mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,715,349 | 0 | C | A | 66.7% | 33.8 / 40.4 | 39 | intergenic (‑29/‑74) | yfiE/eamB | putative DNA‑binding transcriptional regulator/cysteine and O‑acetylserine exporter |
| * | NC_000913 | 2,100,265 | 0 | T | A | 37.5% | 23.2 / 32.3 | 32 | Q335L (CAG→CTG) | gnd | 6‑phosphogluconate dehydrogenase, decarboxylating |
| * | NC_000913 | 4,296,060 | 0 | C | T | 26.1% | 70.9 / 26.8 | 46 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 2,828,569 | 0 | C | A | 24.0% | 48.8 / 12.7 | 25 | intergenic (+53/‑52) | srlD/srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| * | NC_000913 | 2,363,715 | 0 | A | C | 23.8% | 35.9 / 10.1 | 21 | intergenic (‑82/+18) | yfaY/yfaZ | inactive PncC family protein/outer membrane protein, putative porin |
| * | NC_000913 | 2,828,572 | 0 | T | G | 22.2% | 52.1 / 14.8 | 27 | intergenic (+56/‑49) | srlD/srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| * | NC_000913 | 2,828,574 | 0 | C | A | 22.2% | 62.6 / 11.9 | 27 | intergenic (+58/‑47) | srlD/srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| * | NC_000913 | 2,828,577 | 0 | T | G | 22.2% | 52.1 / 14.0 | 27 | intergenic (+61/‑44) | srlD/srlM | sorbitol‑6‑phosphate dehydrogenase/sorbitol=responsive srl operon transcriptional activator |
| * | NC_000913 | 1,840,799 | 0 | G | C | 20.8% | 51.3 / 11.0 | 24 | S202W (TCG→TGG) | ynjF | CDP‑alcohol phosphatidyltransferase family inner membrane protein |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3411602 | 41 (1.210) | 7 (0.230) | 7/224 | 2.8 | 16.4% | intergenic (+35/‑51) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 3411616 | 34 (1.100) | intergenic (+49/‑37) | fis/yhdJ | global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 4542690 | 18 (0.530) | 6 (0.190) | 6/228 | 3.1 | 21.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 26 (0.830) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1908226 | 55 (1.630) | 6 (0.190) | 6/224 | 3.1 | 10.3% | intergenic (‑635/+35) | yobF/yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
| ? | NC_000913 | = 1908236 | 54 (1.750) | intergenic (‑645/+25) | yobF/yebO | DUF2527 family heat‑induced protein/putative inner membrane protein | |||||
| * | ? | NC_000913 | 2804940 = | 34 (1.000) | 6 (0.190) | 6/234 | 3.2 | 16.1% | coding (126/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein |
| ? | NC_000913 | 2804957 = | 30 (0.930) | coding (143/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1718525 = | 40 (1.180) | 6 (0.180) | 6/236 | 3.2 | 12.6% | coding (1078/1110 nt) | anmK | anhydro‑N‑acetylmuramic acid kinase |
| ? | NC_000913 | 1718552 = | 45 (1.390) | coding (1051/1110 nt) | anmK | anhydro‑N‑acetylmuramic acid kinase | |||||
| * | ? | NC_000913 | = 1428264 | NA (NA) | 17 (0.530) | 6/234 | 3.2 | 100% | noncoding (531/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2066866 | 0 (0.000) | noncoding (488/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 17 (0.530) | 6/234 | 3.2 | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 147909 = | 20 (0.590) | 5 (0.160) | 5/226 | 3.4 | 21.6% | intergenic (+39/+35) | yadD/panC | transposase_31 family protein/pantothenate synthetase |
| ? | NC_000913 | 147940 = | 18 (0.580) | intergenic (+70/+4) | yadD/panC | transposase_31 family protein/pantothenate synthetase | |||||
| * | ? | NC_000913 | = 3967987 | 17 (0.500) | 5 (0.160) | 5/228 | 3.5 | 23.4% | coding (72/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3967995 | 17 (0.540) | coding (80/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | 1954428 = | NA (NA) | 3 (0.120) +29 bp |
3/188 | 3.7 | NA | intergenic (+15/+150) | cmoB/torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| ? | NC_000913 | 3639159 = | NA (NA) | intergenic (+18/+226) | pitA/uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B | |||||