1%	intergenic (+24/+25)	PP_2232 → / ← PP_2233	XRE family transcriptional regulator/isochorismatase family hydrolase
RA	2,557,442	T→A	7.0%	intergenic (‑132/‑299)	PP_2241 ← / → fepA	MFS transporter/ferric enterobactin transport system outer membrane subunit
RA	2,574,299	C→G	7.0%	A352G (GCC→GGC)	PP_2257 →	aerotaxis receptor
RA	2,574,303	G→T	6.9%	E353D (GAG→GAT)	PP_2257 →	aerotaxis receptor
RA	2,606,472	G→A	7.8%	D328N (GAT→AAT)	PP_2284 →	tail tubular protein B
RA	2,618,706	A→T	6.9%	Y203N (TAC→AAC)	PP_2292 ←	hypothetical protein
RA	2,628,386	A→C	6.7%	A16A (GCA→GCC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,628,387	G→T	6.8%	G17C (GGC→TGC)	clpP →	ATP‑dependent Clp protease proteolytic subunit
RA	2,633,457	T→G	13.2%	intergenic (+100/‑82)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,633,458	C→A	13.5%	intergenic (+101/‑81)	hupB → / → PP_2304	DNA binding regulator subunit beta B/peptidyl‑prolyl cis‑trans isomerase D
RA	2,641,799	A→C	5.4%	Q21P (CAG→CCG)	PP_2312 →	lytic transglycosylase family protein
RA	2,641,804	C→A	6.9%	R23S (CGC→AGC)	PP_2312 →	lytic transglycosylase family protein
RA	2,641,807	T→G	5.7%	S24A (TCG→GCG)	PP_2312 →	lytic transglycosylase family protein
RA	2,641,812	G→T	7.3%	P25P (CCG→CCT)	PP_2312 →	lytic transglycosylase family protein
RA	2,659,389	A→G	6.3%	I316T (ATC→ACC)	PP_2331 ←	membrane protein
RA	2,706,509	A→C	6.2%	T1222T (ACA→ACC)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,706,511	C→G	6.5%	A1223G (GCC→GGC)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,706,513	G→T	6.6%	G1224C (GGT→TGT)	PP_2369 →	leucine‑rich repeat‑containing protein
RA	2,711,618	G→A	11.4%	T1162T (ACC→ACT) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,711,619	G→C	11.4%	T1162S (ACC→AGC) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,711,620	T→C	11.3%	T1162A (ACC→GCC) ‡	metH ←	cobalamin‑dependent methionine synthase
RA	2,715,414	C→T	9.2%	C43C (TGC→TGT)	cti →	esterified fatty acid cis/trans isomerase
RA	2,719,691	G→A	10.9%	G13S (GGC→AGC)	PP_2379 →	cytochrome oxidase biogenesis protein
RA	2,722,218	T→C	8.5%	S247P (TCG→CCG)	PP_2382 →	putative transporter
RA	2,722,221	G→A	8.6%	V248M (GTG→ATG)	PP_2382 →	putative transporter
RA	2,777,000	C→G	9.1%	A169P (GCA→CCA)	PP_2429 ←	membrane protein
RA	2,777,007	C→G	10.0%	W166C (TGG→TGC)	PP_2429 ←	membrane protein
RA	2,796,585	T→C	12.5%	intergenic (+18/‑155)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,796,588	G→T	11.6%	intergenic (+21/‑152)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,796,589	A→T	13.0%	intergenic (+22/‑151)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,796,590	A→T	13.0%	intergenic (+23/‑150)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,796,591	A→C	13.0%	intergenic (+24/‑149)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,796,594	G→A	13.5%	intergenic (+27/‑146)	PP_t42 → / → PP_t43	tRNA‑Val/tRNA‑Val
RA	2,799,171	A→G	7.7%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,180	A→G	7.8%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,808,544	A→C	9.8%	noncoding (416/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,545	C→T	8.4%	noncoding (415/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,547	A→G	8.3%	noncoding (413/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,808,548	G→T	9.2%	noncoding (412/434 nt)	PP_mr35 ←	cspA regulatory region
RA	2,809,757	C→G	7.4%	A55G (GCC→GGC)	thrS →	threonine‑‑tRNA ligase
RA	2,820,597	C→T	7.3%	intergenic (+398/+114)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,820,598	G→C	7.4%	intergenic (+399/+113)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,820,599	A→G	7.3%	intergenic (+400/+112)	PP_2473 → / ← PP_2474	hypothetical protein/glutathione S‑transferase family protein
RA	2,829,819	C→T	8.2%	N141N (AAC→AAT)	PP_2482 →	molybdenum cofactor biosynthesis protein A
RA	2,829,821	G→C	8.2%	G142A (GGC→GCC)	PP_2482 →	molybdenum cofactor biosynthesis protein A
RA	2,829,823	A→G	8.0%	I143V (ATT→GTT)	PP_2482 →	molybdenum cofactor biosynthesis protein A
RA	2,841,935	T→A	15.2%	intergenic (‑114/+138)	yqhD ← / ← PP_2493	NAD(P)‑dependent alcohol dehydrogenase/RadC family protein
RA	2,841,936	T→A	17.8%	intergenic (‑115/+137)	yqhD ← / ← PP_2493	NAD(P)‑dependent alcohol dehydrogenase/RadC family protein
RA	2,846,257	G→A	9.1%	intergenic (‑142/‑63)	PP_2497 ← / → PP_2498	hypothetical protein/hypothetical protein
RA	2,852,397	T→A	9.6%	Q312L (CAG→CTG)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,403	A→C	8.3%	L310R (CTC→CGC)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,406	A→C	7.7%	L309R (CTG→CGG) ‡	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,407	G→C	8.5%	L309V (CTG→GTG) ‡	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,852,408	G→T	12.4%	A308A (GCC→GCA)	PP_2505 ←	GAF domain/GGDEF domain‑containing protein
RA	2,853,770	G→T	11.1%	S41I (AGT→ATT) ‡	PP_2506 →	membrane protein
RA	2,853,771	T→A	9.5%	S41R (AGT→AGA) ‡	PP_2506 →	membrane protein
RA	2,853,772	A→C	9.5%	I42L (ATC→CTC)	PP_2506 →	membrane protein
RA	2,859,149	G→A	6.2%	C127Y (TGT→TAT) ‡	PP_2511 →	hypothetical protein
RA	2,859,150	T→C	6.3%	C127C (TGT→TGC) ‡	PP_2511 →	hypothetical protein
RA	2,859,821	G→A	12.2%	G20S (GGC→AGC)	PP_5535 →	membrane protein
RA	2,859,824	C→A	12.8%	L21M (CTG→ATG) ‡	PP_5535 →	membrane protein
RA	2,859,825	T→G	13.7%	L21R (CTG→CGG) ‡	PP_5535 →	membrane protein
RA	2,859,828	T→C	13.9%	L22P (CTG→CCG)	PP_5535 →	membrane protein
RA	2,863,829	T→G	11.4%	S297A (TCG→GCG)	gllR →	HTH‑type transcriptional regulator GalR
RA	2,868,876	G→C	8.4%	intergenic (+415/‑516)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,868,877	G→C	8.4%	intergenic (+416/‑515)	PP_2520 → / → PP_2522	hypothetical protein/transposase
RA	2,876,231	T→C	8.1%	T44A (ACC→GCC)	PP_2530 ←	hypothetical protein
RA	2,878,895	C→T	9.7%	T37T (ACG→ACA)	PP_2533 ←	D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	2,880,316	T→C	11.5%	V53A (GTG→GCG)	PP_2535 →	transport protein
RA	2,880,319	T→C	11.5%	L54P (CTG→CCG)	PP_2535 →	transport protein
RA	2,880,324	G→A	11.5%	G56S (GGC→AGC)	PP_2535 →	transport protein
RA	2,880,327	G→A	11.7%	A57T (GCG→ACG)	PP_2535 →	transport protein
RA	2,885,364	C→G	7.4%	S172T (AGC→ACC)	PP_2541 ←	transcriptional factor‑like protein
RA	2,885,727	T→A	5.4%	D51V (GAC→GTC)	PP_2541 ←	transcriptional factor‑like protein
RA	2,891,803	A→T	9.4%	L13Q (CTG→CAG)	PP_2546 ←	membrane protein
RA	2,891,806	A→T	9.8%	L12Q (CTG→CAG)	PP_2546 ←	membrane protein
RA	2,892,777	A→G	7.1%	intergenic (‑10/‑234)	PP_2547 ← / → PP_2548	LysR family transcriptional regulator/sugar MFS transporter
RA	2,903,780	G→C	6.3%	A383G (GCG→GGG)	PP_2556 ←	chromate transporter
RA	2,903,783	G→C	6.1%	T382S (ACT→AGT)	PP_2556 ←	chromate transporter
RA	2,903,787	T→C	6.0%	I381V (ATC→GTC)	PP_2556 ←	chromate transporter
RA	2,903,789	C→G	7.5%	G380A (GGG→GCG) ‡	PP_2556 ←	chromate transporter
RA	2,903,790	C→G	6.1%	G380R (GGG→CGG) ‡	PP_2556 ←	chromate transporter
RA	2,903,796	G→C	6.3%	L378V (CTG→GTG)	PP_2556 ←	chromate transporter
RA	2,903,799	G→C	6.2%	P377A (CCA→GCA)	PP_2556 ←	chromate transporter
RA	2,921,460	G→A	100%	G3494R (GGG→AGG)	PP_2561 →	hemolysin‑type calcium‑binding bacteriocin
RA	2,941,390	T→G	7.4%	F208V (TTT→GTT)	PP_2574 →	LysR family transcriptional regulator
RA	2,951,334	G→C	12.1%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,341	A→C	13.8%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,342	G→T	13.6%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,349	G→C	17.0%	intergenic (‑128/+33)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,973,259	Δ1 bp	6.5%	coding (615/1713 nt)	PP_2600 ←	hypothetical protein
RA	2,973,265:1	+T	6.2%	coding (609/1713 nt)	PP_2600 ←	hypothetical protein
RA	2,990,761	Δ1 bp	7.4%	coding (719/2169 nt)	vgrG‑I ←	type VI secretion system protein
RA	2,998,793	G→A	8.0%	G65G (GGC→GGT)	PP_2622 ←	hypothetical protein
RA	3,000,765	T→A	6.8%	V77V (GTA→GTT)	PP_2624 ←	hypothetical protein
RA	3,000,803	C→G	6.2%	V65L (GTG→CTG)	PP_2624 ←	hypothetical protein
RA	3,000,804	G→C	6.3%	S64R (AGC→AGG) ‡	PP_2624 ←	hypothetical protein
RA	3,000,805	C→G	6.5%	S64T (AGC→ACC) ‡	PP_2624 ←	hypothetical protein
RA	3,002,525	G→C	5.6%	G189A (GGT→GCT)	PP_2626 →	hypothetical protein
RA	3,008,318	C→T	7.9%	S259S (TCG→TCA)	PP_2628 ←	ABC transporter ATP‑binding protein
RA	3,011,520	G→A	8.7%	R194Q (CGG→CAG)	bcsG →	endoglucanase
RA	3,030,355:1	+C	7.0%	intergenic (+355/‑339)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,361	C→G	7.1%	intergenic (+361/‑333)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,364	C→G	7.0%	intergenic (+364/‑330)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,369	Δ1 bp	7.0%	intergenic (+369/‑325)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,413	C→G	5.4%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,417	G→C	5.9%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,515	C→A	6.1%	intergenic (+515/‑179)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,520	T→G	6.1%	intergenic (+520/‑174)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,038,153	C→T	7.5%	A142V (GCC→GTC)	gbd →	4‑hydroxybutyrate dehydrogenase
RA	3,048,604	G→T	7.3%	intergenic (+59/‑237)	PP_2661 → / → PP_2662	hypothetical protein/hypothetical protein
RA	3,059,329	G→A	6.3%	R203H (CGC→CAC)	PP_2671 →	sensor histidine kinase
RA	3,060,956	A→G	8.7%	F182L (TTT→CTT)	PP_2673 ←	pentapeptide repeat‑containing protein
RA	3,068,346	A→G	7.6%	K462R (AAG→AGG)	qedH‑II →	quinoprotein ethanol dehydrogenase
RA	3,087,768	G→C	7.4%	R259R (CGC→CGG) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,087,769	C→G	7.4%	R259P (CGC→CCC) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,087,770	G→C	7.3%	R259G (CGC→GGC) ‡	metR‑II ←	homocysteine‑binding DNA‑binding transcriptional regulator
RA	3,116,170	T→C	9.7%	L303P (CTG→CCG)	PP_2732 →	hypothetical protein
RA	3,116,175	G→A	9.5%	G305S (GGC→AGC)	PP_2732 →	hypothetical protein
RA	3,117,504	A→G	6.0%	F360L (TTT→CTT)	cfa ←	cyclopropane‑fatty‑acyl‑phospholipid synthase
RA	3,129,459	T→C	7.5%	F236L (TTC→CTC)	dmoA‑I →	dimethyl‑sulfide monooxygenase
RA	3,140,401	G→A	7.5%	A319T (GCT→ACT)	sfnB →	SfnB family sulfur acquisition oxidoreductase
RA	3,146,578	G→C	8.0%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,579	G→C	8.3%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,149,790	C→G	7.3%	H333D (CAT→GAT) ‡	PP_2765 →	sulfonate monooxygenase MsuD
RA	3,149,792	T→A	5.8%	H333Q (CAT→CAA) ‡	PP_2765 →	sulfonate monooxygenase MsuD
RA	3,149,795	C→G	6.5%	F334L (TTC→TTG)	PP_2765 →	sulfonate monooxygenase MsuD
RA	3,149,933	T→A	11.1%	L13M (TTG→ATG) ‡	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,149,934	T→A	11.1%	L13* (TTG→TAG) ‡	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,149,942	C→G	6.1%	R16G (CGG→GGG)	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,158,307	C→G	10.2%	P109R (CCT→CGT)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,158,310	C→G	10.0%	T110R (ACG→AGG)	opuA →	glycine betaine ABC transporter ATP‑binding protein/permease
RA	3,200,892	G→A	8.7%	G74S (GGC→AGC)	PP_2808 →	oxidoreductase
RA	3,201,428:1	+C	7.0%	coding (756/1368 nt)	PP_2808 →	oxidoreductase
RA	3,234,799	T→C	10.8%	intergenic (+40/‑107)	PP_2833 → / → PP_2834	LysR family transcriptional regulator/D‑galactarate dehydratase/altronate dehydratase
RA	3,234,801	C→G	10.4%	intergenic (+42/‑105)	PP_2833 → / → PP_2834	LysR family transcriptional regulator/D‑galactarate dehydratase/altronate dehydratase
RA	3,234,803	G→A	11.3%	intergenic (+44/‑103)	PP_2833 → / → PP_2834	LysR family transcriptional regulator/D‑galactarate dehydratase/altronate dehydratase
RA	3,260,338	T→A	8.5%	Q161L (CAG→CTG)	PP_2857 ←	hypothetical protein
RA	3,260,346	G→A	7.8%	T158T (ACC→ACT) ‡	PP_2857 ←	hypothetical protein
RA	3,260,347	G→C	7.6%	T158S (ACC→AGC) ‡	PP_2857 ←	hypothetical protein
RA	3,260,348	T→C	7.6%	T158A (ACC→GCC) ‡	PP_2857 ←	hypothetical protein
RA	3,268,089	C→T	6.9%	A187V (GCG→GTG)	azoR1 →	FMN‑dependent NADH‑azoreductase
RA	3,274,836	T→A	11.5%	H198Q (CAT→CAA)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,274,838	C→G	11.3%	A199G (GCC→GGC)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,274,840	T→A	11.3%	L200M (TTG→ATG)	eamA →	O‑acetylserine/cysteine export transporter
RA	3,287,276	T→C	14.3%	intergenic (+17/+24)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,287,277	G→A	15.3%	intergenic (+18/+23)	PP_2889 → / ← xthA	transmembrane regulator PrtR/exodeoxyribonuclease III/apurinic/apyrimidinic endodeoxyribonuclease VI
RA	3,289,727	T→A	8.2%	T253T (ACT→ACA)	PP_2892 →	hypothetical protein
RA	3,289,730	T→A	7.0%	A254A (GCT→GCA)	PP_2892 →	hypothetical protein
RA	3,289,733	T→A	7.1%	A255A (GCT→GCA)	PP_2892 →	hypothetical protein
RA	3,312,687	G→T	9.1%	intergenic (+28/‑134)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,688	T→A	8.9%	intergenic (+29/‑133)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,689	T→A	8.9%	intergenic (+30/‑132)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,312,690	A→C	8.9%	intergenic (+31/‑131)	PP_2912 → / → hemB	hypothetical protein/5‑aminolevulinate dehydratase
RA	3,328,670	T→C	9.7%	V74A (GTC→GCC)	PP_2927 →	hypothetical protein
RA	3,332,701	A→T	7.6%	L135Q (CTG→CAG)	PP_2930 ←	L‑serine dehydratase
RA	3,332,792	G→A	11.7%	Q105* (CAA→TAA)	PP_2930 ←	L‑serine dehydratase
RA	3,333,896	G→T	6.0%	R556S (CGC→AGC)	PP_2932 ←	amidase family protein
RA	3,333,899	A→C	6.7%	S555A (TCG→GCG)	PP_2932 ←	amidase family protein
RA	3,352,174	A→G	8.0%	intergenic (+64/+78)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,175	G→C	8.4%	intergenic (+65/+77)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,176	C→T	7.8%	intergenic (+66/+76)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,352,182	C→T	7.8%	intergenic (+72/+70)	PP_2947 → / ← PP_2948	transcriptional regulator MvaT/GntR family transcriptional regulator
RA	3,356,266	C→T	5.8%	M194I (ATG→ATA) ‡	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,268	T→C	5.5%	M194V (ATG→GTG) ‡	PP_2952 ←	LysR family transcriptional regulator
RA	3,356,271	A→G	5.6%	Y193H (TAC→CAC)	PP_2952 ←	LysR family transcriptional regulator
RA	3,395,997	C→A	7.0%	H53Q (CAC→CAA)	PP_3000 →	MaoC domain‑containing protein
RA	3,395,998	T→A	7.0%	F54I (TTT→ATT) ‡	PP_3000 →	MaoC domain‑containing protein
RA	3,395,999	T→G	7.0%	F54C (TTT→TGT) ‡	PP_3000 →	MaoC domain‑containing protein
RA	3,402,505	C→T	9.8%	intergenic (+29/‑123)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,506	G→C	9.6%	intergenic (+30/‑122)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,511	G→C	9.5%	intergenic (+35/‑117)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,512	A→G	9.4%	intergenic (+36/‑116)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,402,520	T→A	5.3%	intergenic (+44/‑108)	PP_3010 → / → PP_3011	hypothetical protein/hypothetical protein
RA	3,411,656	A→T	10.1%	K57M (AAG→ATG) ‡	PP_5551 →	hypothetical protein
RA	3,411,657	G→T	10.3%	K57N (AAG→AAT) ‡	PP_5551 →	hypothetical protein
RA	3,411,659	T→A	10.2%	V58D (GTC→GAC)	PP_5551 →	hypothetical protein
RA	3,411,661	A→C	10.8%	N59H (AAT→CAT) ‡	PP_5551 →	hypothetical protein
RA	3,411,662	A→T	12.0%	N59I (AAT→ATT) ‡	PP_5551 →	hypothetical protein
RA	3,428,056	A→T	6.0%	S669C (AGC→TGC)	PP_3042 →	terminase large subunit
RA	3,428,060	C→G	6.0%	S670C (TCC→TGC) ‡	PP_3042 →	terminase large subunit
RA	3,428,061	C→G	6.1%	S670S (TCC→TCG) ‡	PP_3042 →	terminase large subunit
RA	3,428,065	A→T	6.3%	S672C (AGC→TGC)	PP_3042 →	terminase large subunit
RA	3,435,608	G→C	6.9%	A174P (GCC→CCC)	gpJ →	baseplate/tail fiber protein
RA	3,436,184	A→C	6.3%	N40T (AAC→ACC)	gpI →	tail formation protein
RA	3,436,189:1	+A	6.5%	coding (124/813 nt)	gpI →	tail formation protein
RA	3,436,195	T→A	6.5%	W44R (TGG→AGG)	gpI →	tail formation protein
RA	3,436,199	T→C	6.5%	L45P (CTG→CCG) ‡	gpI →	tail formation protein
RA	3,436,200	G→A	6.5%	L45L (CTG→CTA) ‡	gpI →	tail formation protein
RA	3,436,204	T→A	6.0%	W47R (TGG→AGG)	gpI →	tail formation protein
RA	3,466,841	T→G	22.8%	intergenic (‑16/+108)	PP_3081 ← / ← PP_5560	hypothetical protein/hypothetical protein
RA	3,483,796	G→C	5.5%	R710G (CGC→GGC)	PP_3091 ←	membrane protein
RA	3,483,797	C→G	5.6%	P709P (CCG→CCC) ‡	PP_3091 ←	membrane protein
RA	3,483,798	G→C	6.5%	P709R (CCG→CGG) ‡	PP_3091 ←	membrane protein
RA	3,491,228	A→C	7.7%	L55V (TTG→GTG)	clpV ←	protein ClpV1
RA	3,491,233	A→T	7.7%	L53Q (CTG→CAG)	clpV ←	protein ClpV1
RA	3,491,236	A→T	7.7%	L52Q (CTG→CAG)	clpV ←	protein ClpV1
RA	3,491,241	G→T	7.4%	H50Q (CAC→CAA)	clpV ←	protein ClpV1
RA	3,556,081	G→T	9.1%	P166P (CCG→CCT)	PP_3140 →	group 2 family glycosyl transferase
RA	3,556,084	A→C	8.8%	A167A (GCA→GCC)	PP_3140 →	group 2 family glycosyl transferase
RA	3,563,384	A→T	5.8%	L147Q (CTG→CAG)	PP_3146 ←	oxidoreductase
RA	3,563,387	T→C	7.8%	D146G (GAC→GGC)	PP_3146 ←	oxidoreductase
RA	3,563,390	T→C	6.2%	D145G (GAC→GGC)	PP_3146 ←	oxidoreductase
RA	3,580,628	A→G	7.1%	I255V (ATC→GTC)	benR →	BenABC operon transcriptional activator
RA	3,584,898	G→T	9.3%	intergenic (+45/‑90)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,584,899	A→C	9.5%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,588,020	G→A	8.7%	A286T (GCC→ACC)	catA‑II →	catechol 1,2‑dioxygenase
RA	3,590,016	G→T	5.6%	L179L (CTG→CTT)	nicP‑I →	porin‑like protein
RA	3,590,020	A→T	5.8%	N181Y (AAC→TAC)	nicP‑I →	porin‑like protein
RA	3,590,024	A→C	5.6%	E182A (GAA→GCA)	nicP‑I →	porin‑like protein
RA	3,597,083	T→G	9.5%	intergenic (‑78/+18)	nemA ← / ← PP_3174	FMN‑linked N‑ethylmaleimide reductase/oxidoreductase
RA	3,601,674	C→T	7.5%	R131C (CGC→TGC)	PP_3177 →	hypothetical protein
RA	3,610,914	T→C	7.5%	T924A (ACC→GCC)	mcoA ←	Mn(II) copper oxidase A
RA	3,617,993	C→T	7.0%	Q340* (CAG→TAG)	PP_3188 →	hypothetical protein
RA	3,620,295	T→G	8.1%	S20R (AGC→CGC)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,620,297	A→T	8.2%	V19D (GTC→GAC)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,620,299	C→A	8.4%	A18A (GCG→GCT)	PP_3190 ←	ornithine cyclodeaminase/mu‑crystallin family protein
RA	3,624,753	G→A	6.5%	S245S (AGC→AGT)	PP_3195 ←	hypothetical protein
RA	3,630,665	T→A	5.8%	L429Q (CTG→CAG)	PP_3200 →	hypothetical protein
RA	3,632,086	A→C	6.9%	E327A (GAG→GCG)	PP_5590 →	hypothetical protein
RA	3,638,667	C→A	6.1%	H221Q (CAC→CAA)	PP_3205 →	fumarylacetoacetate hydrolase family protein
RA	3,644,948	C→T	9.7%	intergenic (‑43/+23)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,644,951	A→G	9.6%	intergenic (‑46/+20)	PP_3211 ← / ← PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
RA	3,653,195	C→A	8.2%	Q361K (CAG→AAG) ‡	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,653,197	G→C	6.5%	Q361H (CAG→CAC) ‡	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,653,199	T→G	6.4%	L362* (TTA→TGA)	PP_3218 →	NtaA/SnaA/SoxA family monooxygenase
RA	3,657,604	C→T	8.4%	A216T (GCC→ACC)	PP_3222 ←	ABC transporter permease
RA	3,659,906	C→G	9.4%	intergenic (‑41/+34)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,659,908	G→A	9.6%	intergenic (‑43/+32)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,659,909	T→C	9.4%	intergenic (‑44/+31)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,659,911	C→G	9.6%	intergenic (‑46/+29)	PP_3223 ← / ← PP_3224	ABC transporter substrate‑binding protein/class II aldolase/adducin domain‑containing protein
RA	3,668,785	A→G	6.3%	D177D (GAT→GAC)	PP_3232 ←	acetyltransferase
RA	3,674,476	T→C	7.1%	Q27R (CAG→CGG)	PP_3238 ←	transcriptional regulator PyrR
RA	3,674,478	G→C	6.9%	R26R (CGC→CGG)	PP_3238 ←	transcriptional regulator PyrR
RA	3,678,948	C→T	9.2%	A57A (GCG→GCA)	PP_3243 ←	GNAT family acetyltransferase
RA	3,680,737	C→G	6.6%	intergenic (+23/+21)	crtZ → / ← PP_3247	beta‑carotene hydroxylase/bile acid/Na+ symporter family transporter
RA	3,680,738	C→G	6.9%	intergenic (+24/+20)	crtZ → / ← PP_3247	beta‑carotene hydroxylase/bile acid/Na+ symporter family transporter
RA	3,682,573	G→C	7.5%	M246I (ATG→ATC)	PP_3248 →	Dyp‑type peroxidase family protein
RA	3,716,155	T→G	6.6%	D45A (GAC→GCC)	paaI ←	hydroxyphenylacetyl‑CoA thioesterase
RA	3,716,159	C→T	8.0%	A44T (GCC→ACC)	paaI ←	hydroxyphenylacetyl‑CoA thioesterase
RA	3,716,164	A→G	6.4%	V42A (GTA→GCA)	paaI ←	hydroxyphenylacetyl‑CoA thioesterase
RA	3,716,168	C→A	6.4%	A41S (GCG→TCG)	paaI ←	hydroxyphenylacetyl‑CoA thioesterase
RA	3,717,745	C→A	8.3%	M18I (ATG→ATT) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,717,746	A→T	8.4%	M18K (ATG→AAG) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,717,747	T→G	8.8%	M18L (ATG→CTG) ‡	paaH ←	3‑hydroxyacyl‑CoA dehydrogenase PaaC
RA	3,718,088	C→G	12.4%	E169Q (GAG→CAG)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,092	C→A	12.7%	L167L (CTG→CTT) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,093	A→T	12.7%	L167Q (CTG→CAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,096	A→T	11.9%	M166K (ATG→AAG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,097	T→G	11.6%	M166L (ATG→CTG) ‡	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,718,101	C→G	11.6%	L164L (CTG→CTC)	paaG ←	2‑(1,2‑epoxy‑1,2‑dihydrophenyl)acetyl‑CoA isomerase
RA	3,720,208	C→A	7.4%	R154R (CGC→CGA)	paaY →	phenylacetate degradation pathway detoxifying thioesterase
RA	3,722,804	T→A	7.8%	Y21N (TAT→AAT) ‡	PP_3288 →	universal stress protein family protein
RA	3,722,805	A→T	7.6%	Y21F (TAT→TTT) ‡	PP_3288 →	universal stress protein family protein
RA	3,722,806	T→A	7.5%	Y21* (TAT→TAA) ‡	PP_3288 →	universal stress protein family protein
RA	3,723,683	G→T	9.8%	intergenic (+13/+17)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,684	C→T	10.0%	intergenic (+14/+16)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,685	A→G	10.0%	intergenic (+15/+15)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,723,686	A→C	10.0%	intergenic (+16/+14)	PP_3288 → / ← PP_3289	universal stress protein family protein/acetyltransferase
RA	3,729,630	C→A	7.6%	P40Q (CCG→CAG)	PP_3296 →	putative transporter
RA	3,729,634	G→C	7.6%	S41S (TCG→TCC)	PP_3296 →	putative transporter
RA	3,729,636	T→A	6.3%	L42Q (CTG→CAG)	PP_3296 →	putative transporter
RA	3,729,638	G→C	6.9%	G43R (GGA→CGA)	PP_3296 →	putative transporter
RA	3,729,642	T→G	7.0%	L44R (CTG→CGG)	PP_3296 →	putative transporter
RA	3,738,813	A→G	5.6%	Q189R (CAG→CGG)	PP_3303 →	3‑oxoacyl‑ACP synthase
RA	3,759,984	T→C	9.1%	L206P (CTG→CCG) ‡	folEB →	GTP cyclohydrolase I
RA	3,759,985	G→A	9.0%	L206L (CTG→CTA) ‡	folEB →	GTP cyclohydrolase I
RA	3,763,502	A→G	10.0%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,504	G→C	10.0%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,506	C→T	10.0%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,779,129	A→T	6.3%	S112T (TCT→ACT)	nikR ←	nickel‑responsive regulator
RA	3,779,131	A→G	6.0%	L111S (TTG→TCG)	nikR ←	nickel‑responsive regulator
RA	3,787,907	Δ1 bp	100%	coding (728/1392 nt)	PP_3350 ←	hypothetical protein
RA	3,797,420	C→A	9.8%	G192C (GGC→TGC)	vdh ←	vanillin dehydrogenase
RA	3,797,421	T→G	10.5%	A191A (GCA→GCC)	vdh ←	vanillin dehydrogenase
RA	3,798,699:1	+A	8.2%	coding (201/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,704	A→T	8.0%	W66R (TGG→AGG)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,798,709	Δ1 bp	8.1%	coding (191/831 nt)	PP_3358 ←	hydroxycinnamoyl‑CoA hydratase‑lyase
RA	3,799,740:1	+A	9.9%	coding (75/1125 nt)	PP_3360 →	membrane protein
RA	3,799,744	A→T	9.9%	T27S (ACA→TCA)	PP_3360 →	membrane protein
RA	3,799,748	Δ1 bp	10.0%	coding (83/1125 nt)	PP_3360 →	membrane protein
RA	3,799,945	A→C	5.1%	R94R (AGG→CGG) ‡	PP_3360 →	membrane protein
RA	3,799,946	G→T	5.1%	R94M (AGG→ATG) ‡	PP_3360 →	membrane protein
RA	3,844,924	A→T	8.3%	L237Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,928	C→G	7.9%	G236R (GGC→CGC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,929	C→G	7.9%	A235A (GCG→GCC)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,844,933	A→T	7.7%	L234Q (CTG→CAG)	PP_3394 ←	3‑hydroxy‑3‑methylglutaryl‑CoA lyase
RA	3,845,703:1	+G	100%	intergenic (‑70/+28)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,718	C→G	18.0%	intergenic (‑85/+13)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,719	A→G	17.9%	intergenic (‑86/+12)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,720	G→C	17.7%	intergenic (‑87/+11)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,721	C→T	17.9%	intergenic (‑88/+10)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,845,722	C→G	18.0%	intergenic (‑89/+9)	PP_3394 ← / ← PP_3395	3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator
RA	3,850,890	C→T	7.5%	G124G (GGC→GGT)	PP_3398 →	curli fiber surface‑exposed nucleator CsgB
RA	3,853,118	T→A	17.4%	I169N (ATT→AAT)	alkB →	alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
RA	3,869,858	T→G	10.4%	E354A (GAG→GCG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,869,859	C→A	10.4%	E354* (GAG→TAG) ‡	PP_3419 ←	sigma‑54 dependent transcriptional regulator/response regulator
RA	3,879,680	C→A	7.1%	P505P (CCC→CCA)	mexF →	multidrug RND transporter MexF
RA	3,882,254	A→G	8.6%	T305A (ACC→GCC)	oprN →	multidrug RND transporter outer membrane protein OprN
RA	3,892,916	C→A	6.7%	L94M (CTG→ATG)	rarD →	chloramphenicol‑sensitive protein
RA	3,892,921	T→G	6.4%	H95Q (CAT→CAG)	rarD →	chloramphenicol‑sensitive protein
RA	3,903,065	T→C	5.2%	intergenic (+30/+85)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,903,076	T→G	9.7%	intergenic (+41/+74)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,903,077	T→A	7.9%	intergenic (+42/+73)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,903,078	C→A	7.9%	intergenic (+43/+72)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,903,083	G→A	8.1%	intergenic (+48/+67)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,903,089	G→A	8.1%	intergenic (+54/+61)	PP_3445 → / ← ilvA‑I	hypothetical protein/threonine deaminase
RA	3,909,234	A→T	9.6%	S395C (AGC→TGC) ‡	PP_3450 →	TPR repeat‑containing protein
RA	3,909,236	C→T	9.8%	S395S (AGC→AGT) ‡	PP_3450 →	TPR repeat‑containing protein
RA	3,909,240	C→G	9.8%	P397A (CCA→GCA)	PP_3450 →	TPR repeat‑containing protein
RA	3,909,244	A→G	9.8%	D398G (GAC→GGC)	PP_3450 →	TPR repeat‑containing protein
RA	3,912,561	T→G	10.9%	C303G (TGC→GGC) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,912,562	G→C	9.5%	C303S (TGC→TCC) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,912,563	C→A	9.5%	C303* (TGC→TGA) ‡	PP_3452 →	GGDEF domain‑containing protein
RA	3,917,129	T→C	6.4%	L304P (CTG→CCG)	mexB →	multidrug resistance protein MexB
RA	3,920,270	A→G	9.4%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,920,273	C→T	9.4%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,923,389	C→T	8.5%	A475A (GCG→GCA)	peaB ←	quinohemoprotein amine dehydrogenase modification protein
RA	3,947,761	G→A	10.2%	P96P (CCC→CCT)	PP_3483 ←	type II secretion system protein
RA	3,951,159	T→C	100%	intergenic (‑123/+72)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,951,161	A→T	100%	intergenic (‑125/+70)	PP_3486 ← / ← PP_3487	cytochrome c/hypothetical protein
RA	3,960,521	A→T	7.7%	intergenic (‑137/‑192)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,966,763	T→G	5.7%	L319R (CTG→CGG)	ydcP →	peptidase
RA	3,969,323	G→A	10.8%	intergenic (+272/‑43)	PP_3498 → / → PP_3499	transposase/transposase
RA	3,975,166	A→C	11.1%	intergenic (+87/+20)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	3,975,167	A→T	11.1%	intergenic (+88/+19)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	3,975,168	G→T	11.1%	intergenic (+89/+18)	PP_3504 → / ← PP_3505	hypothetical protein/hypothetical protein
RA	3,981,977	A→T	6.9%	noncoding (28/207 nt)	PP_mr43 ←	Cobalamin regulatory region
RA	3,990,299	T→A	7.4%	L195* (TTG→TAG)	PP_3516 →	AraC family transcriptional regulator
RA	4,002,682	A→G	8.7%	intergenic (+29/‑61)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,683	C→G	8.4%	intergenic (+30/‑60)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,002,684	C→T	8.4%	intergenic (+31/‑59)	allE → / → PP_3531	S‑ureidoglycine aminohydrolase/hypothetical protein
RA	4,004,143	T→C	10.4%	W37R (TGG→CGG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,144	G→T	10.1%	W37L (TGG→TTG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,147	A→C	9.9%	Q38P (CAG→CCG) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,004,148	G→A	10.1%	Q38Q (CAG→CAA) ‡	PP_3533 →	ornithine cyclodeaminase
RA	4,006,596	G→C	9.3%	A427G (GCC→GGC)	PP_3535 ←	gamma‑glutamyltransferase
RA	4,021,365	C→G	11.1%	*314S (TGA→TCA)	PP_3547 ←	NAD(P)‑binding oxidoreductase
RA	4,027,746	T→A	7.7%	E228D (GAA→GAT)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,027,751	T→A	6.4%	I227F (ATC→TTC)	PP_3552 ←	two‑component system sensor histidine kinase
RA	4,028,799	C→G	5.4%	A59A (GCC→GCG)	PP_3553 →	AMP‑binding domain‑containing protein
RA	4,054,193:1	+T	10.0%	coding (767/1320 nt)	PP_3573 →	monooxygenase
RA	4,054,198	Δ1 bp	10.0%	coding (772/1320 nt)	PP_3573 →	monooxygenase
RA	4,082,621	G→C	17.7%	G189A (GGC→GCC)	PP_3592 →	RpiR family transcriptional regulator
RA	4,083,051	G→C	6.4%	G17A (GGT→GCT) ‡	PP_3593 →	amino acid ABC transporter substrate‑binding protein
RA	4,083,052	T→A	5.4%	G17G (GGT→GGA) ‡	PP_3593 →	amino acid ABC transporter substrate‑binding protein
RA	4,083,053	G→C	6.8%	A18P (GCC→CCC)	PP_3593 →	amino acid ABC transporter substrate‑binding protein
RA	4,087,755	C→T	9.3%	intergenic (+404/‑22)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,087,756	G→C	9.0%	intergenic (+405/‑21)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,087,757	A→G	9.4%	intergenic (+406/‑20)	PP_3597 → / → PP_3598	amino acid ABC transporter ATP‑binding protein/peptidase C26
RA	4,096,649	T→G	10.4%	S86A (TCG→GCG) ‡	PP_5608 →	hypothetical protein
RA	4,096,650	C→A	10.7%	S86* (TCG→TAG) ‡	PP_5608 →	hypothetical protein
RA	4,101,367	C→G	8.1%	G74A (GGC→GCC)	PP_3609 ←	membrane protein
RA	4,103,353	T→A	10.6%	intergenic (‑108/‑109)	PP_3611 ← / → PP_3612	hypothetical protein/TonB‑dependent receptor
RA	4,107,357	Δ1 bp	8.5%	coding (40/429 nt)	PP_3614 ←	membrane protein
RA	4,125,301	A→T	9.2%	intergenic (+30/+51)	PP_3628 → / ← PP_3629	choline/carnitine/betaine transporter family protein/hypothetical protein
RA	4,125,890	G→A	9.7%	intergenic (‑59/+127)	PP_3629 ← / ← opdT‑II	hypothetical protein/tyrosine‑specific outer membrane porin D
RA	4,128,704	G→A	6.8%	A175V (GCC→GTC)	PP_3632 ←	LysR family transcriptional regulator
RA	4,133,421	A→T	6.5%	L183Q (CTG→CAG)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,424	A→T	6.4%	L182Q (CTG→CAG)	PP_3637 ←	sulfonate ABC transporter ATP‑binding protein
RA	4,133,977	T→A	8.8%	A351A (GCA→GCT) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,979	C→G	9.8%	A351P (GCA→CCA) ‡	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,133,981	T→A	8.7%	Q350L (CAG→CTG)	PP_3638 ←	acyl‑CoA dehydrogenase
RA	4,136,759	T→A	12.9%	intergenic (+47/+23)	PP_3640 → / ← PP_3641	AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,136,760	T→A	13.0%	intergenic (+48/+22)	PP_3640 → / ← PP_3641	AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,136,761	T→A	13.0%	intergenic (+49/+21)	PP_3640 → / ← PP_3641	AraC family transcriptional regulator/cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,166,004	C→A	8.7%	G33V (GGC→GTC)	PP_3666 ←	MHS family metabolite MFS transporter
RA	4,170,450	C→A	9.3%	R58S (CGC→AGC)	PP_3669 →	LysR family transcriptional regulator
RA	4,184,280	T→A	6.4%	W20R (TGG→AGG)	PP_3681 →	putative Helicase
RA	4,187,973	C→G	5.3%	intergenic (+78/‑132)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,187,974	T→C	5.4%	intergenic (+79/‑131)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,228,393	G→A	7.2%	intergenic (‑137/+399)	PP_5624 ← / ← PP_3707	hypothetical protein/hypothetical protein
RA	4,228,395	T→A	7.8%	intergenic (‑139/+397)	PP_5624 ← / ← PP_3707	hypothetical protein/hypothetical protein
RA	4,228,397	T→C	8.1%	intergenic (‑141/+395)	PP_5624 ← / ← PP_3707	hypothetical protein/hypothetical protein
RA	4,234,944	G→C	8.9%	R41G (CGC→GGC)	PP_3711 ←	diguanylate cyclase
RA	4,234,946	T→A	8.9%	Q40L (CAG→CTG)	PP_3711 ←	diguanylate cyclase
RA	4,234,948	G→C	8.9%	A39A (GCC→GCG)	PP_3711 ←	diguanylate cyclase
RA	4,246,185	C→G	10.6%	M30I (ATG→ATC)	alr ←	alanine racemase
RA	4,246,188	C→G	11.1%	S29S (TCG→TCC)	alr ←	alanine racemase
RA	4,250,135	C→T	13.8%	R357H (CGC→CAC)	PP_3725 ←	acyl‑CoA dehydrogenase
RA	4,252,194	C→A	10.6%	intergenic (‑162/+78)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,197	A→G	9.0%	intergenic (‑165/+75)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,202	G→C	9.1%	intergenic (‑170/+70)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,205	G→C	10.0%	intergenic (‑173/+67)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,210	C→T	11.5%	intergenic (‑178/+62)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,213	T→G	9.3%	intergenic (‑181/+59)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,252,217	C→T	8.2%	intergenic (‑185/+55)	PP_3726 ← / ← rocE	enoyl‑CoA hydratase/isomerase family protein/amino acid permease RocE
RA	4,265,951	C→G	5.6%	D170H (GAC→CAC)	PP_3738 ←	transcriptional regulator VanR
RA	4,265,952	C→G	5.6%	V169V (GTG→GTC)	PP_3738 ←	transcriptional regulator VanR
RA	4,274,412	C→G	7.9%	R123R (CGC→CGG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,274,413	G→T	7.4%	V124L (GTG→TTG)	glcD →	glycolate oxidase FAD‑linked subunit
RA	4,286,475	T→C	9.1%	intergenic (‑11/+34)	PP_3757 ← / ← PP_3758	chemotaxis protein CheY/two component system response regulator/sensor histidine kinase
RA	4,287,468	C→G	7.0%	G90R (GGC→CGC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,287,469	C→G	8.4%	A89A (GCG→GCC)	PP_3758 ←	two component system response regulator/sensor histidine kinase
RA	4,289,430	T→G	8.0%	K1053Q (AAG→CAG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,435	T→A	8.1%	E1051V (GAG→GTG)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,289,437	C→A	8.2%	L1050L (CTG→CTT)	PP_3761 ←	two‑component system sensor histidine kinase/response regulator
RA	4,298,892	T→A	8.0%	intergenic (+47/+44)	PP_3770 → / ← PP_3771	hypothetical protein/hypothetical protein
RA	4,301,058	A→G	6.0%	T75A (ACG→GCG)	PP_3774 →	hypothetical protein
RA	4,318,829	G→T	8.2%	G364* (GGA→TGA)	PP_3789 →	efflux transporter
RA	4,318,934	G→C	9.8%	G399R (GGC→CGC)	PP_3789 →	efflux transporter
RA	4,338,493	A→T	13.8%	intergenic (+113/+29)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,338,494	A→T	15.2%	intergenic (+114/+28)	PP_3812 → / ← PP_5632	lipase/allo‑isoleucine metabolism protein
RA	4,344,302	A→T	7.3%	intergenic (+33/‑123)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,304	C→T	7.0%	intergenic (+35/‑121)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,305	A→G	7.2%	intergenic (+36/‑120)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,310	C→G	7.8%	intergenic (+41/‑115)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,313	C→G	7.8%	intergenic (+44/‑112)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,318	C→T	7.2%	intergenic (+49/‑107)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,319	A→G	7.3%	intergenic (+50/‑106)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,344,321	A→T	7.3%	intergenic (+52/‑104)	PP_3817 → / → PP_3818	polyamine ABC transporter ATP‑binding protein/phosphate‑binding protein
RA	4,348,705	A→G	47.5%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,357,746	T→C	22.2%	intergenic (+92/‑162)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,357,747	G→A	21.6%	intergenic (+93/‑161)	PP_3831 → / → PP_3832	hypothetical protein/CsrA‑like carbon storage regulator
RA	4,375,091	A→G	8.9%	I70T (ATA→ACA)	PP_3850 ←	hypothetical protein
RA	4,405,314	C→T	18.2%	G83R (GGG→AGG)	PP_3886 ←	hypothetical protein
RA	4,405,320	T→C	17.4%	M81V (ATG→GTG)	PP_3886 ←	hypothetical protein
RA	4,405,321	G→A	17.4%	H80H (CAC→CAT)	PP_3886 ←	hypothetical protein
RA	4,405,327	A→G	16.3%	P78P (CCT→CCC)	PP_3886 ←	hypothetical protein
RA	4,437,240	G→C	8.0%	V134L (GTG→CTG) ‡	PP_3932 →	diguanylate cyclase
RA	4,437,242	G→C	8.7%	V134V (GTG→GTC) ‡	PP_3932 →	diguanylate cyclase
RA	4,437,245	G→C	7.9%	A135A (GCG→GCC)	PP_3932 →	diguanylate cyclase
RA	4,437,248	G→C	7.9%	A136A (GCG→GCC)	PP_3932 →	diguanylate cyclase
RA	4,437,250	G→C	7.9%	S137T (AGC→ACC)	PP_3932 →	diguanylate cyclase
RA	4,442,628	C→G	11.1%	intergenic (‑98/+40)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,442,629	C→G	11.1%	intergenic (‑99/+39)	nicP‑II ← / ← nicT	porin‑like protein/metabolite transport protein NicT
RA	4,442,717	A→G	6.3%	L422P (CTC→CCC)	nicT ←	metabolite transport protein NicT
RA	4,460,087	T→C	6.3%	L371S (TTG→TCG)	trkH‑I →	potassium transporter
RA	4,475,587	A→T	6.1%	intergenic (‑52/+12)	PP_3964 ← / ← PP_3965	transposase/transposase
RA	4,475,588	A→T	6.1%	intergenic (‑53/+11)	PP_3964 ← / ← PP_3965	transposase/transposase
RA	4,477,206	A→G	8.5%	P262P (CCT→CCC)	PP_3968 ←	sensor histidine kinase
RA	4,479,900	T→C	7.8%	V12A (GTA→GCA) ‡	PP_3971 →	hypothetical protein
RA	4,479,901	A→T	9.0%	V12V (GTA→GTT) ‡	PP_3971 →	hypothetical protein
RA	4,479,902	G→A	7.3%	A13T (GCG→ACG)	PP_3971 →	hypothetical protein
RA	4,520,454	A→T	11.8%	intergenic (+45/+27)	cspD → / ← icd	DNA replication inhibitor/NADP(+)‑specific isocitrate dehydrogenase
RA	4,531,365	C→A	6.1%	R402S (CGC→AGC) ‡	topB →	DNA topoisomerase III
RA	4,531,367	C→A	6.1%	R402R (CGC→CGA) ‡	topB →	DNA topoisomerase III
RA	4,531,370	T→G	6.1%	Y403* (TAT→TAG)	topB →	DNA topoisomerase III
RA	4,531,372	T→G	6.1%	L404R (CTG→CGG)	topB →	DNA topoisomerase III
RA	4,535,655	A→C	7.4%	intergenic (+182/‑633)	PP_4022 → / → PP_4024	hypothetical protein/transposase
RA	4,535,661	T→C	8.9%	intergenic (+188/‑627)	PP_4022 → / → PP_4024	hypothetical protein/transposase
RA	4,548,652	G→T	7.1%	A322S (GCC→TCC) ‡	pydB →	bifunctional D‑hydantoinase/dihydropyrimidinase
RA	4,548,654	C→G	6.9%	A322A (GCC→GCG) ‡	pydB →	bifunctional D‑hydantoinase/dihydropyrimidinase
RA	4,548,656	A→C	6.9%	E323A (GAG→GCG)	pydB →	bifunctional D‑hydantoinase/dihydropyrimidinase
RA	4,563,133	C→A	5.4%	R243L (CGG→CTG)	vgrG‑III ←	type VI secretion system protein
RA	4,570,537	T→A	9.5%	L134Q (CTG→CAG)	treY →	maltooligosyl trehalose synthase
RA	4,570,540	T→A	9.6%	L135Q (CTG→CAG)	treY →	maltooligosyl trehalose synthase
RA	4,580,682	Δ1 bp	6.9%	coding (2746/3321 nt)	treSB ←	bifunctional trehalose synthase B/maltokinase
RA	4,586,030	2 bp→TC	100%	intergenic (+113/+101)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,033:1	+G	100%	intergenic (+116/+99)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,586,056:1	+C	100%	intergenic (+139/+76)	PP_4061 → / ← PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
RA	4,597,751	C→A	9.4%	Q686H (CAG→CAT) ‡	PP_4071 ←	membrane protein
RA	4,597,752	T→A	9.4%	Q686L (CAG→CTG) ‡	PP_4071 ←	membrane protein
RA	4,597,755	T→A	9.0%	K685M (AAG→ATG) ‡	PP_4071 ←	membrane protein
RA	4,597,756	T→G	11.0%	K685Q (AAG→CAG) ‡	PP_4071 ←	membrane protein
RA	4,606,362	G→A	7.5%	L16L (CTG→CTA)	PP_4078 →	hypothetical protein
RA	4,625,502	G→A	7.3%	intergenic (+4095/+469)	PP_5654 → / ← PP_4091	phosphotriesterase/transposase
RA	4,634,356	T→A	7.1%	D252V (GAC→GTC)	uvrC ←	UvrABC system protein C
RA	4,640,827	C→G	6.0%	V326L (GTG→CTG)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,640,830	T→G	5.9%	S325R (AGC→CGC)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,640,832	A→T	5.9%	L324Q (CTG→CAG)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,640,834	C→A	5.8%	A323A (GCG→GCT)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,640,837	C→G	5.6%	Q322H (CAG→CAC)	gabP‑IV ←	gamma‑aminobutyrate permease
RA	4,659,730	G→C	5.3%	E30Q (GAG→CAG)	nuoF →	NADH‑quinone oxidoreductase subunit F
RA	4,659,737	T→A	5.2%	V32D (GTC→GAC)	nuoF →	NADH‑quinone oxidoreductase subunit F
RA	4,664,686	C→A	7.7%	T280N (ACC→AAC)	nuoH →	NADH‑quinone oxidoreductase subunit H
RA	4,665,299	G→A	7.6%	G145S (GGC→AGC)	nuoI →	NADH‑quinone oxidoreductase subunit I
RA	4,669,731	G→C	7.4%	T21T (ACG→ACC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,734	G→C	7.4%	V22V (GTG→GTC)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,669,744	C→G	7.1%	L26V (CTG→GTG)	nuoN →	NADH‑quinone oxidoreductase subunit N
RA	4,672,933	C→A	5.7%	V26L (GTG→TTG)	PP_4136 ←	LuxR family transcriptional regulator
RA	4,672,934	T→G	5.8%	Q25H (CAA→CAC)	PP_4136 ←	LuxR family transcriptional regulator
RA	4,721,633	C→T	11.1%	intergenic (‑38/+26)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,634	G→T	11.1%	intergenic (‑39/+25)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,635	A→C	10.6%	intergenic (‑40/+24)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,721,636	A→G	10.6%	intergenic (‑41/+23)	PP_4178 ← / ← htpG	dienelactone hydrolase family protein/chaperone protein HtpG
RA	4,728,876	G→A	6.6%	G320G (GGC→GGT)	sucC ←	bifunctional succinyl‑CoA synthetase subunit beta/glutaryl‑CoA synthetase subunit beta
RA	4,731,126	A→G	8.5%	V106V (GTT→GTC) ‡	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,731,127	A→T	8.5%	V106D (GTT→GAT) ‡	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,731,128	C→T	8.3%	V106I (GTT→ATT) ‡	lpdG ←	dihydrolipoyl dehydrogenase
RA	4,740,805	Δ1 bp	100%	intergenic (+42/+711)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,816	T→G	100%	intergenic (+53/+700)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,740,819	2 bp→CT	100%	intergenic (+56/+696)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,229	A→C	100%	intergenic (+466/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,231	C→G	100%	intergenic (+468/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,234	C→T	100%	intergenic (+471/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,236	2 bp→TG	100%	intergenic (+473/+279)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,239	A→G	100%	intergenic (+476/+277)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,243	3 bp→TGC	100%	intergenic (+480/+271)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,255	C→T	100%	intergenic (+492/+261)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,257	A→C	100%	intergenic (+494/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,260	2 bp→GC	100%	intergenic (+497/+255)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,263	A→C	100%	intergenic (+500/+253)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,272	A→G	100%	intergenic (+509/+244)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	100%	intergenic (+511/+242)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	G→C	100%	intergenic (+513/+240)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,278	C→T	100%	intergenic (+515/+238)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283:1	+T	100%	intergenic (+520/+233)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,289	C→G	100%	intergenic (+526/+227)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,292	C→T	100%	intergenic (+529/+224)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,294	C→G	100%	intergenic (+531/+222)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,296	A→C	100%	intergenic (+533/+220)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298	C→T	100%	intergenic (+535/+218)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,742,249	G→A	6.5%	A29V (GCA→GTA)	PP_4196 ←	hypothetical protein
RA	4,767,818	C→T	13.8%	intergenic (+32/+37)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,767,819	A→G	13.8%	intergenic (+33/+36)	fpvA → / ← PP_4218	TonB‑dependent outer membrane ferripyoverdine receptor FpvA/lipase/esterase family protein
RA	4,782,594	C→T	9.1%	G1574S (GGC→AGC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,782,601	C→G	8.5%	P1571P (CCG→CCC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,782,608	A→G	8.5%	L1569P (CTC→CCC)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,110	G→A	10.1%	P1402S (CCG→TCG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,112	A→G	10.1%	V1401A (GTC→GCC) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,113	C→T	10.1%	V1401I (GTC→ATC) ‡	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,783,115	T→C	10.1%	E1400G (GAG→GGG)	pvdJ ←	non‑ribosomal peptide synthetase
RA	4,805,118	T→A	12.0%	K925M (AAG→ATG)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,805,123	G→A	12.3%	I923I (ATC→ATT) ‡	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,805,124	A→T	11.9%	I923N (ATC→AAC) ‡	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,805,125	T→C	12.2%	I923V (ATC→GTC) ‡	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,805,130	T→A	13.2%	H921L (CAT→CTT)	PP_4234 ←	bifunctional aldehyde oxidase/xanthine dehydrogenase
RA	4,809,869	T→C	6.3%	V475A (GTG→GCG)	dsbD‑II →	thiol/disulfide interchange protein 2
RA	4,812,183	C→T	14.3%	intergenic (+103/‑290)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,184	A→T	14.6%	intergenic (+104/‑289)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,812,185	A→G	14.6%	intergenic (+105/‑288)	PP_4238 → / → PP_5665	hypothetical protein/McbA family microcin B17‑like processing protein
RA	4,850,158	C→T	9.6%	intergenic (+75/‑112)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,850,159	C→G	9.6%	intergenic (+76/‑111)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,850,160	A→G	10.6%	intergenic (+77/‑110)	hemN → / → fnrA	oxygen‑independent coproporphyrinogen III dehydrogenase/DNA‑binding transcriptional dual regulator
RA	4,882,207:1	+A	7.4%	coding (1290/1356 nt)	uacT →	uric acid permease
RA	4,882,212	Δ1 bp	8.0%	coding (1295/1356 nt)	uacT →	uric acid permease
RA	4,884,963	C→A	8.1%	E139* (GAA→TAA)	yedI ←	inner membrane protein
RA	4,886,165	A→G	13.3%	intergenic (+44/+79)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,166	T→A	12.9%	intergenic (+45/+78)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,168	A→T	14.3%	intergenic (+47/+76)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,174	T→A	12.5%	intergenic (+53/+70)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,175	G→C	12.2%	intergenic (+54/+69)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,179	G→C	11.8%	intergenic (+58/+65)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,181	A→G	12.1%	intergenic (+60/+63)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,183	G→C	12.1%	intergenic (+62/+61)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,184	T→A	12.6%	intergenic (+63/+60)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,190	A→T	16.7%	intergenic (+69/+54)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,192	T→A	16.7%	intergenic (+71/+52)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,886,193	C→T	17.4%	intergenic (+72/+51)	PP_4295 → / ← PP_4296	TetR family transcriptional regulator/hypothetical protein
RA	4,889,710	G→A	8.1%	A2T (GCT→ACT)	glxR →	2‑hydroxy‑3‑oxopropionate reductase
RA	4,895,712	T→A	7.0%	L56Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,895,715	T→A	7.0%	L57Q (CTG→CAG)	PP_4304 →	VIC family cation transporter
RA	4,900,065	A→G	13.5%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,069	G→A	11.4%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,070	T→C	11.3%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,074	C→T	11.4%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,906,846	A→G	8.4%	intergenic (‑49/+4)	PP_4315 ← / ← PP_4316	epimerase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein
RA	4,909,949	C→G	7.0%	intergenic (+342/+137)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,909,950	C→G	7.2%	intergenic (+343/+136)	PP_4318 → / ← PP_4319	transposase/hypothetical protein
RA	4,912,813	A→T	10.6%	L629Q (CTG→CAG)	ccmF ←	holocytochrome c synthetase
RA	4,912,816	A→T	11.8%	L628Q (CTG→CAG)	ccmF ←	holocytochrome c synthetase
RA	4,912,822	C→G	7.1%	G626A (GGC→GCC)	ccmF ←	holocytochrome c synthetase
RA	4,918,174	C→G	10.9%	L191L (CTC→CTG)	PP_4328 →	hypothetical protein
RA	4,918,256	A→G	6.6%	N219D (AAC→GAC)	PP_4328 →	hypothetical protein
RA	4,922,688	T→G	7.0%	E30A (GAG→GCG)	PP_4331 ←	hypothetical protein
RA	4,922,691	C→A	7.1%	R29L (CGC→CTC)	PP_4331 ←	hypothetical protein
RA	4,950,972	T→G	17.1%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,950,973	C→A	15.0%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,958,594	T→G	9.5%	M36L (ATG→CTG)	fliG ←	flagellar motor switch protein
RA	4,958,599	C→T	9.2%	R34Q (CGG→CAG)	fliG ←	flagellar motor switch protein
RA	4,958,602	A→G	8.6%	L33P (CTG→CCG)	fliG ←	flagellar motor switch protein
RA	4,958,607	C→A	8.1%	Q31H (CAG→CAT)	fliG ←	flagellar motor switch protein
JC	4,980,585	+GGC	100%	intergenic (‑24/+44)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,589	T→A	8.2%	intergenic (‑28/+40)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,590	T→A	8.2%	intergenic (‑29/+39)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,980,591	T→A	8.1%	intergenic (‑30/+38)	PP_4387 ← / ← flgE	hypothetical protein/flagellar hook protein FlgE
RA	4,991,234	A→C	8.0%	intergenic (‑103/+126)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,235	G→A	8.3%	intergenic (‑104/+125)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,238	T→C	8.5%	intergenic (‑107/+122)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	4,991,239	G→T	8.6%	intergenic (‑108/+121)	PP_4399 ← / ← bkdR	glutamine synthetase/Bkd operon transcriptional regulator
RA	5,000,740	T→C	12.2%	intergenic (+210/‑1476)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,000,741	G→A	12.9%	intergenic (+211/‑1475)	PP_4407 → / → PP_4409	gamma‑aminobutyrate transporter/site‑specific recombinase
RA	5,028,905	G→A	6.5%	K391K (AAG→AAA)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,916	A→G	6.5%	K395R (AAG→AGG)	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,918	G→C	6.3%	D396H (GAC→CAC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,028,919	A→C	6.3%	D396A (GAC→GCC) ‡	PP_4432 →	Xaa‑Pro aminopeptidase
RA	5,030,748	A→G	11.1%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,030,751	C→T	11.9%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,041,249	T→A	6.8%	intergenic (+227/‑435)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,041,252	T→A	6.8%	intergenic (+230/‑432)	PP_5680 → / → PP_4447	Cro/CI family transcriptional regulator/hypothetical protein
RA	5,044,739	A→G	7.8%	intergenic (+45/+223)	PP_4448 → / ← PP_5681	hypothetical protein/hypothetical protein
RA	5,044,759	C→G	7.4%	intergenic (+65/+203)	PP_4448 → / ← PP_5681	hypothetical protein/hypothetical protein
RA	5,078,877	G→C	6.9%	intergenic (‑122/+275)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,082,651	C→G	9.4%	A539P (GCG→CCG)	alaS ←	alanine‑‑tRNA ligase
RA	5,082,653	C→G	8.1%	G538A (GGT→GCT)	alaS ←	alanine‑‑tRNA ligase
RA	5,084,580	C→T	13.7%	intergenic (‑315/+70)	alaS ← / ← astE	alanine‑‑tRNA ligase/succinylglutamate desuccinylase
RA	5,087,490	G→A	7.5%	S440S (AGC→AGT)	astD ←	N‑succinylglutamate 5‑semialdehyde dehydrogenase
RA	5,092,574	G→C	10.9%	intergenic (‑270/+67)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,092,577	G→C	10.3%	intergenic (‑273/+64)	astC ← / ← PP_4482	acetylornithine aminotransferase/AraC family transcriptional regulator
RA	5,116,500	T→G	6.0%	L29R (CTG→CGG)	PP_4502 →	hypothetical protein
RA	5,116,504	C→G	6.1%	A30A (GCC→GCG)	PP_4502 →	hypothetical protein
RA	5,116,506	C→G	6.3%	A31G (GCC→GGC)	PP_4502 →	hypothetical protein
RA	5,116,508	C→G	6.3%	R32G (CGC→GGC)	PP_4502 →	hypothetical protein
RA	5,116,512	C→A	6.3%	P33Q (CCG→CAG)	PP_4502 →	hypothetical protein
RA	5,120,362	C→T	8.5%	A2V (GCG→GTG)	trkH‑II →	potassium transporter
RA	5,120,373	T→C	8.7%	L6L (TTA→CTA)	trkH‑II →	potassium transporter
RA	5,131,519	T→C	7.7%	intergenic (‑116/‑128)	recQ ← / → PP_4517	ATP‑dependent DNA 3'‑5' helicase/hypothetical protein
RA	5,134,325	A→T	10.2%	intergenic (+48/+15)	tolC → / ← PP_4520	agglutination protein/hypothetical protein
RA	5,148,320	C→T	8.7%	A74T (GCC→ACC)	PP_5695 ←	hypothetical protein
RA	5,156,328	A→G	7.6%	S263G (AGC→GGC)	PP_4539 →	LysR family transcriptional regulator
RA	5,160,633	A→G	10.3%	L141P (CTG→CCG)	PP_4543 ←	hypothetical protein
RA	5,160,637	G→C	10.6%	R140G (CGG→GGG)	PP_4543 ←	hypothetical protein
RA	5,160,638	T→A	10.6%	P139P (CCA→CCT) ‡	PP_4543 ←	hypothetical protein
RA	5,160,639	G→C	11.3%	P139R (CCA→CGA) ‡	PP_4543 ←	hypothetical protein
RA	5,160,643	C→T	11.4%	G138S (GGC→AGC)	PP_4543 ←	hypothetical protein
RA	5,173,248	G→C	10.0%	intergenic (‑289/+43)	fadD‑I ← / ← fadD‑II	long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase
RA	5,182,059	G→T	13.2%	intergenic (‑117/+37)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,065	T→G	14.8%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,066	C→A	14.7%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,746	C→T	8.3%	A79V (GCT→GTT) ‡	PP_4562 →	hypothetical protein
RA	5,182,747	T→G	8.3%	A79A (GCT→GCG) ‡	PP_4562 →	hypothetical protein
RA	5,182,748	C→A	8.3%	H80N (CAC→AAC) ‡	PP_4562 →	hypothetical protein
RA	5,182,749	A→G	8.3%	H80R (CAC→CGC) ‡	PP_4562 →	hypothetical protein
RA	5,182,757	C→G	8.3%	Q83E (CAA→GAA)	PP_4562 →	hypothetical protein
RA	5,190,621	G→A	7.1%	Q265* (CAG→TAG)	cysK ←	cysteine synthase A
RA	5,194,887	T→G	19.2%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,888	C→A	19.3%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,199,645	G→C	11.3%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
RA	5,201,830	C→T	8.9%	A46V (GCC→GTC)	PP_4583 →	putative Peptidase
RA	5,201,833	A→G	8.9%	D47G (GAC→GGC)	PP_4583 →	putative Peptidase
RA	5,230,033	G→C	6.1%	P61R (CCG→CGG)	PP_4607 ←	transmembrane sensor
RA	5,232,054	C→G	11.1%	A214A (GCG→GCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,232,057	C→G	10.9%	P213P (CCG→CCC)	PP_4610 ←	PepSY‑associated TM helix domain‑containing protein
RA	5,253,883	G→A	10.7%	R251C (CGC→TGC)	PP_4630 ←	MerR family transcriptional regulator
RA	5,253,887	G→C	12.5%	F249L (TTC→TTG)	PP_4630 ←	MerR family transcriptional regulator
RA	5,253,891	T→C	10.9%	H248R (CAC→CGC)	PP_4630 ←	MerR family transcriptional regulator
RA	5,262,734	G→A	7.8%	A303T (GCC→ACC)	PP_4638 →	methylenetetrahydrofolate reductase
RA	5,266,853	G→A	8.1%	R30H (CGC→CAC)	PP_4642 →	cyclic diguanosine monophosphate‑binding protein
RA	5,283,025	C→A	6.6%	D184E (GAC→GAA)	ypfJ →	zinc metalloprotease
RA	5,283,026	T→G	6.5%	F185V (TTC→GTC)	ypfJ →	zinc metalloprotease
RA	5,299,087	G→C	6.8%	P339A (CCG→GCG)	recD ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
RA	5,305,657	A→G	6.7%	L532S (TTG→TCG)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,305,662	C→T	6.4%	L530L (CTG→CTA) ‡	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,305,663	A→G	6.3%	L530P (CTG→CCG) ‡	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,305,668	C→T	6.1%	A528A (GCG→GCA)	recC ←	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit
RA	5,313,276	C→G	11.7%	intergenic (‑595/+119)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,313,279	C→G	11.4%	intergenic (‑598/+116)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,320,760	C→A	6.4%	G52V (GGT→GTT)	PP_4682 ←	TPR repeat‑containing protein
RA	5,320,766	G→C	7.8%	S50W (TCG→TGG)	PP_4682 ←	TPR repeat‑containing protein
RA	5,320,772	T→G	6.7%	N48T (AAC→ACC)	PP_4682 ←	TPR repeat‑containing protein
RA	5,338,050	C→G	9.8%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,053	C→G	9.6%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,339,132	C→G	7.4%	H120Q (CAC→CAG)	pcnB →	poly(A) polymerase
RA	5,350,084	C→T	8.0%	A853V (GCC→GTC) ‡	PP_4704 →	hypothetical protein
RA	5,350,085	C→G	7.9%	A853A (GCC→GCG) ‡	PP_4704 →	hypothetical protein
RA	5,350,086	A→G	7.8%	T854A (ACC→GCC)	PP_4704 →	hypothetical protein
RA	5,351,342	A→C	7.4%	intergenic (+21/+55)	PP_4706 → / ← PP_4707	hypothetical protein/OsmY‑like protein
RA	5,364,380	A→G	9.1%	V85A (GTG→GCG)	folP ←	dihydropteroate synthase
RA	5,375,631	T→A	8.2%	intergenic (‑191/+8)	dnaJ ← / ← dnaK	chaperone protein DnaJ/chaperone protein DnaK
RA	5,381,267	T→C	7.9%	intergenic (+32/+33)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,268	T→A	7.9%	intergenic (+33/+32)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,381,269	G→A	7.8%	intergenic (+34/+31)	bamE → / ← PP_4732	outer membrane protein assembly factor BamE/hypothetical protein
RA	5,389,504	A→G	14.8%	intergenic (+203/‑117)	dld2 → / → PP_4738	D‑lactate dehydrogenase/hypothetical protein
RA	5,389,506	C→T	15.4%	intergenic (+205/‑115)	dld2 → / → PP_4738	D‑lactate dehydrogenase/hypothetical protein
RA	5,390,101	T→A	7.7%	intergenic (+190/‑532)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,583	C→A	6.4%	intergenic (+672/‑50)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,585	C→G	6.7%	intergenic (+674/‑48)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,587	T→G	6.3%	intergenic (+676/‑46)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,415,443	C→T	6.0%	A112T (GCC→ACC)	gabP‑V ←	gamma‑aminobutyrate permease
RA	5,452,093	G→A	6.5%	L208L (CTG→CTA)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,097	C→A	5.8%	L210M (CTG→ATG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,102	G→C	6.9%	A211A (GCG→GCC)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,105	C→T	6.7%	L212L (CTC→CTT)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,106	A→G	6.7%	K213E (AAG→GAG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,109	G→C	6.9%	G214R (GGC→CGC)	lnt →	apolipoprotein N‑acyltransferase
RA	5,452,114	T→G	8.2%	H215Q (CAT→CAG)	lnt →	apolipoprotein N‑acyltransferase
RA	5,458,892:1	+A	6.6%	intergenic (+17/‑45)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,458,898	Δ1 bp	6.4%	intergenic (+23/‑39)	leuS → / → PP_4795	leucine‑‑tRNA ligase/lipoprotein
RA	5,472,156	T→A	8.3%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,157	T→A	8.3%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,538	A→G	7.7%	M94T (ATG→ACG)	rsfS ←	ribosomal silencing factor RsfS
RA	5,472,541	T→C	7.9%	H93R (CAC→CGC) ‡	rsfS ←	ribosomal silencing factor RsfS
RA	5,472,542	G→A	7.9%	H93Y (CAC→TAC) ‡	rsfS ←	ribosomal silencing factor RsfS
RA	5,472,545	C→T	8.0%	V92M (GTG→ATG)	rsfS ←	ribosomal silencing factor RsfS
RA	5,477,000	G→A	79.1%	W410* (TGG→TGA)	PP_4813 →	PAP2 family protein/DedA family protein
RA	5,482,292	A→G	6.3%	Q73R (CAG→CGG)	dusB →	tRNA dihydrouridine synthase DusB
RA	5,503,135	C→A	8.8%	L29M (CTG→ATG) ‡	oprC →	copper receptor OprC
RA	5,503,136	T→G	8.7%	L29R (CTG→CGG) ‡	oprC →	copper receptor OprC
RA	5,503,142	C→G	9.2%	A31G (GCC→GGC)	oprC →	copper receptor OprC
RA	5,532,750	C→T	9.5%	G145D (GGC→GAC)	braD ←	high‑affinity branched‑chain amino acid ABC transporter permease BraD
RA	5,532,754	A→G	6.3%	S144P (TCC→CCC)	braD ←	high‑affinity branched‑chain amino acid ABC transporter permease BraD
RA	5,532,759	A→G	6.1%	V142A (GTC→GCC)	braD ←	high‑affinity branched‑chain amino acid ABC transporter permease BraD
RA	5,541,720	T→A	8.8%	I327F (ATC→TTC)	dnaB ←	replicative DNA helicase
RA	5,541,721	T→A	7.8%	E326D (GAA→GAT)	dnaB ←	replicative DNA helicase
RA	5,541,730	C→A	8.9%	E323D (GAG→GAT)	dnaB ←	replicative DNA helicase
RA	5,541,734	C→T	6.7%	R322H (CGT→CAT)	dnaB ←	replicative DNA helicase
JC	5,555,608	+GCC	100%	intergenic (‑84/+87)	PP_4887 ← / ← PP_4888	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	5,562,268	T→C	6.7%	Q206R (CAG→CGG)	hflK ←	integral membrane ATP‑dependent zinc metallopeptidase
RA	5,574,789	C→T	6.8%	D169N (GAC→AAC)	motB ←	flagellar motor rotation protein
RA	5,574,790	G→C	6.8%	F168L (TTC→TTG) ‡	motB ←	flagellar motor rotation protein
RA	5,574,791	A→G	6.9%	F168S (TTC→TCC) ‡	motB ←	flagellar motor rotation protein
RA	5,601,811:1	+C	6.8%	coding (1671/5418 nt)	PP_4924 ←	subtilase family serine protease
RA	5,601,818	Δ1 bp	7.8%	coding (1664/5418 nt)	PP_4924 ←	subtilase family serine protease
RA	5,623,395	G→T	9.4%	R115R (CGG→AGG)	PP_4941 ←	hypothetical protein
RA	5,623,396	A→C	9.0%	P114P (CCT→CCG)	PP_4941 ←	hypothetical protein
RA	5,627,312	C→T	6.9%	V64I (GTC→ATC)	PP_4944 ←	carbamoyltransferase
RA	5,641,455	C→G	9.3%	S373C (TCC→TGC)	PP_4951 →	EmrB/QacA family drug resistance transporter
RA	5,646,266	A→T	6.8%	D540V (GAC→GTC)	PP_4954 →	membrane protein
RA	5,651,374	T→G	14.8%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,377	C→A	13.3%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,657,737	A→T	7.4%	intergenic (‑43/‑209)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,657,745	A→T	6.0%	intergenic (‑51/‑201)	tktA ← / → sahR	transketolase A/methionine metabolism transcriptional regulator
RA	5,660,182	G→T	7.9%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,185	A→C	7.1%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,667,238	T→A	6.5%	intergenic (+16/+55)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,239	T→A	6.6%	intergenic (+17/+54)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,258	G→T	8.9%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,259	A→C	9.1%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,674,750:1	+G	100%	intergenic (+112/+28)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,674,753	G→C	100%	intergenic (+115/+25)	rhlE‑II → / ← yceI	ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor
RA	5,679,138	A→G	7.3%	D255G (GAC→GGC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,142	G→T	7.3%	E256D (GAG→GAT)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,143	A→C	7.3%	I257L (ATC→CTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
RA	5,679,147	C→T	7.1%	A258V (GCC→GTC)	bioA →	adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA
JC	5,681,415	+CGGG	100%	intergenic (‑133/+71)	PP_4986 ← / ← PP_4987	hemolysin III family channel protein/putative Chemotaxis protein
RA	5,706,587	T→A	5.2%	L202Q (CTG→CAG)	PP_5009 →	hypothetical protein
RA	5,707,112	T→C	6.3%	L377P (CTG→CCG)	PP_5009 →	hypothetical protein
RA	5,707,114	G→A	6.4%	G378S (GGC→AGC)	PP_5009 →	hypothetical protein
RA	5,722,966	C→A	6.1%	V85L (GTG→TTG)	PP_5023 ←	amino acid ABC transporter permease
RA	5,722,967	T→G	6.2%	Q84H (CAA→CAC)	PP_5023 ←	amino acid ABC transporter permease
RA	5,751,725	A→G	9.2%	intergenic (‑163/‑308)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,729	G→T	9.0%	intergenic (‑167/‑304)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,730	G→T	9.0%	intergenic (‑168/‑303)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,735	A→C	9.7%	intergenic (‑173/‑298)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,736	A→C	9.7%	intergenic (‑174/‑297)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,740	C→T	9.6%	intergenic (‑178/‑293)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,751,746	A→C	9.4%	intergenic (‑184/‑287)	thiI ← / → glnA	tRNA sulfurtransferase/glutamine synthetase
RA	5,753,485	T→G	6.4%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,486	C→A	6.4%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,785,963	T→G	6.5%	F323V (TTC→GTC) ‡	PP_5068 →	hypothetical protein
RA	5,785,965	C→A	6.6%	F323L (TTC→TTA) ‡	PP_5068 →	hypothetical protein
RA	5,785,967	T→A	6.4%	L324Q (CTG→CAG)	PP_5068 →	hypothetical protein
RA	5,785,970	C→G	6.8%	P325R (CCG→CGG)	PP_5068 →	hypothetical protein
RA	5,785,973	T→A	6.7%	L326Q (CTG→CAG)	PP_5068 →	hypothetical protein
RA	5,785,975	T→G	6.8%	Y327D (TAC→GAC) ‡	PP_5068 →	hypothetical protein
RA	5,785,977	C→A	7.7%	Y327* (TAC→TAA) ‡	PP_5068 →	hypothetical protein
RA	5,789,021	T→G	13.6%	C60G (TGC→GGC) ‡	ynfM →	efflux transporter
RA	5,789,022	G→C	13.3%	C60S (TGC→TCC) ‡	ynfM →	efflux transporter
RA	5,789,023	C→A	13.5%	C60* (TGC→TGA) ‡	ynfM →	efflux transporter
RA	5,789,421	T→C	7.5%	V193A (GTC→GCC)	ynfM →	efflux transporter
RA	5,792,221	G→A	8.5%	G370G (GGC→GGT)	gltD ←	glutamate synthase subunit beta
RA	5,798,198	T→C	9.6%	intergenic (‑299/+75)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,201	G→A	9.5%	intergenic (‑302/+72)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,798,206	A→G	8.7%	intergenic (‑307/+67)	gltB ← / ← PP_5077	L‑glutamate synthase subunit alpha/hypothetical protein
RA	5,810,350	G→A	9.7%	D81D (GAC→GAT) ‡	rpmE ←	50S ribosomal protein L31
RA	5,810,351	T→A	9.5%	D81V (GAC→GTC) ‡	rpmE ←	50S ribosomal protein L31
RA	5,810,352	C→G	9.5%	D81H (GAC→CAC) ‡	rpmE ←	50S ribosomal protein L31
RA	5,810,358	C→A	8.7%	V79F (GTT→TTT)	rpmE ←	50S ribosomal protein L31
RA	5,810,359	T→G	9.1%	K78N (AAA→AAC)	rpmE ←	50S ribosomal protein L31
RA	5,840,665	G→A	7.6%	A206V (GCG→GTG)	PP_5119 ←	TetR family transcriptional regulator
RA	5,841,898	C→G	8.9%	T156R (ACG→AGG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,904	C→T	9.0%	A158V (GCG→GTG) ‡	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,905	G→C	9.1%	A158A (GCG→GCC) ‡	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,906	A→G	8.8%	T159A (ACG→GCG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,912	C→G	9.1%	L161V (CTG→GTG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,841,919	T→C	5.9%	L163P (CTG→CCG)	calB →	coniferyl aldehyde dehydrogenase
RA	5,849,936	C→G	6.1%	P214R (CCG→CGG)	ilvD →	dihydroxy‑acid dehydratase
RA	5,850,729	C→T	6.8%	Y478Y (TAC→TAT)	ilvD →	dihydroxy‑acid dehydratase
RA	5,851,171	T→A	6.8%	intergenic (+34/+34)	ilvD → / ← PP_5129	dihydroxy‑acid dehydratase/hypothetical protein
RA	5,862,538	C→A	7.3%	G84V (GGC→GTC)	fbpC ←	ABC transporter ATP‑binding protein
RA	5,868,055	A→T	5.6%	L170* (TTG→TAG)	lgt ←	prolipoprotein diacylglyceryl transferase
RA	5,882,969	C→T	7.7%	G75G (GGG→GGA)	PP_5156 ←	hypothetical protein
RA	5,883,595	C→G	11.3%	A60G (GCC→GGC)	PP_5157 →	hypothetical protein
RA	5,884,980	T→G	6.8%	A53A (GCA→GCC) ‡	PP_5159 ←	hypothetical protein
RA	5,884,981	G→C	6.6%	A53G (GCA→GGA) ‡	PP_5159 ←	hypothetical protein
RA	5,884,982	C→A	6.9%	A53S (GCA→TCA) ‡	PP_5159 ←	hypothetical protein
RA	5,891,209	C→G	8.2%	A137P (GCG→CCG)	plpB ←	NLPA lipoprotein
RA	5,891,210	A→C	7.7%	R136R (CGT→CGG)	plpB ←	NLPA lipoprotein
RA	5,891,213	G→T	7.7%	G135G (GGC→GGA) ‡	plpB ←	NLPA lipoprotein
RA	5,891,214	C→G	7.8%	G135A (GGC→GCC) ‡	plpB ←	NLPA lipoprotein
RA	5,899,957	C→G	5.3%	V311L (GTG→CTG)	PP_5173 ←	RND family transporter
RA	5,899,958	C→G	5.3%	Q310H (CAG→CAC)	PP_5173 ←	RND family transporter
RA	5,903,164	G→T	27.1%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,165	A→C	30.9%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,930,172	G→A	6.0%	G72G (GGC→GGT)	visC ←	ubiquinone biosynthesis oxidoreductase
RA	5,948,682	T→A	8.5%	intergenic (‑63/+19)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,948,683	T→A	8.5%	intergenic (‑64/+18)	PP_mr62 ← / ← trxA	Pseudomon‑Rho regulatory region/thioredoxin I
RA	5,951,325	C→T	6.9%	P544P (CCG→CCA)	ppk ←	polyphosphate kinase
RA	5,958,935	A→G	5.5%	Q780R (CAA→CGA)	cyaA →	adenylate cyclase
RA	5,960,282	G→C	7.8%	P8A (CCG→GCG)	PP_5224 ←	hypothetical protein
RA	5,960,290	T→C	7.5%	Q5R (CAG→CGG)	PP_5224 ←	hypothetical protein
RA	5,961,628	T→A	9.1%	I175N (ATT→AAT)	lysA‑II →	diaminopimelate decarboxylase
RA	5,961,631	C→G	8.1%	A176G (GCC→GGC)	lysA‑II →	diaminopimelate decarboxylase
RA	5,966,332	A→T	11.1%	intergenic (‑401/+29)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,333	A→T	10.7%	intergenic (‑402/+28)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,966,342	A→T	7.7%	intergenic (‑411/+19)	PP_5232 ← / ← amtB	hypothetical protein/ammonium transporter AmtB
RA	5,970,525	A→G	7.0%	W257R (TGG→CGG)	PP_5236 ←	hypothetical protein
RA	5,970,526	G→C	7.0%	R256R (CGC→CGG)	PP_5236 ←	hypothetical protein
RA	5,976,577	A→G	7.4%	A126A (GCA→GCG)	yifB →	ATP‑dependent chelatase
RA	5,981,883	G→T	5.6%	W843L (TGG→TTG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,981,889	A→C	5.9%	Q845P (CAG→CCG)	PP_5242 →	GAF domain‑containing sensor histidine kinase
RA	5,984,442	G→A	12.1%	intergenic (+38/+51)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,444	T→C	12.3%	intergenic (+40/+49)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,449	T→C	11.1%	intergenic (+45/+44)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,455	G→A	10.2%	intergenic (+51/+38)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,984,479	A→G	8.5%	intergenic (+75/+14)	PP_5242 → / ← ycaC‑II	GAF domain‑containing sensor histidine kinase/putative hydrolase
RA	5,986,841	T→A	100%	intergenic (+121/‑78)	PP_5245 → / → kefB‑III	AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
RA	5,987,906	C→A	6.7%	L330M (CTG→ATG)	kefB‑III →	glutathione‑regulated potassium/H+ antiporter
RA	5,988,809	G→A	31.8%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,819	T→C	32.1%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,824	C→T	32.2%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,825	G→T	32.3%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,826	C→T	32.2%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,829	A→G	31.2%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,835	G→C	33.1%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,837	C→G	31.7%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,840	C→T	33.3%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,844	C→G	33.3%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,848	C→T	33.3%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,850	C→T	32.8%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,889	C→A	23.1%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,894	C→T	20.5%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,895	A→G	21.5%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,905	T→C	22.0%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,911	Δ1 bp	18.7%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,994,755	Δ1 bp	16.7%	coding (1482/1599 nt)	PP_5251 →	transporter
RA	5,994,761	G→C	15.0%	V496V (GTG→GTC)	PP_5251 →	transporter
RA	6,003,644	C→A	8.2%	G98V (GGC→GTC)	amaB ←	L‑piperidine‑6‑carboxylate dehydrogenase
RA	6,004,973	G→C	10.6%	intergenic (+11/‑165)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,987	T→G	7.3%	intergenic (+25/‑151)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,994	G→C	11.6%	intergenic (+32/‑144)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,004,997	A→T	11.0%	intergenic (+35/‑141)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,000	G→C	11.5%	intergenic (+38/‑138)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,007	C→A	9.9%	intergenic (+45/‑131)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,005,021	G→C	6.1%	intergenic (+59/‑117)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,006,243	C→T	10.8%	A369V (GCC→GTC)	ydcJ →	metalloprotein
RA	6,006,247	A→G	10.8%	A370A (GCA→GCG)	ydcJ →	metalloprotein
RA	6,006,248	C→T	10.8%	R371C (CGC→TGC)	ydcJ →	metalloprotein
RA	6,006,252	A→G	11.4%	D372G (GAC→GGC)	ydcJ →	metalloprotein
RA	6,013,836	G→A	16.0%	intergenic (+41/+69)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,838	A→G	16.0%	intergenic (+43/+67)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,013,885	T→C	100%	intergenic (+90/+20)	xpt → / ← PP_5266	xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein
RA	6,014,998	A→G	5.6%	M256T (ATG→ACG)	PP_5266 ←	acetyl‑CoA hydrolase family protein
RA	6,023,159	G→A	7.1%	intergenic (+74/+70)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,023,160	T→C	7.1%	intergenic (+75/+69)	PP_5273 → / ← PP_5274	oxidoreductase/hypothetical protein
RA	6,026,542	G→T	8.4%	V472L (GTG→TTG) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,544	G→T	7.4%	V472V (GTG→GTT) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,545	A→C	7.6%	K473Q (AAA→CAA) ‡	PP_5276 →	phospholipase D family protein
RA	6,026,547	A→C	7.6%	K473N (AAA→AAC) ‡	PP_5276 →	phospholipase D family protein
RA	6,051,670	T→G	11.0%	intergenic (+19/‑38)	ridA → / → PP_5304	aminoacrylate/iminopropionate hydrolase/deaminase/lipoprotein
RA	6,060,485	T→G	5.8%	intergenic (+121/+60)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,060,489	T→C	6.2%	intergenic (+125/+56)	PP_5311 → / ← PP_5312	signal transduction protein/hypothetical protein
RA	6,067,198	G→C	7.5%	intergenic (+14/‑160)	phoR → / → PP_5322	two‑component system sensor histidine kinase/metal ion transporter
RA	6,072,218	T→A	6.5%	I103F (ATC→TTC)	pstB‑II ←	phosphate ABC transporter ATP‑binding protein
RA	6,073,443	T→C	13.6%	P271P (CCA→CCG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,444	G→A	13.6%	P271L (CCA→CTA) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,447	T→C	13.8%	Q270R (CAG→CGG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,073,448	G→A	13.7%	Q270* (CAG→TAG) ‡	PP_5327 ←	phosphate ABC transporter permease
RA	6,075,747	G→C	6.9%	A272G (GCC→GGC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,076,091	G→T	6.0%	G157G (GGC→GGA)	PP_5328 ←	phosphate ABC transporter permease
RA	6,076,095	T→A	6.0%	N156I (AAT→ATT)	PP_5328 ←	phosphate ABC transporter permease
RA	6,076,099	A→C	5.9%	S155A (TCC→GCC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,084,198	G→A	9.3%	P175S (CCG→TCG)	PP_5337 ←	LysR family transcriptional regulator
RA	6,101,843	A→T	7.3%	E332V (GAA→GTA)	uvrD →	DNA‑dependent ATPase I/helicase II
RA	6,101,852	A→T	7.1%	Y335F (TAT→TTT) ‡	uvrD →	DNA‑dependent ATPase I/helicase II
RA	6,101,853	T→C	7.3%	Y335Y (TAT→TAC) ‡	uvrD →	DNA‑dependent ATPase I/helicase II
RA	6,111,003	C→T	9.4%	L169L (TTG→TTA) ‡	PP_5361 ←	protein P47K
RA	6,111,004	A→G	9.4%	L169S (TTG→TCG) ‡	PP_5361 ←	protein P47K
RA	6,111,006	A→T	9.4%	D168E (GAT→GAA) ‡	PP_5361 ←	protein P47K
RA	6,111,008	C→T	9.3%	D168N (GAT→AAT) ‡	PP_5361 ←	protein P47K
RA	6,111,009	A→G	9.5%	S167S (AGT→AGC)	PP_5361 ←	protein P47K
RA	6,120,858	G→T	8.7%	A431D (GCC→GAC) ‡	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,120,859	C→G	8.7%	A431P (GCC→CCC) ‡	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,120,860	A→C	8.8%	G430G (GGT→GGG)	PP_5371 ←	rubredoxin/rubredoxin reductase
RA	6,129,173	A→T	7.1%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,176	A→G	7.1%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,137,976	Δ1 bp	5.8%	coding (431/1254 nt)	czcC →	CzcC family metal RND transporter outer membrane protein
RA	6,143,488	C→A	6.5%	S23S (TCC→TCA)	cusF →	copper efflux protein
RA	6,172,004	T→G	6.7%	N100H (AAC→CAC)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,172,011	C→A	7.2%	V97V (GTG→GTT)	glmS ←	L‑glutamine/D‑fructose‑6‑phosphate aminotransferase
RA	6,174,708	G→T	9.4%	intergenic (‑70/+49)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon
RA	6,174,709	A→C	9.4%	intergenic (‑71/+48)	glmU ← / ← atpC	bifunctional N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/ATP synthase subunit epsilon

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	38445 =	64 (1.160)	5 (0.090)	5/244	NT	7.5%	coding (185/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
	?	NC_002947	38482 =	63 (1.190)					coding (148/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
*	?	NC_002947	= 50553	67 (1.210)	4 (0.070)	4/248	NT	5.8%	coding (97/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
	?	NC_002947	= 50589	65 (1.210)					coding (61/1251 nt)	czcB‑I	cobalt‑zinc‑cadmium resistance protein
*	?	NC_002947	61251 =	36 (0.650)	5 (0.090)	4/248	NT	13.0%	coding (421/885 nt)	PP_0052	beta‑lactamase domain‑containing protein
	?	NC_002947	61276 =	32 (0.600)					coding (446/885 nt)	PP_0052	beta‑lactamase domain‑containing protein
*	?	NC_002947	63722 =	56 (1.010)	5 (0.100)	5/240	NT	10.1%	coding (741/858 nt)	PP_0054	membrane protein
	?	NC_002947	63778 =	37 (0.710)					coding (797/858 nt)	PP_0054	membrane protein
*	?	NC_002947	77904 =	58 (1.050)	3 (0.060)	3/242	NT	5.1%	coding (569/933 nt)	fmt	methionyl‑tRNA formyltransferase
	?	NC_002947	77986 =	57 (1.090)					coding (487/933 nt)	fmt	methionyl‑tRNA formyltransferase
*	?	NC_002947	86750 =	51 (0.920)	4 (0.080)	4/224	NT	8.3%	intergenic (‑33/+112)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	86841 =	44 (0.910)					intergenic (‑124/+21)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	126143 =	51 (0.920)	4 (0.080)	4/244	NT	8.1%	coding (948/951 nt)	thrB	homoserine kinase
	?	NC_002947	126182 =	42 (0.800)					coding (909/951 nt)	thrB	homoserine kinase
*	?	NC_002947	137328 =	39 (0.700)	3 (0.060)	3/240	NT	7.4%	coding (229/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
	?	NC_002947	137388 =	39 (0.750)					coding (289/1608 nt)	PP_0131	membrane‑anchored phosphodiesterase
*	?	NC_002947	165552 =	73 (1.320)	6 (0.110)	5/248	NT	8.5%	coding (222/315 nt)	pntAB	pyridine nucleotide transhydrogenase subunit alpha
	?	NC_002947	165610 =	59 (1.100)					coding (164/315 nt)	pntAB	pyridine nucleotide transhydrogenase subunit alpha
*	?	NC_002947	170160 =	48 (0.870)	3 (0.060)	3/248	NT	6.3%	coding (562/1221 nt)	PP_0159	family III CoA‑transferase
	?	NC_002947	170220 =	42 (0.780)					coding (622/1221 nt)	PP_0159	family III CoA‑transferase
*	?	NC_002947	203692 =	NA (NA)	11 (0.210)	4/248	NT	NA	coding (9198/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	203763 =	NA (NA)					coding (9269/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	= 209901	NA (NA)	7 (0.130)	7/242	NT	88.1%	coding (15407/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 209956	1 (0.020)					coding (15462/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	235331 =	49 (0.880)	12 (0.250)	9/224	NT	24.8%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	30 (0.620)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	243991 =	49 (0.880)	3 (0.060)	3/248	NT	5.7%	coding (180/663 nt)	fkl	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
	?	NC_002947	244041 =	52 (0.970)					coding (130/663 nt)	fkl	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
*	?	NC_002947	284096 =	41 (0.740)	7 (0.130)	6/242	NT	14.6%	coding (1547/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	284148 =	43 (0.820)					coding (1599/2004 nt)	betT‑II	choline/carnitine/betaine transporter
*	?	NC_002947	330819 =	65 (1.170)	3 (0.060)	3/244	NT	5.0%	coding (709/2298 nt)	PP_0272	ferric siderophore receptor
	?	NC_002947	330869 =	51 (0.970)					coding (759/2298 nt)	PP_0272	ferric siderophore receptor
*	?	NC_002947	= 341039	53 (0.960)	5 (0.090)	4/244	NT	8.8%	coding (68/177 nt)	PP_5438	hypothetical protein
	?	NC_002947	= 341063	53 (1.000)					coding (44/177 nt)	PP_5438	hypothetical protein
*	?	NC_002947	342927 =	48 (0.870)	3 (0.060)	3/240	NT	6.6%	intergenic (+58/+74)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
	?	NC_002947	342976 =	40 (0.770)					intergenic (+107/+25)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
*	?	NC_002947	364566 =	59 (1.070)	3 (0.060)	3/234	NT	5.4%	intergenic (‑33/+91)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein
	?	NC_002947	364649 =	51 (1.010)					intergenic (‑116/+8)	PP_0303/caiX	dehydrocarnitine cleavage enzyme/carnitine uptake ABC transporter substrate‑binding protein
*	?	NC_002947	= 372339	60 (1.080)	4 (0.080)	4/240	NT	6.1%	coding (1820/2061 nt)	dgcA	dimethylglycine dehydrogenase subunit
	?	NC_002947	= 372392	66 (1.270)					coding (1873/2061 nt)	dgcA	dimethylglycine dehydrogenase subunit
*	?	NC_002947	= 460804	68 (1.230)	4 (0.080)	4/244	NT	6.0%	coding (1661/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 460835	61 (1.160)					coding (1630/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
*	?	NC_002947	472278 =	62 (1.120)	4 (0.080)	4/244	NT	6.4%	coding (657/1851 nt)	rpoD	RNA polymerase sigma 70 factor
	?	NC_002947	472320 =	58 (1.100)					coding (615/1851 nt)	rpoD	RNA polymerase sigma 70 factor
*	?	NC_002947	487574 =	47 (0.850)	3 (0.060)	3/242	NT	6.1%	coding (728/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	487613 =	48 (0.920)					coding (689/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
*	?	NC_002947	499204 =	30 (0.540)	5 (0.100)	4/228	NT	19.3%	intergenic (+48/‑248)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
	?	NC_002947	499271 =	15 (0.300)					intergenic (+115/‑181)	uhpA/PP_0411	two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein
*	?	NC_002947	515444 =	49 (0.880)	3 (0.060)	3/240	NT	5.9%	coding (298/648 nt)	coq	2‑nonaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase
	?	NC_002947	515527 =	50 (0.960)					coding (215/648 nt)	coq	2‑nonaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase
*	?	NC_002947	= 517608	53 (0.960)	3 (0.060)	3/246	NT	5.6%	coding (408/957 nt)	PP_0430	hypothetical protein
	?	NC_002947	= 517666	51 (0.960)					coding (350/957 nt)	PP_0430	hypothetical protein
*	?	NC_002947	594783 =	36 (0.650)	5 (0.100)	4/226	NT	12.9%	intergenic (‑22/+105)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594844 =	36 (0.740)					intergenic (‑83/+44)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
*	?	NC_002947	604239 =	46 (0.830)	3 (0.060)	3/248	NT	6.3%	coding (71/501 nt)	nusB	transcription antitermination protein
	?	NC_002947	604287 =	45 (0.840)					coding (119/501 nt)	nusB	transcription antitermination protein
*	?	NC_002947	= 629919	49 (0.880)	4 (0.080)	4/240	NT	7.7%	coding (279/1395 nt)	eutB	ethanolamine ammonia‑lyase subunit alpha
	?	NC_002947	= 629953	50 (0.960)					coding (245/1395 nt)	eutB	ethanolamine ammonia‑lyase subunit alpha
*	?	NC_002947	= 689947	55 (0.990)	4 (0.080)	4/246	NT	6.2%	coding (690/948 nt)	PP_0591	adenosine deaminase
	?	NC_002947	= 689973	68 (1.280)					coding (664/948 nt)	PP_0591	adenosine deaminase
*	?	NC_002947	= 709514	64 (1.160)	4 (0.080)	4/234	NT	6.5%	coding (259/951 nt)	ribF	bifunctional riboflavin kinase/FMN adenylyltransferase
	?	NC_002947	= 709563	56 (1.110)					coding (308/951 nt)	ribF	bifunctional riboflavin kinase/FMN adenylyltransferase
*	?	NC_002947	711252 =	58 (1.050)	5 (0.090)	5/244	NT	8.5%	coding (1050/2832 nt)	ileS	isoleucine‑‑tRNA ligase
	?	NC_002947	711293 =	52 (0.990)					coding (1091/2832 nt)	ileS	isoleucine‑‑tRNA ligase
*	?	NC_002947	= 724733	59 (1.070)	4 (0.080)	4/244	NT	6.7%	coding (1166/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 724771	55 (1.040)					coding (1128/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	737380 =	49 (0.880)	5 (0.090)	4/246	NT	9.7%	coding (471/708 nt)	PP_0629	membrane protein
	?	NC_002947	737416 =	46 (0.860)					coding (507/708 nt)	PP_0629	membrane protein
*	?	NC_002947	= 741869	NA (NA)	8 (0.150)	6/244	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase
*	?	NC_002947	= 769351	49 (0.880)	3 (0.060)	3/240	NT	6.4%	coding (1429/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	= 769381	42 (0.810)					intergenic (+19/‑27)	mmuP/PP_0661	S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR
*	?	NC_002947	784671 =	60 (1.080)	5 (0.090)	4/248	NT	8.5%	coding (1255/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	784751 =	49 (0.910)					coding (1175/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	785539 =	56 (1.010)	4 (0.070)	4/248	NT	6.5%	coding (387/3831 nt)	PP_0672	sensory box protein
	?	NC_002947	785585 =	61 (1.140)					coding (341/3831 nt)	PP_0672	sensory box protein
*	?	NC_002947	= 787038	58 (1.050)	4 (0.070)	4/250	NT	6.9%	coding (156/1668 nt)	ettA	ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 787085	52 (0.960)					coding (203/1668 nt)	ettA	ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	= 817844	44 (0.790)	5 (0.090)	4/246	NT	10.5%	coding (324/951 nt)	PP_0703	transmembrane sensor
	?	NC_002947	= 817882	43 (0.810)					coding (286/951 nt)	PP_0703	transmembrane sensor
*	?	NC_002947	820405 =	61 (1.100)	5 (0.090)	4/246	NT	8.4%	coding (885/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
	?	NC_002947	820437 =	51 (0.960)					coding (917/1053 nt)	ada	fused O(6)‑alkylguanine DNA alkyltransferase/transcriptional activator
*	?	NC_002947	890884 =	51 (0.920)	4 (0.080)	4/242	NT	8.3%	coding (48/711 nt)	yiaD	OmpA/MotB domain‑containing protein
	?	NC_002947	890927 =	40 (0.760)					coding (91/711 nt)	yiaD	OmpA/MotB domain‑containing protein
*	?	NC_002947	= 893573	66 (1.190)	5 (0.090)	4/246	NT	7.4%	coding (142/2088 nt)	pta	phosphate acetyltransferase
	?	NC_002947	= 893650	61 (1.150)					coding (65/2088 nt)	pta	phosphate acetyltransferase
*	?	NC_002947	= 913067	42 (0.760)	3 (0.060)	3/242	NT	6.8%	coding (722/948 nt)	fruK	1‑phosphofructokinase monomer
	?	NC_002947	= 913096	42 (0.800)					coding (751/948 nt)	fruK	1‑phosphofructokinase monomer
*	?	NC_002947	929143 =	54 (0.980)	4 (0.080)	4/244	NT	6.7%	coding (16479/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	929189 =	60 (1.140)					coding (16433/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	= 1025293	13 (0.230)	4 (0.090)	4/202	NT	19.4%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025332	23 (0.530)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	= 1149926	61 (1.100)	7 (0.130)	7/240	NT	11.7%	intergenic (‑173/+84)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	= 1149989	49 (0.940)					intergenic (‑236/+21)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	1149981 =	50 (0.900)	4 (0.080)	4/246	NT	7.6%	intergenic (‑228/+29)	PP_1008/gapA	RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase
	?	NC_002947	1150022 =	49 (0.920)					coding (990/1002 nt)	gapA	glyceraldehyde‑3‑phosphate dehydrogenase
*	?	NC_002947	= 1215210	58 (1.050)	3 (0.060)	3/238	NT	5.9%	coding (1749/4305 nt)	PP_1061	ATP‑dependent DNA helicase
	?	NC_002947	= 1215304	41 (0.800)					coding (1655/4305 nt)	PP_1061	ATP‑dependent DNA helicase
*	?	NC_002947	= 1254826	49 (0.880)	4 (0.080)	4/240	NT	7.6%	coding (675/2040 nt)	metG	methionine‑‑tRNA ligase
	?	NC_002947	= 1254866	52 (1.000)					coding (635/2040 nt)	metG	methionine‑‑tRNA ligase
*	?	NC_002947	= 1260815	31 (0.560)	3 (0.060)	3/240	NT	8.8%	coding (636/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase
	?	NC_002947	= 1260846	33 (0.640)					coding (605/2451 nt)	PP_1103	DEAD box family ATP‑dependent helicase
*	?	NC_002947	1273250 =	53 (0.960)	6 (0.120)	6/226	NT	12.0%	intergenic (+41/+127)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	1273339 =	41 (0.840)					intergenic (+130/+38)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1296784 =	NA (NA)	7 (0.130)	5/242	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase
*	?	NC_002947	= 1317169	54 (0.980)	4 (0.070)	4/248	NT	6.7%	coding (587/1989 nt)	PP_1150	membrane protein
	?	NC_002947	= 1317204	59 (1.100)					coding (622/1989 nt)	PP_1150	membrane protein
*	?	NC_002947	= 1354380	57 (1.030)	3 (0.060)	3/240	NT	5.5%	coding (997/2880 nt)	nrdA	ribonucleoside‑diphosphate reductase subunit alpha
	?	NC_002947	= 1354407	50 (0.960)					coding (970/2880 nt)	nrdA	ribonucleoside‑diphosphate reductase subunit alpha
*	?	NC_002947	1380487 =	49 (0.880)	4 (0.080) +CTGAC	3/246	NT	6.9%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380742 =	64 (1.160)					intergenic (‑130/+5)	PP_t67/PP_t66	tRNA‑Met/tRNA‑Met
*	?	NC_002947	1410031 =	54 (0.980)	5 (0.090)	4/246	NT	9.6%	coding (701/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	1410076 =	42 (0.790)					coding (746/1059 nt)	nadA	quinolinate synthase iron‑sulfur cluster subunit
*	?	NC_002947	= 1416566	44 (0.790)	3 (0.060)	3/240	NT	6.2%	coding (936/1122 nt)	PP_1238	lipoprotein
	?	NC_002947	= 1416608	50 (0.960)					coding (978/1122 nt)	PP_1238	lipoprotein
*	?	NC_002947	1419549 =	31 (0.560)	6 (0.140)	6/198	NT	27.3%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419637 =	8 (0.190)					intergenic (‑126/+10)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	1419958 =	49 (0.880)	3 (0.060)	3/248	NT	5.6%	coding (55/366 nt) noncoding (83/90 nt)	PP_1244 PP_mr17	hypothetical protein C4 ncRNA
	?	NC_002947	1420038 =	54 (1.010)					noncoding (3/90 nt)	PP_mr17	C4 ncRNA
*	?	NC_002947	= 1439816	38 (0.690)	3 (0.060)	3/236	NT	7.7%	intergenic (‑147/‑512)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1439839	37 (0.730)					intergenic (‑170/‑489)	yveA/PP_1260	aspartate‑proton symporter/transposase
*	?	NC_002947	= 1447365	60 (1.080)	6 (0.110)	4/244	NT	9.1%	coding (1463/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	= 1447377	62 (1.180)					coding (1475/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1472574 =	41 (0.740)	3 (0.060)	3/246	NT	6.8%	coding (253/1491 nt)	alg8	glycosyltransferase Alg8
	?	NC_002947	1472611 =	43 (0.810)					coding (216/1491 nt)	alg8	glycosyltransferase Alg8
*	?	NC_002947	= 1477924	58 (1.050)	5 (0.090)	4/244	NT	8.1%	coding (578/1395 nt)	PP_1291	PhoH family protein
	?	NC_002947	= 1477949	58 (1.100)					coding (603/1395 nt)	PP_1291	PhoH family protein
*	?	NC_002947	= 1478911	58 (1.050)	5 (0.090)	4/244	NT	8.8%	intergenic (+170/‑26)	PP_1291/moaC	PhoH family protein/cyclic pyranopterin monophosphate synthase accessory protein
	?	NC_002947	= 1478933	49 (0.930)					intergenic (+192/‑4)	PP_1291/moaC	PhoH family protein/cyclic pyranopterin monophosphate synthase accessory protein
*	?	NC_002947	1499507 =	18 (0.330)	7 (0.140)	6/232	NT	17.2%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	51 (1.020)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 1534600	56 (1.010)	4 (0.080)	4/244	NT	6.5%	coding (2611/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	= 1534622	61 (1.160)					coding (2633/2820 nt)	secA	protein translocase subunit SecA
*	?	NC_002947	1536092 =	63 (1.140)	3 (0.060)	3/242	NT	5.3%	coding (1101/1218 nt)	argJ	glutamate N‑acetyltransferase/amino acid acetyltransferase
	?	NC_002947	1536130 =	48 (0.920)					coding (1139/1218 nt)	argJ	glutamate N‑acetyltransferase/amino acid acetyltransferase
*	?	NC_002947	1539456 =	54 (0.980)	3 (0.060)	3/242	NT	5.7%	coding (1114/2031 nt)	PP_1350	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	1539509 =	49 (0.940)					coding (1061/2031 nt)	PP_1350	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	1541197 =	48 (0.870)	4 (0.080)	4/246	NT	7.2%	coding (328/918 nt)	panE	2‑dehydropantoate 2‑reductase
	?	NC_002947	1541248 =	57 (1.070)					coding (277/918 nt)	panE	2‑dehydropantoate 2‑reductase
*	?	NC_002947	= 1545648	57 (1.030)	3 (0.060)	3/248	NT	5.3%	coding (455/1548 nt)	ampG	muropeptide permease AmpG
	?	NC_002947	= 1545699	53 (0.990)					coding (404/1548 nt)	ampG	muropeptide permease AmpG
*	?	NC_002947	1555259 =	39 (0.700)	4 (0.080)	4/244	NT	9.4%	coding (1331/1434 nt)	sbcB	exodeoxyribonuclease I
	?	NC_002947	1555304 =	40 (0.760)					coding (1376/1434 nt)	sbcB	exodeoxyribonuclease I
*	?	NC_002947	1574147 =	44 (0.790)	6 (0.110)	6/248	NT	11.2%	coding (103/393 nt)	pcaC	4‑carboxymuconolactone decarboxylase
	?	NC_002947	1574202 =	53 (0.990)					coding (158/393 nt)	pcaC	4‑carboxymuconolactone decarboxylase
*	?	NC_002947	= 1578132	48 (0.870)	3 (0.060)	3/248	NT	5.7%	coding (116/1455 nt)	ttgC	efflux pump outer membrane protein TtgC
	?	NC_002947	= 1578145	53 (0.990)					coding (103/1455 nt)	ttgC	efflux pump outer membrane protein TtgC
*	?	NC_002947	1600438 =	44 (0.790)	8 (0.150)	6/244	NT	16.5%	coding (746/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
	?	NC_002947	1600489 =	39 (0.740)					coding (695/2292 nt)	bglX	beta‑D‑glucoside glucohydrolase
*	?	NC_002947	= 1616849	52 (0.940)	3 (0.060)	3/244	NT	5.6%	coding (410/1515 nt)	PP_1416	tricarboxylate transport protein TctA
	?	NC_002947	= 1616879	52 (0.990)					coding (380/1515 nt)	PP_1416	tricarboxylate transport protein TctA
*	?	NC_002947	1647433 =	55 (0.990)	6 (0.110)	4/244	NT	11.3%	coding (1289/1335 nt)	oprB‑II	carbohydrate‑selective porin
	?	NC_002947	1647473 =	42 (0.800)					coding (1249/1335 nt)	oprB‑II	carbohydrate‑selective porin
*	?	NC_002947	1650007 =	43 (0.780)	3 (0.060)	3/242	NT	7.4%	coding (1053/2043 nt)	PP_1446	TonB‑dependent receptor
	?	NC_002947	1650043 =	35 (0.670)					coding (1017/2043 nt)	PP_1446	TonB‑dependent receptor
*	?	NC_002947	1667298 =	52 (0.940)	4 (0.080)	4/246	NT	7.6%	coding (300/1377 nt)	ffh	signal recognition particle GTPase subunit
	?	NC_002947	1667354 =	47 (0.880)					coding (356/1377 nt)	ffh	signal recognition particle GTPase subunit
*	?	NC_002947	= 1669258	78 (1.410)	4 (0.080)	4/246	NT	5.2%	coding (367/537 nt)	rimM	ribosome maturation factor RimM
	?	NC_002947	= 1669288	72 (1.350)					coding (397/537 nt)	rimM	ribosome maturation factor RimM
*	?	NC_002947	= 1699744	44 (0.790)	4 (0.080)	4/242	NT	8.2%	coding (430/1008 nt)	PP_1494	GGDEF domain‑containing response regulator
	?	NC_002947	= 1699781	48 (0.920)					coding (467/1008 nt)	PP_1494	GGDEF domain‑containing response regulator
*	?	NC_002947	1720832 =	49 (0.880)	4 (0.080)	4/246	NT	8.6%	coding (572/1101 nt)	PP_1516	RND membrane fusion protein
	?	NC_002947	1720890 =	38 (0.710)					coding (630/1101 nt)	PP_1516	RND membrane fusion protein
*	?	NC_002947	= 1728646	32 (0.580)	6 (0.120)	6/240	NT	15.6%	intergenic (+40/+83)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
	?	NC_002947	= 1728683	35 (0.670)					intergenic (+77/+46)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
*	?	NC_002947	1748797 =	53 (0.960)	6 (0.110)	4/242	NT	10.2%	intergenic (‑130/‑202)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	1748838 =	56 (1.070)					intergenic (‑171/‑161)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
*	?	NC_002947	1784165 =	36 (0.650)	4 (0.080)	4/246	NT	9.1%	coding (736/783 nt)	map	methionine aminopeptidase
	?	NC_002947	1784216 =	45 (0.850)					coding (685/783 nt)	map	methionine aminopeptidase
*	?	NC_002947	= 1786552	49 (0.880)	4 (0.070)	4/250	NT	7.5%	coding (383/864 nt)	tsf	elongation factor Ts
	?	NC_002947	= 1786596	51 (0.940)					coding (427/864 nt)	tsf	elongation factor Ts
*	?	NC_002947	1798562 =	50 (0.900)	3 (0.060)	3/242	NT	5.3%	coding (485/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1798675 =	61 (1.170)					coding (598/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
*	?	NC_002947	1826340 =	62 (1.120)	4 (0.080)	4/244	NT	7.3%	coding (927/1092 nt)	PP_1627	hypothetical protein
	?	NC_002947	1826399 =	43 (0.810)					coding (986/1092 nt)	PP_1627	hypothetical protein
*	?	NC_002947	1852407 =	73 (1.320)	7 (0.130)	5/240	NT	9.4%	coding (1493/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
	?	NC_002947	1852449 =	66 (1.270)					coding (1535/2241 nt)	relA	ATP:GTP 3'‑pyrophosphotransferase
*	?	NC_002947	= 1876471	41 (0.740)	3 (0.060)	3/246	NT	7.6%	coding (286/1182 nt)	PP_1682	glycoside hydrolase family protein
	?	NC_002947	= 1876531	34 (0.640)					coding (346/1182 nt)	PP_1682	glycoside hydrolase family protein
*	?	NC_002947	= 1886721	57 (1.030)	3 (0.060)	3/242	NT	5.1%	coding (1388/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	= 1886755	57 (1.090)					coding (1422/1488 nt)	rmuC	DNA recombination limiting inversions protein
*	?	NC_002947	1899218 =	41 (0.740)	6 (0.120)	5/226	NT	16.2%	intergenic (+288/‑232)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899278 =	26 (0.530)					intergenic (+348/‑172)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1899371 =	38 (0.690)	3 (0.060)	3/236	NT	7.8%	intergenic (+441/‑79)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899425 =	36 (0.710)					intergenic (+495/‑25)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	1901431 =	44 (0.790)	4 (0.080)	4/244	NT	7.8%	coding (1982/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1901478 =	52 (0.990)					coding (2029/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1902818	55 (0.990)	4 (0.080)	4/244	NT	7.2%	coding (3369/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	= 1902874	50 (0.950)					coding (3425/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
*	?	NC_002947	= 1923666	39 (0.700)	3 (0.060)	3/240	NT	6.3%	coding (374/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
	?	NC_002947	= 1923711	52 (1.000)					coding (329/795 nt)	PP_1723	2‑aminoethylphosphonate ABC transporter permease
*	?	NC_002947	1925703 =	35 (0.630)	4 (0.090)	4/208	NT	12.6%	intergenic (‑2/+98)	PP_1725/PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
	?	NC_002947	1925768 =	27 (0.600)					intergenic (‑67/+33)	PP_1725/PP_1726	hypothetical protein/ABC transporter substrate‑binding protein
*	?	NC_002947	1925936 =	62 (1.120)	4 (0.080)	4/244	NT	6.4%	coding (930/1065 nt)	PP_1726	ABC transporter substrate‑binding protein
	?	NC_002947	1926006 =	57 (1.080)					coding (860/1065 nt)	PP_1726	ABC transporter substrate‑binding protein
*	?	NC_002947	1937410 =	50 (0.900)	4 (0.080)	4/242	NT	8.8%	coding (274/747 nt)	PP_1737	hypothetical protein
	?	NC_002947	1937440 =	36 (0.690)					coding (244/747 nt)	PP_1737	hypothetical protein
*	?	NC_002947	1947775 =	28 (0.510)	3 (0.070)	3/204	NT	11.9%	intergenic (‑36/+134)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	1947894 =	22 (0.500)					intergenic (‑155/+15)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
*	?	NC_002947	1967145 =	24 (0.430)	6 (0.150)	5/190	NT	31.8%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967241 =	8 (0.200)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	2058506 =	48 (0.870)	5 (0.100)	3/242	NT	9.3%	coding (56/525 nt)	PP_1834	hypothetical protein
	?	NC_002947	2058555 =	52 (0.990)					coding (105/525 nt)	PP_1834	hypothetical protein
*	?	NC_002947	= 2084896	72 (1.300)	4 (0.080)	3/244	NT	5.6%	coding (81/852 nt)	PP_1863	LysR family transcriptional regulator
	?	NC_002947	= 2084924	67 (1.270)					coding (53/852 nt)	PP_1863	LysR family transcriptional regulator
*	?	NC_002947	2086080 =	NA (NA)	4 (0.080)	4/246	NT	NA	coding (195/1302 nt)	PP_1865	transposase
	?	NC_002947	2086120 =	NA (NA)					coding (235/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086243 =	NA (NA)	8 (0.150)	6/240	NT	NA	coding (358/1302 nt)	PP_1865	transposase
	?	NC_002947	2086305 =	NA (NA)					coding (420/1302 nt)	PP_1865	transposase
*	?	NC_002947	= 2086250	NA (NA)	5 (0.100)	5/240	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086546 =	NA (NA)	3 (0.060)	3/248	NT	NA	coding (661/1302 nt)	PP_1865	transposase
	?	NC_002947	2086577 =	NA (NA)					coding (692/1302 nt)	PP_1865	transposase
*	?	NC_002947	2086731 =	NA (NA)	13 (0.250)	11/240	NT	NA	coding (846/1302 nt)	PP_1865	transposase
	?	NC_002947	2086762 =	NA (NA)					coding (877/1302 nt)	PP_1865	transposase
*	?	NC_002947	2088717 =	64 (1.160)	4 (0.080)	4/242	NT	6.1%	coding (735/1347 nt)	aroH	3‑deoxy‑7‑phosphoheptulonate synthase
	?	NC_002947	2088756 =	62 (1.180)					coding (696/1347 nt)	aroH	3‑deoxy‑7‑phosphoheptulonate synthase
*	?	NC_002947	2099960 =	26 (0.470)	7 (0.150)	5/210	NT	27.3%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100055 =	16 (0.350)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	2117745 =	43 (0.780)	4 (0.080)	4/246	NT	8.5%	coding (1421/2466 nt)	PP_1884	hypothetical protein
	?	NC_002947	2117773 =	45 (0.850)					coding (1449/2466 nt)	PP_1884	hypothetical protein
*	?	NC_002947	2117966 =	41 (0.740)	3 (0.060)	3/244	NT	6.9%	coding (1642/2466 nt)	PP_1884	hypothetical protein
	?	NC_002947	2118004 =	42 (0.800)					coding (1680/2466 nt)	PP_1884	hypothetical protein
*	?	NC_002947	2143357 =	62 (1.120)	4 (0.080)	4/244	NT	6.3%	coding (137/435 nt)	PP_1899	ExbD/TolR family protein
	?	NC_002947	2143402 =	60 (1.140)					coding (182/435 nt)	PP_1899	ExbD/TolR family protein
*	?	NC_002947	= 2229008	68 (1.230)	3 (0.060)	3/238	NT	5.1%	coding (144/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	= 2229057	49 (0.950)					coding (193/783 nt)	ycfH	tRNA D‑aminoacylase
*	?	NC_002947	2301453 =	0 (0.000)	102 (1.890)	75/250	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase
*	?	NC_002947	= 2301454	0 (0.000)	72 (1.320)	55/252	NT	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	2301496 =	27 (0.490)	4 (0.080)	4/228	NT	7.5%	intergenic (‑140/‑191)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2301581 =	75 (1.520)					intergenic (‑225/‑106)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	2334268 =	106 (1.910)	7 (0.130)	6/242	NT	6.2%	intergenic (+15/+65)	fadA/PP_2052	3‑ketoacyl‑CoA thiolase/bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
	?	NC_002947	2334333 =	111 (2.120)					coding (2124/2124 nt)	PP_2052	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
*	?	NC_002947	= 2341836	111 (2.000)	6 (0.110)	6/248	NT	5.0%	coding (1056/1305 nt)	yraO	transporter YraO
	?	NC_002947	= 2341857	119 (2.220)					coding (1077/1305 nt)	yraO	transporter YraO
*	?	NC_002947	= 2409101	90 (1.630)	7 (0.130)	7/240	NT	7.6%	coding (2347/2742 nt)	acnA‑I	aconitate hydratase
	?	NC_002947	= 2409113	85 (1.640)					coding (2335/2742 nt)	acnA‑I	aconitate hydratase
*	?	NC_002947	= 2412856	109 (1.970)	8 (0.150)	5/240	NT	8.0%	intergenic (+120/‑301)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	= 2412933	83 (1.600)					intergenic (+197/‑224)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
*	?	NC_002947	2414822 =	58 (1.050)	7 (0.130)	6/252	NT	10.9%	coding (20/198 nt)	PP_2115	hypothetical protein
	?	NC_002947	= 4908082	NA (NA)					intergenic (‑58/‑224)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	2436611 =	106 (1.910)	9 (0.180)	8/236	NT	8.4%	intergenic (+189/‑470)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	2436666 =	98 (1.920)					intergenic (+244/‑415)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
*	?	NC_002947	2466758 =	92 (1.660)	5 (0.090)	5/250	NT	5.7%	coding (244/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
	?	NC_002947	2466803 =	77 (1.420)					coding (289/528 nt)	PP_2159	plastocyanin/azurin family copper‑binding protein
*	?	NC_002947	2505864 =	107 (1.930)	8 (0.160)	8/238	NT	7.5%	coding (464/1107 nt)	PP_2199	hypothetical protein
	?	NC_002947	2505904 =	97 (1.890)					coding (504/1107 nt)	PP_2199	hypothetical protein
*	?	NC_002947	2540513 =	49 (0.880)	3 (0.060)	3/248	NT	5.6%	coding (260/534 nt)	PP_2232	XRE family transcriptional regulator
	?	NC_002947	2540544 =	54 (1.010)					coding (291/534 nt)	PP_2232	XRE family transcriptional regulator
*	?	NC_002947	= 2570235	48 (0.870)	4 (0.080)	4/238	NT	7.6%	coding (133/669 nt)	PP_2253	GntR family transcriptional regulator
	?	NC_002947	= 2570259	52 (1.010)					coding (109/669 nt)	PP_2253	GntR family transcriptional regulator
*	?	NC_002947	2590842 =	68 (1.230)	4 (0.080)	4/242	NT	6.4%	coding (186/426 nt)	PP_2268	endodeoxyribonuclease I
	?	NC_002947	2590879 =	53 (1.010)					coding (223/426 nt)	PP_2268	endodeoxyribonuclease I
*	?	NC_002947	2671446 =	62 (1.120)	3 (0.060)	3/242	NT	5.5%	coding (872/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2671516 =	44 (0.840)					coding (802/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	2671963 =	54 (0.980)	6 (0.110)	6/248	NT	10.0%	coding (355/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2672016 =	56 (1.040)					coding (302/2610 nt)	acnB	aconitate hydratase B
*	?	NC_002947	2674214 =	43 (0.780)	3 (0.060)	3/242	NT	7.0%	coding (197/732 nt)	PP_2343	hypothetical protein
	?	NC_002947	2674244 =	39 (0.750)					coding (227/732 nt)	PP_2343	hypothetical protein
*	?	NC_002947	2684782 =	70 (1.260)	4 (0.080)	4/234	NT	6.3%	coding (101/243 nt)	PP_5520	hypothetical protein
	?	NC_002947	2684834 =	55 (1.090)					coding (49/243 nt)	PP_5520	hypothetical protein
*	?	NC_002947	2736562 =	44 (0.790)	4 (0.080)	4/240	NT	8.4%	coding (3460/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
	?	NC_002947	2736606 =	46 (0.890)					coding (3504/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
*	?	NC_002947	2737686 =	45 (0.810)	3 (0.060)	3/246	NT	7.6%	coding (65/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	2737723 =	30 (0.560)					coding (102/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2745303	57 (1.030)	5 (0.090)	5/248	NT	9.3%	coding (378/489 nt)	PP_2400	hypothetical protein
	?	NC_002947	= 2745362	42 (0.780)					coding (319/489 nt)	PP_2400	hypothetical protein
*	?	NC_002947	2765041 =	45 (0.810)	5 (0.100)	5/242	NT	10.6%	noncoding (183/199 nt)	PP_mr33	Cobalamin regulatory region
	?	NC_002947	2765088 =	42 (0.800)					noncoding (136/199 nt)	PP_mr33	Cobalamin regulatory region
*	?	NC_002947	2774442 =	46 (0.830)	3 (0.060)	3/246	NT	6.6%	coding (1070/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2774487 =	41 (0.770)					coding (1025/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	2775001 =	54 (0.980)	3 (0.060)	3/246	NT	5.3%	coding (511/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2775048 =	56 (1.050)					coding (464/1353 nt)	PP_5521	hypothetical protein
*	?	NC_002947	= 2785510	73 (1.320)	4 (0.080)	4/238	NT	5.4%	coding (304/390 nt)	PP_5523	hypothetical protein
	?	NC_002947	= 2785556	73 (1.420)					coding (350/390 nt)	PP_5523	hypothetical protein
*	?	NC_002947	2793928 =	63 (1.140)	4 (0.080)	4/246	NT	6.4%	coding (76/186 nt)	PP_2446	hypothetical protein
	?	NC_002947	2793958 =	56 (1.050)					coding (46/186 nt)	PP_2446	hypothetical protein
*	?	NC_002947	2801124 =	35 (0.630)	3 (0.060)	3/244	NT	8.5%	coding (467/960 nt)	rbsB	ribose ABC transporter, periplasmic ribose‑binding subunit
	?	NC_002947	2801161 =	31 (0.590)					coding (504/960 nt)	rbsB	ribose ABC transporter, periplasmic ribose‑binding subunit
*	?	NC_002947	2806817 =	51 (0.920)	3 (0.060)	3/238	NT	6.2%	coding (191/969 nt)	Nuh	ribonucleoside hydrolase
	?	NC_002947	2806869 =	44 (0.860)					coding (243/969 nt)	Nuh	ribonucleoside hydrolase
*	?	NC_002947	2959898 =	50 (0.900)	5 (0.090)	5/244	NT	10.1%	coding (1294/2316 nt)	PP_2590	ferric siderophore receptor
	?	NC_002947	2959939 =	41 (0.780)					coding (1253/2316 nt)	PP_2590	ferric siderophore receptor
*	?	NC_002947	= 2966245	56 (1.010)	4 (0.070)	4/248	NT	6.8%	coding (382/1758 nt)	PP_2595	ABC transporter permease/ATP‑binding protein
	?	NC_002947	= 2966269	55 (1.030)					coding (358/1758 nt)	PP_2595	ABC transporter permease/ATP‑binding protein
*	?	NC_002947	3013550 =	56 (1.010)	4 (0.080)	4/246	NT	6.4%	coding (82/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	3013626 =	64 (1.200)					coding (158/2610 nt)	bcsA	cellulose synthase and translocator subunit
*	?	NC_002947	= 3015001	53 (0.960)	3 (0.060)	3/240	NT	5.5%	coding (1533/2610 nt)	bcsA	cellulose synthase and translocator subunit
	?	NC_002947	= 3015025	54 (1.040)					coding (1557/2610 nt)	bcsA	cellulose synthase and translocator subunit
*	?	NC_002947	= 3050490	37 (0.670)	4 (0.080)	4/246	NT	9.9%	coding (322/1164 nt)	PP_2663	hypothetical protein
	?	NC_002947	= 3050517	37 (0.700)					coding (349/1164 nt)	PP_2663	hypothetical protein
*	?	NC_002947	= 3073066	64 (1.160)	4 (0.080)	4/246	NT	6.1%	coding (772/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3073109	61 (1.150)					coding (815/1671 nt)	PP_2683	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 3079127	49 (0.880)	4 (0.070)	4/252	NT	7.6%	coding (139/1410 nt)	PP_2688	hypothetical protein
	?	NC_002947	= 3079160	49 (0.900)					coding (106/1410 nt)	PP_2688	hypothetical protein
*	?	NC_002947	3084350 =	60 (1.080)	3 (0.060)	3/240	NT	5.6%	coding (760/987 nt)	PP_2693	putative Dipeptidase
	?	NC_002947	3084386 =	45 (0.870)					coding (724/987 nt)	PP_2693	putative Dipeptidase
*	?	NC_002947	3085575 =	51 (0.920)	3 (0.060)	3/240	NT	5.9%	coding (991/1443 nt)	PP_2694	aldehyde dehydrogenase family protein
	?	NC_002947	3085615 =	48 (0.920)					coding (951/1443 nt)	PP_2694	aldehyde dehydrogenase family protein
*	?	NC_002947	= 3114688	58 (1.050)	4 (0.080)	4/246	NT	6.2%	coding (273/537 nt)	PP_2730	lipoprotein
	?	NC_002947	= 3114719	66 (1.240)					coding (304/537 nt)	PP_2730	lipoprotein
*	?	NC_002947	3118871 =	56 (1.010)	3 (0.060)	3/248	NT	6.0%	coding (570/810 nt)	PP_2735	hypothetical protein
	?	NC_002947	3118971 =	39 (0.730)					coding (470/810 nt)	PP_2735	hypothetical protein
*	?	NC_002947	3123544 =	54 (0.980)	3 (0.060)	3/244	NT	6.0%	intergenic (+91/+71)	PP_2740/PP_2741	MerR family transcriptional regulator/membrane protein
	?	NC_002947	3123586 =	42 (0.800)					intergenic (+133/+29)	PP_2740/PP_2741	MerR family transcriptional regulator/membrane protein
*	?	NC_002947	3148298 =	58 (1.050)	4 (0.080)	4/246	NT	7.0%	coding (236/705 nt)	msuE	FMN reductase
	?	NC_002947	3148364 =	50 (0.940)					coding (302/705 nt)	msuE	FMN reductase
*	?	NC_002947	3170146 =	55 (0.990)	4 (0.080)	4/242	NT	7.2%	coding (2041/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
	?	NC_002947	3170176 =	51 (0.970)					coding (2071/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
*	?	NC_002947	3196232 =	43 (0.780)	4 (0.080)	4/244	NT	8.6%	intergenic (‑166/+26)	dhaT/PP_2804	1,3‑propanediol dehydrogenase/alpha/beta family hydrolase
	?	NC_002947	3196277 =	44 (0.830)					coding (857/876 nt)	PP_2804	alpha/beta family hydrolase
*	?	NC_002947	3211375 =	55 (0.990)	4 (0.080)	4/242	NT	7.0%	coding (412/1254 nt)	PP_2815	hypothetical protein
	?	NC_002947	3211414 =	54 (1.030)					coding (451/1254 nt)	PP_2815	hypothetical protein
*	?	NC_002947	3217292 =	65 (1.170)	4 (0.080)	3/244	NT	6.5%	coding (82/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217326 =	53 (1.000)					coding (116/1407 nt)	oprJ	outer membrane protein OprJ
*	?	NC_002947	= 3217683	45 (0.810)	3 (0.060)	3/244	NT	6.1%	coding (473/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	= 3217733	49 (0.930)					coding (523/1407 nt)	oprJ	outer membrane protein OprJ
*	?	NC_002947	3218062 =	51 (0.920)	3 (0.060)	3/242	NT	5.5%	coding (852/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3218130 =	54 (1.030)					coding (920/1407 nt)	oprJ	outer membrane protein OprJ
*	?	NC_002947	= 3254685	49 (0.880)	4 (0.080)	4/244	NT	7.5%	coding (1053/2202 nt)	PP_2852	sulfatase domain‑containing protein
	?	NC_002947	= 3254725	52 (0.990)					coding (1013/2202 nt)	PP_2852	sulfatase domain‑containing protein
*	?	NC_002947	= 3318503	55 (0.990)	4 (0.070)	4/248	NT	6.9%	coding (534/2067 nt)	treSA	trehalose synthase A
	?	NC_002947	= 3318537	54 (1.010)					coding (500/2067 nt)	treSA	trehalose synthase A
*	?	NC_002947	3366553 =	42 (0.760)	11 (0.200)	10/252	NT	19.2%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	5392467 =	51 (0.940)					coding (206/582 nt)	PP_5710	hypothetical protein
*	?	NC_002947	3366553 =	42 (0.760)	39 (0.720)	28/252	NT	60.3%	intergenic (+219/‑142)	PP_2962/PP_2964	alcohol dehydrogenase/transposase
	?	NC_002947	5399834 =	10 (0.180)					coding (647/1437 nt)	PP_4743	hypothetical protein
*	?	NC_002947	= 3383565	58 (1.050)	45 (0.810)	41/256	NT	57.0%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 5399838	10 (0.180)					coding (651/1437 nt)	PP_4743	hypothetical protein
*	?	NC_002947	= 3387771	46 (0.830)	6 (0.120)	6/240	NT	10.4%	coding (552/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3387797	60 (1.160)					coding (578/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3394090	46 (0.830)	4 (0.080)	4/244	NT	7.9%	coding (317/900 nt)	PP_2997	protein CnmA
	?	NC_002947	= 3394125	49 (0.930)					coding (282/900 nt)	PP_2997	protein CnmA
*	?	NC_002947	= 3450042	51 (0.920)	4 (0.070)	4/250	NT	6.5%	coding (1240/1278 nt)	PP_3067	hypothetical protein
	?	NC_002947	= 3450071	65 (1.200)					coding (1269/1278 nt)	PP_3067	hypothetical protein
*	?	NC_002947	3479997 =	56 (1.010)	3 (0.060)	3/242	NT	5.5%	coding (1222/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	3480070 =	50 (0.960)					coding (1149/2496 nt)	PP_3090	OmpA domain‑containing protein
*	?	NC_002947	3511889 =	52 (0.940)	3 (0.060)	3/250	NT	5.6%	coding (557/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	3511940 =	50 (0.920)					coding (608/4158 nt)	PP_3108	rhs family protein
*	?	NC_002947	3522702 =	60 (1.080)	5 (0.100)	5/226	NT	11.6%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522789 =	23 (0.470)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase
*	?	NC_002947	= 3539531	49 (0.880)	4 (0.080)	4/236	NT	7.9%	coding (218/1539 nt)	PP_3127	exopolysaccharide transport protein
	?	NC_002947	= 3539584	48 (0.940)					coding (271/1539 nt)	PP_3127	exopolysaccharide transport protein
*	?	NC_002947	3542564 =	58 (1.050)	4 (0.080)	4/240	NT	7.4%	coding (159/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	3542609 =	46 (0.890)					coding (114/966 nt)	galE	UDP‑glucose 4‑epimerase
*	?	NC_002947	= 3555686	72 (1.300)	4 (0.080)	3/246	NT	5.3%	coding (103/1188 nt)	PP_3140	group 2 family glycosyl transferase
	?	NC_002947	= 3555711	75 (1.410)					coding (128/1188 nt)	PP_3140	group 2 family glycosyl transferase
*	?	NC_002947	3577225 =	42 (0.760)	3 (0.060)	3/244	NT	6.7%	coding (611/792 nt)	PP_3157	inositol monophosphatase family protein
	?	NC_002947	3577279 =	44 (0.830)					coding (665/792 nt)	PP_3157	inositol monophosphatase family protein
*	?	NC_002947	3610726 =	48 (0.870)	4 (0.080)	4/238	NT	8.1%	coding (2958/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3610778 =	46 (0.890)					coding (2906/3396 nt)	mcoA	Mn(II) copper oxidase A
*	?	NC_002947	3614654 =	73 (1.320)	4 (0.080)	4/244	NT	5.4%	coding (527/648 nt)	pet	protein Pet18
	?	NC_002947	3614691 =	71 (1.350)					coding (564/648 nt)	pet	protein Pet18
*	?	NC_002947	3647188 =	55 (0.990)	3 (0.060)	3/238	NT	5.8%	intergenic (‑125/‑529)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
	?	NC_002947	3647269 =	46 (0.890)					intergenic (‑206/‑448)	PP_3213/PP_3214	ABC transporter substrate‑binding protein/hypothetical protein
*	?	NC_002947	3648046 =	32 (0.580)	3 (0.060)	3/246	NT	8.9%	coding (330/807 nt)	PP_3214	hypothetical protein
	?	NC_002947	3648078 =	31 (0.580)					coding (362/807 nt)	PP_3214	hypothetical protein
*	?	NC_002947	3664357 =	42 (0.760)	3 (0.060)	3/242	NT	6.8%	coding (247/966 nt)	PP_3228	aliphatic sulfonate‑binding protein
	?	NC_002947	3664409 =	42 (0.800)					coding (299/966 nt)	PP_3228	aliphatic sulfonate‑binding protein
*	?	NC_002947	= 3759792	49 (0.880)	4 (0.080)	3/244	NT	7.9%	coding (425/975 nt)	folEB	GTP cyclohydrolase I
	?	NC_002947	= 3759821	47 (0.890)					coding (454/975 nt)	folEB	GTP cyclohydrolase I
*	?	NC_002947	= 3767345	38 (0.690)	3 (0.060)	3/244	NT	7.4%	coding (778/1290 nt)	PP_3329	membrane protein
	?	NC_002947	= 3767379	39 (0.740)					coding (812/1290 nt)	PP_3329	membrane protein
*	?	NC_002947	= 3784185	10 (0.180)	12 (0.220)	12/256	NT	61.5%	coding (509/822 nt)	nikE	nickel ABC transporter ATP‑binding protein
	?	NC_002947	3788848 =	5 (0.090)					intergenic (‑214/‑48)	PP_3350/atsA	hypothetical protein/arylsulfatase
*	?	NC_002947	= 3797522	51 (0.920)	4 (0.080)	4/240	NT	8.0%	coding (472/1449 nt)	vdh	vanillin dehydrogenase
	?	NC_002947	= 3797592	44 (0.850)					coding (402/1449 nt)	vdh	vanillin dehydrogenase
*	?	NC_002947	= 3813608	68 (1.230)	4 (0.080)	4/240	NT	6.3%	coding (685/852 nt)	PP_3369	LysR family transcriptional regulator
	?	NC_002947	= 3813643	56 (1.080)					coding (720/852 nt)	PP_3369	LysR family transcriptional regulator
*	?	NC_002947	= 3825995	55 (0.990)	3 (0.060)	3/242	NT	5.4%	coding (51/1020 nt)	ptxS	2‑ketogluconate utilization repressor
	?	NC_002947	= 3826031	53 (1.010)					coding (15/1020 nt)	ptxS	2‑ketogluconate utilization repressor
*	?	NC_002947	= 3841612	47 (0.850)	3 (0.060)	3/242	NT	6.6%	coding (1273/1317 nt)	PP_3391	tartrate MFS transporter
	?	NC_002947	= 3841638	41 (0.780)					coding (1247/1317 nt)	PP_3391	tartrate MFS transporter
*	?	NC_002947	= 3864820	51 (0.920)	5 (0.100)	4/236	NT	9.5%	coding (825/1320 nt)	PP_3414	methyl‑accepting chemotaxis transducer/sensory box protein
	?	NC_002947	= 3864855	48 (0.940)					coding (790/1320 nt)	PP_3414	methyl‑accepting chemotaxis transducer/sensory box protein
*	?	NC_002947	= 3883650	70 (1.260)	4 (0.080)	4/234	NT	5.9%	coding (669/1056 nt)	PP_3428	TPR repeat‑containing protein
	?	NC_002947	= 3883683	64 (1.270)					coding (702/1056 nt)	PP_3428	TPR repeat‑containing protein
*	?	NC_002947	= 3903921	52 (0.940)	4 (0.080)	4/246	NT	7.9%	coding (822/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	= 3903973	43 (0.810)					coding (770/1593 nt)	ilvA‑I	threonine deaminase
*	?	NC_002947	3940056 =	63 (1.140)	4 (0.080)	3/242	NT	6.2%	coding (219/414 nt)	csgF	curli secretion/assembly outer membrane associated protein
	?	NC_002947	3940101 =	61 (1.170)					coding (174/414 nt)	csgF	curli secretion/assembly outer membrane associated protein
*	?	NC_002947	= 3951097	12 (0.220)	5 (0.090)	5/254	NT	23.9%	intergenic (‑61/+134)	PP_3486/PP_3487	cytochrome c/hypothetical protein
	?	NC_002947	= 3951157	20 (0.360)					intergenic (‑121/+74)	PP_3486/PP_3487	cytochrome c/hypothetical protein
*	?	NC_002947	= 3960868	40 (0.720)	5 (0.090)	5/246	NT	10.5%	coding (156/1074 nt)	PP_3491	enoly‑coenzyme A hydratase/isomerase family protein
	?	NC_002947	= 3960907	47 (0.880)					coding (195/1074 nt)	PP_3491	enoly‑coenzyme A hydratase/isomerase family protein
*	?	NC_002947	= 3969591	NA (NA)	5 (0.100)	3/242	NT	NA	coding (226/321 nt)	PP_3499	transposase
	?	NC_002947	= 3969615	NA (NA)					coding (250/321 nt)	PP_3499	transposase
*	?	NC_002947	3996804 =	48 (0.870)	4 (0.080)	4/244	NT	8.5%	coding (359/480 nt)	PP_3525	hypothetical protein
	?	NC_002947	3996848 =	40 (0.760)					coding (315/480 nt)	PP_3525	hypothetical protein
*	?	NC_002947	= 4007382	52 (0.940)	3 (0.060)	3/238	NT	6.3%	coding (494/1791 nt)	PP_3535	gamma‑glutamyltransferase
	?	NC_002947	= 4007435	41 (0.800)					coding (441/1791 nt)	PP_3535	gamma‑glutamyltransferase
*	?	NC_002947	4010418 =	52 (0.940)	4 (0.080)	4/242	NT	7.4%	coding (202/1188 nt)	pobA	4‑hydroxybenzoate 3‑monooxygenase
	?	NC_002947	4010468 =	51 (0.970)					coding (152/1188 nt)	pobA	4‑hydroxybenzoate 3‑monooxygenase
*	?	NC_002947	4019985 =	49 (0.880)	3 (0.060)	3/248	NT	6.4%	coding (696/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4020035 =	41 (0.760)					coding (746/2067 nt)	PP_3546	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4022750	55 (0.990)	6 (0.120)	4/240	NT	10.0%	intergenic (‑445/+223)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	= 4022826	57 (1.100)					intergenic (‑521/+147)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
*	?	NC_002947	= 4024595	36 (0.650)	4 (0.080)	4/244	NT	10.1%	coding (1104/1194 nt)	emrA	multidrug transporter membrane fusion protein
	?	NC_002947	= 4024600	37 (0.700)					coding (1099/1194 nt)	emrA	multidrug transporter membrane fusion protein
*	?	NC_002947	4056568 =	59 (1.070)	7 (0.130)	6/240	NT	12.1%	coding (1094/2406 nt)	PP_3575	ferric siderophore receptor
	?	NC_002947	4056638 =	46 (0.890)					coding (1024/2406 nt)	PP_3575	ferric siderophore receptor
*	?	NC_002947	= 4079665	72 (1.300)	5 (0.090)	5/246	NT	6.6%	coding (1112/1197 nt)	amaC	D‑lysine aminotransferase
	?	NC_002947	= 4079706	72 (1.350)					coding (1071/1197 nt)	amaC	D‑lysine aminotransferase
*	?	NC_002947	4098170 =	52 (0.940)	3 (0.060)	3/242	NT	5.9%	coding (520/975 nt)	qor‑II	quinone oxidoreductase
	?	NC_002947	4098214 =	47 (0.900)					coding (476/975 nt)	qor‑II	quinone oxidoreductase
*	?	NC_002947	= 4107331	38 (0.690)	5 (0.090)	5/248	NT	11.9%	coding (66/429 nt)	PP_3614	membrane protein
	?	NC_002947	= 4107357	37 (0.690)					coding (40/429 nt)	PP_3614	membrane protein
*	?	NC_002947	4124867 =	46 (0.830)	3 (0.060)	3/242	NT	6.6%	coding (1342/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
	?	NC_002947	4124918 =	41 (0.780)					coding (1393/1746 nt)	PP_3628	choline/carnitine/betaine transporter family protein
*	?	NC_002947	4241462 =	52 (0.940)	4 (0.070)	4/248	NT	7.5%	coding (237/1413 nt)	PP_3718	aminotransferase
	?	NC_002947	4241492 =	49 (0.910)					coding (207/1413 nt)	PP_3718	aminotransferase
*	?	NC_002947	= 4254758	65 (1.170)	4 (0.080)	4/238	NT	6.1%	coding (1370/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4254787	63 (1.220)					coding (1341/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	= 4282722	57 (1.030)	4 (0.080)	4/238	NT	7.3%	coding (508/1089 nt)	PP_3753	AraC family transcriptional regulator
	?	NC_002947	= 4282759	48 (0.930)					coding (471/1089 nt)	PP_3753	AraC family transcriptional regulator
*	?	NC_002947	4285454 =	37 (0.670)	4 (0.080)	4/244	NT	10.5%	intergenic (+10/‑3)	hbd/PP_3756	3‑hydroxybutyryl‑CoA dehydrogenase/TetR family transcriptional regulator
	?	NC_002947	4285522 =	33 (0.630)					coding (66/582 nt)	PP_3756	TetR family transcriptional regulator
*	?	NC_002947	= 4345579	45 (0.810)	3 (0.060)	3/248	NT	6.2%	coding (1155/1308 nt)	PP_3818	phosphate‑binding protein
	?	NC_002947	= 4345626	47 (0.880)					coding (1202/1308 nt)	PP_3818	phosphate‑binding protein
*	?	NC_002947	= 4381278	39 (0.700)	6 (0.110)	4/242	NT	14.1%	coding (1512/2253 nt)	PP_3857	hypothetical protein
	?	NC_002947	= 4381320	36 (0.690)					coding (1470/2253 nt)	PP_3857	hypothetical protein
*	?	NC_002947	4400544 =	42 (0.760)	4 (0.080)	4/246	NT	8.9%	coding (614/1272 nt)	PP_3879	HK97 family portal protein
	?	NC_002947	4400580 =	42 (0.790)					coding (578/1272 nt)	PP_3879	HK97 family portal protein
*	?	NC_002947	= 4401180	53 (0.960)	3 (0.060)	3/242	NT	5.5%	coding (169/189 nt)	PP_3880	hypothetical protein
	?	NC_002947	= 4401221	54 (1.030)					coding (128/189 nt)	PP_3880	hypothetical protein
*	?	NC_002947	4421693 =	38 (0.690)	4 (0.080)	4/240	NT	10.6%	coding (1443/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
	?	NC_002947	4421750 =	32 (0.620)					coding (1500/1662 nt)	PP_3912	DNA‑cytosine methyltransferase
*	?	NC_002947	= 4430832	40 (0.720)	3 (0.060)	3/242	NT	6.9%	coding (602/1068 nt)	PP_3925	hypothetical protein
	?	NC_002947	= 4430864	43 (0.820)					coding (634/1068 nt)	PP_3925	hypothetical protein
*	?	NC_002947	4433951 =	50 (0.900)	5 (0.100)	5/238	NT	10.4%	intergenic (+99/‑64)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
	?	NC_002947	4433995 =	40 (0.780)					intergenic (+143/‑20)	PP_3928/PP_3929	hypothetical protein/hypothetical protein
*	?	NC_002947	= 4466973	36 (0.650)	3 (0.060)	3/246	NT	7.4%	coding (716/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA
	?	NC_002947	= 4466996	40 (0.750)					coding (739/1362 nt)	nhaA‑II	Na(+)/H(+) antiporter NhaA
*	?	NC_002947	4504474 =	73 (1.320)	5 (0.090)	5/248	NT	6.7%	coding (232/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase
	?	NC_002947	4504519 =	68 (1.270)					coding (277/360 nt)	PP_3994	TusC‑like tRNA 2‑thiouridine(34) synthase
*	?	NC_002947	= 4528871	52 (0.940)	4 (0.080)	3/240	NT	8.2%	coding (471/1173 nt)	PP_4017	hypothetical protein
	?	NC_002947	= 4528919	41 (0.790)					coding (519/1173 nt)	PP_4017	hypothetical protein
*	?	NC_002947	4536483 =	NA (NA)	6 (0.110)	4/242	NT	13.7%	coding (196/360 nt)	PP_4024	transposase
	?	NC_002947	= 4627665	40 (0.720)					coding (217/360 nt)	PP_4092	transposase
*	?	NC_002947	= 4579666	54 (0.980)	4 (0.080)	4/246	NT	6.7%	coding (445/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
	?	NC_002947	= 4579721	60 (1.130)					coding (390/2211 nt)	glgB	1,4‑alpha‑glucan branching enzyme
*	?	NC_002947	4647557 =	9 (0.160)	4 (0.100)	4/178	NT	43.9%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647665 =	4 (0.100)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4647595	9 (0.160)	6 (0.160)	5/178	NT	54.0%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4647625	4 (0.100)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	4662033 =	39 (0.700)	6 (0.120)	5/240	NT	14.7%	coding (897/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
	?	NC_002947	4662125 =	33 (0.640)					coding (989/2715 nt)	nuoG	NADH‑quinone oxidoreductase subunit G
*	?	NC_002947	= 4690131	43 (0.780)	3 (0.060)	3/244	NT	6.0%	coding (1011/1605 nt)	yejF	microcin C ABC transporter ATP‑binding protein
	?	NC_002947	= 4690205	53 (1.000)					coding (1085/1605 nt)	yejF	microcin C ABC transporter ATP‑binding protein
*	?	NC_002947	4712124 =	45 (0.810)	3 (0.060)	3/244	NT	6.7%	coding (356/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	4712160 =	41 (0.780)					coding (392/2115 nt)	PP_4171	hypothetical protein
*	?	NC_002947	= 4724051	53 (0.960)	3 (0.060)	3/240	NT	5.7%	coding (65/483 nt)	yigI	hypothetical protein
	?	NC_002947	= 4724089	50 (0.960)					coding (27/483 nt)	yigI	hypothetical protein
*	?	NC_002947	= 4725720	63 (1.140)	3 (0.060)	3/240	NT	5.6%	coding (113/750 nt)	PP_4183	membrane protein
	?	NC_002947	= 4725792	42 (0.810)					coding (41/750 nt)	PP_4183	membrane protein
*	?	NC_002947	4739198 =	36 (0.650)	4 (0.080)	3/246	NT	10.2%	intergenic (‑77/‑276)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
	?	NC_002947	4739238 =	36 (0.680)					intergenic (‑117/‑236)	sdhC/gltA	succinate dehydrogenase membrane b‑556 subunit/citrate synthase
*	?	NC_002947	4748455 =	36 (0.650)	3 (0.060)	3/244	NT	8.3%	coding (159/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748523 =	32 (0.610)					coding (227/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
*	?	NC_002947	4755127 =	57 (1.030)	4 (0.080)	4/238	NT	6.7%	coding (368/1965 nt)	pvdT	pyoverdine ABC transporter ATP‑binding protein/permease
	?	NC_002947	4755170 =	59 (1.150)					coding (411/1965 nt)	pvdT	pyoverdine ABC transporter ATP‑binding protein/permease
*	?	NC_002947	4808174 =	0 (0.000)	17 (0.420)	12/186	NT	45.3%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	41 (1.020)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4808179	0 (0.000)	13 (0.260)	13/232	NT	38.8%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	41 (0.820)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	= 4832916	72 (1.300)	4 (0.070)	4/248	NT	5.6%	coding (275/1014 nt)	pvdY	hydroxyproline acetylase
	?	NC_002947	= 4832957	66 (1.230)					coding (234/1014 nt)	pvdY	hydroxyproline acetylase
*	?	NC_002947	= 4841622	49 (0.880)	3 (0.060)	3/242	NT	6.7%	coding (546/609 nt)	ccoO‑II	cbb3‑type cytochrome c oxidase subunit
	?	NC_002947	= 4841652	37 (0.710)					coding (576/609 nt)	ccoO‑II	cbb3‑type cytochrome c oxidase subunit
*	?	NC_002947	4845761 =	66 (1.190)	4 (0.070)	4/250	NT	6.5%	coding (511/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	4845823 =	51 (0.940)					coding (573/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
*	?	NC_002947	4847141 =	48 (0.870)	3 (0.060)	3/244	NT	6.3%	coding (1891/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	4847177 =	43 (0.810)					coding (1927/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
*	?	NC_002947	4850646 =	53 (0.960)	4 (0.080)	4/246	NT	7.0%	coding (377/735 nt)	fnrA	DNA‑binding transcriptional dual regulator
	?	NC_002947	4850683 =	55 (1.030)					coding (414/735 nt)	fnrA	DNA‑binding transcriptional dual regulator
*	?	NC_002947	= 4860136	55 (0.990)	4 (0.080)	3/234	NT	7.1%	coding (914/2331 nt)	ligA	DNA ligase
	?	NC_002947	= 4860160	54 (1.070)					coding (890/2331 nt)	ligA	DNA ligase
*	?	NC_002947	4863050 =	64 (1.160)	5 (0.100)	4/242	NT	8.2%	coding (2823/3489 nt)	smc	chromosome partition protein Smc
	?	NC_002947	4863108 =	52 (0.990)					coding (2765/3489 nt)	smc	chromosome partition protein Smc
*	?	NC_002947	4881961 =	52 (0.940)	4 (0.080)	3/242	NT	7.6%	coding (1044/1356 nt)	uacT	uric acid permease
	?	NC_002947	4882028 =	48 (0.920)					coding (1111/1356 nt)	uacT	uric acid permease
*	?	NC_002947	= 4889595	27 (0.490)	4 (0.090)	4/202	NT	14.5%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889632	26 (0.600)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	= 4896398	25 (0.450)	5 (0.110)	5/214	NT	17.3%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896445	27 (0.580)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4913179	59 (1.070)	4 (0.080)	4/244	NT	6.2%	coding (1520/1989 nt)	ccmF	holocytochrome c synthetase
	?	NC_002947	= 4913195	64 (1.210)					coding (1504/1989 nt)	ccmF	holocytochrome c synthetase
*	?	NC_002947	4915929 =	54 (0.980)	3 (0.060)	3/240	NT	6.6%	coding (159/768 nt)	ccmC	protoheme IX reservoir complex subunit
	?	NC_002947	4915983 =	35 (0.670)					coding (105/768 nt)	ccmC	protoheme IX reservoir complex subunit
*	?	NC_002947	= 4926807	52 (0.940)	3 (0.060)	3/246	NT	5.7%	coding (1075/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
	?	NC_002947	= 4926840	49 (0.920)					coding (1042/1113 nt)	cheBA	chemotaxis response regulator protein‑glutamate methylesterase
*	?	NC_002947	4951669 =	53 (0.960)	3 (0.060)	3/248	NT	5.4%	coding (604/1266 nt)	fliK	flagellar hook‑length control protein FliK
	?	NC_002947	4951723 =	54 (1.010)					coding (550/1266 nt)	fliK	flagellar hook‑length control protein FliK
*	?	NC_002947	= 4956132	56 (1.010)	3 (0.060)	3/242	NT	5.6%	coding (623/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4956158	49 (0.940)					coding (597/1374 nt)	fliI	flagellum‑specific ATP synthase
*	?	NC_002947	4960320 =	58 (1.050)	5 (0.090)	5/250	NT	7.7%	coding (151/1779 nt)	fliF	flagellar M‑ring protein
	?	NC_002947	4960368 =	64 (1.180)					coding (103/1779 nt)	fliF	flagellar M‑ring protein
*	?	NC_002947	4960665 =	39 (0.700)	3 (0.060)	3/242	NT	7.2%	coding (154/333 nt)	fliE	flagellar hook‑basal body complex protein FliE
	?	NC_002947	4960707 =	40 (0.760)					coding (112/333 nt)	fliE	flagellar hook‑basal body complex protein FliE
*	?	NC_002947	= 4963777	33 (0.600)	3 (0.060)	3/242	NT	9.8%	intergenic (‑123/+105)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	= 4963829	24 (0.460)					intergenic (‑175/+53)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
*	?	NC_002947	= 4979899	33 (0.600)	4 (0.080)	4/246	NT	10.3%	coding (311/741 nt)	flgF	flagellar basal‑body rod protein FlgF
	?	NC_002947	= 4979934	38 (0.710)					coding (276/741 nt)	flgF	flagellar basal‑body rod protein FlgF
*	?	NC_002947	= 4990033	44 (0.790)	4 (0.080)	4/242	NT	8.1%	coding (1099/1242 nt)	PP_4399	glutamine synthetase
	?	NC_002947	= 4990061	49 (0.940)					coding (1071/1242 nt)	PP_4399	glutamine synthetase
*	?	NC_002947	4997480 =	50 (0.900)	4 (0.080)	3/242	NT	7.9%	coding (621/999 nt)	PP_4405	sensory box protein
	?	NC_002947	4997537 =	46 (0.880)					coding (564/999 nt)	PP_4405	sensory box protein
*	?	NC_002947	5080220 =	53 (0.960)	3 (0.060)	3/240	NT	6.4%	intergenic (‑85/+83)	csrA/lysC	carbon storage regulator/aspartokinase
	?	NC_002947	5080257 =	38 (0.730)					intergenic (‑122/+46)	csrA/lysC	carbon storage regulator/aspartokinase
*	?	NC_002947	= 5134678	30 (0.540)	3 (0.060)	3/246	NT	10.2%	coding (262/600 nt)	PP_4520	hypothetical protein
	?	NC_002947	= 5134729	24 (0.450)					coding (211/600 nt)	PP_4520	hypothetical protein
*	?	NC_002947	5162502 =	40 (0.720)	4 (0.080)	4/224	NT	11.8%	intergenic (+25/+176)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	5162542 =	25 (0.520)					intergenic (+65/+136)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5170967 =	65 (1.170)	4 (0.070)	4/250	NT	5.8%	coding (1196/1308 nt)	PP_4548	oxidoreductase
	?	NC_002947	5171006 =	67 (1.240)					coding (1235/1308 nt)	PP_4548	oxidoreductase
*	?	NC_002947	= 5175311	63 (1.140)	6 (0.110)	6/248	NT	9.2%	coding (114/945 nt)	PP_4551	alpha/beta family hydrolase
	?	NC_002947	= 5175355	57 (1.060)					coding (158/945 nt)	PP_4551	alpha/beta family hydrolase
*	?	NC_002947	5210219 =	37 (0.670)	4 (0.080)	4/224	NT	10.3%	intergenic (‑85/+93)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
	?	NC_002947	5210310 =	37 (0.760)					intergenic (‑176/+2)	rnd/PP_4592	ribonuclease D/metal dependent hydrolase
*	?	NC_002947	= 5244707	46 (0.830)	3 (0.060)	3/248	NT	5.7%	coding (114/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5244765	55 (1.030)					coding (172/834 nt)	hmgR	Hmg transcriptional repressor
*	?	NC_002947	5273698 =	71 (1.280)	5 (0.100)	5/242	NT	7.4%	coding (845/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	5273737 =	58 (1.110)					coding (884/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
*	?	NC_002947	= 5297700	57 (1.030)	5 (0.090)	5/244	NT	8.3%	coding (226/567 nt)	PP_4671	hypothetical protein
	?	NC_002947	= 5297712	56 (1.060)					coding (214/567 nt)	PP_4671	hypothetical protein
*	?	NC_002947	= 5382076	47 (0.850)	3 (0.060)	3/246	NT	6.4%	coding (179/483 nt)	smpB	SsrA‑binding protein
	?	NC_002947	= 5382099	43 (0.810)					coding (202/483 nt)	smpB	SsrA‑binding protein
*	?	NC_002947	= 5387199	39 (0.700)	3 (0.060)	3/240	NT	7.7%	coding (709/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	= 5387221	35 (0.670)					coding (731/2811 nt)	dld2	D‑lactate dehydrogenase
*	?	NC_002947	5448944 =	69 (1.250)	3 (0.060)	3/232	NT	5.2%	intergenic (‑45/‑188)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	5449034 =	48 (0.960)					intergenic (‑135/‑98)	PP_4786/ybeZ	hypothetical protein/nucleoside triphosphate hydrolase domain‑containing protein
*	?	NC_002947	5477090 =	26 (0.470)	7 (0.190)	6/174	NT	41.7%	intergenic (+3/+109)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	5477189 =	2 (0.050)					intergenic (+102/+10)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	5496079 =	58 (1.050)	4 (0.080)	3/246	NT	6.9%	coding (606/1332 nt)	cobG	precorrin‑3B synthase
	?	NC_002947	5496115 =	52 (0.980)					coding (570/1332 nt)	cobG	precorrin‑3B synthase
*	?	NC_002947	= 5496396	42 (0.760)	3 (0.060)	3/240	NT	6.9%	coding (289/1332 nt)	cobG	precorrin‑3B synthase
	?	NC_002947	= 5496434	42 (0.810)					coding (251/1332 nt)	cobG	precorrin‑3B synthase
*	?	NC_002947	5497113 =	65 (1.170)	4 (0.080)	4/242	NT	6.3%	coding (186/1212 nt)	cobL	precorrin‑6Y C(5,15)‑methyltransferase
	?	NC_002947	5497153 =	57 (1.090)					coding (226/1212 nt)	cobL	precorrin‑6Y C(5,15)‑methyltransferase
*	?	NC_002947	= 5502917	54 (0.980)	3 (0.060)	3/236	NT	5.1%	coding (365/432 nt)	PP_4837	hypothetical protein
	?	NC_002947	= 5502938	61 (1.200)					coding (386/432 nt)	PP_4837	hypothetical protein
*	?	NC_002947	= 5514375	44 (0.790)	5 (0.090)	4/248	NT	10.8%	coding (270/516 nt)	mnaT	L‑amino acid N‑acyltransferase
	?	NC_002947	= 5514430	40 (0.750)					coding (325/516 nt)	mnaT	L‑amino acid N‑acyltransferase
*	?	NC_002947	5520633 =	53 (0.960)	4 (0.080)	4/244	NT	7.2%	coding (679/882 nt)	PP_4853	DMT superfamily permease
	?	NC_002947	5520679 =	53 (1.000)					coding (725/882 nt)	PP_4853	DMT superfamily permease
*	?	NC_002947	= 5538697	49 (0.880)	3 (0.060)	3/242	NT	5.8%	coding (2289/2355 nt)	PP_4872	hypothetical protein
	?	NC_002947	= 5538719	52 (0.990)					coding (2267/2355 nt)	PP_4872	hypothetical protein
*	?	NC_002947	5545321 =	NA (NA)	21 (0.390)	20/252	NT	44.1%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	27 (0.490)					coding (19/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	= 5545666	NA (NA)	12 (0.220)	11/250	NT	31.3%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	5621244 =	27 (0.490)					coding (20/774 nt)	PP_4939	hypothetical protein
*	?	NC_002947	5552330 =	42 (0.760)	3 (0.060)	3/242	NT	7.5%	coding (1559/1566 nt)	PP_4882	iron ABC transporter permease
	?	NC_002947	5552377 =	34 (0.650)					intergenic (+40/+621)	PP_4882/PP_5717	iron ABC transporter permease/hypothetical protein
*	?	NC_002947	= 5572520	34 (0.610)	3 (0.060)	3/242	NT	7.1%	coding (245/543 nt)	orn	oligoribonuclease
	?	NC_002947	= 5572559	46 (0.880)					coding (206/543 nt)	orn	oligoribonuclease
*	?	NC_002947	= 5583793	58 (1.050)	4 (0.080)	4/242	NT	6.6%	coding (1939/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	= 5583844	58 (1.110)					coding (1888/2259 nt)	parC	DNA topoisomerase IV subunit A
*	?	NC_002947	= 5618172	42 (0.760)	4 (0.070)	4/248	NT	8.3%	coding (480/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	= 5618204	48 (0.890)					coding (448/1176 nt)	wzy	O‑antigen polymerase
*	?	NC_002947	= 5647392	48 (0.870)	6 (0.120)	4/238	NT	10.9%	coding (196/738 nt)	PP_4955	hypothetical protein
	?	NC_002947	= 5647427	53 (1.030)					coding (161/738 nt)	PP_4955	hypothetical protein
*	?	NC_002947	5654307 =	54 (0.980)	4 (0.080)	4/244	NT	7.7%	coding (168/1164 nt)	pgk	phosphoglycerate kinase
	?	NC_002947	5654350 =	45 (0.850)					coding (125/1164 nt)	pgk	phosphoglycerate kinase
*	?	NC_002947	= 5661040	37 (0.670)	5 (0.100)	5/236	NT	12.0%	coding (665/1701 nt)	ligB	DNA ligase B
	?	NC_002947	= 5661069	39 (0.760)					coding (694/1701 nt)	ligB	DNA ligase B
*	?	NC_002947	= 5669426	57 (1.030)	5 (0.100)	4/228	NT	8.6%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669447	55 (1.120)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
*	?	NC_002947	5671615 =	43 (0.780)	4 (0.090)	4/208	NT	12.7%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	20 (0.450)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
*	?	NC_002947	5672990 =	69 (1.250)	6 (0.110)	5/246	NT	8.7%	coding (233/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
	?	NC_002947	5673033 =	60 (1.130)					coding (276/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
*	?	NC_002947	5682683 =	54 (0.980)	4 (0.080)	4/244	NT	7.4%	coding (4210/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	5682711 =	48 (0.910)					coding (4182/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
*	?	NC_002947	= 5691327	78 (1.410)	7 (0.130)	6/248	NT	8.3%	coding (747/954 nt)	gshB	glutathione synthetase
	?	NC_002947	= 5691353	79 (1.470)					coding (773/954 nt)	gshB	glutathione synthetase
*	?	NC_002947	= 5695392	72 (1.300)	4 (0.080)	4/244	NT	5.6%	coding (116/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	= 5695439	65 (1.230)					coding (163/1272 nt)	pyrC'	dihydroorotase‑like protein
*	?	NC_002947	= 5698743	27 (0.490)	7 (0.150)	5/222	NT	23.2%	intergenic (+33/‑134)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	= 5698792	23 (0.480)					intergenic (+82/‑85)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	= 5745483	56 (1.010)	4 (0.080)	4/242	NT	6.7%	coding (382/2451 nt)	glgP	glycogen phosphorylase
	?	NC_002947	= 5745511	58 (1.110)					coding (354/2451 nt)	glgP	glycogen phosphorylase
*	?	NC_002947	= 5774063	40 (0.720)	3 (0.060)	3/244	NT	7.2%	coding (626/657 nt)	betI	choline‑responsive transcriptional repressor BetI
	?	NC_002947	= 5774094	39 (0.740)					coding (657/657 nt)	betI	choline‑responsive transcriptional repressor BetI
*	?	NC_002947	5785230 =	32 (0.580)	4 (0.080)	4/244	NT	11.2%	coding (234/1461 nt)	PP_5068	hypothetical protein
	?	NC_002947	5785292 =	33 (0.630)					coding (296/1461 nt)	PP_5068	hypothetical protein
*	?	NC_002947	5811343 =	55 (0.990)	4 (0.080)	4/244	NT	7.9%	coding (671/2220 nt)	priA	primosome assembly protein
	?	NC_002947	5811376 =	41 (0.780)					coding (704/2220 nt)	priA	primosome assembly protein
*	?	NC_002947	= 5817718	69 (1.250)	4 (0.080)	4/236	NT	5.6%	coding (236/1011 nt)	pilT	twitching motility protein
	?	NC_002947	= 5817756	71 (1.390)					coding (198/1011 nt)	pilT	twitching motility protein
*	?	NC_002947	5895417 =	61 (1.100)	4 (0.070)	4/248	NT	5.8%	coding (759/819 nt)	cysU	sulfate ABC transporter permease CysT
	?	NC_002947	5895454 =	72 (1.340)					coding (722/819 nt)	cysU	sulfate ABC transporter permease CysT
*	?	NC_002947	= 5897126	56 (1.010)	5 (0.090)	4/246	NT	8.9%	coding (263/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 5897162	48 (0.900)					coding (227/1029 nt)	sbp‑II	sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 5915212	61 (1.100)	3 (0.060)	3/242	NT	5.4%	coding (348/1299 nt)	argA	amino acid N‑acetyltransferase
	?	NC_002947	= 5915261	48 (0.920)					coding (299/1299 nt)	argA	amino acid N‑acetyltransferase
*	?	NC_002947	= 5946013	50 (0.900)	4 (0.070)	4/248	NT	7.7%	coding (996/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
	?	NC_002947	= 5946060	47 (0.880)					coding (949/1467 nt)	ubiD	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase
*	?	NC_002947	= 5968431	30 (0.540)	4 (0.090)	3/212	NT	15.2%	coding (141/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	= 5968491	20 (0.440)					coding (81/360 nt)	PP_5723	hypothetical protein
*	?	NC_002947	5976444 =	66 (1.190)	4 (0.080)	4/240	NT	6.7%	coding (245/1491 nt)	yifB	ATP‑dependent chelatase
	?	NC_002947	5976487 =	49 (0.940)					coding (288/1491 nt)	yifB	ATP‑dependent chelatase
*	?	NC_002947	5982220 =	53 (0.960)	3 (0.060)	3/244	NT	5.0%	coding (2865/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5982264 =	63 (1.190)					coding (2909/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
*	?	NC_002947	= 5983463	63 (1.140)	5 (0.090)	5/248	NT	7.6%	coding (4108/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	= 5983500	60 (1.120)					coding (4145/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
*	?	NC_002947	= 5989280	50 (0.900)	3 (0.060)	3/228	NT	5.4%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	61 (1.240)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein
*	?	NC_002947	5992984 =	54 (0.980)	4 (0.070)	4/248	NT	5.9%	coding (975/1263 nt)	opdB	proline‑specific outer membrane porin D
	?	NC_002947	5993073 =	76 (1.420)					coding (1064/1263 nt)	opdB	proline‑specific outer membrane porin D
*	?	NC_002947	= 6019024	49 (0.880)	4 (0.080)	4/244	NT	7.4%	coding (176/1074 nt)	dadX	alanine racemase
	?	NC_002947	= 6019092	54 (1.020)					coding (108/1074 nt)	dadX	alanine racemase
*	?	NC_002947	6031197 =	50 (0.900)	5 (0.090)	4/244	NT	9.8%	coding (51/1590 nt)	dppA‑IV	dipeptide transport protein
	?	NC_002947	6031232 =	44 (0.830)					coding (86/1590 nt)	dppA‑IV	dipeptide transport protein
*	?	NC_002947	6058144 =	59 (1.070)	4 (0.080)	3/242	NT	6.5%	coding (1341/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase
	?	NC_002947	6058224 =	60 (1.150)					coding (1421/2079 nt)	recG	junction‑specific ATP‑dependent DNA helicase
*	?	NC_002947	6060431 =	62 (1.120)	8 (0.160)	5/228	NT	13.1%	intergenic (+67/+114)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	6060518 =	51 (1.030)					intergenic (+154/+27)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
*	?	NC_002947	= 6087572	46 (0.830)	3 (0.060)	3/238	NT	6.6%	intergenic (+23/‑207)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
	?	NC_002947	= 6087636	42 (0.820)					intergenic (+87/‑143)	oruR/aphA	ornithine utilization transcriptional regulator/acetylpolyamine aminohydrolase
*	?	NC_002947	6161701 =	25 (0.450)	3 (0.060)	3/248	NT	9.8%	coding (109/312 nt)	PP_5403	hypothetical protein
	?	NC_002947	6161732 =	31 (0.580)					coding (140/312 nt)	PP_5403	hypothetical protein