Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349431,730,0930GC27.9% 174.4 / 20.2 106E172Q (GAA→CAA) rodZcell shape determination protein RodZ
Reads supporting (aligned to +/- strand):  ref base G (38/37);  new base C (0/29);  total (38/68)
Fisher's exact test for biased strand distribution p-value = 1.27e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

GCATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTC  >  NZ_CP034943/1729955‑1730211
                                                                                                                                           |                                                                                                                      
 cATCTGAAAAATCAATTACGCAAAGTGAAATCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAaagaa                                                                                                                      >  1:924550/1‑140 (MQ=255)
 cATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAaggac                                                                                                                      >  1:2457763/1‑139 (MQ=255)
 cATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAaagaa                                                                                                                      >  2:2953257/1‑140 (MQ=255)
 cATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAaagaa                                                                                                                      >  2:2230241/1‑140 (MQ=255)
 cATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAaagaa                                                                                                                      >  1:8174/1‑140 (MQ=255)
 aatatGAAAAATCAATTACTCAAAGTGAAAGCAATTACTAAATCCAAAAAGTTTCAACGATAAAAGTGAATAAAAGCAACA‑GCTCTGAAAAAGAGGAAGAAACTAAAAAAGAATCGAAATAAAAACAATATAAAAatgaa                                                                                                                      <  2:697348/136‑1 (MQ=255)
   tCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCATACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAagaaga                                                                                                                    >  2:1481162/1‑140 (MQ=255)
    cTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAgaagaa                                                                                                                   >  1:1567272/1‑140 (MQ=255)
    cTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAgaagaa                                                                                                                   >  1:613991/1‑140 (MQ=255)
      gAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAACGAAGAAAg                                                                                                                 >  2:2983010/1‑140 (MQ=255)
                      aaatttaaaGAAATTACCAAATCCAAAAACATTAAACGAAAAAAGACAATAAACCAAACA‑GCACTCAAAAAGAGCCACAAACTAAAAAAAAAACCAAAAAAAAAAAACATAAAAAACAACACAGCGACAGTGATAAACTg                                                                                                 <  1:1180979/134‑1 (MQ=255)
                      aaaGTCAAAGAAATTACTAAATCCAAAAATATTCAACGCTAAAAGATAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACAATAAAAAAGAAACGAAATAAAAAGAAGCTAAAAAAGACGAAAGCGACAGTGATAAACTg                                                                                                 <  2:208503/140‑1 (MQ=255)
                        aGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGga                                                                                               >  1:2329263/1‑140 (MQ=255)
                        aGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAACAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGga                                                                                               >  1:102359/1‑140 (MQ=255)
                            aaaGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCCGACACTAAAAAAGAAACGAAAGAACAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGAtt                                                                                           >  1:2277218/1‑140 (MQ=255)
                               tcAACTACAAAATCACAAAATATACAAGTCTAAATCATAATAAAAGAAACA‑GTTCTTAAAAAGAGCAACACACTAAAAATCAACCGAAAGAAAAACAAGAAAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTaaa                                                                                        <  1:2416339/139‑1 (MQ=255)
                                  aGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACCCGATACAAGAAACGAAAGAAAAAGAATGTAAAAAAGAAGAAAGCGACAGTGATCAACTGGAGATTAAATCa                                                                                     >  1:723649/1‑140 (MQ=255)
                                  aGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCa                                                                                     >  1:975753/1‑140 (MQ=255)
                                  aGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCa                                                                                     >  1:2207434/1‑140 (MQ=255)
                                  aGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCa                                                                                     >  1:2028373/1‑140 (MQ=255)
                                   gTACGAAATACAAAAAGATTCAACGATAAAAGATAATCAAAGCAACA‑GCTCTGAAAAACAGGCACACACTAAAAAAGAAACCAAAGAAAAACAACAAAAAAAACACCAAAGCGACAGTGATAAACTGGAGATTAAAGCaa                                                                                    <  2:321534/140‑1 (MQ=255)
                                    tACTAAATCCAAAAATATTCAACTCTAACAGAGAATCAAAGCAACA‑CATGTGAAAACGAGCCAGACACTAAAAAACAAACCAAACAAAAACAAGATAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  2:2679367/140‑1 (MQ=255)
                                    tACTAAATCCAAAAACATTCAACGATAAAAGAGAATAAAAGAAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAACAAACCAAAGAAAAAGAACATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  2:1627379/140‑1 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   >  1:2544162/1‑140 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   >  1:2914946/1‑140 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   >  1:1627379/1‑140 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  2:1405157/140‑1 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   >  2:1968369/1‑140 (MQ=255)
                                    tACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  2:2937267/140‑1 (MQ=255)
                                    aaccaaaTCCCAAAAGATACAACCATAAAACACAAAAAAACCACCA‑CATCTAAAAAACAGCAACAAAAAAAAAAAAAAACCAAACAAAAACAACAAAAAAACCAACAACGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  1:1988736/136‑1 (MQ=255)
                                    aaccaaaCCCCAAAAGATACAACCCAAAATGACAATCAAACCACCA‑TCAATTAAAAAGAGCCCGACAATAAAAAACAACCGAAACAAAAAGACCCAAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAAc                                                                                   <  1:2636665/136‑1 (MQ=255)
                                      ctaaaTCCCAAACCTTTAAACTCTAAAACACAATCAAACAAACT‑GATTTCAAAAAGTGGAACACAATAAAAAACAAACCAAACAAAAATACCAAAAAAAACAACACAGCGACAGTGATAAACTGGAGATTAAAGCAACTg                                                                                 <  1:1334874/138‑1 (MQ=255)
                                       aaaaaCCCAAAATATTCACCGCTAAAACAGAATAAAAGCAAAA‑CATTTTAAAAACAGCCAGACACTAAAAAAGAAACCAAACAAAAAGAAGATAAAAAATCCCAACGCGACAGTGATCAACTGGAGATTAAAGCAACTgg                                                                                <  1:1200900/139‑1 (MQ=255)
                                       aaaaTCCAAAAATATTCACCGATAAAAGATAA‑AAAAACAACACGCTCTCAAAATGAGCCACACACTAAAAAATAAACCAAAGAAAAAGAACATAAAAAAGAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTgg                                                                                <  1:2160336/139‑1 (MQ=255)
                                          aTCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCAc                                                                             >  1:67371/1‑140 (MQ=255)
                                           tCCCACAAGATTCAACGCTAAAAGAGAATCAAATCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAACCGAAAGAAAAATAACATAAAAATGAAGAAATATAAAGTGATAAACAGGAGATTAAAGCAACTCGCACt                                                                            >  1:356528/1‑140 (MQ=255)
                                           tCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATACAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACt                                                                            >  1:3044873/1‑140 (MQ=255)
                                           tCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACt                                                                            >  1:1962013/1‑140 (MQ=255)
                                              cAAACGTTTCAACGCTAAAAGAGAATCAAAGCAAAC‑GCTCTGAAAAATAGGCAGACAATAAAAAAAAAACGAAAGAAAAAGACCATAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGaa                                                                         <  2:393842/140‑1 (MQ=255)
                                              cAAAAGATTCAACTCTAAAAGAGAATAAAAGCAACA‑GCTCTTAAAAAGAGGCAGACACTAAAAAATAAACGAAACAAAAAGAAGATAAAAACGACGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGaa                                                                         <  2:42514/140‑1 (MQ=255)
                                              cAAAAGATTCAACGCTAAACGAGAATCAAAGCAACA‑GCTGTGAAAACGTGGCAGACACTAAAAAATAAACCAATGAAACAGAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGaa                                                                         <  2:402978/140‑1 (MQ=255)
                                                aaaGATTCAACGATAAAATACAATAAAAGAAACA‑GCTCTTAAAAAGAGGCAGACACTAAAAAAGAAACTAAACAAAAAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAgg                                                                       <  2:3001693/140‑1 (MQ=255)
                                                 aataTTCAACGATAAAACACAATCAAACAAACA‑GCTCTGAAAATGAGGCAGATACTAAAAAATAAACGAAACAAAAAGAAGATAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                      <  2:2406141/137‑1 (MQ=255)
                                                 aacaTTCAACGCAAAAACATAATCAAACAAACA‑GCTCTCAAAAATAGGCACACAAAAAAAAAGAAACCAAACAAAAAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                      <  2:2706134/137‑1 (MQ=255)
                                                 aaGATTCAACGATAAAAGAGAATCAAACCACCA‑GATCTTAAAAAGAGGCAGACACTAAAAAAGAAACCAAATAAAAACAACATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAggg                                                                      <  2:566311/140‑1 (MQ=255)
                                                      tCAACTCAAAAATAGAAAAAAAGCAACA‑GCTCTTAAAAAGAGGAAGACAATAAAAAAGAAACCAAACAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCAtt                                                                 <  2:2862019/140‑1 (MQ=255)
                                                         ccccTAAAACACAATCAACCCAACC‑GCTCTCAAAAACAGCCAGACAAAAAAAAACAAACCAAACAAAAACACTAAAAAAAAGAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACGGGCACTGAAGGGTCATTAAc                                                              <  1:933823/137‑1 (MQ=255)
                                                         actatAAAACACAATCAAACAAACA‑CAACTTAAAAACAGCAAAAAAATAAAAAACAACCCAAAAAAAAACAACATAAAAAACAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  1:2744791/136‑1 (MQ=255)
                                                         actaaaaaaCACAATAAAAGAACCA‑GCTATTAAAAATAGCCACAAACAAAAAAACAAACAAAATAAAAAGAAGATAAACACCAACAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  1:1866012/135‑1 (MQ=255)
                                                         acccTAAAAGATAAACAAACAACCA‑GCTCTCAAAAACAGCAACAAAAAAAAAAACAAACCAAACAAAAAGAACAAAAAAAACACCAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  1:718803/137‑1 (MQ=255)
                                                         aCGCTAAACGACAAACAAAGCAACC‑CCTCTCAAAAAGAGGAACACACAAAAAAAGAAACCAAACAAAAACAACATAAAAAACAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  1:2230241/140‑1 (MQ=255)
                                                         aCGCTAAAAGAGAATCAAAGCAACA‑GCTATTAAAAAGAGGCATACACTAAAAAACAAACGAAAGAAAAACAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  2:2914946/140‑1 (MQ=255)
                                                         aCGATAAAAGACAATAAAAGCAACA‑GCTCTGAAAAAGAGGAAGACACTAAAAAAGAAACGAAACAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAAc                                                              <  2:2527555/140‑1 (MQ=255)
                                                             tAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGAAACTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGTTCATTAAAGACt                                                          >  2:1927549/1‑140 (MQ=255)
                                                                   ataaTCAAACAAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAATAAAAAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  2:924550/138‑1 (MQ=255)
                                                                   agcaacAAAGCACCA‑GCTCAGAAAAAGAGCCAGACACTAAAAAAGAAACGAAACAACAAGAAGAGAACAAAGACGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  2:2457763/135‑1 (MQ=255)
                                                                   agaATAAAAGCAACC‑GCTATGAAAAAGCGGCAGACACTAAAAAACAAACGAAACAAAAAGAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  2:8174/140‑1 (MQ=255)
                                                                   agaATAAAAGCAACA‑GCTCTTAAAAAGAGGCAGACACTAAAAAATAAACGAAACAAAAAGAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  2:1020307/140‑1 (MQ=255)
                                                                   acaaTAAAAGCAACA‑GATCTCAAAAAGAGGAAGACACTAAAAAACAAACCAAAGAAAAAGAAGATAAAAAAGAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  2:256444/138‑1 (MQ=255)
                                                                   aaaacaaaaCCAACC‑GCTCTCAAAAACAGCCACACACTAAAAAACAACCCAACCAAAAACAACAAAAAAAACACCACCGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGaa                                                    <  1:2444069/134‑1 (MQ=255)
                                                                     aaTCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgt                                                  >  1:453086/1‑140 (MQ=255)
                                                                     aaTCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAgt                                                  >  1:2487874/1‑140 (MQ=255)
                                                                        aaaaGCAACA‑GCTCTGAACAAGAGGCAGACACTAAAAAAGAAACGAAACAAAAAGAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTc                                               <  2:1744366/139‑1 (MQ=255)
                                                                                cA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGgcgcct                                       >  1:1020307/1‑138 (MQ=255)
                                                                                cA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTg                                       >  2:3067023/1‑140 (MQ=255)
                                                                                cA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTg                                       >  2:2948995/1‑140 (MQ=255)
                                                                                cA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTg                                       >  2:1050865/1‑140 (MQ=255)
                                                                                      ctGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGaaa                                  >  2:1222632/1‑140 (MQ=255)
                                                                                         aaaaaGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTc                               >  2:3468/1‑140 (MQ=255)
                                                                                         aaaaaGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTc                               >  1:146056/1‑140 (MQ=255)
                                                                                             agagGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGc                           >  1:1527766/1‑140 (MQ=255)
                                                                                             agagGCACACACTAAAAAATAAACGAAAGAAAAAGAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGc                           <  2:2487874/140‑1 (MQ=255)
                                                                                              gagGCAGACACTAAAAAAGAAACGACAGAAAAAGACGTTAAAAAAGAAGAAAGCGACAGTGATAAACGGGAGATTAAAGCAACTGGCACTGTAGGGTCAGTAACGACTTATGAAGTGTCCGGCGCTGAGACATTCGAGCt                          >  1:2259877/1‑140 (MQ=255)
                                                                                              gagGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAACTTCGAGCt                          >  1:2268023/1‑140 (MQ=255)
                                                                                              gagGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCt                          >  1:2120089/1‑140 (MQ=255)
                                                                                              gagGAAGACACTAAAAAATAAACCAAACAAAAACAACATAAAAAACAAGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCt                          <  1:2897926/140‑1 (MQ=255)
                                                                                                   aGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAAc                     >  2:214824/1‑140 (MQ=255)
                                                                                                      cacTCAAAAAGAAACCAAAGAAAAATAAGATCAAAACGCAGAAACCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGCACGGa                  <  2:580089/140‑1 (MQ=255)
                                                                                                      cacTAAAAAATAAACTAAAGAAAAAGAATATAAAAAAGACGACAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  2:117355/140‑1 (MQ=255)
                                                                                                      cacTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  2:1567272/140‑1 (MQ=255)
                                                                                                      cacTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  2:613991/140‑1 (MQ=255)
                                                                                                      cacTAAAAAACAAACGAAACAAACAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:1642750/140‑1 (MQ=255)
                                                                                                      caatAAAAAAGAAACGAAACAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:1428946/137‑1 (MQ=255)
                                                                                                      caatAAAAAACAAACGAAACAAAATCAATATAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:1134188/137‑1 (MQ=255)
                                                                                                      caaaaaaaaaTAAACTAAATAAAAAAAATAAAAAAAAAACCAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:1180096/136‑1 (MQ=255)
                                                                                                      aacTAAAAAAGAAACGAAAGAAAACCAAGATAAAAAACACGAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  2:117156/139‑1 (MQ=255)
                                                                                                      aacTAAAAAACAAACTAAACAAAAACAAGATAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:581887/139‑1 (MQ=255)
                                                                                                      aaatAAAAAATAAACCAAACAAAAAGAAGATAAAAACCAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGa                  <  1:285597/137‑1 (MQ=255)
                                                                                                            aaaaTAAACGAACTAAAAACAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCAt            <  2:1001942/140‑1 (MQ=255)
                                                                                                                taaaCGAAATAAAAAAAATAAAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  2:2207434/139‑1 (MQ=255)
                                                                                                                taaaCGAAACAAAAAGAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  1:617660/139‑1 (MQ=255)
                                                                                                                gAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  2:2028373/140‑1 (MQ=255)
                                                                                                                gAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  2:67371/140‑1 (MQ=255)
                                                                                                                gAAACCAAAGAAAAACAAGATAAAAAAGACGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  2:723649/140‑1 (MQ=255)
                                                                                                                caaaCGAACGAAAAATAAGATAAAAAACAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGa        <  2:55162/139‑1 (MQ=255)
                                                                                                                 aaaCGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGAc       >  1:238557/1‑140 (MQ=255)
                                                                                                                 aaaCGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGAc       >  2:954870/1‑140 (MQ=255)
                                                                                                                  aaCCAAACAAAAACAACAAAAAAAACAACAACGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACa      <  1:255043/140‑1 (MQ=255)
                                                                                                                   aCGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAg     >  2:1811136/1‑140 (MQ=255)
                                                                                                                      aaaaaaaacaaaCATAAAAAAGAACCAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTc  <  1:270782/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                      
GCATCTGAAAAATCAATTACGCAAAGTGAAAGCAAGTACGAAATCCCAAAAGATTCAACGCTAAAAGAGAATCAAAGCAACA‑GCTCTGAAAAAGAGGCAGACACTAAAAAAGAAACGAAAGAAAAAGAAGATAAAAAAGAAGAAAGCGACAGTGATAAACTGGAGATTAAAGCAACTGGCACTGAAGGGTCATTAACGACTTATGAAGTGTCCGGCGCTGAGAAATTCGAGCTCGAACTGAAGGCATCAGACAGTTC  >  NZ_CP034943/1729955‑1730211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑