mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 455,600 | C→A | G156G (GGC→GGA) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 3,176,112 | G→A | P241L (CCC→CTC) | cpdA ← | 3',5' cAMP phosphodiesterase |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,636,114 | C→A | intergenic (+221/+94) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| RA | 3,768,131 | A→T | pseudogene (911/945 nt) | rhsJ → | Rhs‑family protein |
| RA | 3,964,929 | C→T | E234E (GAG→GAA) | rhlB ← | ATP‑dependent RNA helicase |
| RA | 3,992,784 | C→A | Y544* (TAC→TAA) | cyaA → | adenylate cyclase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 123061 | 127537 | 4477 | 10 [9] | [9] 11 | [aceE]–[aceF] | [aceE],[aceF] |
| * | * | ÷ | NC_000913 | 2518099 | 2518203 | 105 | 11 [9] | [9] 10 | [alaX]–[alaW] | [alaX],[alaW] |
| * | * | ÷ | NC_000913 | 3423797–3424542 | 3424542 | 1–746 | 10 [6] | [9] 10 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3886788 | NA (NA) | 9 (0.250) | 8/270 | 2.9 | NA | noncoding (11/29 nt) | REP281 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP281 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3886799 | NA (NA) | noncoding (22/29 nt) | REP281 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP281 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||