New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4638146	69 (0.870)	5 (0.070)	5/238	NT	7.1%	intergenic (+26/‑32)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein
	?	NC_000913	= 4638170	67 (0.930)					intergenic (+50/‑8)	creC/creD	sensory histidine kinase in two‑component regulatory system with CreB or PhoB/inner membrane protein

CAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4637989‑4638146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGCGACCTCAC  <  NC_000913/4638170‑4638023                                                                                                                                                                                                                                                                                                                    CAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCA                                                                                                                                                                >  4:287243/1‑148  AAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACATCACATAGCTTCAAATTCTTCCCACA                                                                                                                                                              >  3:230532/1‑149    AAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA                                                                                                                                                            <  7:227184/149‑1    AAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATA                                                                                                                                                            <  4:304200/149‑1    AAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACA                                                                                                                                                              >  8:229295/1‑147          AGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC                                                                                                                                                      >  4:278844/1‑149          AGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC                                                                                                                                                      <  3:108824/149‑1          AGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATACTTCCCACATAGTCTTC                                                                                                                                                      <  8:105747/149‑1                                           GCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTAT                                                                                                                     >  2:148590/1‑149                                             CCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGT                                                                                                                   <  1:148590/149‑1                                               GTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGG                                                                                                                 <  7:229295/149‑1                                               GTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTG                                                                                                                  <  5:40231/148‑1                                               GTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTG                                                                                                                  >  6:40231/1‑148                                                                                                                                                    ACATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGG            >  7:148435/1‑149                                                                                                                                                     CATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGG           >  8:156560/1‑149                                                                                                                                                      ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGC          <  8:225234/149‑1                                                                                                                                                      ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGG            <  4:186957/147‑1                                                                                                                                                      ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGG            <  4:191576/147‑1                                                                                                                                                      ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGG            >  3:186957/1‑147                                                                                                                                                      ATAGTCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGG            >  3:191576/1‑147                                                                                                                                                          TCTTCTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGCGACC      >  6:145109/1‑149                                                                                                                                                              CTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGCGACCTCAC  >  3:96574/1‑149                                                                                                                                                              CTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGCGACCTCAC  >  3:287243/1‑149                                                                                                                                                                                                                                                                                                                    CAAAAAAGCAGCGGTCTGGGGTTGGCGTTCGTCAGTGAGGTCGCCCGTTTGTTTAACGGCGAAGTCACGCTGCGCAACGTGCAGGAAGGTGGCGTGCTGGCCTCGCTTCGACTTCACCGTCACTTCACATAGCTTCAAATTCTTCCCACATAGTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4637989‑4638146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatagtcttcTCCTTTGCAATGGCAGCAGGATACGAAGACTATGTGGGAAGAATTTGAAGCTATGTGAAGTGACGGTGAAGTCGAAGCGAGGCCAGCACGCCACCTTCCTGCACGTTGCGCAGCGTGACTTCGCCGTTAAACAAACGGGCGACCTCAC  <  NC_000913/4638170‑4638023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.