Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,033 IS1 (+) +9 bp intergenic (‑111/‑486) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1293033 =0 (0.000)102 (0.810) 78/280 0.5 100% intergenic (‑111/‑494) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 1978503 = NA (NA)noncoding (768/768 nt) IS1 repeat region
* ? NC_000913 = 12930410 (0.000)106 (0.840) 78/280 0.5 100% intergenic (‑119/‑486) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 211 total aligned reads displayed.

TACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292886‑1293181
                                                                                                                                                   |                                                                                                                                                    
tACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtg                                                                                                                                                     >  7:396251/1‑149 (MQ=255)
  cGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTtgtg                                                                                                                                                   >  1:138087/1‑149 (MQ=255)
    agcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggtgtcattaccTGTgcc                                                                                                                                                 >  2:24660‑M1/144‑149 (MQ=255)
           ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggt                                                                                                                                           >  7:302104‑M1/1‑145 (MQ=255)
           ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGAAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAAGGTAAGGAAATCAAAATTGTTCTTTATTTTGTGACGCCggt                                                                                                                                           >  4:151484‑M1/1‑145 (MQ=255)
            tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAACCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtga                                                                                                                                         >  5:349561‑M1/1‑144 (MQ=255)
            tCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtga                                                                                                                                         >  4:111619‑M1/1‑144 (MQ=255)
             acctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCaataaa                                                                                                                                        >  5:130219‑M1/135‑149 (MQ=255)
              cctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCaataaat                                                                                                                                       >  6:282838‑M1/134‑149 (MQ=255)
              cctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCaataaa                                                                                                                                        <  5:282838‑M1/15‑1 (MQ=255)
              aGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGAAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatg                                                                                                                                       >  5:434406‑M1/1‑142 (MQ=255)
                tgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAatat                                                                                                                                     <  2:406746‑M1/18‑1 (MQ=255)
                  ttttAAGTTCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgc                                                                                                                                   <  2:286410‑M1/149‑12 (MQ=255)
                  ttttAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgc                                                                                                                                   >  5:531593‑M1/1‑138 (MQ=255)
                   atctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatggggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCtt                                                                                                                                  >  3:182237‑M1/129‑149 (MQ=255)
                        aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTc                                                                                                                               >  6:324544‑M1/124‑147 (MQ=255)
                         tGCTTCGCTCATTGTAGTAATCTCAAACTTTTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaactt                                                                                                                             <  8:439814‑M1/148‑18 (MQ=255)
                         ggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATa                                                                                                                            >  3:490910‑M1/123‑149 (MQ=255)
                            ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGCGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttact                                                                                                                          >  3:361038‑M1/1‑128 (MQ=255)
                                cctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAg                                                                                                                     <  2:333625‑M1/34‑1 (MQ=255)
                                 ctggcacggctgggacggaagtcgctggcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGc                                                                                                                    >  2:387158‑M1/115‑149 (MQ=255)
                                   aTTGTAGTAATCTCAAACTTTTATTGGGGTGGTTTGTTGAGGTAATAATAGAGCATTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  <  4:291230‑M1/149‑29 (MQ=255)
                                   aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  <  1:1039‑M1/149‑29 (MQ=255)
                                   aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  <  8:396251‑M1/149‑29 (MQ=255)
                                   aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  <  1:387833‑M1/149‑29 (MQ=255)
                                     cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattacctgt                                                                                                                                                    >  1:59791‑M1/111‑113 (MQ=255)
                                      acggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGa                                                                                                                <  5:117222‑M1/39‑1 (MQ=255)
                                        ggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGaaaa                                                                                                             >  7:11129‑M1/108‑149 (MQ=255)
                                         gtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCATTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatga                                                                                                            >  3:35520‑M1/1‑115 (MQ=255)
                                          taATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgat                                                                                                           >  6:7724‑M1/1‑114 (MQ=255)
                                            aTCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatg                                                                                                          <  3:205172‑M1/148‑37 (MQ=255)
                                             ggacggaagtcgctgtcgttctcaaaatcggttgagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgc                                                                                                        >  7:362620‑M1/103‑149 (MQ=255)
                                              gacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAcgcg                                                                                                       >  2:124617‑M1/102‑149 (MQ=255)
                                               tcAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgta                                                                                                               >  5:231536‑M1/1‑109 (MQ=255)
                                                 ggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCa                                                                                                    >  4:133512‑M1/99‑149 (MQ=255)
                                                 aaaCTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtt                                                                                                     <  4:214393‑M1/148‑42 (MQ=255)
                                                     gtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTAATAAAATTAGCCAGAAAAGACGCGGCata                                                                                                  <  2:57488‑M1/53‑1 (MQ=255)
                                                       atatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag                                                                                               <  5:318417‑M1/148‑48 (MQ=255)
                                                       atatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                                                                                <  3:111619‑M1/147‑47 (MQ=255)
                                                        tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  <  3:146892‑M1/128‑29 (MQ=255)
                                                         atTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagt                                                                                                                  >  1:4321‑M1/1‑99 (MQ=255)
                                                            tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCt                                                                                           >  1:333625‑M1/88‑147 (MQ=255)
                                                            tcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                         >  2:6446‑M1/88‑149 (MQ=255)
                                                             gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                                                                         >  2:13873‑M1/1‑95 (MQ=255)
                                                             gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                                                                         >  2:5155‑M1/1‑95 (MQ=255)
                                                             gggTGGTTTGTGGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                                                                         <  2:45059‑M1/148‑54 (MQ=255)
                                                                  gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg                                                                                   >  4:34137‑M1/1‑90 (MQ=255)
                                                                            gTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                         >  8:209336‑M1/1‑80 (MQ=255)
                                                                              aataatAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt                                                                           >  6:436730‑M1/1‑78 (MQ=255)
                                                                                   gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                                   <  2:46755‑M1/52‑1 (MQ=255)
                                                                                   gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                                   >  1:46755‑M1/65‑116 (MQ=255)
                                                                                   gcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAc                                                                  <  8:369329‑M1/85‑1 (MQ=255)
                                                                                        ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc                                                             <  3:137160‑M1/149‑82 (MQ=255)
                                                                                         caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAgg                                                            <  3:455957‑M1/91‑1 (MQ=255)
                                                                                         caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAg                                                             >  1:307450‑M1/59‑148 (MQ=255)
                                                                                          ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct                                                           >  6:434167‑M1/1‑66 (MQ=255)
                                                                                          aaagtcaacgggcattatctgaacataaaacactatcaataagttggagtcattaccTCTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATACCCCTATTTACACCGATGATTTCTCAGAACGTTAGGt                                                           <  8:425274‑M1/92‑1 (MQ=255)
                                                                                            aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctacagtggcttctgtttctatcagctgtccctcc                                                         >  6:496461‑M1/1‑64 (MQ=255)
                                                                                              aTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg                                                       >  5:76901‑M1/1‑62 (MQ=255)
                                                                                                tCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                     >  6:134311‑M1/1‑60 (MQ=255)
                                                                                                 tcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGa                                                              <  7:87943‑M1/89‑1 (MQ=255)
                                                                                                   gggcattatctgaacataaaacactatcaataagttgtagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  7:159639‑M1/49‑149 (MQ=255)
                                                                                                   gggcattatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                  >  1:550840‑M1/49‑149 (MQ=255)
                                                                                                       attatctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                        <  1:201442‑M1/79‑1 (MQ=255)
                                                                                                         cAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact                                             <  5:134311‑M1/148‑98 (MQ=255)
                                                                                                          atctgaacataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGAtt                                            >  7:136062‑M1/42‑148 (MQ=255)
                                                                                                             tgaacataaaacactatcaataagttgtagtcattaccTGTGCAGACAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcagca                                                                   >  4:83362‑M1/39‑122 (MQ=255)
                                                                                                             tgaacataaaacactatcaataagttggagtcattaccTGTGCCTCCAATAAATATCTTTTCATAAAATTATCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTtctcagaa                                                                   <  3:83362‑M1/84‑3 (MQ=255)
                                                                                                             tgaacataaaaaaatatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTATCCAGAAAAGACTCGGCATATAGCACTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATg                                        >  3:448315‑M1/39‑149 (MQ=255)
                                                                                                                cAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt                                     <  1:243644‑M1/149‑106 (MQ=255)
                                                                                                                 aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtg                                    <  6:336035‑M1/149‑107 (MQ=255)
                                                                                                                  ataaaacactatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTg                                               >  5:437325‑M1/34‑137 (MQ=255)
                                                                                                                   gAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagcggcttctgtttctatcagctgtccctc                                                          >  8:1652‑M1/1‑41 (MQ=255)
                                                                                                                     aTGTAAGGAATTAAAAATTGTTCTTTATTTTGTGCCGCCgttgatgctgcctacttactgatttagtgtatgatggtgtttttgatgtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggtgtggtgc                                <  5:455079‑M1/149‑111 (MQ=255)
                                                                                                                         actatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                               >  2:74176‑M1/27‑82 (MQ=255)
                                                                                                                         actatcaataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAg                                                                                               <  1:74176‑M1/56‑1 (MQ=255)
                                                                                                                          aGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaa                            <  7:41011‑M1/148‑115 (MQ=255)
                                                                                                                           ggAATTCAAAATGGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtctgctggtgtttttgaggggcgccagtcgcgtctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                          <  3:319737‑M1/149‑117 (MQ=255)
                                                                                                                            gAATTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacgg                         <  4:35520‑M1/149‑118 (MQ=255)
                                                                                                                             aaTTCAAAATTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgattgtgtttttgaggtgctccagtggcttctgtttctatcatctgtccctcctgttcagctactgacggggtggggcgtaacggc                        <  5:496461‑M1/149‑119 (MQ=255)
                                                                                                                               aataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACTCGGCATATAGCCCTATTTACACAGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                          <  5:405653‑M1/125‑1 (MQ=255)
                                                                                                                               aataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                          <  6:354168‑M1/125‑1 (MQ=255)
                                                                                                                                ataagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGAt                     <  8:103846‑M1/130‑1 (MQ=255)
                                                                                                                                 taagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACCCCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgaga                      <  4:218107‑M1/129‑1 (MQ=255)
                                                                                                                                 taagttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgaga                      >  3:218107‑M1/19‑147 (MQ=255)
                                                                                                                                  aaaaTTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaag                   >  6:517204‑M1/1‑26 (MQ=255)
                                                                                                                                   agttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                 <  8:247411‑M1/102‑1 (MQ=255)
                                                                                                                                    gttggagtcattaccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATc                 <  2:108672‑M1/134‑1 (MQ=255)
                                                                                                                                    aaTTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagca                 <  4:361038‑M1/149‑126 (MQ=255)
                                                                                                                                    aaTTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagca                 <  7:209336‑M1/149‑126 (MQ=255)
                                                                                                                                    aaTTGTTCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct                                                           >  4:140751‑M1/1‑24 (MQ=255)
                                                                                                                                         ttCTTTTTTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                                                                    <  1:519427‑M1/77‑59 (MQ=255)
                                                                                                                                         ttCTTTATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgcc            >  2:354586‑M1/1‑19 (MQ=255)
                                                                                                                                              tATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggac        <  3:405023‑M1/148‑135 (MQ=255)
                                                                                                                                              tATTTTGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggac        <  4:452902‑M1/148‑135 (MQ=255)
                                                                                                                                               aTTTTGTGCCGCCggtgattctgccaacttactgatttagtgtatgatggtgtttatgaggtgctccagtggcttctgtttctatcagctgtccctcctgttctgctactgacgggttggtgcgtaaaggcaaaagcaccgccggaca       >  5:90386‑M1/1‑13 (MQ=255)
                                                                                                                                                ttttGTGCCGCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacat      >  1:159325‑M1/1‑12 (MQ=255)
                                                                                                                                                 ccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAGGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGTAGATTATCGTAGGCTgacgac    <  2:214519‑M1/147‑1 (MQ=255)
                                                                                                                                                 ccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGga                        <  4:507214‑M1/127‑1 (MQ=255)
                                                                                                                                                 ccTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGga                        >  3:507214‑M1/3‑129 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
TACGGATGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCT  >  NC_000913/1292886‑1293181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.