mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 94 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6001629 | 77 (1.390) | 3 (0.060) | 3/238 | NT | 4.0% | coding (672/1299 nt) | amaA | L‑pipecolate oxidase |
| ? | NC_002947 | = 6001668 | 72 (1.400) | coding (633/1299 nt) | amaA | L‑pipecolate oxidase | |||||
| * | ? | NC_002947 | 5498306 = | 77 (1.390) | 3 (0.060) | 3/246 | NT | 4.3% | coding (175/1095 nt) | cbiD | cobalt‑precorrin‑6A synthase |
| ? | NC_002947 | 5498340 = | 61 (1.150) | coding (209/1095 nt) | cbiD | cobalt‑precorrin‑6A synthase | |||||
| * | ? | NC_002947 | = 5193931 | 60 (1.080) | 3 (0.060) | 3/244 | NT | 5.0% | coding (252/1179 nt) | PP_4574 | hypothetical protein |
| ? | NC_002947 | = 5193981 | 58 (1.100) | coding (302/1179 nt) | PP_4574 | hypothetical protein | |||||
| * | ? | NC_002947 | 5164438 = | 68 (1.230) | 3 (0.060) | 3/246 | NT | 4.9% | coding (3442/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | 5164483 = | 50 (0.940) | coding (3397/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
| * | ? | NC_002947 | 5148568 = | 61 (1.100) | 3 (0.060) | 3/242 | NT | 4.9% | intergenic (‑29/+67) | PP_5695/PP_4534 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 5148621 = | 59 (1.130) | intergenic (‑82/+14) | PP_5695/PP_4534 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_002947 | 4946071 = | 74 (1.340) | 3 (0.060) | 3/248 | NT | 4.7% | coding (510/1143 nt) | flhB | flagellin export apparatus substrate specificity protein |
| ? | NC_002947 | 4946110 = | 50 (0.930) | coding (471/1143 nt) | flhB | flagellin export apparatus substrate specificity protein | |||||
| * | ? | NC_002947 | 4904204 = | 72 (1.300) | 6 (0.110) | 4/254 | NT | 8.7% | coding (630/663 nt) | PP_4312 | hypothetical protein |
| ? | NC_002947 | 4904256 = | 54 (0.980) | coding (578/663 nt) | PP_4312 | hypothetical protein | |||||
| * | ? | NC_002947 | = 4663890 | 49 (0.880) | 3 (0.060) | 3/246 | NT | 6.1% | coding (43/1008 nt) | nuoH | NADH‑quinone oxidoreductase subunit H |
| ? | NC_002947 | = 4663917 | 46 (0.860) | coding (70/1008 nt) | nuoH | NADH‑quinone oxidoreductase subunit H | |||||
| * | ? | NC_002947 | 4407246 = | 62 (1.120) | 4 (0.080) | 3/246 | NT | 6.5% | coding (598/1299 nt) | PP_3889 | putative Phage integrase |
| ? | NC_002947 | 4407282 = | 56 (1.050) | coding (562/1299 nt) | PP_3889 | putative Phage integrase | |||||
| * | ? | NC_002947 | 4159489 = | 74 (1.340) | 3 (0.060) | 3/246 | NT | 4.2% | coding (229/1374 nt) | PP_3662 | hypothetical protein |
| ? | NC_002947 | 4159528 = | 67 (1.260) | coding (268/1374 nt) | PP_3662 | hypothetical protein | |||||