| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,369,578 | C→A | 16.4% | G110W (GGG→TGG) | EO946_RS17410 ← | HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,369,578 | 0 | C | A | 16.4% | 697.0 / 116.4 | 290 | G110W (GGG→TGG) | EO946_RS17410 | HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base C (160/82); new base A (36/12); total (196/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 298 total aligned reads displayed.
TCCATTCTTCCCTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAGGAAAATTGCC > NZ_CP034943/3369441‑3369715 | ttcCCTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGtt > 1:2053892/1‑140 (MQ=255) cccTTCTTGAATCATTAAGGAAAAGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGa > 1:4165780/1‑140 (MQ=255) ccTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGAt < 2:106432/140‑1 (MQ=255) ccTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGAt < 1:3019966/140‑1 (MQ=255) ccTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGAt < 1:3908653/140‑1 (MQ=255) ccTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGAt < 2:187416/140‑1 (MQ=255) ccTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGAt < 2:2357763/140‑1 (MQ=255) tGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCAtttt < 1:2354023/140‑1 (MQ=255) gAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCAttttt > 1:1712941/1‑140 (MQ=255) aaTCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTg < 1:3672624/140‑1 (MQ=255) aTTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCa < 2:2277744/140‑1 (MQ=255) ttAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCCGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCaa < 2:670425/140‑1 (MQ=255) gAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAgcgc < 1:803441/140‑1 (MQ=255) gAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAgcgc < 1:2914982/140‑1 (MQ=255) aaaaGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGcc < 2:4165780/140‑1 (MQ=255) aTGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTg > 2:1455332/1‑140 (MQ=255) tGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGc > 2:3029092/1‑140 (MQ=255) gACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGct > 2:1021940/1‑140 (MQ=255) gACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGct > 2:2153309/1‑140 (MQ=255) aGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCtctc < 1:4081091/140‑1 (MQ=255) aTACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCgt > 1:3711278/1‑140 (MQ=255) aTACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCgt > 1:1088330/1‑140 (MQ=255) aCCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCgtgt > 2:92254/1‑140 (MQ=255) aCCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCgtgt > 2:2459117/1‑140 (MQ=255) gtgtTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGACCAAAGCGCCTGCTCTCGTGTTCtt > 2:4116252/1‑140 (MQ=255) gtgtTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCtt > 1:4351013/1‑140 (MQ=255) ctggtggACCCACTGAGTGGTGAAGATATAATGCTGTTTTGGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 2:4973549/139‑1 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATACTGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 1:1283113/140‑1 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 2:4224954/140‑1 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 2:1361850/140‑1 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 2:4494915/140‑1 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg > 1:2255227/1‑140 (MQ=255) atGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 1:4032042/140‑1 (MQ=255) gtggACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCtt > 1:3201498/1‑140 (MQ=255) gtggACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCtt > 1:4407091/1‑140 (MQ=255) tggACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCACAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCttt < 1:1177679/140‑1 (MQ=255) gACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCa > 2:3786877/1‑140 (MQ=255) gACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCa > 1:1990256/1‑140 (MQ=255) aCCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCCTTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCaa > 2:2630523/1‑140 (MQ=255) cccACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAgcgc > 1:4787923/1‑106 (MQ=255) cccACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAgcgc < 2:4787923/106‑1 (MQ=255) cccACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCaaa > 2:3089667/1‑140 (MQ=255) cACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGa < 1:94853/140‑1 (MQ=255) aCTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGAc > 1:336724/1‑140 (MQ=255) aCTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGAc > 2:1266974/1‑140 (MQ=255) aCTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGAc > 2:1143583/1‑140 (MQ=255) aCTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGAc > 1:1488496/1‑140 (MQ=255) gATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTgg > 2:4851282/1‑140 (MQ=255) gATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTgg > 1:529046/1‑140 (MQ=255) ggTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCa < 2:828186/128‑1 (MQ=255) gTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGAt < 2:1712941/140‑1 (MQ=255) tGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATg < 1:1548520/140‑1 (MQ=255) tGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGagg > 2:3499844/1‑138 (MQ=255) tGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATg < 2:3207356/140‑1 (MQ=255) tGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATg > 2:3691227/1‑140 (MQ=255) gAAGATATAATGCTGTGTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATGTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGt < 1:901644/140‑1 (MQ=255) atatAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCAtt < 1:2478976/140‑1 (MQ=255) aaTGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCgaa < 1:4974724/140‑1 (MQ=255) gCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCgaagaa < 1:3569169/140‑1 (MQ=255) gCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCgaagaa < 2:336724/140‑1 (MQ=255) gTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGACGAAGgc > 1:2193807/1‑140 (MQ=255) gTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGgc > 1:3227291/1‑140 (MQ=255) gTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATGTGTGTCCAAAGCGCCTGCTCGCGGGTTCTTGGCTTTCGGGGTGTCAAAGACTGGCCGATGTCATTCGAAGAAGgc > 2:1204820/1‑140 (MQ=255) tttttGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCtctc > 2:4606739/1‑86 (MQ=255) tttttGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCtctc < 1:3866146/86‑1 (MQ=255) tttttGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGgcg > 1:242610/1‑140 (MQ=255) tttttGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGgcg > 2:88646/1‑140 (MQ=255) tGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGtttttt > 1:1396550/1‑140 (MQ=255) tGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGtttttt > 2:4815160/1‑140 (MQ=255) tGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGtttttt > 2:4698935/1‑140 (MQ=255) gTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTg > 2:2422510/1‑140 (MQ=255) gTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTg > 2:4523159/1‑140 (MQ=255) tAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGa > 2:1517473/1‑140 (MQ=255) agagCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCt > 2:1475799/1‑70 (MQ=255) agagCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACa > 1:1033369/1‑140 (MQ=255) agagCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACa > 2:277531/1‑140 (MQ=255) agagCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACa > 1:639989/1‑140 (MQ=255) gagCCTGCCTTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACAt > 1:2792426/1‑140 (MQ=255) gcctgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATaa > 1:263880/1‑140 (MQ=255) cctgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAg > 1:1627978/1‑140 (MQ=255) cctgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAg > 1:1756893/1‑140 (MQ=255) cctgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAg > 1:606028/1‑140 (MQ=255) ctgcctTCGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGt > 2:4040767/1‑140 (MQ=255) tgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTc > 1:3074195/1‑140 (MQ=255) tgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTc > 1:4100211/1‑140 (MQ=255) tgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTc > 2:1289564/1‑140 (MQ=255) tgcctTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTc > 1:1912213/1‑140 (MQ=255) ttCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGaa < 1:4834128/140‑1 (MQ=255) cGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAg > 2:1791096/1‑140 (MQ=255) cGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAg > 2:2318712/1‑140 (MQ=255) cGTACTGCTGCCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAg > 1:4626505/1‑140 (MQ=255) gctgcCCGAGTGCGTTGATGATTTTTGTCCAAAGCGACTGCTCTGGTGTTCTTTGCTTTCGGGCTTTCAAATACTGGCCGATGTCATTCGAAGAAAGCGATTGTTCAGAACGTTTTTTGACATAAGTCAGAAAGGAAAAt > 2:524522/1‑140 (MQ=255) gctgcCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGa < 2:586204/73‑1 (MQ=255) gctgcCAGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAGGAAAAt > 1:1259119/1‑140 (MQ=255) ctgcCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAGGAAAAtt > 2:1013158/1‑140 (MQ=255) ctgcCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGGGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACAAAAGTCAGACAGGAAAAtt > 2:2927801/1‑140 (MQ=255) gcCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCggg < 1:268858/60‑1 (MQ=255) cccGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAGGAAAATTGcc < 2:1943538/140‑1 (MQ=255) cGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGc < 2:3257943/72‑1 (MQ=255) cGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGc > 1:3257943/1‑72 (MQ=255) | TCCATTCTTCCCTTCTTGAATCATTAAGGAAATGACAGATACCGGTGTTTTCATATGGTGGACCCACTGATTGGTGAAGATATAATGCTGTTTTTGCTGATTGATATATTGTAAGAGCCTGCCTTCGTACTGCTGCCCGAGTGCGTTGATCATTTTTGTCCAAAGCGCCTGCTCTCGTGTTCTTGGCTTTCGGGCTTTCAAAGACTGGCCGATGTCATTCGAAGAAGGCGCTTGTTCCGCAAGTTTTTTGACATAAGTCAGAAAGGAAAATTGCC > NZ_CP034943/3369441‑3369715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |