| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP034943 | 1,176,173 | G→T | G135V (GGT→GTT) | med → | transcriptional regulator Med |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,176,173 | 0 | G | T | 98.6% | 795.3 / ‑0.9 | 215 | G135V (GGT→GTT) | med | transcriptional regulator Med |
| Reads supporting (aligned to +/- strand): ref base G (3/0); new base T (129/83); total (132/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.49e-01 | |||||||||||
Only 100 of 218 total aligned reads displayed.
CTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAC > NZ_CP034943/1176036‑1176309 | ccAGGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTg > 1:1813545/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGACGCAATGGTTTTTTTTggag > 2:3242700/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTggag > 1:2283636/1‑140 (MQ=255) tGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTggag > 2:602084/1‑140 (MQ=255) ggAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTggagga > 1:158556/1‑140 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGa > 2:1048870/1‑140 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGa > 2:194006/1‑140 (MQ=255) tGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGa > 1:1685789/1‑140 (MQ=255) gAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGAc < 1:1866284/140‑1 (MQ=255) atGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAAGGGTTTTTTTTGGAGGAATGACAGCt > 1:107222/1‑140 (MQ=255) tGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTg < 1:2953639/140‑1 (MQ=255) gCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGc > 2:1407831/1‑140 (MQ=255) gagGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGACCa > 2:1171213/1‑140 (MQ=255) agGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCAt > 1:1381376/1‑140 (MQ=255) ggTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCACTGGTTTTTTTTGGAGGAATGACAGCTGCCCATc > 1:2473951/1‑140 (MQ=255) ggTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATc > 2:2426571/1‑140 (MQ=255) tttAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTc > 1:1498080/1‑140 (MQ=255) tttAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTc > 1:9139/1‑140 (MQ=255) tttAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTc > 1:2826905/1‑140 (MQ=255) tttAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTc > 1:2199431/1‑140 (MQ=255) tttAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTc > 1:656338/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAActa > 1:561437/1‑138 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 2:743939/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 1:3042174/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 1:236650/1‑140 (MQ=255) ggTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGa > 2:733374/1‑140 (MQ=255) tCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAAt > 2:70085/1‑140 (MQ=255) gCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAg < 1:1920148/140‑1 (MQ=255) cGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAgg > 1:232480/1‑140 (MQ=255) cGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAgg > 2:2164899/1‑140 (MQ=255) gAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGACGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 1:3242700/140‑1 (MQ=255) gAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 2:1268000/140‑1 (MQ=255) caaGATTATCGAGATATGGAATTCGTCAATTCTAATGCTAAAGCAAAAGCTGATACTGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGCAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGt < 1:3396373/139‑1 (MQ=255) aTCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTg < 2:2700062/140‑1 (MQ=255) ccAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGAt > 2:2156136/1‑140 (MQ=255) aGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 1:1322888/140‑1 (MQ=255) aGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTg < 2:343031/140‑1 (MQ=255) gATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 1:2916313/140‑1 (MQ=255) gATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 2:2806540/140‑1 (MQ=255) atatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCt > 1:2800541/1‑140 (MQ=255) atatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCt > 1:1467883/1‑140 (MQ=255) tatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCtt > 2:1702030/1‑140 (MQ=255) tatGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCtt > 2:1455075/1‑140 (MQ=255) atGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc < 1:1255410/137‑1 (MQ=255) atGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGc > 2:1255410/1‑137 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGt > 2:1622391/1‑140 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGt > 1:2724283/1‑140 (MQ=255) cGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGt > 2:3052046/1‑140 (MQ=255) gTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTg < 2:158556/140‑1 (MQ=255) tCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTgg < 1:67389/140‑1 (MQ=255) ttCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGc < 2:2333660/140‑1 (MQ=255) ttCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGc < 1:1037134/140‑1 (MQ=255) ttCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGc < 1:1972893/140‑1 (MQ=255) aTGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAg > 1:851828/1‑140 (MQ=255) aTGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAg > 1:639786/1‑140 (MQ=255) aaaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa > 1:2886794/1‑140 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTggagg > 2:1195783/1‑64 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTggagg < 1:1195783/64‑1 (MQ=255) aaGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGAc > 2:2862695/1‑140 (MQ=255) aGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACg > 2:2993996/1‑140 (MQ=255) cAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCACTGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTGTACGTGGCAGCCGGAGGTAGACGGt < 1:16059/140‑1 (MQ=255) cAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGt < 2:2628639/140‑1 (MQ=255) cAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGt < 1:2049634/140‑1 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAg > 2:528338/1‑132 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGa < 2:3107843/133‑1 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGtttt > 1:993990/1‑140 (MQ=255) aaGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAAT‑GGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATGGCTTCCTTTACGTGGCAGCCGGAGGTCGACGGTTTTa > 2:2723039/1‑140 (MQ=255) aGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTAGGTGGCAGCCGGAGGTAGACGGTTTTa > 1:2753975/1‑140 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGcc > 1:3029988/1‑59 (MQ=255) tgACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGcc < 2:1498080/140‑1 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTATACGGTTTTATCAAAGGGGCCa > 1:261790/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 2:2076341/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 2:3076659/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 1:657958/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 1:327983/1‑140 (MQ=255) gACGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCa > 1:3159332/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGCAGCAATGGTTTTTTTTGGAGGAAGGACAGCTGCCCCTCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGTCGGTTTTATCAAAGGGGGCaa > 2:3027766/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCac > 2:855769/1‑139 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa > 1:2145336/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa > 1:382500/1‑140 (MQ=255) aCGAGTGTCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCaa < 1:2519374/140‑1 (MQ=255) tgtCCATTTCAGCGGCGAAGCAAT‑GGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGa > 2:2234976/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATg > 2:1362100/1‑138 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:2879504/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 1:3372624/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaa > 2:2191086/1‑140 (MQ=255) tCCATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCCAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTGTTATCACAGGGGCCAAATATGaa > 1:2999870/1‑140 (MQ=255) ccATTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCATGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGaaa < 1:891249/140‑1 (MQ=255) aTTTCAGCGGCGAAGCAATTGTTTTTTTTGGAGGATTGACAGCTGCCCATCTGTCGAAAACGAATAAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGTTAGACGGTTTTATCAAAGGGGCCAAATATGTAAAt < 2:2027014/140‑1 (MQ=255) aTTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt < 2:293984/140‑1 (MQ=255) aTTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt < 2:1613752/140‑1 (MQ=255) aTTTCAGCGGCGAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAAt < 2:1381376/140‑1 (MQ=255) cggcgAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGata > 1:705320/1‑140 (MQ=255) cggcgAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTGTACGTGGCAGCGGGAGGTAGACGGGTTTATCACAGGGGCCCAATATGAAAATCCGGata > 2:2557902/1‑140 (MQ=255) cgAAGCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAg > 2:332405/1‑140 (MQ=255) gCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGt < 1:3076659/140‑1 (MQ=255) gCAATGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGt < 1:1622391/140‑1 (MQ=255) tGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 1:1779539/140‑1 (MQ=255) tGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 2:639786/140‑1 (MQ=255) tGGTTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAac < 2:851828/140‑1 (MQ=255) | CTATGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCAGCGAAGATTATCCAGATATGGAATTCGTCATTTCTAATGCTAAAGCAAAAGCTGATAATGTGACGAGTGTCCATTTCAGCGGCGAAGCAATGGGTTTTTTTGGAGGAATGACAGCTGCCCATCTGTCGAAAACGAATCAGGTCGGCGTGATTGCTTCCTTTACGTGGCAGCCGGAGGTAGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGGATATAGAAGTCAAC > NZ_CP034943/1176036‑1176309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |