| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,706,847 | T→C | 6.4% | V167A (GTC→GCC) | rsxB → | SoxR iron‑sulfur cluster reduction factor component; putative iron‑sulfur protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,706,847 | 0 | T | C | 6.4% | 187.4 / 2.8 | 62 | V167A (GTC→GCC) | rsxB | SoxR iron‑sulfur cluster reduction factor component; putative iron‑sulfur protein |
| Reads supporting (aligned to +/- strand): ref base T (34/24); new base C (2/2); total (36/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGAT > NC_000913/1706703‑1706992 | gCTGCACTAAATGTATTCCGGCGTGTCCGGTAGACGACATCTTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCGCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGc < 6:64767/148‑1 (MQ=255)gCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCg > 2:155461/1‑147 (MQ=255) tGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAg > 8:109488/1‑148 (MQ=255) cACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGaaa > 7:237290/1‑149 (MQ=255) tAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAacac > 5:352779/1‑149 (MQ=255) tAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGACAGACGCCCTGCATCTCGTTGCAACCGGTCGAAGAAacac > 6:34249/1‑149 (MQ=255) aaTGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCt < 3:246044/149‑1 (MQ=255) aaTGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCt < 2:233402/149‑1 (MQ=255) tATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACt < 8:256596/149‑1 (MQ=255) ttCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCCCTGCATCTCGTTGCAACCGGCCGCAGAAACACCTGACTcc > 6:15465/1‑149 (MQ=255) ttCAGGCGAGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTGGCAACCGGCCGCAGAACCCCCTGCCTcc > 6:20584/1‑149 (MQ=255) aGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGGATACGGTAATGAGTGATGTCTGTACGGGCTGCAAGTTATGAGTTGATCCGTGCCCGCCGCACTGCCTCTCGTTGCAACCGGTCGCAGAAACCCCTGACTCCTg > 1:135209/1‑148 (MQ=255) tCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATgg < 4:271490/148‑1 (MQ=255) aTCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAac < 8:183977/116‑1 (MQ=255) aTCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAac > 7:183977/1‑116 (MQ=255) aTCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCAt > 3:299169/1‑149 (MQ=255) gTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTc < 1:28895/148‑1 (MQ=255) ttGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCt > 8:109504/1‑136 (MQ=255) ttGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCt < 7:109504/136‑1 (MQ=255) gcgcTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTcc < 3:248272/119‑1 (MQ=255) gcgcTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTcc > 4:248272/1‑119 (MQ=255) gcTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCg > 7:193579/1‑149 (MQ=255) cccGTGCCATGCATACTGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCTCTGCATCTCGTTGCAACCGGCCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATc < 5:20584/149‑1 (MQ=255) cccGGGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCTCTGCATCTCGTTGCAACCGGCCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATc < 5:15465/149‑1 (MQ=255) gTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCAtt > 6:274506/1‑149 (MQ=255) tGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTTTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTc < 5:257240/149‑1 (MQ=255) cATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCg < 5:274506/149‑1 (MQ=255) tGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTg < 8:118152/149‑1 (MQ=255) cATACGGTAATGAGTGCTCTCTCTACGGGGTGCAAGTTATGTGTTGATCCGTGCCCGACGCACTGGCTCTCGGTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTgg < 2:135209/148‑1 (MQ=255) tACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGaa > 3:9929/1‑148 (MQ=255) gTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCATGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAACTGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCa < 8:368121/149‑1 (MQ=255) aTGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTg > 6:11208/1‑138 (MQ=255) aTGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTg < 5:11208/138‑1 (MQ=255) aTGAGTGATCTCTGTACGGGATGCAATTTATGTGTTGATCCGTGCCCGACGCACTTCATCTAGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCAATCCCTTGGAACACCATGc > 2:55928/1‑149 (MQ=255) gTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCtt > 8:51338/1‑147 (MQ=255) gTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTaa < 4:299169/149‑1 (MQ=255) tctcTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTa > 8:287117/1‑149 (MQ=255) tctGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACCCCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTAtt > 2:366884/1‑149 (MQ=255) cAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCa < 8:193579/147‑1 (MQ=255) aTTTATGTGTTGATCCGTGCCCTACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGaa > 4:285459/1‑148 (MQ=255) gtTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGCACACCATTCCCGTGCGTATCATTCCCGGGGAACCCCATGCTTAAGTTATTCTCTGCATTCAGAAataataaca > 5:51262/1‑147 (MQ=255) gtTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAaaaataaaa > 6:365793/1‑149 (MQ=255) aTCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGAGCTGAACACCATTCCCGTGCGTATCTGTCCCGTGGAACACCCTGCTGTAGGTATTCTCTGCATTCAGAAAAAATAAAATCTg > 1:192544/1‑149 (MQ=255) cGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTggg < 4:9929/148‑1 (MQ=255) gTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACCCCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATGCTCTGCATTCAGAAAAAATAAAATCAGGGAt > 1:380450/1‑149 (MQ=255) gACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAaaaata < 8:35556/132‑1 (MQ=255) gACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAaaaata > 7:35556/1‑132 (MQ=255) aCGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCAGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGt < 3:79668/107‑1 (MQ=255) aCGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCAGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGt > 4:79668/1‑107 (MQ=255) aCTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggcgg > 8:328665/1‑149 (MQ=255) aCTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAAcggcgg > 3:213266/1‑149 (MQ=255) aCTGCATCTCGTTGCAACCGGTCGCAGAAACACATGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACGATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCACcggcgg > 5:242397/1‑149 (MQ=255) cATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCATGGAAATGGGATCTGAACACAATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGca < 1:55928/147‑1 (MQ=255) ctcGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGcatccat > 3:342581/1‑149 (MQ=255) ttGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTgg > 3:76701/1‑124 (MQ=255) ttGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTgg < 4:76701/124‑1 (MQ=255) aaCCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCg > 5:150730/1‑147 (MQ=255) aaCCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGga < 3:363281/149‑1 (MQ=255) aaCCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGGGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCACCGGCGGCATCCATCCACCg > 1:330681/1‑147 (MQ=255) ccGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCg > 3:215839/1‑145 (MQ=255) ccGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGgaga < 7:287117/149‑1 (MQ=255) cGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGAt > 2:169893/1‑149 (MQ=255) | GCTGCACTAAATGTATTCAGGCGTGTCCGGTAGACGCCATCGTTGGCGCTACCCGTGCCATGCATACGGTAATGAGTGATCTCTGTACGGGCTGCAATTTATGTGTTGATCCGTGCCCGACGCACTGCATCTCGTTGCAACCGGTCGCAGAAACACCTGACTCCTGGAAATGGGATCTGAACACCATTCCCGTGCGTATCATTCCCGTGGAACACCATGCTTAAGTTATTCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGAT > NC_000913/1706703‑1706992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |