| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,217,687 | T→C | 7.2% | K166K (AAA→AAG) | sigO ← | RNA polymerase sigma factor SigO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,217,687 | 0 | T | C | 7.2% | 623.3 / 27.3 | 195 | K166K (AAA→AAG) | sigO | RNA polymerase sigma factor SigO |
| Reads supporting (aligned to +/- strand): ref base T (60/121); new base C (7/7); total (67/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 | |||||||||||
Only 100 of 213 total aligned reads displayed.
GTATTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAG > NZ_CP034943/3217548‑3217824 | gTATTGCAGAGTTTTTTTCTGATCATCGGTGAAACGCATTCAATCAGAGGTTCAATGTCAAATGTATCGTCTGGTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTGC‑GTGCCCCCTTGTTTTGCGCCGGTAGCTGt > 1:4677181/1‑140 (MQ=255) tttagCAGACTTTTTGTGTGATCCTCGGTGAACAGCATTCGATCCGTTGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGTCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGtt < 1:3741282/136‑1 (MQ=255) tagagCAGAGTTTTTTTCTGATCATCGTTTAAAAGCATTCTATCAGATGTTCAATGTCCAATTTATCGTCTTTTTGGTTA‑‑‑TTTCGGTCAAACGGGGCGTTAACAGCTTAA‑TTTCCCCCTTTTTTGGCGCCGCTAGCTGtt < 1:1327794/136‑1 (MQ=255) tATTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGtt < 1:3155846/140‑1 (MQ=255) tATTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGtt < 1:1802251/140‑1 (MQ=255) aTTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGttt > 2:1945329/1‑140 (MQ=255) aTTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGttt > 2:1808041/1‑140 (MQ=255) cAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTg < 1:4399295/140‑1 (MQ=255) cAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTg < 1:7939/140‑1 (MQ=255) agagTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGa > 2:1724359/1‑140 (MQ=255) gagTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGat < 2:1647760/140‑1 (MQ=255) agTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGata > 2:4563439/1‑140 (MQ=255) agTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGata > 2:1604727/1‑140 (MQ=255) agTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGata > 2:2107942/1‑140 (MQ=255) agTTTTTTTCTGATCATCGGCGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGGGTTTTTGGGTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑GTTCCCCCGTTTTTTGGGCCGCTAGCTGTTTTCTGtta > 1:4316686/1‑140 (MQ=255) tttttttCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATAtt > 1:4098882/1‑140 (MQ=255) tttttttCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATAtt > 1:4787643/1‑140 (MQ=255) tttttttCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCGTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATAtt > 1:1878565/1‑140 (MQ=255) tCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAg < 2:2209462/140‑1 (MQ=255) tCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAg < 2:4136885/140‑1 (MQ=255) tGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGcc < 2:4892824/140‑1 (MQ=255) atcatcGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCCAACTGGCCGTTCACAGCGTAG‑TTTGGCCCTTGTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCGAGCCCt > 1:2982538/1‑140 (MQ=255) atcatcGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGc < 2:3791534/137‑1 (MQ=255) atcatcGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCt > 2:1256266/1‑140 (MQ=255) ggTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTa < 2:1087390/140‑1 (MQ=255) tCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCGCCTTTTTTTGCGCCGCTAGCTGTTGTCTGATATTCTCAAGCCCTTTTGTATGAATGTTGgag > 2:2370124/1‑140 (MQ=255) tCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGgag < 1:2940256/140‑1 (MQ=255) tCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGgag > 2:774013/1‑140 (MQ=255) tCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGgag < 2:1758340/140‑1 (MQ=255) aaTCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGtt > 2:1414867/1‑100 (MQ=255) aaTCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGtt < 1:1414867/100‑1 (MQ=255) tCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt < 2:2652863/140‑1 (MQ=255) tCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt < 2:2152199/140‑1 (MQ=255) tCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTATTTATGAATGTTGGAGATGt < 2:1639492/140‑1 (MQ=255) ccAGATCGTCAATGTCAAATTTATCGACATTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGGTCACAGCTTAC‑TTTCCCCCATTTTGGGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGt < 1:1731964/139‑1 (MQ=255) tGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGc < 1:610827/140‑1 (MQ=255) tGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGc < 1:1074809/140‑1 (MQ=255) gTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGcc > 2:64623/1‑140 (MQ=255) gTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGcc > 2:1121471/1‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:208527/2‑140 (MQ=255) ctCAATGTCATAAGTCTCGTCTTTTTGTTTCTTTTTTTGTTCAAACTGGCCGTCCACAGCTTACTTTTCCCCCTTTTTTTGCGCCGCTAACTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGtttt > 2:2557222/2‑140 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:4852965/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 2:3011704/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:2085339/140‑1 (MQ=255) tCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCACAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCgg < 1:381033/140‑1 (MQ=255) cAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCggg > 2:3732280/1‑140 (MQ=255) cacgTCAACTTTATCGTCGTTTTGGCTC‑‑‑TTGTGTTCAAACGGGCCGTTCACAGCGTAC‑TTTCCCCCCTGTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:2898497/137‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:3250789/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:1604727/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:165536/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:2062167/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:2426796/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:4242837/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:3424926/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 1:4486543/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TGTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:3864225/140‑1 (MQ=255) aaTGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TGTCCCCCTTTGTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:4499168/140‑1 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt > 2:4168473/1‑140 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt > 2:1615279/1‑140 (MQ=255) aaTTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTATTTATGAATGTTGTAGATGTTTTGACGGGACTCTCCt > 2:2497522/1‑140 (MQ=255) aaTTTATCGACTTTTTTGTTC‑‑‑TATTGTTAAAACTGGCCTTTCACATCTTAC‑GATACCCCTTTTTTTTCTCCGCTAGCTGTTTTCTGATATAATCAAGACCTTTTTTATGAATATTGGAGATCTTTAGCAGCTACTCACCt > 2:4957565/1‑140 (MQ=255) aaTTTATCGACTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCGTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCACGCCCTTTTTTATGAATGTTGGAGATGCTTTGCCGGGACTCTCCt < 1:1862184/140‑1 (MQ=255) aaTTGAGCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCt < 1:4183483/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:620352/140‑1 (MQ=255) aTCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TGTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGa < 1:2284883/140‑1 (MQ=255) atttttGGTTC‑‑‑TTTTGTTCAAACTGGCCTTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCgg < 2:1177682/139‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 2:1295626/140‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 1:4563439/140‑1 (MQ=255) ttttGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCCTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 2:3442369/140‑1 (MQ=255) tC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCtt > 2:4715563/1‑140 (MQ=255) tC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCGTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCtt > 1:3854229/1‑140 (MQ=255) c‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg < 1:1121471/140‑1 (MQ=255) c‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg < 2:557379/140‑1 (MQ=255) c‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg < 2:44754/140‑1 (MQ=255) gTTCAAACTGGCCGTTCACAGCTTCC‑TGTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCg < 2:321592/140‑1 (MQ=255) gTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCg < 2:810761/140‑1 (MQ=255) tGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCa < 1:546255/140‑1 (MQ=255) gCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa < 2:837806/98‑1 (MQ=255) gCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGa > 1:837806/1‑98 (MQ=255) gCCGTTCACAGCTTAC‑GTTCCCCCTTGTTTTGCGCCGCGAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCAACGTGGCACCATg < 2:4399702/140‑1 (MQ=255) gCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACt > 2:1578509/1‑140 (MQ=255) gCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACt > 2:2020296/1‑140 (MQ=255) aC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCg > 2:1210890/1‑140 (MQ=255) cccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTg > 2:1056439/1‑106 (MQ=255) ccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 2:3854229/140‑1 (MQ=255) ccccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 1:3922512/140‑1 (MQ=255) ccccTTTTTGTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGTAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 1:4021253/140‑1 (MQ=255) ccccTTTATTTGCGCCGCTAGCTGTTTTCTGATATTCTCCCGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCa < 1:1898621/140‑1 (MQ=255) cccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCAc > 2:3635798/1‑140 (MQ=255) ccTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGGCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACg < 1:975840/140‑1 (MQ=255) tttttttGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCATAGTGAATCTGCAAGCTCTTGCATCTTGGCACCATGAAGATAGACTTTCGTCAGCACGCt > 1:2039617/1‑140 (MQ=255) ttGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCtttttt < 1:736230/140‑1 (MQ=255) tGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa > 1:2717133/1‑87 (MQ=255) tGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCa < 2:2717133/87‑1 (MQ=255) gCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTgtcagtc < 2:1227900/140‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:2626778/139‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:2557222/139‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:3734206/139‑1 (MQ=255) acTGCTTTCTGATATTCTCCAGCCCCTTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTTGTTTgtcagtc < 1:1253867/139‑1 (MQ=255) acTGCTTTCTGATAGTCTCCAGCCCCGTTTTATGAATGTTGGAGATGTTTTGTCGGGACTCCCCTAATGAATCTGCAATCTCCTGCATCGTGGCACCGTGAAGATAGACTTTCGTCAGCACACTTTTTGGTTTgtcagtc < 1:1014108/139‑1 (MQ=255) | GTATTGCAGAGTTTTTTTCTGATCATCGGTGAAAAGCATTCAATCAGATGTTCAATGTCAAATTTATCGTCTTTTTGGTTC‑‑‑TTTTGTTCAAACTGGCCGTTCACAGCTTAC‑TTTCCCCCTTTTTTTGCGCCGCTAGCTGTTTTCTGATATTCTCAAGCCCTTTTTTATGAATGTTGGAGATGTTTTGCCGGGACTCTCCTAGTGAATCGGCAATCTCTTGCATCGTGGCACCATGAAGATAGACTTTCGTCAGCACGCTTTTTTGTTTGTCAGTCAG > NZ_CP034943/3217548‑3217824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |