Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349432,991,2450GT27.6% 170.2 / 17.6 116intergenic (+46/‑161)gbsR/bslAtranscriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand):  ref base G (28/56);  new base T (30/2);  total (58/58)
Fisher's exact test for biased strand distribution p-value = 2.55e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 116 total aligned reads displayed.

CTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATA  >  NZ_CP034943/2991109‑2991383
                                                                                                                                          |                                                                                                                                               
ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTTTTT‑aa                                                                                                                                             >  1:2157755/1‑140 (MQ=255)
ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTGTTTTTTTT‑aa                                                                                                                                             >  1:2157760/1‑140 (MQ=255)
ctctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑TTTTTTTATGtta                                                                                                                                              >  1:2315292/1‑138 (MQ=255)
 tctAACGCTTACTATGATTGGCTGAAACGGCTTGCTTAATCGGGGCCGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGCAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AAt                                                                                                                                            <  1:1468587/140‑1 (MQ=255)
 tctAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AAt                                                                                                                                            <  2:77714/140‑1 (MQ=255)
 tctAAAGCTTACTAGGCTTGGCTGAAACGGGTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AAt                                                                                                                                            <  2:2315292/140‑1 (MQ=255)
 tctAAAGATTAATATGATGGTCTGAACCGGCTGTCTCAATCGGTGCAGAGCGGTGAAATTTTTAAATTTATACCGATTCAAAAAAATTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AAt                                                                                                                                            <  1:1797988/140‑1 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑GTTTTTTATTT‑AAATAATAC‑aaa                                                                                                                                  >  2:1924537/1‑140 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑ATTTTTTATTT‑AATTAATAa‑aaa                                                                                                                                  >  2:584730/1‑140 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTATGT‑AATTTATAC‑aaa                                                                                                                                  >  2:1905951/1‑140 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTGTTTTGTT‑GTTTTTTTTTt‑tattaaaaaaaa                                                                                                                                   >  1:1767859/1‑133 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTGTTTTTT‑CTTTTTTTTTT‑AATTACaaa‑aaa                                                                                                                                  >  1:1225144/1‑140 (MQ=255)
          tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATAACGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑ATTTTTTTTGT‑AATTAATAC‑aaa                                                                                                                                  >  2:1902349/1‑140 (MQ=255)
           aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑ATTTTTTATTT‑AAATAAAAC‑aaaa                                                                                                                                 >  2:2737643/1‑139 (MQ=255)
           aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑TTTTTTTTTGT‑AATTAAAAC‑AAA‑t                                                                                                                                >  2:385670/1‑140 (MQ=255)
           aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTGTT‑ATTTTTTATTT‑TATTAATAa‑aaaa                                                                                                                                 >  2:2527910/1‑139 (MQ=255)
             tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AAAGCCTGGGAAACCGGGCGTTTTTTTTTT‑GGTTTTTATGT‑AAATACTAA‑AAA‑ttt                                                                                                                              >  2:1436082/1‑140 (MQ=255)
                 aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑ATTTTTTATGT‑AATTACTAA‑AAA‑TTTTaaa                                                                                                                          >  2:1091654/1‑140 (MQ=255)
                 aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑ATTTTTTATTT‑AATTAATAA‑AAA‑TTTTaaa                                                                                                                          >  2:1782778/1‑140 (MQ=255)
                 aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGT‑GTTTTTTTTTT‑AATTAATAC‑AAA‑TTTGaaa                                                                                                                          >  1:2617302/1‑140 (MQ=255)
                  ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑GTTTTTTTTTT‑AATTTCTAA‑AAA‑ATTTaaaa                                                                                                                         >  1:1775109/1‑140 (MQ=255)
                  ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATTT‑AATTAATAA‑AAA‑tttttaaa                                                                                                                         >  2:1017293/1‑135 (MQ=255)
                  ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑GTTTTTTATTT‑AATTAATAA‑AAA‑TTTTaaaa                                                                                                                         >  1:3037669/1‑140 (MQ=255)
                  ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑TTTTTTTTTTT‑TAGTAAAAC‑AAA‑ATTTaaaa                                                                                                                         >  1:1008440/1‑140 (MQ=255)
                  ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGGTTTGTTGTTTTTTTTTGT‑AA‑TGCTAC‑AAA‑ATTGtaaa                                                                                                                         >  1:1925375/1‑140 (MQ=255)
                       tcaaaCGGCTTGCTGACTCGGTGCCGAGGGGGGAAATTTTTAAATTTATACCGATTTAAACAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACg                                                                                                                    <  1:2542844/138‑1 (MQ=255)
                            cGGCTTGCTGATTCGGTGAAGAGCGGGTAAATTTTTAAATTTTTACCTATTGAAACAATGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑aaa                                                                                                              <  1:2520892/140‑1 (MQ=255)
                            cGGCTTGCTGAATGGGTGCAGAGGGGTTAAATTTTTAAATTTATACCTATTTAAACAAATTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑aaa                                                                                                              <  1:385670/140‑1 (MQ=255)
                               tttgtttaaTGGGTGCAGAGCGGTTAAATTTTTAAATTTATACCTATTGAAACAATTAAAAAAAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAc                                                                                                           <  1:1207431/133‑1 (MQ=255)
                               cTTGCTGAATCGGTGCAGAGCGGTTAAATTTTTAATTTTATACCGATTCAAACAAAGAAAAAAAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAc                                                                                                           <  1:1231997/140‑1 (MQ=255)
                               cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTGTT‑TGTTTTTATGT‑TATTAAAACAAAA‑TTTAAAAAAAAGGGG‑aaaaa                                                                                                            >  1:967528/1‑140 (MQ=255)
                                  gCTTAATGGTTGCTGAGCGGTTTATTTTTTAAATTTTTACGGATTTAAACATATTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTCCTAG‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATc                                                                                                       <  1:584730/140‑1 (MQ=255)
                                        tCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGGTTTTTTGTT‑GTTTTTTATGT‑TATTACTAC‑AAA‑TTTTAAAAATACGGG‑GAAAAA‑ATCCCAatt                                                                                                 >  2:613084/1‑140 (MQ=255)
                                           gTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTGTTATGT‑AATTAATAA‑AAA‑ATTTAAAAATAAGGG‑AAAAAC‑AAACCATTTACt                                                                                              >  2:2516010/1‑140 (MQ=255)
                                                gcgCGGGGAAATTTTTAAATTTATACCGATTGAAAAAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCaa                                                                                         <  1:2527910/138‑1 (MQ=255)
                                                   cGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑TTTTTTTATGT‑AAATAATAC‑CAA‑TTTGTCAAAAAGGGG‑AAAAAA‑ATGCCATTTTGTTACAAAat                                                                                      >  2:1649765/1‑140 (MQ=255)
                                                     gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑GATTTTTTTGT‑AATTTCGAC‑AAA‑TTTTAAAAATAAGGG‑AAAAAC‑ATGCCCTTTTCTTGCACAatat                                                                                    >  2:2369865/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTTTT‑GTTTTTTATTT‑TATTACTAA‑AAA‑TTTGTAAAATAAGGG‑AAAAAA‑ATACCATTTAATTGCAAAAAAtt                                                                                   >  2:1370404/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑GTTTTTTATGT‑AATTAATAC‑AAA‑TTTGAAAAATACGGG‑AAAAAA‑AAAACATTTAATTACAAAATAtt                                                                                   >  2:2560471/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATTT‑AATTACTAA‑AAA‑TTTTAAAAATACGGG‑GAAAAA‑GTGCCATTTAGTTCCAAAAtttt                                                                                   >  2:3048997/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑CTTTTTTATTT‑AATTAATAC‑AAA‑TATTAAAAATACGGG‑AAAAAC‑ATCCCAATTAATTCAAAAATAtt                                                                                   >  2:2569753/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTGT‑GTTTTTTGTGT‑AATTTCTAC‑AAA‑GTTGGAAAAAACGGG‑AACAAA‑ATCCCAATTACTTCCAAAAtttt                                                                                   >  2:923355/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑GTTTTTTTTTT‑AATTTCAAA‑AAA‑AATTAAAAAAAAAGG‑TAAAAC‑AAAACAATTAATTGCAAAAAAtt                                                                                   >  2:2341309/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑CTTTTTTTTGT‑AATTAATAC‑AAA‑ATTTAAAAATACGGG‑AAAAAC‑ATACCAATTAATTGAAAAataat                                                                                   >  2:338643/1‑138 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑CTTTTTTATTT‑AATTAATAA‑AAA‑TTTTAAAAATAAGGG‑AAAAAC‑ATCCAATTTAATTAAAAAATAtt                                                                                   >  2:1824815/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑ATTTTTTATTT‑AATTAATAC‑AAA‑ATTTAAAAATAAGGG‑AAAAAA‑ATCCCATTTTATTAAAAAATAtt                                                                                   >  2:1143129/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGGT‑GTTTTTTATGT‑TATTACTAC‑AAA‑TTTTTAAAATAAGGG‑AAAAACAAACCCATTAATTGCCaaaaatt                                                                                    >  2:1094487/1‑137 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTGTTGTT‑GTTTTTTATGT‑AATTAATAC‑AAA‑ATTGAAAAATAACGC‑AAAAAC‑ATACCAATTAATTACAAAataat                                                                                   >  2:1045809/1‑138 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTTTT‑CTTTTTTATGT‑AATTACTAA‑AAA‑TTTGGAAAATACGGGCAAAAAA‑AACCCA‑TTAATTCCAAAAAAtt                                                                                   >  2:77422/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGGTTTTGTT‑GTTTTTTTTTT‑TATTTATACAAAA‑TTTTAAAAATAGGGG‑AAAAAA‑ACCCCA‑TTAGTTTCAAAAAAtt                                                                                   >  1:1506098/1‑140 (MQ=255)
                                                      ggAAATTTTTAAATTTATACAGATTGAAACAAAGTAAAACAAA‑AACCACTGGGAAAACTGGCGTTTTTTTTTA‑GTCTTTTATTT‑AAATAATAA‑AAA‑TAAGTAAAAAACCGT‑CAAAAC‑CACCCATATAATTACAAAataaa                                                                                   >  2:1191774/1‑138 (MQ=255)
                                                            ttttAAATTTATACCTTTTGAAACAAAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATgg                                                                             <  1:1559438/140‑1 (MQ=255)
                                                                           gATGGAAACAAAGCAAACCAAA‑CACGCCTGCGAAACCGGGCGTATTTTTGTT‑CTTTTTTATGT‑AAGTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTCCTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                              <  1:2331723/140‑1 (MQ=255)
                                                                           catacaaaCACAGTAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                              <  1:2052165/135‑1 (MQ=255)
                                                                            aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑TGTTTTTTTGT‑ATATAGTAC‑AAAGTTTGAAAAAAACGGA‑CAAACA‑AGCCCATTT‑CGTAAAAAAAATTTTTTGGTAATTTTTTTTTGGTa                                                             >  1:2179107/1‑140 (MQ=255)
                                                                            aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑GTTGTTTATTT‑AATTAAAAC‑AAA‑AATGTAAAATAAGGG‑AAAAAC‑ATAACATTTAGTTACCAAAAATTTTATGGGAATGTTATGTAGGTa                                                             >  2:862871/1‑140 (MQ=255)
                                                                            aTTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑CTTTTTTATGT‑AATTAATAC‑CAA‑TTTTAAAAATACGGG‑AAAAAC‑ATACCAATTAATTCCAAAATATTTGATGGTAATTTTATGTAGGTa                                                             >  2:2895685/1‑140 (MQ=255)
                                                                              tGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTGTT‑ATTTTTTATTT‑AAATAATAC‑AAA‑ATTGAAAAATAAGGG‑AAAAAC‑ATACCAATTAAATACAAAAAAATTTATTGTAATTTTATTTATGTaaa                                                           >  2:1166562/1‑140 (MQ=255)
                                                                              tGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGGTGTTTTTTT‑GTTTTTTATTT‑AATAAAAAA‑AAA‑TATTAAAAATAACGG‑AAAAAA‑AAAACAATTACATAAAAAATATATTATTGTAATTTTtagtagcttaa                                                           >  2:1841580/1‑135 (MQ=255)
                                                                                aaaaaaAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                         <  2:2100927/140‑1 (MQ=255)
                                                                                aaaCAAAGTAAAACAAA‑AACGCCTGGGACACCGGGCGTTTTTTTGTT‑TTTTTTTATGTAAATTACAAA‑AAA‑TTT‑AAAAAAACCGG‑AAAAAC‑ATACCCTTTTATTCCAGTAAAATTTTTGGTAATTTTTtgtatgtagatt                                                         >  2:2628833/1‑136 (MQ=255)
                                                                                aaaCAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                         <  2:1506098/140‑1 (MQ=255)
                                                                                aaaCAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                         <  2:1952345/140‑1 (MQ=255)
                                                                                     aactAAAACAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTa                                                    <  1:445251/137‑1 (MQ=255)
                                                                                     aaGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTGTTTTTTTT‑GTTTTTTTTTT‑TATTTATAC‑AAA‑ATTTTAAAATAAAGG‑AAAAAA‑AAACCAATTAAATACAAAAAAATTTTTTGTAATTTTATTTTGTTTAAAtttttt                                                    >  1:1558298/1‑137 (MQ=255)
                                                                                          aaccAAA‑CACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTCC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:2224377/137‑1 (MQ=255)
                                                                                          aaacaaa‑cACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:3037669/140‑1 (MQ=255)
                                                                                          aaaCAAA‑ACCGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAACAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:2575025/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGTGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:1653208/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:1956887/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:883360/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  1:2903458/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:2338632/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  1:1245469/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:498750/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:2873081/140‑1 (MQ=255)
                                                                                          aaaCAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  2:518024/140‑1 (MQ=255)
                                                                                           aacaaacaACCCCTGGGAAACCGGGCGTTTTTTTGTT‑CATTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                               <  1:868365/140‑1 (MQ=255)
                                                                                               aa‑aaCGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAA‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTATTTTTATTTATGTAAAATTTGTAttttggagtt                                          <  2:907168/140‑8 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:2156822/140‑1 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:1905951/140‑1 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:2444360/140‑1 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:2737643/140‑1 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  2:1578359/140‑1 (MQ=255)
                                                                                                     gCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:2858223/140‑1 (MQ=255)
                                                                                                     cccTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATTT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                     <  1:2797778/139‑1 (MQ=255)
                                                                                                               ccGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAACAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                           <  1:2076040/140‑1 (MQ=255)
                                                                                                               ccGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                           <  1:2860744/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATTT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  1:1561727/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  1:1017293/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  2:1512767/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  1:1370404/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  2:48814/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑CTTTTTTATGT‑AATCACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  1:147348/140‑1 (MQ=255)
                                                                                                                    cGTTTTTTTGTT‑ATTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                      <  1:2706884/140‑1 (MQ=255)
                                                                                                                      tttttttGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCa                    <  1:1782778/140‑1 (MQ=255)
                                                                                                                       ttttttGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAg                   <  2:889658/140‑1 (MQ=255)
                                                                                                                                 cTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTCAata          >  1:1846263/1‑140 (MQ=255)
                                                                                                                                    ttttATGT‑AATTACTAC‑AAT‑TGTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACATCCGAAATATTTGATGTGAATTTTATGTAGGTGAAATTTGTAGTTGGCCGTTCAGAGGAGGTGGAAAGCGGGCAGGCCTGaagagtt       >  1:3069402/1‑135 (MQ=255)
                                                                                                                                        aTGT‑CATTACTAC‑AAA‑TTTGAACAAGACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTtat   <  2:1671075/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                               
CTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAA‑AACGCCTGGGAAACCGGGCGTTTTTTTGTT‑CTTTTTTATGT‑AATTACTAC‑AAA‑TTTGAAAAATACGGG‑AAAAAC‑ATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATA  >  NZ_CP034943/2991109‑2991383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑