New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2987089 =	55 (1.540)	4 (0.130)	4/220	3.9	8.3%	intergenic (+13/‑447)	yqeG/yqeH	putative transporter/putative LuxR family transcriptional regulator
	?	NC_000913	2987120 =	40 (1.260)					intergenic (+44/‑416)	yqeG/yqeH	putative transporter/putative LuxR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTGCCATGATACTTTTCATCATGCCTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACATCTTAAATAAGACTA  >  NC_000913/2986942‑2987235                                                                                                                                                     |                                                                                                                                                   aTTGCGATGATACTTTTCATCATGCCTACGCTGGCAACGGATCTCATGCCGGCGGTTAATGCCTGGCGTGCCATCGGATATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATGAGTTGTG‑Ga                                                                                                                                                    <  8:61338/148‑1 (MQ=255)     ccATGATACTTTTCATCATGCCTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGtt                                                                                                                                               <  6:18631/149‑1 (MQ=255)     ccATGATACTTTTCATCATGCCTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGtt                                                                                                                                               <  2:60179/149‑1 (MQ=255)                       tGCCTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAAtttt                                                                                                                             <  4:91284/149‑1 (MQ=255)                          cTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGTAGCAATTTTGaa                                                                                                                          <  5:154627/149‑1 (MQ=255)                           taatcTGTCAAAGTATATCATCCCTGCGATTAAACCCTGGCGTTACATCGGAAATCTGATTAAGCTGATCTTGGGTATCCTGTGCGTAACGGTAATGTTCTTTAGCTAATATCAGTTTTG‑TATGGTTCAAAATTGATACAATTTTGAAc                                                                                                                         >  4:14419/5‑149 (MQ=255)                             cGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAAGCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAAcca                                                                                                                       >  4:15260/1‑149 (MQ=255)                             cGCTGTCAACGTATCTCATCACGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTGCAATGGTTCAAAATTGTAGCAATTTTGaa                                                                                                                          <  7:144475/147‑1 (MQ=255)                                  tCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCAGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGTAGCAATTTTGAAccatcca                                                                                                                   <  5:169858/148‑4 (MQ=255)                                  tCAACGTATCTCATCCCGGCGCTCAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAAt                                                                                                                                         <  6:32927/126‑1 (MQ=255)                                  tCAACGTATCTCATCCCGGCGCTCAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAAt                                                                                                                                         >  5:32927/1‑126 (MQ=255)                                      cGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCAtttt                                                                                                              >  6:101726/1‑149 (MQ=255)                                       gTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCAttttt                                                                                                             <  3:15260/149‑1 (MQ=255)                                          tctcATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCa                                                                                                           >  6:142956/1‑148 (MQ=255)                                               tCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAAtt                                                                                                                                        <  3:152587/114‑1 (MQ=255)                                               tCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAAtt                                                                                                                                        >  4:152587/1‑114 (MQ=255)                                                     cgcTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCAttt                                                                                               <  3:14419/149‑1 (MQ=255)                                                          aaaCCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGtta                                                                                           <  5:142956/148‑1 (MQ=255)                                                            aCCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGttatta                                                                                        >  2:70712/1‑149 (MQ=255)                                                                   cGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCAcc                                                                                 <  5:101726/149‑1 (MQ=255)                                                                          tCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCa                                                                           <  3:71061/148‑1 (MQ=255)                                                                          tCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCa                                                                           >  4:71061/1‑148 (MQ=255)                                                                          tCGGAAATCTGATTACGCTGATCGTGGGTACCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCAc                                                                          >  7:8119/1‑149 (MQ=255)                                                                            ggAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATg                                                                                                                                                  >  2:133018/1‑75 (MQ=255)                                                                                    gATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑Ga                                                                                                                                                    <  5:56047/65‑1 (MQ=255)                                                                                    gATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑Ga                                                                                                                                                    >  6:56047/1‑65 (MQ=255)                                                                                     aTTACGCTGATCGTGGGTACCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTtctctc                                                                   <  8:8119/145‑1 (MQ=255)                                                                                            tGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATcc                                                          >  2:55168/1‑147 (MQ=255)                                                                                            tGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTa                                                        >  7:72275/1‑149 (MQ=255)                                                                                               tCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑AATGGTTCAAAATTGTAGCAATTTTGaa                                                                                                                          <  8:7942/80‑1 (MQ=37)                                                                                                  tGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTtctctc                                                                   <  4:148540/132‑1 (MQ=255)                                                                                                  tGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTtctctc                                                                   >  3:148540/1‑132 (MQ=255)                                                                                                      tATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCag                                              >  5:15719/1‑149 (MQ=255)                                                                                                         ccTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAAccattcca                                                                                                                  >  7:104568/1‑78 (MQ=255)                                                                                                         ccTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAAccattcca                                                                                                                  <  8:104568/78‑1 (MQ=255)                                                                                                          cTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagtta                                           <  1:70712/148‑1 (MQ=255)                                                                                                           tgtgCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagttagt                                         >  8:50687/1‑149 (MQ=255)                                                                                                                gTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAac                                    <  6:15719/149‑1 (MQ=255)                                                                                                                 tATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGt                                                                                                                                                >  3:13792/1‑40 (MQ=255)                                                                                                                 tATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGt                                                                                                                                                <  4:13792/40‑1 (MQ=255)                                                                                                                     ggTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAacacac                                >  5:114699/1‑148 (MQ=255)                                                                                                                       tAATGTTCTTTAGCTAATATCAGTTTTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACaaa                             <  7:50687/149‑1 (MQ=255)                                                                                                                         aTGTTCTTTAGCTAATATCAGTTTTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAaga                           <  5:12411/149‑1 (MQ=255)                                                                                                                         aTGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGta                                                     >  4:79363/1‑123 (MQ=255)                                                                                                                           gTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagtta                                           <  3:114165/131‑1 (MQ=255)                                                                                                                           gTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagtta                                           >  4:114165/1‑131 (MQ=255)                                                                                                                              cTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCt                      >  1:47186/1‑149 (MQ=255)                                                                                                                                    cTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACAt                >  4:6868/1‑149 (MQ=255)                                                                                                                                    cTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACAt                >  8:37170/1‑149 (MQ=255)                                                                                                                                    cTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACAt                >  2:109372/1‑149 (MQ=255)                                                                                                                                         atCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagtta                                           <  6:96836/117‑1 (MQ=255)                                                                                                                                         atCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCagtta                                           >  5:96836/1‑117 (MQ=255)                                                                                                                                         atCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACATCTTa            >  3:35911/1‑148 (MQ=255)                                                                                                                                             gTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACATCTTAAATaa       <  6:114699/149‑1 (MQ=255)                                                                                                                                                    gATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACATCTTAAATAAGACTa  <  8:72275/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ATTGCCATGATACTTTTCATCATGCCTACGCTGTCAACGTATCTCATCCCGGCGCTTAAACCCTGGCGTTCCATCGGAAATCTGATTACGCTGATCGTGGGTATCCTGTGCGTATCGGTAATGTTCTTTAGCTAATATCAGTTGTG‑GATGGTTCAAAATTGCTACAATTTTGAACCATTCCATTTTTCATAATATTCATTTGTTATTATTCCACCCTATCACTTCTCTCGTCATATCCTAGTATTATCAGTTAGTTAAACACACAAAGAGATCTGAACATCTTAAATAAGACTA  >  NC_000913/2986942‑2987235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.