New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3010438	48 (0.950)	8 (0.170)	7/240	4.9	16.3%	coding (411/1386 nt)	hyuA	D‑stereospecific phenylhydantoinase
	?	NC_000913	= 3010453	37 (0.780)					coding (426/1386 nt)	hyuA	D‑stereospecific phenylhydantoinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACCATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGTGCACCCGGAAAATGATG  >  NC_000913/3010290‑3010586                                                                                                                                                     |                                                                                                                                                     caacCATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTcgac                                                                                                                                                      >  6:231245/1‑149 (MQ=255)   acCATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTcgacg                                                                                                                                                     >  7:159326/1‑148 (MQ=255)    ccATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTcgacga                                                                                                                                                    >  8:110388/1‑148 (MQ=255)     cATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCATGCAATCCTcgactat                                                                                                                                                   >  3:135625/1‑145 (MQ=255)     cATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGaaa                                                                                                                                                  <  1:102665/149‑1 (MQ=255)         attGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATccc                                                                                                                                              >  7:161987/1‑149 (MQ=255)            gACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCga                                                                                                                                            <  8:161987/148‑1 (MQ=255)               cATATTGGATTTGGCCCAAACGGCTGTCTGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCga                                                                                                                                            <  6:206519/145‑1 (MQ=255)               cATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATAAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCga                                                                                                                                            >  5:206519/1‑145 (MQ=255)                atatGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCga                                                                                                                                            <  1:130413/144‑1 (MQ=255)                atatGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCga                                                                                                                                            >  2:130413/1‑144 (MQ=255)                atatGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATa                                                                                                                                       <  5:231245/149‑1 (MQ=255)                 tatGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTcgac                                                                                                                                                      <  2:92633/133‑1 (MQ=255)                 tatGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTcgac                                                                                                                                                      >  1:92633/1‑133 (MQ=255)                    gggATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTc                                                                                                                                    >  4:32740/1‑148 (MQ=255)                                aaaCGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACt                                                                                                                         >  2:57615/1‑147 (MQ=255)                                   cGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCa                                                                                                                    <  7:110388/149‑1 (MQ=255)                                           ggTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTaaa                                                                                                            <  8:159326/149‑1 (MQ=255)                                            gTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAAc                                                                                                           >  6:130170/1‑149 (MQ=255)                                                 gCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTAt                                                                                                      <  5:130170/149‑1 (MQ=255)                                                     tCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTaaa                                                                                                            <  6:30092/139‑1 (MQ=255)                                                     tCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTaaa                                                                                                            >  5:30092/1‑139 (MQ=255)                                                           ggAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTAt                                                                                             >  7:71378/1‑148 (MQ=255)                                                            gAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTAt                                                                                             >  3:160201/1‑147 (MQ=255)                                                            gAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTAt                                                                                             <  4:160201/147‑1 (MQ=255)                                                             aGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCaa                                                                                          <  8:71378/149‑1 (MQ=255)                                                               gTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGaggaa                                                                                                                              >  7:151420/1‑111 (MQ=255)                                                               gTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGATTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGaggaa                                                                                                                              <  8:151420/111‑1 (MQ=255)                                                                    tCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACaaa                                                                                    <  3:32740/148‑1 (MQ=255)                                                                    tCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAAc                                                                                   <  4:36092/149‑1 (MQ=255)                                                                         gTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAAc                                                                              >  5:127347/1‑149 (MQ=255)                                                                             tGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATg                                                                          <  1:57615/149‑1 (MQ=255)                                                                              gccgccCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAAc                                                                              <  4:87338/144‑1 (MQ=255)                                                                              gccgccCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAAc                                                                              >  3:87338/1‑144 (MQ=255)                                                                                         aGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGc                                                              <  6:127347/149‑1 (MQ=255)                                                                                          gCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAg                                                                     <  5:165009/141‑1 (MQ=255)                                                                                          gCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAg                                                                     >  6:165009/1‑141 (MQ=255)                                                                                                        cAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCa                                                             <  6:22145/135‑1 (MQ=255)                                                                                                        cAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCa                                                             >  5:22145/1‑135 (MQ=255)                                                                                                        cAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCt                                               >  5:225287/1‑149 (MQ=255)                                                                                                        cAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCt                                               >  3:171866/1‑149 (MQ=255)                                                                                                         aGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTg                                                               >  4:35798/1‑132 (MQ=255)                                                                                                         aGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTg                                                               <  3:35798/132‑1 (MQ=255)                                                                                                          gCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTg                                             <  4:171866/149‑1 (MQ=255)                                                                                                                aCGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGaa                                       >  5:147445/1‑149 (MQ=255)                                                                                                                                      tCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTAc                                                     <  2:92983/113‑1 (MQ=255)                                                                                                                                          gCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGTGCAccc             >  6:172639/1‑149 (MQ=255)                                                                                                                                                cTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGgcgcg                              >  3:72878/1‑126 (MQ=255)                                                                                                                                                cTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGgcgcg                              <  4:72878/126‑1 (MQ=255)                                                                                                                                                   gacgaAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGt                   <  2:69150/134‑1 (MQ=255)                                                                                                                                                   gacgaAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGt                   >  1:69150/1‑134 (MQ=255)                                                                                                                                                     cgaAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGTGCACCCGGAAAatgatg  <  6:225287/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAACCATTATTGACCATATGGGATTTGGCCCAAACGGCTGTCGGTTACGCCATCAACTGGAGGTTTATCGTGGTTATGCCGCCCATAAAGCGGTCATCGATTACAGCTTTCACGGTGTGATCCAGCACATTAATCACGCAATCCTCGACGAAATCCCGATGATAGTCGAGGAAGGACTGAGCAGTTTTAAACTCTATTTAACCTATCAATACAAACTCAACGATGACGAGGTTTTGCAGGCATTACGCCGCTTGCATGAATCCGGCGCGCTGACCACCGTGCACCCGGAAAATGATG  >  NC_000913/3010290‑3010586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.