New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	225468 =	2 (0.060)	5 (0.150)	5/222	2.5	73.0%	intergenic (+11/‑32)	ileV/alaV	tRNA‑Ile/tRNA‑Ala
	?	NC_000913	= 3427068	NA (NA)					intergenic (‑35/+8)	alaU/ileU	tRNA‑Ala/tRNA‑Ile

CGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTC  >  NC_000913/225324‑225605                                                                                                                                                 |                                                                                                                                          tctgaagtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCaaa                                                                                                                                       <  1:161277‑M1/5‑1 (MQ=255)   tgaagtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAAtt                                                                                                                                     >  2:45680‑M1/143‑149 (MQ=255)     aagtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   >  5:156084‑M1/141‑149 (MQ=255)     aagtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   <  4:70858‑M1/9‑1 (MQ=255)       gtattttttatttaatcactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   <  5:76242‑M1/9‑1 (MQ=255)                       cactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   >  8:72769‑M1/123‑131 (MQ=255)                       cactacagagatggtggagctatgcgggatcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   <  7:72769‑M1/9‑1 (MQ=255)                                                   atcgaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGgaga                                                                                     >  6:76242‑M1/95‑149 (MQ=255)                                                      gaaccgcagacctcctgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   <  6:8609‑M1/9‑1 (MQ=255)                                                      gaaccgcagacctcccgcgtgcaaagcaggcgctctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTg                                                                                                                                   >  5:8609‑M1/92‑100 (MQ=255)                                                                                       tctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAAtt                                                                                                                                     <  2:171440‑M1/7‑1 (MQ=255)                                                                                       tctcccagctgagctatagccccataacatgtagttaaaacctcttcaaatttgccgtGCAAAtt                                                                                                                                     >  1:171440‑M1/59‑65 (MQ=255)                                                                                                        agccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGgag                                                                                      >  1:87052‑M1/42‑95 (MQ=255)                                                                                                        agccccataacatgtagttaaaacctcttcaaatttgccgtGCAAATTAGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGgag                                                                                      <  2:87052‑M1/54‑1 (MQ=255)                                                                                                                         ttaaaacctcttcaaatttgccgtGCAAATTTGGAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTtaaa               <  4:164896‑M1/125‑1 (MQ=255)                                                                                                                                 tcttcaaatttgccgtGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATaaaaaa        <  3:13533‑M1/132‑1 (MQ=255)                                                                                                                                    ccAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACt    >  6:88620/1‑149 (MQ=32)                                                                                                                                      aaaTTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTc  <  7:62022/149‑1 (MQ=32)                                                                                                                                                 |                                                                                                                                          CGTACTTTGCAGTGCTCACACAGATTGTCTGATGAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCAAATTTGCACGGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTC  >  NC_000913/225324‑225605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.