New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2300551	38 (1.060)	5 (0.140)	5/240	3.8	11.3%	coding (2203/2487 nt)	napA	nitrate reductase, periplasmic, large subunit
	?	NC_000913	= 2300578	42 (1.210)					coding (2176/2487 nt)	napA	nitrate reductase, periplasmic, large subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTTACGACCGCGCGTTTCAACAATCGAGATCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATCCGGTTTACCGTAGAAC  >  NC_000913/2300403‑2300699                                                                                                                                                     |                                                                                                                                                     cGGTTACGACCGCGCGTTTCAACAATCGAGATCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTgg                                                                                                                                                      <  3:94148/149‑1 (MQ=255)                      acaaTCGAGATCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGcc                                                                                                                                 <  2:86499/149‑1 (MQ=255)                        aaTCGAGATCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCgg                                                                                                                               >  7:27792/1‑149 (MQ=255)                            gagaTCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGgtgt                                                                                                                            <  2:193596/148‑1 (MQ=255)                             agaTCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGc                                                                                                                          <  8:54006/149‑1 (MQ=255)                                 cACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGt                                                                                                                      >  5:154282/1‑149 (MQ=255)                                 cACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGt                                                                                                                      >  4:96451/1‑149 (MQ=255)                                       gCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTc                                                                                                                  >  3:131239/1‑147 (MQ=255)                                           cGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAc                                                                                                            <  6:154282/149‑1 (MQ=255)                                           cGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAAc                                                                                                            <  5:71698/149‑1 (MQ=255)                                                      cactttcactttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTag                                                                                                 <  5:176219/149‑1 (MQ=255)                                                              ctttGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCcac                                                                                         <  4:131239/149‑1 (MQ=255)                                                                   tCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTc                                                                                    <  4:127774/149‑1 (MQ=255)                                                                       cACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTAc                                                                                >  1:24796/1‑149 (MQ=255)                                                                         cGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCTGTGCAGTTCTGTTACACGTCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTActc                                                                              <  2:164245/149‑1 (MQ=255)                                                                         cGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTActc                                                                              <  8:27792/149‑1 (MQ=255)                                                                             gcAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCa                                                                          >  2:48720/1‑149 (MQ=255)                                                                                                   cAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGtt                                                    <  2:24796/149‑1 (MQ=255)                                                                                                        ggTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagagag                                                                                             <  1:147514/103‑1 (MQ=255)                                                                                                        ggTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTagagag                                                                                             >  2:147514/1‑103 (MQ=255)                                                                                                          tGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATgg                                             <  3:96451/149‑1 (MQ=255)                                                                                                           gAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTa                                                                                                  <  3:140616/95‑1 (MQ=255)                                                                                                           gAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTa                                                                                                  >  4:140616/1‑95 (MQ=255)                                                                                                                aaCAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGc                                       >  6:79975/1‑149 (MQ=255)                                                                                                                 aCAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGa                                                                                                              >  2:21744/1‑77 (MQ=255)                                                                                                                 aCAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGa                                                                                                              <  1:21744/77‑1 (MQ=255)                                                                                                                         gCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCAc                              >  6:134771/1‑149 (MQ=255)                                                                                                                           ttCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGc                                       <  1:164228/138‑1 (MQ=255)                                                                                                                           ttCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGc                                       >  2:164228/1‑138 (MQ=255)                                                                                                                               gggAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTc                                                   >  7:11160/1‑122 (MQ=255)                                                                                                                               gggAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTc                                                   <  8:11160/122‑1 (MQ=255)                                                                                                                               gggAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCttt                        >  6:131974/1‑149 (MQ=255)                                                                                                                                    ggCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCAt                   <  5:79975/149‑1 (MQ=255)                                                                                                                                      cgcgGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATcc                 <  5:131974/149‑1 (MQ=255)                                                                                                                                         ggTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATCCGGt              >  5:97703/1‑149 (MQ=255)                                                                                                                                          gTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATCCGGtt             <  5:134771/149‑1 (MQ=255)                                                                                                                                                   tGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATgg                                             <  4:6350/108‑1 (MQ=255)                                                                                                                                                   tGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATgg                                             >  3:6350/1‑108 (MQ=255)                                                                                                                                                     gTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATCCGGTTTACCGTAGAAc  >  1:46649/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGGTTACGACCGCGCGTTTCAACAATCGAGATCACTTCGCCACGGCGAGAAACCACTTTCACTTTGTCGCCACGGCGCAGATCGCGCGCTTTCGCATCCAGCGGGTGAATAAACAGGACCGCTTCCGGGAAGGCGCGGTGCAGTTCTGGTACACGGCGAGTCATACTGCCGGTGTGCCAGTGCTCCAGAACGCGTCCGGTAGAGAGCCACAGGTCGTACTCTTCATCCGGTGCTTCCGCCGCCGGTTCGAATGGCAGTGCGAAGATCACCGCTTTGCCATCCGGTTTACCGTAGAAC  >  NC_000913/2300403‑2300699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.