| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | 2411159 = | 194 (1.040) | 5 (0.030) | 5/250 | 8.5 | 2.7% | coding (635/924 nt) | spoIIIAA | stage III sporulation protein AA |
| ? | NZ_CP034943 | = 2411155 | 182 (1.060) | coding (639/924 nt) | spoIIIAA | stage III sporulation protein AA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/2411307‑2411159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgatgatTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATGAAG < NZ_CP034943/2411155‑2411017 GGCAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAAGTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCT < 1:2734979/140‑1 GCAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTG > 1:1512465/1‑140 GCAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTG > 2:546935/1‑140 CAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGGATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTATACGCCTGTCCAAAGGCTGAGGGGCTGA < 2:132034/140‑1 CAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGA < 2:710087/140‑1 AAAAACCACATATTGCCCTTTAAGACAGGAATCGTCGACGATCGGTCAGAAATTGCCGGATGCATGCTCGGCATTCCTCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCATAGGCTGAGGGGCTGAT < 1:818930/140‑1 AAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGAT < 1:1137479/140‑1 AAAAACCACATATTGCCCGGAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGAT < 2:392722/140‑1 ACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATG < 1:2518185/140‑1 CCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGA < 2:655157/140‑1 CCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGA < 2:1527670/140‑1 CCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGATTCGATCCAT < 1:2147495/140‑1 CCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTG > 1:9930/1‑140 TGTCCAAAGGCTGAGGGGCTGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCA < 2:9930/140‑1 GAGGGGCTGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCG > 1:903360/1‑58 GAGGGGCTGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCG < 2:903360/58‑1 TGATGATGATTCTATCCATGAGCCCTGAGGTGATCATTGTCGATTCAATCGGTCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCTGGTGTTTAAGTTATCGTCTCCGCGCATGGCTGGAGCATATCCGAC < 2:2662128/140‑1 TGATGATGATTCGCTCCATGCGCCCTGAGGTGATCCTGGTCGATGAAATGGGGCGTGTGGAAGAGACAGCTCAACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGAC < 2:1121565/140‑1 TGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGAC < 1:1336104/140‑1 TGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGAC < 1:2221053/140‑1 TGATGATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGAC < 1:1876737/140‑1 GATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGA > 2:43584/1‑140 ATGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGGGTGTGGAAGATACAGATGCACTTCTTGTGGCGGTGCATGCAGGTGTTTGAGTTATCGTCTCGGCGCATGGCTGGCGGATATCCGACCTGAT > 1:1340234/1‑140 TGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATG < 2:1784295/140‑1 TGATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTAAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATG > 2:1313287/1‑140 GATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGC > 2:494790/1‑118 GATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGC < 1:494790/118‑1 ATTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATGAA < 1:877065/140‑1 TTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATGAAG > 2:1585634/1‑140 TTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATGAAG < 2:1535388/140‑1 GGCAAAAACCACATATTGCCCGTAAAGACAGGAATCGTCGACGAACGGTCAGAAATTGCCGGATGCCTGCGCGGCATTCCGCAGCATCAATTTGGACAGAGGATTGACGTATTAGACGCCTGTCCAAAGGCTGAGGGGCTGATGATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP034943/2411307‑2411159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgatgatTCGATCCATGAGCCCTGAGGTGATCATTGTCGATGAAATCGGGCGTGTGGAAGATACAGATGCACTTCTTGAGGCGCTGCATGCAGGTGTTTCAGTTATCGTCTCGGCGCATGGCTGGAGCATATCCGACCTGATGAAG < NZ_CP034943/2411155‑2411017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |