| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4459603 | 24 (0.660) | 6 (0.180) | 6/226 | 2.3 | 20.1% | pseudogene (114/366 nt) | cybC | pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459617 | 25 (0.730) | pseudogene (128/366 nt) | cybC | pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
AAGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCGGAAATGAAAGATTTCCGCCACGGTTTCGACATTCTGGTCGGTCAGAT > NC_000913/4459468‑4459749 | aaGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCaaa < 5:15814/148‑1 (MQ=255) gtgtAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCaa > 8:12552/1‑145 (MQ=255) gtgtAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCaa < 7:12552/145‑1 (MQ=255) gtAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGAcgc < 2:7855‑M2/149‑4 (MQ=255) aaCTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATgc < 1:7855/149‑1 (MQ=255) cTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGaa > 1:69149/1‑142 (MQ=255) cTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGaa < 2:69149/142‑1 (MQ=255) ttGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCa > 1:38076/1‑149 (MQ=255) gTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCaaa > 6:33215/1‑148 (MQ=255) ttCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTaa < 3:119880/107‑1 (MQ=255) ttCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTaa > 4:119880/1‑107 (MQ=255) tttGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGa < 2:116956/100‑1 (MQ=255) tttGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGa > 1:116956/1‑100 (MQ=255) tgctgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgcgttatcggcttttt > 2:65791‑M1/1‑70 (MQ=255) tgctgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgcgttatcggcttttt < 1:65791‑M1/101‑32 (MQ=255) tgctgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGAcgcg > 1:64105‑M2/1‑84 (MQ=255) tgctgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGAcgcg < 2:64105‑M2/88‑5 (MQ=255) tgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCaaaaa < 8:14286/124‑1 (MQ=255) tgATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCaaaaa > 7:14286/1‑124 (MQ=255) gAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgc > 8:157149‑M1/1‑60 (MQ=255) gAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgc < 7:157149‑M1/77‑18 (MQ=255) aaTATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGaa > 3:138979/1‑80 (MQ=255) aaTATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGaa < 4:138979/80‑1 (MQ=255) tatGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgcgttatc > 1:47365‑M1/1‑52 (MQ=255) tatGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGtctttgacttgcgccgcgttatc < 2:47365‑M1/75‑24 (MQ=255) ggAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAAcgccg < 2:79427/115‑1 (MQ=255) gAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCgg > 8:40394/1‑148 (MQ=255) aaaCCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATg < 5:145787/77‑1 (MQ=255) aaaCCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATg > 6:145787/1‑77 (MQ=255) aCCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCGGAAAt < 5:33215/149‑1 (MQ=255) gAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCa < 4:22602/105‑1 (MQ=255) gAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCa > 3:22602/1‑105 (MQ=255) aaaaaGCCGATAACGCGGCGCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttcgagatcagca < 1:65791‑M2/101‑71 (MQ=255) aaaaaGCCGATAACGCGGCGCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttcgagatcagca > 2:65791‑M2/1‑31 (MQ=255) aaaaGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCGGAAATGAAAGATTTCCGCCACGGTTTCGACATTc < 7:40394/149‑1 (MQ=255) gATAACGCGGCGCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccata > 1:47365‑M2/1‑23 (MQ=255) gATAACGCGGCGCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccata < 2:47365‑M2/75‑53 (MQ=255) cgcgtctttgacttgcgccgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttcgagatcagca > 1:64105‑M1/1‑4 (MQ=255) cgcgtctttgacttgcgccgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttcgagatcagca < 2:64105‑M1/88‑85 (MQ=255) gcgtctttgacttgcgccgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttcgagatcagcagcaaatgacgccgaactgaataccaacgaggagactgcaagaatagttccttttttatttac < 2:7855‑M1/149‑147 (MQ=255) gcggcgCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttc < 7:157149‑M2/77‑61 (MQ=255) gcggcgCAAGTCAAAGAcgcgttatcggctttttcgaccacttttaaattgtcgttgagggtttccatattgtcttc > 8:157149‑M2/1‑17 (MQ=255) | AAGTGTAAATAAAAAAGGAACTATTCTTGCAGTCTCCTCGTTGGTATTCAGTTCGGCGTCATTTGCTGCTGATCTCGAAGACAATATGGAAACCCTCAACGACAATTTAAAAGTGGTCGAAAAAGCCGATAACGCGGCGCAAGTCAAAGACGCGTTAACGAAGATGCGCGCCGCAGCGCTGGATGCGCAAAAAGCAACGCCGCCGAAGCTCGAAGATAAATCACCGGACAGCCCGGAAATGAAAGATTTCCGCCACGGTTTCGACATTCTGGTCGGTCAGAT > NC_000913/4459468‑4459749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |