BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,252	0	C	A	24.5%	188.8 / 14.5	110	intergenic (+53/‑154)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base C (26/54); new base A (25/1); total (55/55)
Fisher's exact test for biased strand distribution p-value = 4.39e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 110 total aligned reads displayed.

TACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTT  >  NZ_CP034943/2991119‑2991388

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTTTAATTAATAaaaa                                                                                                                                     >  2:1850530/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTAATTACTACaaa                                                                                                                                     >  2:1170309/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTAATTAATAaaaa                                                                                                                                     >  2:1832056/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTATTTTTTATGTAATTAATACaaa                                                                                                                                     >  2:1850234/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTTATTAATAaaaa                                                                                                                                     >  1:2090291/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTTTTTTTTTTGTTAATAATAaaaa                                                                                                                                     >  1:14805/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTAATAAATAaaaa                                                                                                                                     >  1:19144/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAAATACTACaaa                                                                                                                                     >  2:2369181/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAATTAATACaaa                                                                                                                                     >  1:1205990/1‑140 (MQ=255)

tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAAACGGGCGT‑TTTTTTGTTGTTTTTTATTTAAATAATAaaaa                                                                                                                                     >  2:357947/1‑140 (MQ=255)

 aCTCTGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTGTTTTTTTTTTTTTTTTTTATTAATAaaaaa                                                                                                                                    >  1:783800/1‑139 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTACAAAt                                                                                                                                    >  2:2105659/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATTTAAATAATAaaaaa                                                                                                                                    >  1:681692/1‑139 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTTTTTTTTTTTTATTACTACAAAt                                                                                                                                    >  1:1531768/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTCTGTAATTACTACAAAt                                                                                                                                    >  2:2108361/1‑140 (MQ=255)

 aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATACaaaa                                                                                                                                    >  2:2035698/1‑139 (MQ=255)

   tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTCTTTTTTATTTAATTACTAAAAAttt                                                                                                                                  >  2:1065755/1‑140 (MQ=255)

   tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTATTTTTTATTTAATTAAAAAAAAttt                                                                                                                                  >  2:828133/1‑140 (MQ=255)

   tATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAGTACAAAatt                                                                                                                                  >  1:142476/1‑140 (MQ=255)

      gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑aa                                                                                                                              <  2:915300/140‑1 (MQ=255)

      gATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑aa                                                                                                                              <  2:915166/140‑1 (MQ=255)

       aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTATTTAATTACTACAAAATTT‑aaa                                                                                                                             >  1:2281400/1‑140 (MQ=255)

        ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTACTAAAAATTTT‑aaaa                                                                                                                            >  1:128495/1‑140 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTTTTTTTTATGTAATTAATACAAATTTT‑AAAAATa                                                                                                                         >  2:503598/1‑140 (MQ=255)

           gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTAATTAATACAAATTTT‑AAAAATa                                                                                                                         >  2:327750/1‑140 (MQ=255)

             tGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATGTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTGTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATaag                                                                                                                       >  2:1378282/1‑138 (MQ=255)

               aaaCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTATGTAATTACTAAAAATTTG‑TAAAATACggg                                                                                                                     >  2:2093592/1‑140 (MQ=255)

                   ggCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCTATTGAACCAAAGTAAAACAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAAGTACTACAAATTTG‑AAAAATACGGGaaaa                                                                                                                 <  2:720525/140‑1 (MQ=255)

                   ggCTTGCTGAATCGGTGCAGAGCCGGGAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGA‑TTTTTTGTTCTTTTTTATGTAAGTACTACAAATTTG‑AAAAATACGGGaaaa                                                                                                                 <  2:721003/140‑1 (MQ=255)

                     cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAAc                                                                                                               <  1:605243/140‑1 (MQ=255)

                     cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTACTACAAAATTT‑TAAAATAACGGACAAAc                                                                                                               >  1:2022610/1‑140 (MQ=255)

                     cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGGTGTTTTTTTTGTAAATAGAAAAAATTTGTAAAAAAACGGCaaaaa                                                                                                                >  1:445843/1‑140 (MQ=255)

                      ttGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTTTGTAATTAAAACAAAATTG‑AAAAAAAAGGGgaaaaaa                                                                                                              >  1:2793072/1‑138 (MQ=255)

                       tGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGGTGATTTTTTTGTAAATAATAAAAATTTG‑AAAAAAAACGGaaaaaaaa                                                                                                             >  2:1425971/1‑137 (MQ=255)

                         cTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTTTTATTAATAAAAAAAAT‑AAAAATACTGGaaaaaaaaca                                                                                                           >  1:1691981/1‑135 (MQ=255)

                                  tGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTGTTTTTTTTGTAATTAATAAAAATTTT‑AAAAATACTGGAAAAAAATCACAGTTACtt                                                                                                  >  2:1126555/1‑140 (MQ=255)

                                     cgcggggggAAATTTTTAAATTTATACCGATTGAAACAACGTAAACAAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAACCATCCCATTTACTTCCa                                                                                               <  1:344770/135‑1 (MQ=255)

                                     agcgCGGGCAAATTTCAAAATTTAAACCGATTCAAACAAACTAACACAAAA‑ACGCCGGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                                               <  1:2438416/137‑1 (MQ=255)

                                     agagCGGGGAAATTTTTAAATTTATACCGATTGAAAAAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCa                                                                                               <  1:2035698/140‑1 (MQ=255)

                                            gtaaaTTTTTAAATTTATACCGATTGAAAAAAAGTAAAAAAAAA‑ACGCCTGGGAAACCGGGCGT‑CTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATAtt                                                                                        <  1:1034386/138‑1 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGGTTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTCTTTTTTATTTTATTACTACCAATTTT‑AAAAATTCGGGAAAAAAATCCCAGTTACTTGCAAAATGtt                                                                                        >  2:2818005/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTTTTGTTTTTTTTGTAAATACTACAAATTTT‑TAAAATAAGGGGAAAAAATCCCATTTACTTGCAAAATAtt                                                                                        >  2:384362/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTTTTTAATTACTACCAATTTG‑TAAAATAAGGGAAAAACATCCCATTTAATTCCAAAATAtt                                                                                        >  2:2797176/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTGTTTTTTGTAAATACTACAAATTTT‑AAAAATAAGGGAAAAAAAAGACAATTAATTACAAAATAtt                                                                                        >  2:1524849/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTTTTCTTTTTTATGTAATTACTAAAAATTTG‑TAAAATACGGGAAAAACATCCCATTTAGTTCCAAAAtttt                                                                                        >  2:2026476/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATGTAATTAATACAAAATTG‑AAAAAAACGGGAAAAACATCCCATTTAATTCAAAAAAAtt                                                                                        >  2:1687221/1‑140 (MQ=255)

                                            ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTAGTTCTTTTTTATGTGATTACTACAAATTTG‑AAAAATAAGTGACAAACATACCAATTCAGTACAAAatata                                                                                        >  2:2639383/1‑139 (MQ=255)

                                               aaTTTTTAAATTTATCACGATTGAAACAAAGTAAAACAAAA‑AAGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGa                                                                                     <  2:779717/140‑1 (MQ=255)

                                                 tttttAAATTTATACCTATTTAAAAAACTTAAAACAAAA‑ACGCCTGGGAAACCGGGATT‑TTTTTTGTTCTTTTTTATGTAATTACTACATATTTG‑AAAAATTGGGGATTAAGATCACATTTAATTCCTAAATAttgtatg                                                                                   <  2:1363073/140‑6 (MQ=255)

                                                  ttttAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                  <  1:1811155/140‑1 (MQ=255)

                                                  ttttAAATTAATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                  <  1:266976/140‑1 (MQ=255)

                                                  ttatAAATTTATACCGATTCAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATgg                                                                                  <  1:2134997/137‑1 (MQ=255)

                                                            ataCCGATTTAAACAACGAAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTCCAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                        <  2:486253/140‑1 (MQ=255)

                                                            ataCCGATTGAAAAAAAGAAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                                        <  2:1918191/140‑1 (MQ=255)

                                                                 gATTCAAACAAAGTAAACCAAAC‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt                                                                   <  1:2369181/140‑1 (MQ=255)

                                                                   ttGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTGTTCTGTTTTTTGTAATTACTACAAAATTG‑AAAAATACGGGGAAAAAATGCCAGTTTCTTCCCAAAGATTTGATTGTAATTTTTTGTAGGtga                                                                 >  2:885271/1‑138 (MQ=255)

                                                                      aaacaaacAACAACACAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATACCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                              <  1:1832056/140‑1 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTTTTTTTTTTTTTTTTATTTATAAAAAATTTA‑AAAAAAAAGGGAAAAAAAACCAGTTTA‑TTACAAAAAATTTTTTTGTAATTTTTTTTTGGTGAAAttttttt                                                        >  1:652160/1‑136 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATTTAATTACTAAAAAATTT‑AAAAATAAGGGTAAAAAAAACCATTTAGTTACAAAATATTTGTTGGTAATTTTATGTTTGTAAAATTTTTAt                                                        >  2:1410815/1‑140 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTGTTTTTTATGTAATTACTACAAATTTT‑AAAAATAAGGGAAAAACATCCCATTTACTTGCAAAATATTTTATGGTAATTTTATGTAGGTAAAATTTGTAt                                                        >  2:1983105/1‑140 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTGTTTTATTTTTTATGTAATTATGAAAAAATTT‑AAAAATAAGGGAAAAACATACCCTTTACTTCCAAAATATTTTATGTTAATTTTATTTAGTTAAAAttttttt                                                        >  2:2464142/1‑136 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TGTTTTTTTGTTTTTTATGTAATTACTAAAAATTTG‑TAAAATAAGGGAAAAACATCCCCTTTTATTCCCAAATATTTGTTTGTAATTTTATGTATGTGAAAttgtgtg                                                        >  2:1579105/1‑135 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTTGTTTTTTTGTTATTACTAAAAAATTT‑AAAAATAAGGGAAAAACATAACAGTTAATTGAAAAAAATTTTTTTTTTATTTTATTTAGTTTATAtttttgt                                                        >  1:1981489/1‑136 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAATTAATACAAAATTT‑TAAAATAAGGGAAAAAAAACCCAATTTCTTCCAAAATATTTTATGGTAATTTTATTTAGGTAAAATTTGttt                                                        >  2:1455866/1‑138 (MQ=255)

                                                                            aGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑GTTTTTGTTGTTTTTTATTTAAATAATAAAAAATTT‑AAAAATAAGGGAAAAAAATACCATTTAATTACAAAAAATTTTATGGTAATTTTATTTAGGTAAAATTTTTAt                                                        >  2:1481878/1‑140 (MQ=255)

                                                                             caaacaCAAAA‑ACGCATGGGAAACCGGTCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTAtt                                                       <  1:2673038/135‑1 (MQ=255)

                                                                                acacaaca‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATGTACTTCCAAAATATTGGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:7907/138‑1 (MQ=255)

                                                                                aaacaaac‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  1:2797176/140‑1 (MQ=255)

                                                                                aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:14805/140‑1 (MQ=255)

                                                                                aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:1558349/140‑1 (MQ=255)

                                                                                aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:290967/140‑1 (MQ=255)

                                                                                aaaaaaaa‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:1078721/140‑1 (MQ=255)

                                                                                aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  1:1324972/140‑1 (MQ=255)

                                                                                aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  1:1850530/140‑1 (MQ=255)

                                                                                aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:1691981/140‑1 (MQ=255)

                                                                                aaaCAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:158329/140‑1 (MQ=255)

                                                                                aaaCAAAA‑ACCCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  2:127825/140‑1 (MQ=255)

                                                                                 aaCAAAACACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                                    <  1:1850234/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:2114675/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:2093592/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  2:19144/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:1410815/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:1481878/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:384362/140‑1 (MQ=255)

                                                                                           gCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  1:2818005/140‑1 (MQ=255)

                                                                                           cccTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCagag                                          <  2:188532/139‑1 (MQ=255)

                                                                                                tgAAAGCGTGCGT‑TTTTTTTTTCTTTTTTATTTAATTAATACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                                     <  1:1687221/139‑1 (MQ=255)

                                                                                                gcaaaCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACGTCCAAACTATTTGAGGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                                     <  1:2279903/138‑1 (MQ=255)

                                                                                                    aCCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaa                                 <  1:327750/140‑1 (MQ=255)

                                                                                                     ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                                <  1:1065755/140‑1 (MQ=255)

                                                                                                     ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                                <  1:995597/140‑1 (MQ=255)

                                                                                                     ccGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGaaaa                                <  1:1613705/140‑1 (MQ=255)

                                                                                                          cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACATATTTG‑AAAAATACGGGAAACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                           <  2:2753451/140‑1 (MQ=255)

                                                                                                          cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AACAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                           <  1:1496381/140‑1 (MQ=255)

                                                                                                          cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                           <  2:681692/140‑1 (MQ=255)

                                                                                                          cGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg                           <  1:503598/140‑1 (MQ=255)

                                                                                                                             tATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTta         <  1:577956/140‑1 (MQ=255)

                                                                                                                               tGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATAGTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTtata       >  2:2711889/1‑140 (MQ=255)

                                                                                                                                gTAATTACTACAAATTTG‑CAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATaa      <  2:1423259/140‑1 (MQ=255)

                                                                                                                                    ttACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACttt  >  1:2590914/1‑140 (MQ=255)

TACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGT‑TTTTTTGTTCTTTTTTATGTAATTACTACAAATTTG‑AAAAATACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTT  >  NZ_CP034943/2991119‑2991388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`