BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	3,394,378	0	C	G	25.0%	330.5 / 19.0	166	G174G (GGG→GGC)	ppaX	pyrophosphatase PpaX
Reads supporting (aligned to +/- strand): ref base C (23/85); new base G (36/0); total (81/85)
Fisher's exact test for biased strand distribution p-value = 1.28e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 176 total aligned reads displayed.

TTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTAACGA  >  NZ_CP034943/3394239‑3394508

ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                                     <  2:1197772/140‑1 (MQ=255)

ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                                     <  1:2233691/140‑1 (MQ=255)

ttCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTc                                                                                                                                     <  2:2066774/140‑1 (MQ=255)

             ctgcACTCCAACGAGTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACAt                                                                                                                       <  1:2567658/137‑1 (MQ=255)

             cTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACAt                                                                                                                       <  2:1694321/140‑1 (MQ=255)

             cTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACAt                                                                                                                       <  1:641530/140‑1 (MQ=255)

             cTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACAt                                                                                                                       <  2:2388512/140‑1 (MQ=255)

                 aCTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTACCGCGTTTTTACCTTCCAG‑CACATCGtt                                                                                                                   >  1:2992203/1‑139 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTACCTGGCAG‑CACATggtggt                                                                                                                 >  2:2616049/1‑140 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTGTTTGCCTGCCCG‑CCCAACGTGGt                                                                                                                 >  2:2347550/1‑140 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGt                                                                                                                 >  2:2280453/1‑140 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCATGCACG‑CACATCGTGGt                                                                                                                 >  2:726367/1‑140 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGGTTGTTCCGGCGTTTTTGCCTGCCAG‑CCCATCGTGGt                                                                                                                 >  1:753666/1‑140 (MQ=255)

                   tCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCACGCTCATGCTTTGCCAGTGTTTCCGGCCATATAATCGTCCATGCGACTCCCGCCGTGTTTGTTCCGGCGTTTTTACAGGACAG‑CACATCGTTGt                                                                                                                 >  2:1248559/1‑140 (MQ=255)

                     cAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTGTAATCCTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTaa                                                                                                               <  1:303610/140‑1 (MQ=255)

                       aCGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTaaat                                                                                                             >  1:2545465/1‑138 (MQ=255)

                       aCGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTACGGCGTTTTTACCGTCCAC‑CACAACGGTGTAAtt                                                                                                             >  1:210735/1‑140 (MQ=255)

                        cGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCACTGCCAG‑CACATAGTGGTAATTa                                                                                                            >  2:401653/1‑140 (MQ=255)

                           tttGTAATAGATCACTCATTTTCTCAAGCATATACTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTAtct                                                                                                         <  2:1272982/140‑1 (MQ=255)

                             tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTcc                                                                                                       <  1:1564969/140‑1 (MQ=255)

                             tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTcc                                                                                                       <  1:2208821/140‑1 (MQ=255)

                             tGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTcc                                                                                                       <  2:1881811/140‑1 (MQ=255)

                             ggTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTcc                                                                                                       <  1:1799820/139‑1 (MQ=255)

                               tAATAGATCACTCATTTTCTCAAGCATATACTCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGa                                                                                                     <  2:2931902/140‑1 (MQ=255)

                                aaTAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGAc                                                                                                    <  1:2347550/140‑1 (MQ=255)

                                    gATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTACCGCGTTTTTTCCATCCCG‑CACAACGTGGTAAATATATACGACCATa                                                                                                >  1:436160/1‑140 (MQ=255)

                                     aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTTCGGGGGTTTTACCTGGCCG‑CACAACCGGGTCAATATCTCACACCAGaa                                                                                               >  1:2323615/1‑140 (MQ=255)

                                     aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTACCTGCCAG‑CACATCGTGGTAATTATATGCGACCATaa                                                                                               >  2:2440949/1‑140 (MQ=255)

                                     aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTGTGCGGCGGTTTTGCCTGCCCG‑CACATCGGGGTAATTATATCCGACCATaa                                                                                               >  1:618608/1‑140 (MQ=255)

                                     aTCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTCCGGGGGTTTTGCCGGCCAG‑GCCAACCTGGTAAGTATATACGAcccgaa                                                                                               >  1:75893/1‑136 (MQ=255)

                                       cACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTACGGCGTTTTTGCCTGCCAG‑CCCATAGTGGTAAATATCTCCGACCATAAtt                                                                                             >  2:362372/1‑139 (MQ=255)

                                         cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTCCCTGCCAG‑CACATCGGGGTAATTATCTACGACCAAAATGGc                                                                                           >  2:1799820/1‑140 (MQ=255)

                                         cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGGGGTTTTACCTGGCAG‑CACATCCTGGTGATTATCTCCGACCATAATGGc                                                                                           >  1:788884/1‑140 (MQ=255)

                                         cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTGCGGCGTTTTTGCCTGCCAG‑CCCCAAGTGGTAATTATATACGACCATAAAGGc                                                                                           >  2:248938/1‑140 (MQ=255)

                                         cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTTCGGCGTTTTTGACTGCCAG‑CCCCACGGGGTAATTATCTCCCACCAAAATGGc                                                                                           >  1:989272/1‑140 (MQ=255)

                                         cTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGGGGTTTTGCCGGCCAG‑GCCCTCGGGGTAATTATGTCCCACCCAAATggg                                                                                           >  1:1028752/1‑139 (MQ=255)

                                          tCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCTGCCAG‑CACATAGTGGTGATTATATCCCACCATAATTGCt                                                                                          >  2:1226229/1‑140 (MQ=255)

                                          tCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATAGTGGTAATTATCTCCGACCATAATGGCt                                                                                          >  2:2892947/1‑140 (MQ=255)

                                               ttCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTccgc                                                                                     <  2:680337/140‑1 (MQ=255)

                                                 ctcAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTCCGGCGTTTTTGCCTGCCAG‑CACATCGTGGTGAGTATATCCGCCCATAAAGGGTTccgccg                                                                                   >  1:3033892/1‑140 (MQ=255)

                                                    aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTACTCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCACTGCCAG‑CACATCGTGGTAATTATCTCCGTCCATAATGGCTTCCGCCGGCt                                                                                <  1:76307/140‑1 (MQ=255)

                                                    aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCCTGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATGATCTCCGACCATAATGGCTTCCGCCGGCt                                                                                <  1:141474/140‑1 (MQ=255)

                                                    aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCCCGCGTTTTTAGCTCCCCGACACACCG‑GGGACTTATATACCACCATAATGGCTTTCGCCGGca                                                                                >  1:100724/1‑139 (MQ=255)

                                                    aaGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGCGTTTTTGCCTGCCAG‑CCCCTCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCt                                                                                >  2:1052546/1‑140 (MQ=255)

                                                      gCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCg                                                                              <  1:1467426/140‑1 (MQ=255)

                                                                 ggCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGTTTTTGCCTGCCCG‑CACAGCGTGGTAATTATCTCCGACCATAATGGCTTACCCCCGCTCGCGTCCTAGCTg                                                                   >  1:2886849/1‑140 (MQ=255)

                                                                  gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTCGGGCGGGTTTGCCGGCCCG‑CCCCGGGTGGTAATTTTGTCCGCCCAAGATGGGGTCAGCCGGCGCGCTTCCAAGCTGt                                                                  >  1:243930/1‑140 (MQ=255)

                                                                  gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGGGTTTTTGGCTGCCCG‑CACATCGGGGTAATTATATACGACCAGAATGGCTTCCGCCGGCGCGCGTCCGAGCGGt                                                                  >  1:250313/1‑140 (MQ=255)

                                                                  gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGGGGTTTTGCCCGCCCC‑GCCAGCGGGGGAATTATCTCCCCCCATAATGGCTTCCGCCCGCGCGCGTCCTAGcggg                                                                  >  1:2440732/1‑137 (MQ=255)

                                                                  gCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTACGGCGTTTTTCCCATCCAC‑CAAAAACTGGTTATTATCTCCCACCCAAAATGCTTACGCCGGCGAGCATCCTAGcgtt                                                                  >  2:1628933/1‑137 (MQ=255)

                                                                      aTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  2:843299/140‑1 (MQ=255)

                                                                      aTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  1:595534/140‑1 (MQ=255)

                                                                      aTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  2:769798/140‑1 (MQ=255)

                                                                      aTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  2:1505508/140‑1 (MQ=255)

                                                                      aTGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  2:1418308/140‑1 (MQ=255)

                                                                      aTGCTTGGCCAGTGTGTCCGGCCCTTTAATCGTCCAGGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCa                                                              <  2:1790621/140‑1 (MQ=255)

                                                                       tGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTCCCTGCCAG‑CACAACGTGGTAATTATCACCGCCCATAATGGCTTCCGCCGGCGCGCTTCCTAGCGGTTTCAg                                                             >  2:783230/1‑140 (MQ=255)

                                                                       tGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTGTTGCGGCGTTTTTCCCTGCCAG‑CACATGGTGGTAATTATCTGCGACCATAATGGCTTGCGCCGGCTAGCTTCCTAGCTGTTTAAg                                                             >  2:1620648/1‑140 (MQ=255)

                                                                            tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCCGGGGTTTTACCGGCCCG‑CACATCCTGGTAATTATATACGACCATAATGGGATCCGCCGGCTCGCGTCCGAGCTGTTTCAGCGCTa                                                        >  1:2954624/1‑140 (MQ=255)

                                                                            tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTa                                                        >  2:2898587/1‑140 (MQ=255)

                                                                            tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTACCTGCCCG‑CACATCGTGGTAAATATATCCGACCATAATGGCTTCCGCCGGCTCGCTTACAAGATGTTTAAGCGCTa                                                        >  2:1801070/1‑140 (MQ=255)

                                                                            tGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTGTTTTTTGCGGCGTTTTTGCCTGCCAC‑CCCCACGGGGTAATTATCTCCGACCAAAATTGCTTACGCCGGCTCGCGTCCTATCGGTTTAAGCGCTa                                                        >  1:2920048/1‑140 (MQ=255)

                                                                             gCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTaa                                                       <  1:1226229/140‑1 (MQ=255)

                                                                                  tgtgTCCGGCCCGTTAATCGTCCATGCGACTCCGGCCGATTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAAGGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                                  <  1:1615874/140‑1 (MQ=255)

                                                                                  tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGCGGTTTTGCCAGCCCC‑CACAAACTGGTAATTATAACCCACCAAAAATGCTTACGCCCGCGCGCGGGCTAGCGGGTTGAGCGCTAAAAAca                                                  >  1:698001/1‑140 (MQ=255)

                                                                                  tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                                  <  2:1461752/140‑1 (MQ=255)

                                                                                  tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                                  <  1:850896/140‑1 (MQ=255)

                                                                                  tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGca                                                  <  2:1818054/140‑1 (MQ=255)

                                                                                  tgtTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTGTTTCCCCTCCAG‑CACATCGGGGTAAGTATCTCCGACCCTAAAGGCTTCCGCCGGCTCCCGTCCTAACGGTTTACGCGCTACAAGcc                                                  >  2:3063368/1‑139 (MQ=255)

                                                                                     ttCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTTTTGCGGGGTTTTTGCCTGCCAC‑CACCACCTGGTAATTATATCCGACCATAAAGGCGTGCCCCCGCTCCCGTCCTAGCTGTTTAAGCGCGaaaaaaacaa                                               >  1:1696134/1‑134 (MQ=255)

                                                                                        cGGCCCTTTACTCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                            <  1:1354489/140‑1 (MQ=255)

                                                                                        cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                            <  2:2145276/140‑1 (MQ=255)

                                                                                        cGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                            <  2:2702315/140‑1 (MQ=255)

                                                                                              tttAATCGTGCATGCTACTCCGGCCGTTTTTGTTCCCGCGTTTTTCCCTGCCAG‑CACATCGTGGTATTTATCTCCGACCATTATGGGTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAATCACAGGATCGGGAt                                      <  2:596159/140‑1 (MQ=255)

                                                                                              tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                      <  1:2803099/140‑1 (MQ=255)

                                                                                              tttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGAt                                      <  2:1443464/140‑1 (MQ=255)

                                                                                               ttAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATc                                     <  1:963130/140‑1 (MQ=255)

                                                                                                tAATCGTCCATGCGACTCCGGCCGTTTTTTTTACGGCGTTTTTCCCTGCCAG‑CACATCGGGGTAATTATCTCCCACCATAATGGCTTACGCCGGGTCGCGTCCGAGCTGTGTCAGCGCTAACAGCACAGGCTCGGGCTCa                                    >  2:2374443/1‑140 (MQ=255)

                                                                                                    cGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCt                                <  1:1878022/140‑1 (MQ=255)

                                                                                                      tCCATGCGACTCCGGCCGTTTTTGTTGCGGCGGTTTTACCGGCCCG‑CACAGCGGGGTACATATATCCCACCAAAATGGCTTCCGCCGGCTCGCGTCCTAGCGGTTTCACCGCGAAAATCACAGGCACGGGATCAGGCtgt                              >  2:576680/1‑138 (MQ=255)

                                                                                                         aTGCGACTCCGGCCGTTTTTGTTCCCGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGcc                           <  1:2616179/140‑1 (MQ=255)

                                                                                                          tGCGACTCCGGCCGTTTTTGTTCCGGGGTTTTTCCCTGCCAG‑CACATCGGGGGAATTATCTCCGACCATAATGGCTTGCCCCGGCTCGCTTCCTAGCTGTTTCCCCGCTAAAAGCACAGGCTCGGGCTCCGGCTTTGccc                          >  2:2013809/1‑139 (MQ=255)

                                                                                                              aCTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGt                      <  1:186670/140‑1 (MQ=255)

                                                                                                                tCCGGCCGTTTTTTTTCCGGCGTTTTTGCCTGCCAG‑CACAGCGTGGTAATTATCTCCGACCATAATGGGTTGCGCCGGGTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGGTCACGGGTTGCCATCGTca                    >  2:2768768/1‑140 (MQ=255)

                                                                                                                tCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTca                    <  1:2466796/140‑1 (MQ=255)

                                                                                                                 ccGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcac                   <  2:348592/140‑1 (MQ=255)

                                                                                                                  cGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcaca                  <  1:1628933/140‑1 (MQ=255)

                                                                                                                  cGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTcaca                  <  2:2959481/140‑1 (MQ=255)

                                                                                                                  cGGCCGTTTTTGTTACGGCGTTTTTACCTGCCCG‑CACATCGGGGTAATTATCTCCGACCAAAATGGCTTCCGCCGGCTCGCTTCCAAGCAGTTTCAGCGCGAAAAACACAGGCGCGGGATCAGGCTTTGCCATCGTcaca                  >  2:1531163/1‑140 (MQ=255)

                                                                                                                    gCCGTGTTTGTTGCGGCGTTTTTGCCTGCCCG‑CCCAGCGTGGTAATTATATCCGACCAGAAATGCTTGCGCCCGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACACGCTCGGGATCAGGCGTTGCCAAAGTcacaaa                >  2:186670/1‑138 (MQ=255)

                                                                                                                        tttttGTTGCCGCGTTTTTGCCTGCCAG‑CACATCGTGGTAATTATATCCGACCATAAAGGCTTCCGCCCGCTCGCTTCCTAGCGGTTTAAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCAcagcagaa            >  2:2472337/1‑137 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  1:1993731/140‑1 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  1:362372/140‑1 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  2:210735/140‑1 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  2:2920048/140‑1 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  2:2545465/140‑1 (MQ=255)

                                                                                                                        tttttGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAAGGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACAtcatca            <  1:2442153/140‑1 (MQ=255)

                                                                                                                                  ggCGTTTTTCCCTGCCAG‑CACATCGTGTTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTCGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTAACGa  <  2:1992335/140‑1 (MQ=255)

                                                                                                                                  ggCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTAACGa  <  2:629807/140‑1 (MQ=255)

                                                                                                                                   gCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCt                                            >  1:1198803/1‑97 (MQ=255)

TTCTCACAGATTACTTCACTCCAACGATTTGTAATAGATCACTCATTTTCTCAAGCATATAATCAGGCTCATGCTTTGCCAGTGTTTCCGGCCCTTTAATCGTCCATGCGACTCCGGCCGTTTTTGTTCCGGCGTTTTTCCCTGCCAG‑CACATCGTGGTAATTATCTCCGACCATAATGGCTTCCGCCGGCTCGCTTCCTAGCTGTTTCAGCGCTAAAAGCACAGGCTCGGGATCAGGCTTTGCCATCGTCACATCATCAAGGGTAACGA  >  NZ_CP034943/3394239‑3394508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`