mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4285326 = | NA (NA) | 4 (0.040) | 4/510 | NT | 2.8% | noncoding (25/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4285353 = | 140 (1.310) | noncoding (52/77 nt) | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP320 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3897605 = | 104 (0.950) | 4 (0.040) | 3/506 | NT | 3.6% | coding (100/468 nt) | cbrB | PRK09823 family inner membrane protein, creBC regulon |
| ? | NC_000913 | 3897624 = | 111 (1.040) | coding (119/468 nt) | cbrB | PRK09823 family inner membrane protein, creBC regulon | |||||
| * | ? | NC_000913 | = 3544651 | 124 (1.130) | 3 (0.030) | 3/504 | NT | 2.5% | coding (194/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase |
| ? | NC_000913 | = 3544692 | 117 (1.100) | coding (153/771 nt) | bioH | pimeloyl‑ACP methyl ester carboxylesterase | |||||
| * | ? | NC_000913 | 2268434 = | 140 (1.280) | 3 (0.030) | 3/506 | NT | 2.4% | coding (606/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein |
| ? | NC_000913 | 2268515 = | 109 (1.020) | coding (687/987 nt) | yeiR | Zn‑stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein | |||||
| * | ? | NC_000913 | = 1395088 | 107 (0.980) | 3 (0.030) | 3/508 | NT | 2.8% | coding (835/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance |
| ? | NC_000913 | = 1395094 | 105 (0.980) | coding (829/1032 nt) | ynaI | mechanosensitive channel protein, very small conductance | |||||
| * | ? | NC_000913 | = 1374035 | 88 (0.820) | 3 (0.030) +TCT |
3/506 | NT | 3.3% | coding (814/882 nt) | ycjO | putative sugar ABC transporter permease |
| ? | NC_000913 | 1374036 = | 89 (0.810) | coding (815/882 nt) | ycjO | putative sugar ABC transporter permease | |||||
| * | ? | NC_000913 | 1299175 = | 84 (0.770) | 4 (0.040) | 4/522 | NT | 4.5% | coding (578/648 nt) | ychE | UPF0056 family inner membrane protein |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 805887 | 109 (0.990) | 3 (0.030) | 3/508 | NT | 2.8% | noncoding (84/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 805898 | 105 (0.980) | noncoding (95/178 nt) | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | = 417255 | 98 (0.890) | 5 (0.050) | 4/522 | NT | 4.6% | coding (114/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| ? | NC_000913 | 417273 = | 108 (0.980) | coding (132/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR | |||||